ttype patient gene classification type chr pos ref_allele newbase context65 cons46 BRCA BR-0001 PRAMEF4 SNP Synonymous 1 12942094 G A 37 48 BRCA BR-0001 IVL SNP Missense 1 152883016 A G 7 52 BRCA BR-0001 ZBTB37 DEL Splice_Site_Del 1 173837392 AGGCA - 11 51 BRCA BR-0001 CHIT1 SNP Missense_Mutation 1 203191404 C T 30 90 BRCA BR-0001 TRIM49 SNP Missense 11 89531510 C T 17 36 BRCA BR-0001 DRD5 SNP Missense 4 9784617 T C 55 88 BRCA BR-0001 GRM4 INS Frame_Shift_Ins 6 34100851 - G 59 37 BRCA BR-0002 TCHH SNP Missense_Mutation 1 152081726 C T 32 50 BRCA BR-0002 IVL SNP Missense 1 152883009 T C 54 44 BRCA BR-0002 SPEN SNP Missense 1 16255140 T G 59 51 BRCA BR-0002 SPEN SNP Missense 1 16255142 G C 41 91 BRCA BR-0002 ILDR2 SNP Silent 1 166927145 G A 45 67 BRCA BR-0002 VAMP4 SNP Nonsense_Mutation 1 171678834 G A 37 72 BRCA BR-0002 TNN SNP Silent 1 175097269 G A 41 63 BRCA BR-0002 HMCN1 SNP Nonsense_Mutation 1 186031088 C A 29 61 BRCA BR-0002 NFASC SNP Silent 1 204924024 C A 30 56 BRCA BR-0002 EIF4G3 SNP Nonsense_Mutation 1 21268004 G C 45 80 BRCA BR-0002 TARBP1 SNP Synonymous 1 234553884 C T 29 64 BRCA BR-0002 TARBP1 SNP Synonymous 1 234553935 G A 45 47 BRCA BR-0002 GTPBP4 SNP Missense 10 1058471 G C 45 97 BRCA BR-0002 ANUBL1 SNP Missense_Mutation 10 46143950 C T 32 94 BRCA BR-0002 VDAC2 SNP Nonsense_Mutation 10 76982036 C G 29 85 BRCA BR-0002 RGR SNP Missense_Mutation 10 86012643 C T 32 62 BRCA BR-0002 QSER1 SNP Missense_Mutation 11 32954075 C T 24 61 BRCA BR-0002 OSBP SNP Nonsense_Mutation 11 59376180 G C 45 86 BRCA BR-0002 SF3B2 SNP Missense 11 65835787 C T 25 98 BRCA BR-0002 PACS1 SNP Missense 11 65977843 G A 33 83 BRCA BR-0002 NOS1 SNP Missense 12 117669913 C T 31 97 BRCA BR-0002 PITPNM2 SNP Nonsense_Mutation 12 123485369 C A 29 69 BRCA BR-0002 FAM186A SNP Synonymous 12 50746166 G C 45 45 BRCA BR-0002 CLLU1OS SNP Missense_Mutation 12 92814847 C T 32 52 BRCA BR-0002 KL SNP Nonsense_Mutation 13 33627952 C T 29 100 BRCA BR-0002 APEX1 SNP Silent 14 20925406 C T 29 54 BRCA BR-0002 SALL2 SNP Missense_Mutation 14 21992809 C G 32 68 BRCA BR-0002 CDKL1 SNP Missense 14 50829725 C G 29 51 BRCA BR-0002 NID2 SNP Missense_Mutation 14 52520852 C T 29 59 BRCA BR-0002 ADAMTS17 SNP Missense_Mutation 15 100537601 C G 29 78 BRCA BR-0002 VPS13C SNP Missense_Mutation 15 62202444 C G 29 82 BRCA BR-0002 ZNF609 SNP Missense_Mutation 15 64967841 G A 45 100 BRCA BR-0002 SRRM2 SNP Missense_Mutation 16 2815863 G C 41 51 BRCA BR-0002 MMP15 SNP Missense_Mutation 16 58073982 C G 18 53 BRCA BR-0002 C17orf39 SNP Silent 17 17957467 C T 31 55 BRCA BR-0002 KIAA0100 SNP Missense_Mutation 17 26955466 C G 29 98 BRCA BR-0002 CPD SNP Missense_Mutation 17 28748817 C T 30 80 BRCA BR-0002 TRIM37 SNP Missense 17 57105827 C T 22 85 BRCA BR-0002 RPS6KB1 SNP Missense 17 58024096 C A 17 96 BRCA BR-0002 TP53 SNP Missense_Mutation 17 7577106 G A 41 95 BRCA BR-0002 NPLOC4 SNP Missense_Mutation 17 79563247 C G 32 100 BRCA BR-0002 KIAA0802 SNP Splice_Site 18 8796229 G C 33 87 BRCA BR-0002 SFRS14 SNP Missense_Mutation 19 19136589 C A 30 57 BRCA BR-0002 ZNF568 SNP Missense_Mutation 19 37441932 G C 33 49 BRCA BR-0002 CIC SNP Nonsense_Mutation 19 42791030 C T 21 90 BRCA BR-0002 IRGQ SNP Silent 19 44099419 G A 37 48 BRCA BR-0002 MUC16 SNP Missense_Mutation 19 9062785 T C 60 48 BRCA BR-0002 TUBA3E SNP Missense_Mutation 2 130953785 C T 29 74 BRCA BR-0002 NR4A2 SNP Missense_Mutation 2 157183425 G A 38 85 BRCA BR-0002 SP100 SNP Missense_Mutation 2 231314378 G A 41 44 BRCA BR-0002 SP100 SNP Missense_Mutation 2 231314967 G C 33 50 BRCA BR-0002 ITSN2 SNP Nonsense_Mutation 2 24526705 G A 45 63 BRCA BR-0002 BIRC6 SNP Missense_Mutation 2 32678880 T G 51 56 BRCA BR-0002 C2orf63 SNP Missense_Mutation 2 55439929 C T 31 57 BRCA BR-0002 EIF2AK3 SNP Splice_site 2 88890569 A G 6 90 BRCA BR-0002 BPI SNP Missense 20 36938973 C T 29 59 BRCA BR-0002 TMPRSS15 SNP Nonsense_Mutation 21 19685299 G A 47 60 BRCA BR-0002 SON SNP Missense_Mutation 21 34922772 C T 23 52 BRCA BR-0002 CARD10 SNP Missense_Mutation 22 37898681 G C 33 75 BRCA BR-0002 MAFF SNP Missense_Mutation 22 38610477 G A 45 63 BRCA BR-0002 STAG2 SNP Splice_Site_SNP 23 123197697 G C 34 97 BRCA BR-0002 MCF2 SNP Missense_Mutation 23 138668603 C T 30 80 BRCA BR-0002 ZFX SNP Silent 23 24197640 C G 32 58 BRCA BR-0002 SMEK3P SNP Missense 23 27479117 C G 32 34 BRCA BR-0002 PPP2R3B SNP Splice_Site 23 308072 C T 32 63 BRCA BR-0002 FAM47C SNP Missense 23 37027730 C T 31 9 BRCA BR-0002 KCND1 SNP Splice_Site 23 48823167 C A 18 96 BRCA BR-0002 MRPS25 SNP Missense_Mutation 3 15094075 C T 31 52 BRCA BR-0002 MUC4 SNP Missense 3 195510706 G A 36 70 BRCA BR-0002 ZNF385D SNP Missense_Mutation 3 21606070 G C 33 100 BRCA BR-0002 SCN10A SNP Missense 3 38812779 A C 4 90 BRCA BR-0002 MED28 SNP Missense_Mutation 4 17616360 C T 31 70 BRCA BR-0002 CHRNA9 SNP Silent 4 40351427 G A 45 59 BRCA BR-0002 YTHDC2 SNP Missense_Mutation 5 112868687 G C 33 98 BRCA BR-0002 SEC24A SNP Missense 5 134010826 G C 33 100 BRCA BR-0002 ODZ2 SNP Missense_Mutation 5 167645662 G A 41 77 BRCA BR-0002 NSD1 SNP Missense_Mutation 5 176721105 C G 29 63 BRCA BR-0002 SDHA SNP Missense_Mutation 5 226026 G C 33 96 BRCA BR-0002 SLC45A2 SNP Missense_Mutation 5 33982496 C T 24 50 BRCA BR-0002 ACTBL2 SNP Missense_Mutation 5 56777819 C T 23 59 BRCA BR-0002 PPIL6 SNP Silent 6 109721258 A G 16 52 BRCA BR-0002 MYB SNP Synonymous 6 135539052 G A 33 57 BRCA BR-0002 RANBP9 SNP Synonymous 6 13625988 G A 45 81 BRCA BR-0002 REPS1 SNP Missense 6 139247600 C T 29 98 BRCA BR-0002 SYNE1 SNP Missense 6 152772267 G C 33 58 BRCA BR-0002 NUP153 SNP Nonsense 6 17629707 G T 45 56 BRCA BR-0002 MDC1 SNP Missense_Mutation 6 30680851 C G 30 50 BRCA BR-0002 COL11A2 SNP Silent 6 33148086 G A 41 51 BRCA BR-0002 KIFC1 SNP Missense_Mutation 6 33371895 G A 33 68 BRCA BR-0002 TBCC SNP Missense_Mutation 6 42713445 C T 26 54 BRCA BR-0002 COL21A1 SNP Silent 6 56044743 G A 37 25 BRCA BR-0002 PIP5K1P1 SNP Synonymous 6 7987072 C T 19 58 BRCA BR-0002 GPR85 SNP Silent 7 112724441 G C 33 51 BRCA BR-0002 VWDE SNP Missense 7 12376890 G A 45 57 BRCA BR-0002 NOS3 SNP Missense_Mutation 7 150690919 G C 41 80 BRCA BR-0002 NFE2L3 SNP Missense_Mutation 7 26224617 C G 29 47 BRCA BR-0002 POLD2 SNP Missense_Mutation 7 44155411 C G 30 68 BRCA BR-0002 PCLO SNP Synonymous 7 82582628 C T 29 54 BRCA BR-0002 TOP1MT SNP Missense_Mutation 8 144403390 C G 32 56 BRCA BR-0002 TOP1MT SNP Missense 8 144403540 C G 30 89 BRCA BR-0002 GSDMD SNP Silent 8 144644187 G A 47 51 BRCA BR-0002 PDE7A SNP Splice_site 8 66692036 C T 32 91 BRCA BR-0002 KCNB2 SNP Silent 8 73848478 G T 45 50 BRCA BR-0002 FKBP15 SNP Missense_Mutation 9 115931682 C T 31 42 BRCA BR-0002 GOLGA1 SNP Synonymous 9 127693608 C T 24 55 BRCA BR-0003 FAM160B1 SNP Missense_Mutation 10 116605972 A T 8 78 BRCA BR-0003 MRGPRX4 SNP Missense_Mutation 11 18194855 C T 19 52 BRCA BR-0003 ATP6V0A2 SNP Synonymous 12 124229239 G A 36 63 BRCA BR-0003 INSM2 SNP Missense 14 36005002 G T 43 56 BRCA BR-0003 ADCY7 SNP Missense 16 50342651 C T 18 56 BRCA BR-0003 HN1 DEL Splice_site 17 73142778 C - 30 77 BRCA BR-0003 SLC26A11 SNP Missense_Mutation 17 78195586 C T 23 96 BRCA BR-0003 CLUL1 SNP Nonsense 18 624924 C A 26 59 BRCA BR-0003 KCNK6 SNP Missense_Mutation 19 38810837 T G 58 10 BRCA BR-0003 NLRP12 SNP Missense_Mutation 19 54313492 A G 12 70 BRCA BR-0003 MXRA5 SNP Silent 23 3228603 C T 31 35 BRCA BR-0003 MME SNP Silent 3 154858036 A T 8 38 BRCA BR-0003 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA BR-0003 MUC4 SNP Missense 3 195513298 A G 3 51 BRCA BR-0003 SCN5A SNP Missense_Mutation 3 38622673 C T 27 62 BRCA BR-0003 GK3P SNP Missense 4 166199361 C G 17 51 BRCA BR-0003 SLC6A19 SNP Silent 5 1221908 T C 55 44 BRCA BR-0003 PDE8B SNP Silent 5 76649228 G A 34 54 BRCA BR-0003 MEF2C SNP Silent 5 88018601 G A 40 74 BRCA BR-0003 OPN5 SNP Missense 6 47749839 C T 27 44 BRCA BR-0003 FUT7 SNP Missense_Mutation 9 139925442 G A 36 65 BRCA BR-0004 PRMT6 SNP Missense 1 107600392 G T 38 50 BRCA BR-0004 NOTCH2 DNP Missense 1 120529684 TC CA 54 79 BRCA BR-0004 RYR2 SNP Splice_site 1 237893655 C A 25 98 BRCA BR-0004 NOC2L SNP Missense 1 889206 G A 42 95 BRCA BR-0004 ZNF644 SNP Missense 1 91404735 C A 28 52 BRCA BR-0004 FAM21A SNP Synonymous 10 51853140 C T 19 43 BRCA BR-0004 ATP5C1 SNP Missense 10 7844304 A T 8 64 BRCA BR-0004 LGI1 SNP Missense 10 95556884 A G 4 91 BRCA BR-0004 LYVE1 SNP Missense 11 10585799 C T 23 59 BRCA BR-0004 EXPH5 SNP Missense 11 108384826 C T 23 64 BRCA BR-0004 POLD3 SNP Missense 11 74329821 C T 19 54 BRCA BR-0004 GABARAPL1 SNP Missense 12 10370732 A T 10 82 BRCA BR-0004 TXNRD1 SNP Synonymous 12 104720193 A C 13 53 BRCA BR-0004 TCTN2 SNP Synonymous 12 124171430 C T 23 42 BRCA BR-0004 ESPL1 SNP Missense 12 53675342 G A 45 75 BRCA BR-0004 CCDC77 SNP Missense 12 551076 G C 33 84 BRCA BR-0004 MAB21L1 SNP Missense 13 36049764 G A 40 100 BRCA BR-0004 CGNL1 SNP Missense 15 57731230 A T 16 77 BRCA BR-0004 WHAMM SNP Missense 15 83495558 A T 9 82 BRCA BR-0004 HYDIN SNP Missense 16 70989430 C G 28 51 BRCA BR-0004 HP SNP Missense 16 72094238 T G 53 63 BRCA BR-0004 GPATCH8 SNP Nonsense 17 42541874 C T 30 100 BRCA BR-0004 MIB1 SNP Missense 18 19437103 T C 55 88 BRCA BR-0004 ZNF808 SNP Missense 19 53056891 A G 4 53 BRCA BR-0004 ZNF121 SNP Nonsense 19 9676731 G T 45 60 BRCA BR-0004 ABCA12 SNP Synonymous 2 215866406 T G 59 40 BRCA BR-0004 XPO1 SNP Missense 2 61725884 G C 48 100 BRCA BR-0004 ZNF638 SNP Missense 2 71633367 A G 8 75 BRCA BR-0004 CPSF3 SNP Missense 2 9572785 G A 38 88 BRCA BR-0004 PATZ1 SNP Missense 22 31741053 C T 22 66 BRCA BR-0004 DMD SNP Missense 23 31947838 G A 38 82 BRCA BR-0004 ZDHHC15 SNP Missense 23 74641773 G T 44 51 BRCA BR-0004 WNT7A SNP Missense 3 13916470 G T 44 99 BRCA BR-0004 CP SNP Missense 3 148930279 G C 44 74 BRCA BR-0004 ACTL6A SNP Missense 3 179298701 A C 2 90 BRCA BR-0004 DGKG SNP Nonsense 3 185906042 C A 30 59 BRCA BR-0004 ITIH1 SNP Missense 3 52816191 T A 56 88 BRCA BR-0004 ANK2 SNP Nonsense 4 114286335 G T 45 96 BRCA BR-0004 PDE5A SNP Missense 4 120463729 C T 31 71 BRCA BR-0004 C4orf35 SNP Missense 4 71201675 G C 34 52 BRCA BR-0004 SLC4A4 SNP Splice_Site_SNP 4 72313452 T A 57 93 BRCA BR-0004 ZNF608 SNP Synonymous 5 123983014 A G 16 51 BRCA BR-0004 BHMT SNP Missense 5 78426896 A T 7 91 BRCA BR-0004 DPYS SNP Missense 8 105440307 G T 48 63 BRCA BR-0004 SPAG11A DEL Frame_Shift_Del 8 7717922 T - 56 53 BRCA BR-0005 LOC100133331 SNP Missense 1 664790 A T 7 38 BRCA BR-0005 ZNF705A SNP Synonymous 12 8327888 A G 3 47 BRCA BR-0005 FBXO33 SNP Synonymous 14 39870474 T C 51 42 BRCA BR-0005 ACAN SNP Missense 15 89399986 C G 17 40 BRCA BR-0005 ABAT SNP Missense 16 8873407 T G 52 47 BRCA BR-0005 LAMA1 SNP Missense 18 6943256 G A 46 52 BRCA BR-0005 LIMS1 SNP Splice_Site_SNP 2 109276221 G T 44 83 BRCA BR-0005 PIK3CA SNP Missense 3 178936092 A C 11 90 BRCA BR-0005 MUC4 SNP Missense 3 195511884 G C 40 53 BRCA BR-0005 PCDHGB1 SNP Missense 5 140731116 C T 30 56 BRCA BR-0005 DPYSL3 SNP Synonymous 5 146795426 C A 21 80 BRCA BR-0005 UIMC1 SNP Missense 5 176397717 A G 5 54 BRCA BR-0005 PTPRK SNP Synonymous 6 128326380 A T 15 54 BRCA BR-0005 HLA-DQA1 DEL Frame_Shift_Del 6 32610142 TTCTGTCTCTC - 64 42 BRCA BR-0005 MLL3 SNP Nonsense 7 151877822 G A 47 77 BRCA BR-0005 TRRAP SNP Synonymous 7 98569565 G A 45 69 BRCA BR-0005 TRPM6 SNP Splice_site 9 77354640 C T 24 100 BRCA BR-0006 ATP8B2 SNP Synonymous 1 154321573 C T 23 30 BRCA BR-0006 DDX59 SNP Splice_site 1 200633212 G C 46 52 BRCA BR-0006 VN1R5 SNP Missense 1 247420223 G T 41 48 BRCA BR-0006 MLLT10 SNP Splice_site 10 22016857 G T 39 91 BRCA BR-0006 MTPAP INS De_novo_Start_OutOfFrame 10 30638207 - A 28 50 BRCA BR-0006 MCAM SNP Synonymous 11 119182252 G A 40 43 BRCA BR-0006 DUSP16 SNP Missense 12 12673994 C A 32 65 BRCA BR-0006 ZNF605 SNP Nonsense 12 133502255 G A 45 53 BRCA BR-0006 NRIP2 SNP Missense 12 2939957 G A 39 41 BRCA BR-0006 C12orf26 SNP Missense 12 82832548 G C 33 85 BRCA BR-0006 C14orf37 SNP Missense 14 58605827 T G 60 50 BRCA BR-0006 COQ7 SNP Missense 16 19088649 G A 45 95 BRCA BR-0006 FAM86A SNP Missense 16 5140136 C T 27 72 BRCA BR-0006 TEX14 SNP Missense 17 56729307 C T 32 52 BRCA BR-0006 SDK2 SNP Missense 17 71391413 C T 23 95 BRCA BR-0006 ZNF415 SNP Missense 19 53612291 G A 42 49 BRCA BR-0006 ZNF415 SNP Missense 19 53612514 G A 45 61 BRCA BR-0006 ZNF415 SNP Missense 19 53612535 G C 45 56 BRCA BR-0006 ZNF415 SNP Synonymous 19 53612689 G A 45 42 BRCA BR-0006 ZNF415 SNP Missense 19 53612750 G A 33 54 BRCA BR-0006 NLRP11 SNP De_novo_Start_OutOfFrame 19 56348081 G A 40 51 BRCA BR-0006 RAPH1 SNP Missense 2 204304926 G A 37 87 BRCA BR-0006 COL6A3 SNP Missense 2 238289891 C T 26 54 BRCA BR-0006 MRPS5 SNP Splice_Site_SNP 2 95767421 C T 20 84 BRCA BR-0006 HUWE1 SNP Missense 23 53579343 C T 30 63 BRCA BR-0006 SI SNP Missense 3 164785170 G T 47 89 BRCA BR-0006 MUC4 SNP Missense 3 195511208 T G 59 39 BRCA BR-0006 TRNT1 SNP Synonymous 3 3170862 G A 33 53 BRCA BR-0006 KIAA1109 SNP Missense 4 123176349 C T 32 79 BRCA BR-0006 SCLT1 SNP Missense 4 129867300 C T 19 44 BRCA BR-0006 BOD1L SNP Nonsense 4 13589337 G C 45 65 BRCA BR-0006 BOD1L SNP Missense 4 13590372 G C 45 51 BRCA BR-0006 TADA2B SNP Missense 4 7056746 A C 6 76 BRCA BR-0006 SPEF2 SNP Missense 5 35654704 C T 29 78 BRCA BR-0006 ZDHHC11 SNP Missense 5 843766 C T 19 50 BRCA BR-0006 C6orf170 SNP Missense 6 121624852 G C 45 80 BRCA BR-0006 CTTNBP2 SNP Missense 7 117375380 C T 30 86 BRCA BR-0006 MAGI2 SNP Missense 7 77885292 C A 30 100 BRCA BR-0006 KIAA0649 SNP Missense 9 138377526 G C 33 47 BRCA BR-0007 SH3BP5L SNP Missense_Mutation 1 249106422 G A 37 55 BRCA BR-0007 CNKSR1 SNP Missense_Mutation 1 26515296 G A 39 40 BRCA BR-0007 TRIM8 SNP Silent 10 104417102 G A 45 83 BRCA BR-0007 OR10Q1 SNP Silent 11 57995595 G A 39 38 BRCA BR-0007 DDX47 SNP Missense_Mutation 12 12975628 C T 31 60 BRCA BR-0007 KRT83 SNP Silent 12 52711516 G A 40 50 BRCA BR-0007 FLT1 SNP Nonsense_Mutation 13 28886147 G A 45 100 BRCA BR-0007 TP53 SNP Nonsense_Mutation 17 7578382 G C 45 58 BRCA BR-0007 TP53 SNP Missense_Mutation 17 7579476 G C 41 50 BRCA BR-0007 PRAME SNP Missense_Mutation 22 22892602 C T 32 50 BRCA BR-0007 ATP2B3 SNP Missense_Mutation 23 152845595 G A 37 81 BRCA BR-0007 HSD17B13 SNP Missense_Mutation 4 88236675 T G 59 66 BRCA BR-0007 PKHD1 SNP Missense_Mutation 6 51892978 T C 52 64 BRCA BR-0007 DNAH11 SNP Missense_Mutation 7 21723418 C T 28 87 BRCA BR-0007 PKD1L1 SNP Missense_Mutation 7 47933497 C T 29 85 BRCA BR-0007 PON1 SNP Missense_Mutation 7 94935641 G A 45 72 BRCA BR-0007 CYP11B2 SNP Silent 8 143999032 C T 21 53 BRCA BR-0008 RASAL2 SNP Nonsense_Mutation 1 178427431 C T 19 61 BRCA BR-0008 C1orf107 SNP Missense_Mutation 1 210006574 G A 33 56 BRCA BR-0008 CAPN9 SNP Missense_Mutation 1 230898462 C T 23 72 BRCA BR-0008 GPR157 SNP Missense_Mutation 1 9165652 G A 34 72 BRCA BR-0008 CUBN SNP Missense_Mutation 10 16882983 C T 25 70 BRCA BR-0008 RBP4 SNP Missense_Mutation 10 95360718 C G 31 72 BRCA BR-0008 INTS5 SNP Silent 11 62415827 C T 25 53 BRCA BR-0008 ACVR1B SNP Missense_Mutation 12 52369198 C T 26 85 BRCA BR-0008 LOC100240734 SNP Missense 12 54496070 G T 42 50 BRCA BR-0008 EPYC SNP Nonsense 12 91365699 G A 37 68 BRCA BR-0008 AHNAK2 SNP Synonymous 14 105411957 G A 40 51 BRCA BR-0008 IPO4 SNP Missense_Mutation 14 24652006 C G 29 75 BRCA BR-0008 PPP2R5E SNP Missense_Mutation 14 63858701 G C 36 83 BRCA BR-0008 ZNF205 SNP Missense_Mutation 16 3169737 C T 19 80 BRCA BR-0008 DNAH9 SNP Missense 17 11738175 C T 25 83 BRCA BR-0008 TUSC5 SNP Nonsense 17 1201547 C T 29 57 BRCA BR-0008 CRLF3 SNP Nonsense_Mutation 17 29112961 G A 45 63 BRCA BR-0008 TP53 SNP Missense_Mutation 17 7577085 C T 32 80 BRCA BR-0008 CTAGE1 SNP Nonsense 18 19996850 G A 45 56 BRCA BR-0008 CYP4F12 SNP Nonsense_Mutation 19 15784450 G A 41 55 BRCA BR-0008 ZNF317 SNP Splice_Site_SNP 19 9266600 G A 33 66 BRCA BR-0008 ZNF317 SNP Missense_Mutation 19 9268043 G A 41 69 BRCA BR-0008 ABCB11 SNP Silent 2 169814522 G A 40 52 BRCA BR-0008 TTN SNP Missense_Mutation 2 179594483 G T 33 76 BRCA BR-0008 DGKD SNP Missense_Mutation 2 234357915 C T 29 76 BRCA BR-0008 OR6B3 SNP Synonymous 2 240984887 A G 9 47 BRCA BR-0008 C20orf186 SNP Nonsense_Mutation 20 31673924 C T 27 49 BRCA BR-0008 SLC5A3 SNP Missense_Mutation 21 35468952 G C 45 70 BRCA BR-0008 TTC28 SNP Missense 22 28692209 C T 27 98 BRCA BR-0008 WDR13 INS Frame_Shift_Ins 23 48457759 - G 31 63 BRCA BR-0008 WNK3 SNP Missense_Mutation 23 54275888 C G 32 77 BRCA BR-0008 SH3PXD2B SNP Missense_Mutation 5 171785803 T A 50 85 BRCA BR-0008 RASA1 INS Frame_Shift_Ins 5 86564697 - C 46 56 BRCA BR-0008 LNPEP SNP Silent 5 96315176 C T 31 48 BRCA BR-0008 AGAP3 SNP Missense_Mutation 7 150815383 G C 45 93 BRCA BR-0008 ANXA13 SNP Nonsense_Mutation 8 124707946 T A 61 62 BRCA BR-0008 RHPN1 SNP Missense_Mutation 8 144464682 C T 25 39 BRCA BR-0008 WHSC1L1 SNP Missense_Mutation 8 38184356 C T 32 87 BRCA BR-0008 BRD3 SNP Synonymous 9 136905224 C A 27 43 BRCA BR-0008 LHX3 SNP Missense_Mutation 9 139091539 T C 60 62 BRCA BR-0008 PNPLA7 SNP Silent 9 140414394 C T 27 44 BRCA BR-0009 HAO2 SNP Missense_Mutation 1 119925610 G T 33 55 BRCA BR-0009 PDE4DIP SNP Splice_Site_SNP 1 145017906 G A 46 57 BRCA BR-0009 KIRREL SNP Missense 1 158061235 T A 50 87 BRCA BR-0009 C1orf95 SNP Silent 1 226784570 C T 28 73 BRCA BR-0009 LOXL4 SNP Missense_Mutation 10 100013406 C T 27 96 BRCA BR-0009 DNMBP SNP Silent 10 101643817 C T 32 48 BRCA BR-0009 PDCD11 SNP Silent 10 105187125 C T 30 52 BRCA BR-0009 DMBT1 SNP Missense_Mutation 10 124339172 G T 42 67 BRCA BR-0009 OPN4 SNP Missense_Mutation 10 88422014 C A 26 99 BRCA BR-0009 OR10G9 SNP Missense 11 123893973 C T 30 51 BRCA BR-0009 DGKZ SNP Missense_Mutation 11 46397143 G C 33 82 BRCA BR-0009 PRG3 SNP Missense_Mutation 11 57145237 C A 21 24 BRCA BR-0009 TRPT1 SNP Missense_Mutation 11 63992129 G T 47 88 BRCA BR-0009 DKFZp761E198 SNP Missense_Mutation 11 65546210 C A 23 50 BRCA BR-0009 CD248 SNP Silent 11 66083472 G A 34 80 BRCA BR-0009 GDPD4 SNP Missense_Mutation 11 76956331 G A 48 77 BRCA BR-0009 TFCP2 SNP Nonsense 12 51501051 G A 45 98 BRCA BR-0009 COL4A2 SNP Missense_Mutation 13 111117908 G T 35 86 BRCA BR-0009 GMPR2 SNP Missense_Mutation 14 24707681 G T 44 52 BRCA BR-0009 ARHGAP5 SNP Missense_Mutation 14 32563140 G C 33 87 BRCA BR-0009 SIX4 SNP Missense_Mutation 14 61186651 T G 63 74 BRCA BR-0009 FEM1B SNP Missense_Mutation 15 68583185 C G 30 85 BRCA BR-0009 CHD2 SNP Silent 15 93543795 G A 42 70 BRCA BR-0009 CIITA SNP Missense_Mutation 16 11002933 A G 8 49 BRCA BR-0009 CHD9 SNP Missense_Mutation 16 53330929 G C 45 99 BRCA BR-0009 WFIKKN1 DEL Frame_Shift_Del 16 682650 C - 30 58 BRCA BR-0009 CDRT1 SNP Missense 17 15522759 A T 12 65 BRCA BR-0009 MIDN SNP Silent 19 1255482 C A 30 53 BRCA BR-0009 ZNF571 SNP Missense 19 38057002 C T 17 52 BRCA BR-0009 RSPH6A SNP Missense_Mutation 19 46307617 C T 21 69 BRCA BR-0009 ZNF836 SNP Splice_site 19 52658128 T A 52 67 BRCA BR-0009 TFPT SNP Missense_Mutation 19 54617909 C G 24 68 BRCA BR-0009 LILRB5 INS Frame_Shift_Ins 19 54754838 - G 59 46 BRCA BR-0009 HSPBP1 SNP Missense_Mutation 19 55790841 G C 47 81 BRCA BR-0009 HNRNPM SNP Silent 19 8536244 A G 7 48 BRCA BR-0009 XIRP2 SNP Missense_Mutation 2 168104558 C A 17 50 BRCA BR-0009 IQCA1 INS Frame_Shift_Ins 2 237253214 - A 63 58 BRCA BR-0009 SUCLG1 SNP Missense 2 84652608 G C 33 49 BRCA BR-0009 MRPL30 SNP Missense_Mutation 2 99812076 G C 41 76 BRCA BR-0009 PLCB1 SNP Missense_Mutation 20 8630047 G A 39 84 BRCA BR-0009 DONSON SNP Missense_Mutation 21 34957003 C A 17 45 BRCA BR-0009 AIRE DEL Frame_Shift_Del 21 45712987 G - 46 41 BRCA BR-0009 RIMBP3 SNP Missense_Mutation 22 20458543 G A 38 55 BRCA BR-0009 GPRASP1 SNP Missense_Mutation 23 101912253 G A 45 63 BRCA BR-0009 WDR44 SNP Missense_Mutation 23 117543513 A G 10 89 BRCA BR-0009 MOSPD2 SNP Splice_site 23 14927105 C T 20 88 BRCA BR-0009 MAMLD1 SNP Synonymous 23 149681301 C A 22 52 BRCA BR-0009 DMD SNP Missense_Mutation 23 31140024 G T 47 95 BRCA BR-0009 DZIP3 SNP Silent 3 108388549 T G 53 71 BRCA BR-0009 CCDC39 SNP Synonymous 3 180397154 G A 41 56 BRCA BR-0009 ATP13A5 SNP Missense_Mutation 3 193039557 T A 50 52 BRCA BR-0009 KCNH8 SNP Silent 3 19479765 G C 45 52 BRCA BR-0009 ITIH3 SNP Synonymous 3 52830634 C A 21 53 BRCA BR-0009 ST3GAL6 SNP Missense 3 98489779 C G 21 79 BRCA BR-0009 TCOF1 SNP Missense_Mutation 5 149743797 G C 34 58 BRCA BR-0009 C5orf47 SNP Missense 5 173425222 T A 49 58 BRCA BR-0009 KIF2A SNP Nonsense 5 61649170 C T 25 95 BRCA BR-0009 LNPEP SNP Missense_Mutation 5 96358157 G C 45 55 BRCA BR-0009 PSORS1C1 SNP Splice_site 6 31106207 A C 10 46 BRCA BR-0009 NOTCH4 SNP Missense_Mutation 6 32164115 C T 25 75 BRCA BR-0009 COL11A2 SNP Silent 6 33141155 C G 25 49 BRCA BR-0009 GPR63 SNP Missense_Mutation 6 97246851 T A 51 50 BRCA BR-0009 ZAN SNP Silent 7 100344177 C G 30 54 BRCA BR-0009 ZC3HC1 SNP Missense_Mutation 7 129666086 C A 29 86 BRCA BR-0009 FERD3L SNP Missense_Mutation 7 19184937 C T 19 80 BRCA BR-0009 MACC1 SNP Missense_Mutation 7 20198632 T G 62 70 BRCA BR-0009 BLK SNP Missense 8 11418633 C G 32 63 BRCA BR-0009 GPR172A SNP Missense_Mutation 8 145583444 C G 32 53 BRCA BR-0009 NAT1 SNP Missense_Mutation 8 18080030 C G 32 48 BRCA BR-0009 PLEKHA2 SNP Missense_Mutation 8 38803686 C A 29 66 BRCA BR-0009 C9orf50 SNP Silent 9 132382030 G A 41 49 BRCA BR-0009 SARDH SNP Missense_Mutation 9 136532038 T G 59 37 BRCA BR-0010 FAM58B SNP Missense 1 200182899 G A 38 55 BRCA BR-0010 NLRP3 SNP Synonymous 1 247588380 C T 19 49 BRCA BR-0010 CCDC82 SNP Missense 11 96117518 G C 45 60 BRCA BR-0010 SMG6 SNP Missense 17 2075992 G A 42 76 BRCA BR-0010 MLLT6 SNP Nonsense 17 36872670 C T 25 73 BRCA BR-0010 TUBD1 SNP Missense 17 57955634 G A 42 97 BRCA BR-0010 GRB14 SNP Missense 2 165365281 C T 28 96 BRCA BR-0010 SLC12A5 SNP Missense 20 44682328 G A 41 78 BRCA BR-0010 SELK SNP Missense 3 53920922 T G 62 65 BRCA BR-0010 EGFR SNP Synonymous 7 55266531 C T 31 47 BRCA BR-0010 NOTCH1 SNP Missense 9 139391715 C T 27 99 BRCA BR-0011 CTSE SNP Silent 1 206325405 G C 47 67 BRCA BR-0011 KIAA0562 SNP Missense_Mutation 1 3747781 C A 21 61 BRCA BR-0011 TMTC2 SNP Splice_site 12 83250789 C T 26 64 BRCA BR-0011 YLPM1 SNP Nonsense_Mutation 14 75269347 C T 25 83 BRCA BR-0011 CDH13 SNP Silent 16 83520170 G A 38 45 BRCA BR-0011 DBF4B SNP Missense_Mutation 17 42828442 C T 31 52 BRCA BR-0011 METTL2A SNP Missense_Mutation 17 60518021 A G 6 88 BRCA BR-0011 APOH SNP Silent 17 64210608 A G 14 50 BRCA BR-0011 SALL3 SNP Silent 18 76753554 C T 23 11 BRCA BR-0011 GRIN3B SNP Missense_Mutation 19 1008916 G A 42 51 BRCA BR-0011 RYR1 SNP Missense_Mutation 19 38976259 G A 38 72 BRCA BR-0011 PRPF31 SNP Missense_Mutation 19 54632661 G C 34 63 BRCA BR-0011 CD320 SNP Missense_Mutation 19 8369998 C T 27 59 BRCA BR-0011 TRIP12 SNP Missense_Mutation 2 230638875 C T 31 99 BRCA BR-0011 MPHOSPH10 SNP Missense_Mutation 2 71357803 C T 23 54 BRCA BR-0011 LSS SNP Missense_Mutation 21 47647541 T A 58 50 BRCA BR-0011 BHLHB9 SNP Missense_Mutation 23 102004004 G T 33 53 BRCA BR-0011 MLL3 SNP Nonsense_Mutation 7 151874514 A C 13 91 BRCA BR-0011 CRHR2 SNP Silent 7 30705172 G A 39 42 BRCA BR-0011 XKR6 SNP Missense_Mutation 8 10755506 C T 23 80 BRCA BR-0011 HTRA4 SNP Missense_Mutation 8 38835643 G A 40 70 BRCA BR-0011 GNE SNP Missense_Mutation 9 36217489 T C 58 73 BRCA BR-0012 VANGL1 SNP Missense_Mutation 1 116227966 G A 45 97 BRCA BR-0012 LMX1A SNP Missense_Mutation 1 165182988 C T 29 87 BRCA BR-0012 MUC5B DNP Missense_Mutation 11 1269782 TC AA 50 42 BRCA BR-0012 RARRES3 SNP Splice_site 11 63313730 G C 34 68 BRCA BR-0012 NEUROD4 SNP Silent 12 55420940 C T 26 52 BRCA BR-0012 BEST3 SNP Missense_Mutation 12 70049312 G A 40 48 BRCA BR-0012 TLN2 SNP Missense_Mutation 15 63102181 G A 39 78 BRCA BR-0012 ITGA11 SNP Splice_site 15 68609701 C G 30 85 BRCA BR-0012 ZNF200 SNP Missense_Mutation 16 3274589 C A 18 49 BRCA BR-0012 TOP3A SNP Missense_Mutation 17 18196080 G A 47 57 BRCA BR-0012 GH1 SNP Missense_Mutation 17 61994713 G A 38 52 BRCA BR-0012 TP53 SNP Missense_Mutation 17 7578203 C T 17 96 BRCA BR-0012 ZNF579 SNP Missense_Mutation 19 56089367 C G 32 67 BRCA BR-0012 FBN3 SNP Silent 19 8197953 G A 40 45 BRCA BR-0012 GRB14 SNP Missense_Mutation 2 165476222 G A 43 81 BRCA BR-0012 ZDBF2 SNP Missense_Mutation 2 207174317 C G 32 48 BRCA BR-0012 C20orf79 SNP Missense_Mutation 20 18794833 C T 23 83 BRCA BR-0012 ZFP64 SNP Missense_Mutation 20 50701686 G A 39 83 BRCA BR-0012 SEPT6 SNP Missense_Mutation 23 118784013 C T 29 93 BRCA BR-0012 KIAA0226 SNP Nonsense_Mutation 3 197422826 C A 30 87 BRCA BR-0012 PLG SNP Silent 6 161139758 C T 19 50 BRCA BR-0012 RNF39 SNP Silent 6 30043414 C T 31 49 BRCA BR-0012 MDN1 SNP Missense_Mutation 6 90503569 C T 30 96 BRCA BR-0012 ROR2 SNP Missense_Mutation 9 94499726 G A 44 79 BRCA BR-0013 C1orf55 SNP Silent 1 226180103 G C 45 60 BRCA BR-0013 ARID4B SNP Missense_Mutation 1 235345485 G C 45 73 BRCA BR-0013 RNF214 SNP Missense_Mutation 11 117152044 C T 17 82 BRCA BR-0013 CAPRIN1 SNP Missense_Mutation 11 34118810 C G 29 63 BRCA BR-0013 CAMKK2 SNP Silent 12 121712165 G A 45 52 BRCA BR-0013 CACNA1C SNP Missense_Mutation 12 2763037 T C 60 90 BRCA BR-0013 ARID4A SNP Silent 14 58818024 A G 3 54 BRCA BR-0013 GABRG3 SNP Missense_Mutation 15 27765252 C A 26 99 BRCA BR-0013 EDC4 SNP Missense_Mutation 16 67914102 C A 30 48 BRCA BR-0013 GRIN2A SNP Missense_Mutation 16 9857885 C A 25 62 BRCA BR-0013 TAF15 SNP Missense_Mutation 17 34171801 G T 35 69 BRCA BR-0013 TAF15 DNP Missense_Mutation 17 34171886 GG TT 39 71 BRCA BR-0013 C17orf71 SNP Silent 17 57288879 G A 47 69 BRCA BR-0013 TULP2 SNP Missense_Mutation 19 49391511 T A 58 73 BRCA BR-0013 HSPBP1 SNP Missense_Mutation 19 55785814 G T 39 60 BRCA BR-0013 GPR155 SNP Silent 2 175337881 G A 45 59 BRCA BR-0013 SPEG SNP Missense_Mutation 2 220336955 T C 58 71 BRCA BR-0013 SRPK3 SNP Missense_Mutation 23 153049530 G C 38 53 BRCA BR-0013 STXBP5L SNP Missense_Mutation 3 120998705 C T 17 77 BRCA BR-0013 GPR98 SNP Missense_Mutation 5 89990293 G T 47 100 BRCA BR-0013 MLL3 SNP Silent 7 151846058 G A 37 12 BRCA BR-0013 NPC1L1 SNP Missense_Mutation 7 44579311 C T 19 50 BRCA BR-0013 C8orf58 SNP Missense_Mutation 8 22458565 G C 36 52 BRCA BR-0013 RGS20 SNP Missense_Mutation 8 54764557 G T 33 50 BRCA BR-0014 TAS1R3 SNP Missense_Mutation 1 1268388 G T 37 58 BRCA BR-0014 PRPF3 SNP Missense_Mutation 1 150307556 C G 29 67 BRCA BR-0014 GON4L SNP Missense_Mutation 1 155783447 G A 47 70 BRCA BR-0014 CNTN2 SNP Missense_Mutation 1 205034337 G A 37 94 BRCA BR-0014 TRAF3IP3 SNP Missense_Mutation 1 209949007 G A 41 60 BRCA BR-0014 KCTD3 SNP Missense_Mutation 1 215777537 T C 57 93 BRCA BR-0014 OBSCN SNP Missense_Mutation 1 228547468 C A 25 38 BRCA BR-0014 PCNXL2 SNP Missense_Mutation 1 233136220 G A 41 69 BRCA BR-0014 EIF4G2 SNP Silent 11 10824788 T C 52 59 BRCA BR-0014 HSPA8 SNP Missense_Mutation 11 122929394 C T 25 97 BRCA BR-0014 NUP98 SNP Missense_Mutation 11 3716733 G C 36 59 BRCA BR-0014 OR51T1 SNP Silent 11 4904056 C G 30 56 BRCA BR-0014 B3GAT3 SNP Missense_Mutation 11 62384115 C T 19 74 BRCA BR-0014 ODZ4 SNP Missense_Mutation 11 78412998 C T 31 100 BRCA BR-0014 LRCH1 SNP Silent 13 47303065 C G 29 57 BRCA BR-0014 SLC15A1 SNP Missense_Mutation 13 99337165 G T 42 82 BRCA BR-0014 EIF5 SNP Missense_Mutation 14 103803508 G C 37 86 BRCA BR-0014 CDKL1 SNP Missense_Mutation 14 50862503 C A 32 82 BRCA BR-0014 HS3ST3A1 SNP Missense_Mutation 17 13399585 G A 38 86 BRCA BR-0014 STAT3 SNP Missense_Mutation 17 40475143 G C 45 71 BRCA BR-0014 TP53 SNP Nonsense_Mutation 17 7578257 C A 30 96 BRCA BR-0014 NEDD4L SNP Silent 18 55983243 C T 19 64 BRCA BR-0014 ZNF544 SNP Missense_Mutation 19 58774064 C T 23 42 BRCA BR-0014 DNAH6 SNP Missense_Mutation 2 84806719 T A 51 55 BRCA BR-0014 PYGB SNP Missense_Mutation 20 25252057 G A 34 95 BRCA BR-0014 APCDD1L SNP Missense_Mutation 20 57036355 C T 27 67 BRCA BR-0014 GAB4 SNP Silent 22 17468870 G A 42 67 BRCA BR-0014 MAPK1 SNP Missense_Mutation 22 22160188 C A 19 99 BRCA BR-0014 PIWIL3 SNP Missense_Mutation 22 25151775 C T 27 61 BRCA BR-0014 KREMEN1 SNP Missense_Mutation 22 29533437 C T 23 92 BRCA BR-0014 NOX1 SNP Missense_Mutation 23 100103695 C A 24 90 BRCA BR-0014 IRS4 SNP Missense_Mutation 23 107977128 C T 23 39 BRCA BR-0014 ARSF SNP Silent 23 3030282 T C 51 49 BRCA BR-0014 DMD SNP Silent 23 31462649 C T 19 48 BRCA BR-0014 FOXP3 SNP Missense_Mutation 23 49108022 G A 40 51 BRCA BR-0014 STARD8 SNP Silent 23 67939226 G A 34 50 BRCA BR-0014 HDX SNP Silent 23 83616549 G A 47 30 BRCA BR-0014 BOC SNP Missense_Mutation 3 112969714 C T 27 57 BRCA BR-0014 TTC21A SNP Silent 3 39178393 C T 17 57 BRCA BR-0014 CLNK SNP Missense_Mutation 4 10566368 G C 43 62 BRCA BR-0014 C4orf41 SNP Missense_Mutation 4 184585201 G C 45 100 BRCA BR-0014 KIT SNP Silent 4 55597497 C T 27 44 BRCA BR-0014 SPARCL1 SNP Silent 4 88416274 A G 8 53 BRCA BR-0014 CEP120 SNP Silent 5 122708383 G A 41 42 BRCA BR-0014 PCDHAC1 SNP Missense_Mutation 5 140307691 G T 39 80 BRCA BR-0014 SERINC5 SNP Missense_Mutation 5 79498793 C T 27 100 BRCA BR-0014 REV3L SNP Missense_Mutation 6 111670433 G C 45 50 BRCA BR-0014 FNDC1 SNP Splice_site 6 159646752 C G 32 99 BRCA BR-0014 BTN3A1 SNP Silent 6 26408164 C T 21 44 BRCA BR-0014 FLNC SNP Silent 7 128475507 G A 38 6 BRCA BR-0014 TNPO3 SNP Missense_Mutation 7 128612584 T C 49 76 BRCA BR-0014 PARP12 SNP Missense_Mutation 7 139724424 G C 41 47 BRCA BR-0014 PDE1C SNP Silent 7 31876799 T G 55 58 BRCA BR-0014 EGFR SNP Missense_Mutation 7 55249058 G C 40 86 BRCA BR-0014 SNX31 SNP Splice_site 8 101586094 C A 29 77 BRCA BR-0014 OXR1 SNP Missense_Mutation 8 107715221 T C 55 92 BRCA BR-0014 IER5L SNP Missense_Mutation 9 131940291 G A 41 77 BRCA BR-0014 TRPM3 SNP Missense_Mutation 9 73206061 C T 27 98 BRCA BR-0015 C10orf93 SNP Missense_Mutation 10 134743221 C G 32 47 BRCA BR-0015 PFKFB3 SNP Missense_Mutation 10 6268302 G C 41 72 BRCA BR-0015 CES2 SNP Silent 16 66974520 C T 32 50 BRCA BR-0015 TP53 SNP Missense_Mutation 17 7577124 C T 18 81 BRCA BR-0015 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA BR-0015 LOX SNP Missense_Mutation 5 121413616 G A 42 60 BRCA BR-0015 DDO SNP Silent 6 110714134 G A 41 43 BRCA BR-0015 DLX6 SNP Silent 7 96639161 G A 35 56 BRCA BR-0016 B4GALNT4 SNP Missense_Mutation 11 375699 T G 59 52 BRCA BR-0016 INF2 SNP Splice_site 14 105246551 C T 30 95 BRCA BR-0016 ADAMTSL3 SNP Missense_Mutation 15 84694100 C T 32 61 BRCA BR-0016 SYNM SNP Missense_Mutation 15 99669901 C G 22 56 BRCA BR-0016 SLC38A8 SNP Missense_Mutation 16 84067024 C T 27 48 BRCA BR-0016 CPD SNP Missense_Mutation 17 28782390 T G 52 87 BRCA BR-0016 HIPK4 SNP Silent 19 40886680 A G 6 39 BRCA BR-0016 SF3B1 SNP Missense_Mutation 2 198266834 T C 62 93 BRCA BR-0016 ANKMY1 SNP Missense_Mutation 2 241468721 G A 40 37 BRCA BR-0016 ASB11 SNP Silent 23 15306051 G A 33 73 BRCA BR-0016 TMEM89 SNP Missense_Mutation 3 48658918 C T 27 62 BRCA BR-0016 HIST1H3B SNP Missense_Mutation 6 26031895 G A 37 98 BRCA BR-0016 FLNC SNP Silent 7 128492712 C T 23 17 BRCA BR-0016 MLL3 SNP Nonsense_Mutation 7 151878287 G A 45 98 BRCA BR-0016 PUF60 SNP Nonsense_Mutation 8 144900689 G A 46 97 BRCA BR-0017 AIM2 SNP Missense_Mutation 1 159033307 T A 55 67 BRCA BR-0017 RPS6KC1 SNP Missense_Mutation 1 213445967 T A 55 83 BRCA BR-0017 HEATR1 SNP Missense_Mutation 1 236730086 C T 19 98 BRCA BR-0017 KDM4A SNP Silent 1 44169771 C G 29 60 BRCA BR-0017 GRIP1 SNP Missense_Mutation 12 66814566 G C 47 81 BRCA BR-0017 INF2 SNP Splice_site 14 105246551 C T 30 95 BRCA BR-0017 RHCG SNP Missense_Mutation 15 90021181 C T 27 89 BRCA BR-0017 MAPK8IP3 SNP Missense_Mutation 16 1793344 G A 38 98 BRCA BR-0017 PAF1 SNP Missense_Mutation 19 39877419 C T 23 97 BRCA BR-0017 SLC4A10 SNP Missense_Mutation 2 162735785 C T 22 100 BRCA BR-0017 COL20A1 SNP Missense_Mutation 20 61938856 C T 23 60 BRCA BR-0017 KRTAP27-1 SNP Missense_Mutation 21 31709578 T C 63 39 BRCA BR-0017 ARHGEF9 SNP Missense_Mutation 23 62898266 G T 41 94 BRCA BR-0017 KIAA1407 SNP Missense_Mutation 3 113750490 A T 1 60 BRCA BR-0017 C3orf59 SNP Silent 3 192635612 G A 47 59 BRCA BR-0017 ROBO1 SNP Silent 3 78763650 G C 35 57 BRCA BR-0017 GDF9 SNP Missense_Mutation 5 132197894 T C 52 56 BRCA BR-0017 POLK SNP Splice_Site 5 74889875 G T 44 100 BRCA BR-0017 KRBA1 SNP Splice_site 7 149426279 G T 41 69 BRCA BR-0017 CNTLN SNP Missense_Mutation 9 17236495 G A 38 60 BRCA BR-0017 PCSK5 SNP Missense_Mutation 9 78773999 C T 27 100 BRCA BR-0018 C1orf114 SNP Missense_Mutation 1 169390893 G A 33 55 BRCA BR-0018 RAB4A SNP Silent 1 229433283 G A 37 53 BRCA BR-0018 OCA2 SNP Missense_Mutation 15 28200333 C T 30 89 BRCA BR-0018 C15orf55 SNP Missense_Mutation 15 34649678 C T 19 56 BRCA BR-0018 ZSWIM2 SNP Silent 2 187703805 G A 40 30 BRCA BR-0018 HK2 SNP Missense_Mutation 2 75107474 G A 47 81 BRCA BR-0018 AHCY SNP Missense_Mutation 20 32873409 C T 27 70 BRCA BR-0018 UROC1 SNP Missense_Mutation 3 126219638 G T 43 75 BRCA BR-0018 FEZF2 SNP Missense_Mutation 3 62355829 G A 38 58 BRCA BR-0018 TMEM66 SNP Missense_Mutation 8 29927265 T G 55 53 BRCA BR-0019 TTF2 SNP Missense_Mutation 1 117634014 A T 13 51 BRCA BR-0019 HSPG2 SNP Missense_Mutation 1 22203039 C T 27 75 BRCA BR-0019 OBSCN SNP Silent 1 228528251 C G 22 39 BRCA BR-0019 ARHGAP21 SNP Missense_Mutation 10 24889580 C T 31 90 BRCA BR-0019 UBE4A SNP Nonsense_Mutation 11 118261379 G T 41 100 BRCA BR-0019 OR5AK2 SNP Missense_Mutation 11 56756816 G A 40 55 BRCA BR-0019 ORAOV1 SNP Splice_site 11 69482778 C G 32 56 BRCA BR-0019 ARHGAP5 SNP Missense_Mutation 14 32560696 A G 12 92 BRCA BR-0019 RNMT SNP Nonsense_Mutation 18 13734469 G T 41 67 BRCA BR-0019 ALPK2 SNP Silent 18 56204173 G A 41 47 BRCA BR-0019 ZNF99 SNP Missense_Mutation 19 22952070 G C 42 57 BRCA BR-0019 SLC7A10 SNP Missense_Mutation 19 33702036 C T 23 48 BRCA BR-0019 SIGLEC10 SNP Missense_Mutation 19 51918546 G A 43 53 BRCA BR-0019 PROKR1 SNP Missense_Mutation 2 68882371 C T 19 94 BRCA BR-0019 ELMO2 SNP Missense_Mutation 20 45023106 C T 32 96 BRCA BR-0019 HDAC10 SNP Splice_site 22 50684728 A G 6 47 BRCA BR-0019 NISCH SNP Missense_Mutation 3 52522504 A T 2 50 BRCA BR-0019 LHFPL4 SNP Missense_Mutation 3 9547657 T C 62 71 BRCA BR-0019 C5orf42 SNP Missense_Mutation 5 37138831 C A 26 48 BRCA BR-0019 WDYHV1 SNP Missense_Mutation 8 124453646 A C 1 47 BRCA BR-0019 GDAP1 SNP Silent 8 75262732 G C 38 67 BRCA BR-0019 DOLK SNP Missense_Mutation 9 131708846 A G 10 61 BRCA BR-0020 PEF1 SNP Missense_Mutation 1 32098213 G A 39 77 BRCA BR-0020 ADPRHL2 SNP Missense_Mutation 1 36558815 A T 16 78 BRCA BR-0020 ATP8A2 SNP Silent 13 26163819 G A 45 65 BRCA BR-0020 ADAMTS7 SNP Missense_Mutation 15 79058988 C T 26 70 BRCA BR-0020 AFG3L2 SNP Missense_Mutation 18 12363840 C T 20 100 BRCA BR-0020 MAP2 SNP Missense_Mutation 2 210560819 G A 40 84 BRCA BR-0020 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA BR-0020 HEATR7B2 SNP Silent 5 41032909 G A 40 46 BRCA BR-0020 NLN SNP Missense_Mutation 5 65088313 G A 44 84 BRCA BR-0020 KIAA1586 SNP Missense_Mutation 6 56919311 C T 31 45 BRCA BR-0021 ARMC3 SNP Missense_Mutation 10 23270605 C T 18 88 BRCA BR-0021 GPR152 SNP Silent 11 67219092 C T 23 36 BRCA BR-0021 SRRM4 SNP Missense_Mutation 12 119592106 C T 27 64 BRCA BR-0021 RBL2 SNP Missense_Mutation 16 53485693 A G 4 92 BRCA BR-0021 DHRS7B SNP Nonsense_Mutation 17 21086988 C T 25 60 BRCA BR-0021 MYLK SNP Missense_Mutation 3 123418920 G A 40 66 BRCA BR-0021 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA BR-0021 SLC22A5 SNP Missense_Mutation 5 131726446 T G 56 91 BRCA BR-0021 CENPK SNP Missense_Mutation 5 64814429 T C 51 86 BRCA BR-0021 DNAJB9 SNP Missense_Mutation 7 108213653 G A 48 97 BRCA BR-0021 WDR85 SNP Splice_site 9 140459056 T G 49 87 BRCA BR-0022 SH2D2A SNP Missense_Mutation 1 156779105 C T 21 50 BRCA BR-0022 FBXO28 SNP Missense_Mutation 1 224345272 G A 35 99 BRCA BR-0022 SIPA1L2 SNP Missense_Mutation 1 232581473 G C 44 82 BRCA BR-0022 MACF1 SNP Missense_Mutation 1 39924799 C G 24 61 BRCA BR-0022 OSBPL9 SNP Nonsense_Mutation 1 52227547 C T 29 84 BRCA BR-0022 FAM159A SNP Missense_Mutation 1 53122605 C T 19 48 BRCA BR-0022 TNFRSF25 SNP Missense_Mutation 1 6524475 C T 21 81 BRCA BR-0022 C10orf68 SNP Missense_Mutation 10 33134840 G C 33 60 BRCA BR-0022 SIK2 SNP Missense_Mutation 11 111572257 G T 44 100 BRCA BR-0022 CDHR5 SNP Missense_Mutation 11 619490 C T 30 49 BRCA BR-0022 FAT3 SNP Missense_Mutation 11 92543127 G T 35 48 BRCA BR-0022 PARP11 SNP Splice_Site 12 3935401 T G 55 82 BRCA BR-0022 MUDENG SNP Missense_Mutation 14 57741543 C T 30 76 BRCA BR-0022 DAAM1 SNP Silent 14 59798572 A G 5 44 BRCA BR-0022 C14orf4 SNP Silent 14 77493191 C A 31 49 BRCA BR-0022 NSMCE1 SNP Missense_Mutation 16 27244392 C A 26 65 BRCA BR-0022 CDH11 SNP Silent 16 65038677 C A 26 53 BRCA BR-0022 CDH1 SNP Missense_Mutation 16 68853271 G A 41 42 BRCA BR-0022 KIAA0195 SNP Missense_Mutation 17 73490878 C T 28 98 BRCA BR-0022 TP53 SNP Missense_Mutation 17 7574018 G A 38 59 BRCA BR-0022 OR10H1 SNP Missense_Mutation 19 15918378 A T 8 73 BRCA BR-0022 UNC13A SNP Splice_Site 19 17760323 C T 31 92 BRCA BR-0022 LRP1B SNP Missense_Mutation 2 141680674 C A 25 96 BRCA BR-0022 TTN SNP Missense_Mutation 2 179462676 G T 35 100 BRCA BR-0022 COL5A2 SNP Silent 2 189931188 G A 39 51 BRCA BR-0022 SPEG SNP Missense_Mutation 2 220347878 G A 39 65 BRCA BR-0022 MAP4K3 SNP Nonsense_Mutation 2 39542460 C A 32 90 BRCA BR-0022 PIGT SNP Silent 20 44054340 C T 23 45 BRCA BR-0022 TTC3 SNP Missense_Mutation 21 38494265 T G 49 78 BRCA BR-0022 DOCK11 SNP Missense_Mutation 23 117707913 C A 22 38 BRCA BR-0022 FRMPD4 SNP Silent 23 12728625 C T 21 79 BRCA BR-0022 GPR112 DNP Missense_Mutation 23 135432390 GG TT 47 60 BRCA BR-0022 SCML2 SNP Missense_Mutation 23 18264731 A C 8 50 BRCA BR-0022 USP11 SNP Silent 23 47106531 G A 46 58 BRCA BR-0022 ZDHHC15 SNP Missense_Mutation 23 74670677 C A 21 51 BRCA BR-0022 KLHL4 SNP Missense_Mutation 23 86868897 C A 32 55 BRCA BR-0022 HRH1 SNP Missense_Mutation 3 11301376 G A 37 57 BRCA BR-0022 CAND2 SNP Silent 3 12858900 C T 21 46 BRCA BR-0022 ZNF385D SNP Nonsense_Mutation 3 21606096 G T 46 88 BRCA BR-0022 NKTR SNP Missense_Mutation 3 42679631 A T 11 62 BRCA BR-0022 MFSD8 SNP Missense_Mutation 4 128842696 G C 33 53 BRCA BR-0022 NPY1R SNP Missense_Mutation 4 164247125 G T 48 60 BRCA BR-0022 PAICS SNP Missense_Mutation 4 57318209 G A 45 92 BRCA BR-0022 BTNL3 SNP Missense_Mutation 5 180429675 C T 19 49 BRCA BR-0022 MAK SNP Missense_Mutation 6 10802132 G T 46 100 BRCA BR-0022 NUP43 SNP Missense_Mutation 6 150067084 C G 30 100 BRCA BR-0022 TBX18 SNP Missense_Mutation 6 85472272 T C 63 93 BRCA BR-0022 GABRR2 SNP Missense_Mutation 6 89977487 G A 41 100 BRCA BR-0022 OR2F1 SNP Missense_Mutation 7 143657974 T C 53 76 BRCA BR-0022 TMEM195 SNP Missense_Mutation 7 15584526 G C 36 51 BRCA BR-0022 DNAH11 SNP Missense_Mutation 7 21784157 C G 17 51 BRCA BR-0022 PGAM2 SNP Splice_site 7 44102361 C A 22 51 BRCA BR-0022 C9orf91 SNP Missense_Mutation 9 117389242 T C 49 74 BRCA BR-0022 ASTN2 SNP Silent 9 119188316 G T 47 49 BRCA BR-0022 DNAJA1 SNP Missense_Mutation 9 33036684 C A 30 96 BRCA BR-0022 HIATL1 SNP Silent 9 97218567 G C 40 21 BRCA BR-0023 TACC2 SNP Missense_Mutation 10 123969987 C T 23 81 BRCA BR-0023 PARD3 SNP Missense_Mutation 10 34606224 G A 33 99 BRCA BR-0023 ZNF503 SNP Missense_Mutation 10 77160930 C G 31 98 BRCA BR-0023 PLCB3 SNP Missense_Mutation 11 64031501 G A 41 84 BRCA BR-0023 ANKS1B SNP Missense_Mutation 12 100377945 G C 33 78 BRCA BR-0023 OR6C1 SNP Silent 12 55714476 C T 29 51 BRCA BR-0023 ARHGEF7 SNP Missense_Mutation 13 111862263 C T 29 97 BRCA BR-0023 BRCA2 SNP Missense_Mutation 13 32905104 G A 45 49 BRCA BR-0023 TDRD3 SNP Silent 13 61083912 C T 32 76 BRCA BR-0023 RPGRIP1 SNP Missense_Mutation 14 21816386 G C 33 80 BRCA BR-0023 MPP5 SNP Missense_Mutation 14 67746200 G C 45 91 BRCA BR-0023 BLM SNP Missense_Mutation 15 91354530 C A 21 70 BRCA BR-0023 IL4R SNP Missense_Mutation 16 27373616 G C 41 56 BRCA BR-0023 ZNF646 SNP Missense_Mutation 16 31089517 G C 33 61 BRCA BR-0023 ITGA3 SNP Nonsense_Mutation 17 48156542 G T 41 73 BRCA BR-0023 C17orf47 SNP Missense_Mutation 17 56621388 C T 32 78 BRCA BR-0023 FASN SNP Silent 17 80048914 C T 29 57 BRCA BR-0023 DSG4 SNP Missense_Mutation 18 28971090 C T 28 68 BRCA BR-0023 SLC39A6 SNP Missense_Mutation 18 33706384 G A 33 61 BRCA BR-0023 SF4 SNP Missense_Mutation 19 19387797 T C 63 85 BRCA BR-0023 HSD17B14 SNP Missense_Mutation 19 49337559 C T 29 70 BRCA BR-0023 BIRC8 SNP Missense_Mutation 19 53793093 G A 42 55 BRCA BR-0023 ZDBF2 SNP Silent 2 207146579 G A 33 62 BRCA BR-0023 WNT10A SNP Missense_Mutation 2 219755014 C G 32 63 BRCA BR-0023 TET3 SNP Missense_Mutation 2 74274708 C T 32 54 BRCA BR-0023 MAVS SNP Silent 20 3846533 C G 26 50 BRCA BR-0023 LAMA5 SNP Missense_Mutation 20 60903035 C T 29 97 BRCA BR-0023 DOPEY2 SNP Silent 21 37618469 G A 37 43 BRCA BR-0023 FOXR2 SNP Silent 23 55650192 C A 26 45 BRCA BR-0023 ATP2B2 SNP Missense_Mutation 3 10417161 C T 31 96 BRCA BR-0023 SETD2 SNP Missense_Mutation 3 47161964 C A 32 71 BRCA BR-0023 ZNF654 SNP Nonsense_Mutation 3 88189217 C T 29 63 BRCA BR-0023 MFSD8 SNP Missense_Mutation 4 128842783 G C 33 74 BRCA BR-0023 WDR36 SNP Missense_Mutation 5 110462489 T A 58 72 BRCA BR-0023 ANKRD55 SNP Missense_Mutation 5 55479372 C G 32 87 BRCA BR-0023 AP3B1 SNP Silent 5 77590332 C T 31 51 BRCA BR-0023 ZFYVE16 SNP Missense_Mutation 5 79755263 G A 41 97 BRCA BR-0023 DOCK4 SNP Missense_Mutation 7 111398805 C T 30 86 BRCA BR-0023 PPP3CC SNP Missense_Mutation 8 22396994 C A 27 76 BRCA BR-0023 DUSP26 SNP Missense_Mutation 8 33449535 G T 46 65 BRCA BR-0023 TAL2 SNP Missense_Mutation 9 108424921 G A 45 100 BRCA BR-0024 CHD1L SNP Missense_Mutation 1 146758064 G T 34 50 BRCA BR-0024 KLHDC7A SNP Missense_Mutation 1 18807489 G C 41 56 BRCA BR-0024 PLEKHA6 SNP Missense_Mutation 1 204197314 G C 40 57 BRCA BR-0024 ENKUR SNP Missense_Mutation 10 25273696 C T 29 80 BRCA BR-0024 MUC5B SNP Missense_Mutation 11 1256668 A C 6 51 BRCA BR-0024 GPR133 SNP Silent 12 131623751 C T 29 56 BRCA BR-0024 ARHGAP9 SNP Missense_Mutation 12 57873071 C T 26 80 BRCA BR-0024 INTS6 SNP De_novo_Start_InFrame 13 51957961 G T 36 49 BRCA BR-0024 STRA6 SNP Missense_Mutation 15 74494523 T C 55 43 BRCA BR-0024 VWA3A SNP Missense_Mutation 16 22163878 C T 19 81 BRCA BR-0024 KSR1 SNP Missense_Mutation 17 25932686 T G 59 91 BRCA BR-0024 TP53 SNP Nonsense_Mutation 17 7578212 G A 37 66 BRCA BR-0024 NARS SNP Missense_Mutation 18 55274843 G C 43 98 BRCA BR-0024 PLA2G4C SNP Missense_Mutation 19 48607951 C T 23 68 BRCA BR-0024 ZNF667 SNP Missense_Mutation 19 56953522 T G 51 59 BRCA BR-0024 ZDBF2 SNP Missense_Mutation 2 207171719 G A 45 56 BRCA BR-0024 CD40 DNP Missense_Mutation 20 44757572 CC TT 30 57 BRCA BR-0024 COL18A1 SNP Silent 21 46932249 G A 37 42 BRCA BR-0024 CNTN6 SNP Missense_Mutation 3 1320178 C T 23 90 BRCA BR-0024 PIK3CA SNP Silent 3 178947195 A G 14 46 BRCA BR-0024 PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA BR-0024 MCF2L2 SNP Missense_Mutation 3 182925484 A G 1 68 BRCA BR-0024 GOPC SNP Missense_Mutation 6 117923369 A C 14 90 BRCA BR-0024 SPACA1 SNP Missense_Mutation 6 88773865 T G 52 75 BRCA BR-0024 PNPLA8 SNP Missense_Mutation 7 108138013 A C 2 92 BRCA BR-0024 ABCA13 SNP Missense_Mutation 7 48311477 A T 4 42 BRCA BR-0024 CRISPLD1 SNP Missense_Mutation 8 75927075 A G 5 89 BRCA BR-0024 FAM120A SNP Missense_Mutation 9 96259787 A C 10 90 BRCA BR-0025 PALMD SNP Missense_Mutation 1 100159613 A G 12 68 BRCA BR-0025 PTPN22 SNP Missense_Mutation 1 114380754 T A 54 52 BRCA BR-0025 SETDB1 SNP Missense_Mutation 1 150936764 A C 14 89 BRCA BR-0025 TUFT1 SNP Splice_Site 1 151538638 G T 35 71 BRCA BR-0025 ASH1L SNP Silent 1 155327481 A G 6 44 BRCA BR-0025 SLAMF1 SNP Missense_Mutation 1 160607049 C T 30 72 BRCA BR-0025 NDUFS2 SNP Missense_Mutation 1 161183684 A G 8 75 BRCA BR-0025 FCRLB SNP Missense_Mutation 1 161693176 A G 16 47 BRCA BR-0025 POGK SNP Nonsense_Mutation 1 166819567 G A 47 74 BRCA BR-0025 ADCY10 SNP Missense_Mutation 1 167817619 G A 45 76 BRCA BR-0025 CACNA1E SNP Missense_Mutation 1 181690901 C A 19 99 BRCA BR-0025 SOX13 SNP Missense_Mutation 1 204086730 A C 8 83 BRCA BR-0025 MYOM3 SNP Missense_Mutation 1 24418793 T C 54 62 BRCA BR-0025 ZNF692 SNP Silent 1 249144513 G A 35 16 BRCA BR-0025 KIAA1522 SNP Missense_Mutation 1 33235952 G A 38 69 BRCA BR-0025 GNL2 SNP Missense_Mutation 1 38034883 C G 21 57 BRCA BR-0025 MPL SNP Silent 1 43805228 C A 22 54 BRCA BR-0025 CYP4X1 SNP Missense_Mutation 1 47489583 C G 28 63 BRCA BR-0025 ABCA4 SNP Silent 1 94476403 G A 36 62 BRCA BR-0025 MYO3A SNP Missense_Mutation 10 26442808 G A 48 50 BRCA BR-0025 SVIL SNP Missense_Mutation 10 29822154 G A 40 77 BRCA BR-0025 LRIT1 SNP Missense_Mutation 10 85993835 C A 21 97 BRCA BR-0025 GRID1 SNP Missense_Mutation 10 87484247 G A 43 96 BRCA BR-0025 PANK1 SNP Silent 10 91353002 G A 47 79 BRCA BR-0025 GOLGA7B SNP Silent 10 99623945 C G 28 45 BRCA BR-0025 C2CD2L SNP Missense_Mutation 11 118983507 G A 39 94 BRCA BR-0025 PDZD3 SNP Nonsense_Mutation 11 119059822 C T 25 59 BRCA BR-0025 BSX SNP Missense_Mutation 11 122852322 A C 3 75 BRCA BR-0025 IGSF22 SNP Missense_Mutation 11 18741762 A T 12 79 BRCA BR-0025 TSPAN18 SNP Missense_Mutation 11 44931278 C T 26 69 BRCA BR-0025 OR9I1 SNP Missense_Mutation 11 57886432 C G 25 59 BRCA BR-0025 CPSF7 SNP Missense_Mutation 11 61178426 G A 39 65 BRCA BR-0025 C11orf9 SNP Missense_Mutation 11 61543874 G A 40 94 BRCA BR-0025 TUT1 SNP Missense_Mutation 11 62343060 G A 42 46 BRCA BR-0025 CAPN1 SNP Silent 11 64953474 C G 23 48 BRCA BR-0025 YIF1A SNP Missense_Mutation 11 66055748 G A 42 62 BRCA BR-0025 KDM2A SNP Missense_Mutation 11 67017699 G T 39 74 BRCA BR-0025 DHCR7 SNP Missense_Mutation 11 71152445 G C 34 60 BRCA BR-0025 RELT SNP Silent 11 73105585 G A 46 65 BRCA BR-0025 PNPLA2 SNP Missense_Mutation 11 822571 C T 23 58 BRCA BR-0025 PIWIL4 SNP Missense_Mutation 11 94340790 G T 43 96 BRCA BR-0025 ANKRD13A SNP Missense_Mutation 12 110457090 G A 48 71 BRCA BR-0025 MYL2 SNP Missense_Mutation 12 111351120 G T 43 80 BRCA BR-0025 TRAFD1 SNP Silent 12 112578694 G A 35 63 BRCA BR-0025 SMUG1 SNP Missense_Mutation 12 54575935 G A 46 52 BRCA BR-0025 RDH16 SNP Missense_Mutation 12 57345829 G A 39 69 BRCA BR-0025 VWF SNP Silent 12 6091120 G C 35 50 BRCA BR-0025 LPAR5 SNP Silent 12 6730295 G A 40 54 BRCA BR-0025 CARKD SNP Missense_Mutation 13 111290733 C A 24 98 BRCA BR-0025 FRY SNP Silent 13 32783129 C T 19 37 BRCA BR-0025 SCEL SNP Splice_site 13 78191996 A G 11 74 BRCA BR-0025 EDNRB SNP Missense_Mutation 13 78493538 G C 41 57 BRCA BR-0025 SOX21 SNP Silent 13 95364127 G A 40 68 BRCA BR-0025 EVL SNP Missense_Mutation 14 100602286 C A 26 50 BRCA BR-0025 WDR25 SNP Silent 14 100847519 C T 27 33 BRCA BR-0025 WDR20 SNP Missense_Mutation 14 102606473 G T 43 59 BRCA BR-0025 TDRD9 SNP Silent 14 104491930 C T 17 45 BRCA BR-0025 GPR132 SNP Silent 14 105517826 G T 35 46 BRCA BR-0025 OR6S1 SNP Missense_Mutation 14 21109399 C A 21 95 BRCA BR-0025 SALL2 SNP Missense_Mutation 14 21992262 A G 11 65 BRCA BR-0025 HECTD1 SNP Splice_site 14 31583545 T C 52 92 BRCA BR-0025 CLEC14A SNP Missense_Mutation 14 38724314 C T 27 36 BRCA BR-0025 SMOC1 SNP Missense_Mutation 14 70444664 G T 43 67 BRCA BR-0025 RGS6 SNP Missense_Mutation 14 72985096 C G 24 58 BRCA BR-0025 ABCD4 SNP Missense_Mutation 14 74761882 G A 37 84 BRCA BR-0025 CA12 SNP Missense_Mutation 15 63637717 C T 23 96 BRCA BR-0025 GOLGA6A SNP Splice_Site 15 74372956 C A 17 55 BRCA BR-0025 FAH SNP Silent 15 80473473 G A 46 72 BRCA BR-0025 C15orf42 SNP Silent 15 90164769 T C 55 52 BRCA BR-0025 IGF1R SNP Missense_Mutation 15 99456467 G A 40 60 BRCA BR-0025 LRRC28 SNP Missense_Mutation 15 99903389 G T 39 63 BRCA BR-0025 HYDIN SNP Missense_Mutation 16 70902549 C A 21 87 BRCA BR-0025 PLCG2 SNP Silent 16 81929425 C T 19 48 BRCA BR-0025 ACSF3 SNP Silent 16 89167347 C T 27 37 BRCA BR-0025 CARHSP1 SNP Missense_Mutation 16 8952304 C T 19 59 BRCA BR-0025 MLLT6 SNP Missense_Mutation 17 36871908 C T 19 58 BRCA BR-0025 AOC3 SNP Missense_Mutation 17 41007507 A G 7 56 BRCA BR-0025 SLC25A39 SNP Missense_Mutation 17 42397591 C T 31 82 BRCA BR-0025 PELP1 SNP Missense_Mutation 17 4576332 G A 41 61 BRCA BR-0025 TBX21 SNP Missense_Mutation 17 45822469 C T 23 59 BRCA BR-0025 SLC35B1 SNP Silent 17 47782603 C T 19 40 BRCA BR-0025 SPATA20 SNP Missense_Mutation 17 48625676 C T 27 50 BRCA BR-0025 RNF43 SNP Missense_Mutation 17 56492739 C G 18 93 BRCA BR-0025 SSTR2 SNP Nonsense_Mutation 17 71165500 G A 42 53 BRCA BR-0025 SDK2 SNP Silent 17 71361527 G A 38 44 BRCA BR-0025 EVPL SNP Missense_Mutation 17 74014660 G A 38 56 BRCA BR-0025 SEPT9 SNP Silent 17 75484932 C A 23 13 BRCA BR-0025 RNF213 SNP Missense_Mutation 17 78320176 G A 40 57 BRCA BR-0025 SIRT7 SNP Missense_Mutation 17 79872517 G A 40 55 BRCA BR-0025 CDH7 SNP Missense_Mutation 18 63477213 G A 36 77 BRCA BR-0025 KRI1 SNP Silent 19 10670053 C T 28 55 BRCA BR-0025 SMARCA4 SNP Missense_Mutation 19 11096874 C T 31 95 BRCA BR-0025 ZNF442 SNP Nonsense_Mutation 19 12461510 G A 40 46 BRCA BR-0025 HAPLN4 SNP Missense_Mutation 19 19369400 C T 27 89 BRCA BR-0025 CILP2 SNP Missense_Mutation 19 19654127 C T 27 55 BRCA BR-0025 LMNB2 SNP Missense_Mutation 19 2433969 C G 26 68 BRCA BR-0025 PRODH2 SNP Silent 19 36297460 C T 27 38 BRCA BR-0025 FCGBP SNP Missense_Mutation 19 40363246 G A 39 50 BRCA BR-0025 MEGF8 SNP Nonsense_Mutation 19 42837852 C T 27 69 BRCA BR-0025 PHLDB3 SNP Silent 19 44001342 A G 12 34 BRCA BR-0025 GPR4 SNP Missense_Mutation 19 46094913 G A 39 96 BRCA BR-0025 RSPH6A SNP Missense_Mutation 19 46318256 C A 24 41 BRCA BR-0025 FOXA3 SNP Silent 19 46376244 C T 19 44 BRCA BR-0025 ZC3H4 SNP Silent 19 47570630 G A 40 44 BRCA BR-0025 DHX34 SNP Missense_Mutation 19 47884531 G A 38 94 BRCA BR-0025 SULT2B1 SNP Missense_Mutation 19 49102536 G A 34 51 BRCA BR-0025 ZNF701 SNP Missense_Mutation 19 53086675 C T 19 24 BRCA BR-0025 ZNF772 SNP Missense_Mutation 19 57986454 A G 14 50 BRCA BR-0025 ZNF446 SNP Missense_Mutation 19 58988662 G A 38 82 BRCA BR-0025 PNPLA6 SNP Missense_Mutation 19 7607926 C T 25 79 BRCA BR-0025 ADAMTS10 SNP Missense_Mutation 19 8665901 C T 19 94 BRCA BR-0025 ST6GAL2 SNP Missense_Mutation 2 107459719 G A 39 54 BRCA BR-0025 NPHP1 SNP Missense_Mutation 2 110889304 T G 52 59 BRCA BR-0025 TPO SNP Missense_Mutation 2 1507741 G T 44 43 BRCA BR-0025 SF3B1 SNP Silent 2 198266160 C T 28 52 BRCA BR-0025 TNS1 SNP Missense_Mutation 2 218713165 G A 38 45 BRCA BR-0025 FBXO36 SNP Missense_Mutation 2 230841089 A G 14 51 BRCA BR-0025 OTOF SNP Missense_Mutation 2 26688597 T G 54 91 BRCA BR-0025 HEATR5B SNP Silent 2 37310546 G A 43 48 BRCA BR-0025 FOXN2 SNP Missense_Mutation 2 48602520 A G 14 72 BRCA BR-0025 CD207 SNP Missense_Mutation 2 71060983 C T 19 35 BRCA BR-0025 C2orf78 SNP Missense_Mutation 2 74042734 G A 33 55 BRCA BR-0025 TET3 SNP Silent 2 74326435 C T 27 43 BRCA BR-0025 SLC4A5 SNP Silent 2 74479458 G A 38 47 BRCA BR-0025 MRPL53 SNP Missense_Mutation 2 74699563 G C 39 66 BRCA BR-0025 SEMA4F SNP Missense_Mutation 2 74900892 G C 33 70 BRCA BR-0025 REG1A SNP Missense_Mutation 2 79349244 C T 22 58 BRCA BR-0025 TCF7L1 SNP Missense_Mutation 2 85531409 G A 39 72 BRCA BR-0025 ATOH8 SNP Missense_Mutation 2 85981437 C G 20 57 BRCA BR-0025 VPS16 SNP Silent 20 2846920 C T 27 20 BRCA BR-0025 ASXL1 SNP Missense_Mutation 20 31022529 T C 55 51 BRCA BR-0025 LPIN3 SNP Silent 20 39978465 G A 46 48 BRCA BR-0025 LPIN3 SNP Missense_Mutation 20 39986063 C T 18 55 BRCA BR-0025 R3HDML SNP Missense_Mutation 20 42972061 A C 3 53 BRCA BR-0025 PABPC1L SNP Missense_Mutation 20 43550268 G A 39 99 BRCA BR-0025 MOCS3 SNP Silent 20 49576126 C T 23 26 BRCA BR-0025 SALL4 SNP Missense_Mutation 20 50408091 C A 26 39 BRCA BR-0025 C20orf54 SNP Silent 20 741730 C G 21 56 BRCA BR-0025 HUNK SNP Silent 21 33346975 C T 17 70 BRCA BR-0025 SYNJ1 SNP Silent 21 34038409 T G 54 52 BRCA BR-0025 ETS2 SNP Missense_Mutation 21 40191600 A G 8 71 BRCA BR-0025 MICAL3 SNP Missense_Mutation 22 18293536 C G 23 98 BRCA BR-0025 PI4KA SNP Splice_Site 22 21064287 T C 55 91 BRCA BR-0025 GTPBP1 SNP Silent 22 39123307 C T 31 43 BRCA BR-0025 APOBEC3D SNP Missense_Mutation 22 39427910 C T 17 52 BRCA BR-0025 SAPS2 SNP Silent 22 50853062 C T 28 71 BRCA BR-0025 ATG4A SNP Missense_Mutation 23 107369333 A T 14 63 BRCA BR-0025 AGTR2 SNP Missense_Mutation 23 115304515 A G 9 61 BRCA BR-0025 ARHGAP4 SNP Silent 23 153186110 G T 43 48 BRCA BR-0025 HCFC1 SNP Silent 23 153222886 C T 23 28 BRCA BR-0025 FTSJ1 SNP Missense_Mutation 23 48340994 G A 39 57 BRCA BR-0025 PPP1R3F SNP Silent 23 49142310 G A 37 39 BRCA BR-0025 ZBTB20 SNP Missense_Mutation 3 114069130 C T 19 100 BRCA BR-0025 ZIC4 SNP Silent 3 147108987 G A 37 70 BRCA BR-0025 HTR3E SNP Missense_Mutation 3 183824023 C T 31 50 BRCA BR-0025 GRM2 SNP Missense_Mutation 3 51751677 T C 58 91 BRCA BR-0025 CGGBP1 SNP Missense_Mutation 3 88104744 G A 34 82 BRCA BR-0025 PPA2 SNP Missense_Mutation 4 106367601 C T 27 99 BRCA BR-0025 RGS12 SNP Silent 4 3432495 G A 38 43 BRCA BR-0025 USO1 SNP Silent 4 76711928 A G 6 48 BRCA BR-0025 DSPP SNP Silent 4 88534082 G C 41 49 BRCA BR-0025 SLC12A7 SNP Missense_Mutation 5 1079524 G A 40 92 BRCA BR-0025 TRPC7 SNP Silent 5 135692812 G A 40 50 BRCA BR-0025 ARAP3 SNP Missense_Mutation 5 141059802 G C 42 56 BRCA BR-0025 PCDH12 SNP Missense_Mutation 5 141335377 C A 24 49 BRCA BR-0025 SPEF2 SNP Missense_Mutation 5 35700834 G A 36 47 BRCA BR-0025 RANBP3L SNP Missense_Mutation 5 36260958 G T 47 52 BRCA BR-0025 HEATR7B2 SNP Missense_Mutation 5 41038849 G T 47 60 BRCA BR-0025 HEATR7B2 SNP Missense_Mutation 5 41064613 G T 34 56 BRCA BR-0025 AIM1 SNP Missense_Mutation 6 106968649 C A 22 78 BRCA BR-0025 REPS1 SNP Missense_Mutation 6 139266703 C G 22 71 BRCA BR-0025 HIVEP2 SNP Silent 6 143094232 A T 3 46 BRCA BR-0025 HIVEP2 SNP Missense_Mutation 6 143095551 C T 18 63 BRCA BR-0025 TIAM2 SNP Missense_Mutation 6 155578212 G A 36 58 BRCA BR-0025 UNC93A SNP Missense_Mutation 6 167708039 C T 17 82 BRCA BR-0025 LST1 SNP Splice_Site 6 31555719 A C 7 67 BRCA BR-0025 VPS52 SNP Missense_Mutation 6 33236314 C T 27 73 BRCA BR-0025 ITPR3 SNP Missense_Mutation 6 33636385 G C 33 67 BRCA BR-0025 PNPLA1 SNP Missense_Mutation 6 36269947 C A 20 45 BRCA BR-0025 C6orf89 SNP Missense_Mutation 6 36882198 C G 21 65 BRCA BR-0025 FRS3 SNP Silent 6 41738654 G A 38 47 BRCA BR-0025 RPL7L1 SNP Missense_Mutation 6 42851330 G A 42 86 BRCA BR-0025 ZNF451 SNP Missense_Mutation 6 57006862 C T 27 59 BRCA BR-0025 IRAK1BP1 SNP Silent 6 79577491 C T 18 58 BRCA BR-0025 PDIA4 SNP Missense_Mutation 7 148703009 A G 9 91 BRCA BR-0025 INMT SNP Missense_Mutation 7 30795444 G A 42 68 BRCA BR-0025 UPP1 SNP Silent 7 48147040 C A 27 49 BRCA BR-0025 EGFR SNP Missense_Mutation 7 55220340 C G 23 54 BRCA BR-0025 ZDHHC4 SNP Missense_Mutation 7 6624671 G A 40 96 BRCA BR-0025 RSBN1L SNP Missense_Mutation 7 77378947 G A 40 54 BRCA BR-0025 GRHL2 SNP Nonsense_Mutation 8 102505011 C A 31 96 BRCA BR-0025 UBR5 SNP Splice_site 8 103372416 G C 45 97 BRCA BR-0025 COL14A1 SNP Splice_site 8 121379411 T C 58 49 BRCA BR-0025 TG SNP Missense_Mutation 8 133894119 C T 25 80 BRCA BR-0025 EIF2C2 SNP Missense_Mutation 8 141566081 G A 39 87 BRCA BR-0025 DENND3 SNP Silent 8 142188231 G A 46 55 BRCA BR-0025 CYP11B1 SNP Nonsense_Mutation 8 143961083 C T 26 80 BRCA BR-0025 OPLAH SNP Missense_Mutation 8 145113739 T C 56 73 BRCA BR-0025 ENTPD4 SNP Silent 8 23290466 G A 39 25 BRCA BR-0025 CSMD1 SNP Missense_Mutation 8 3000038 A T 3 92 BRCA BR-0025 RC3H2 SNP Missense_Mutation 9 125639858 T C 55 68 BRCA BR-0025 PKN3 SNP Missense_Mutation 9 131482766 G A 37 91 BRCA BR-0025 C9orf7 SNP Missense_Mutation 9 136333705 C A 26 76 BRCA BR-0025 SDCCAG3 SNP Nonsense_Mutation 9 139298625 G A 38 56 BRCA BR-0025 NOTCH1 SNP Missense_Mutation 9 139397768 A G 7 89 BRCA BR-0025 ADAMTSL1 SNP Missense_Mutation 9 18817166 A G 6 61 BRCA BR-0025 SIGMAR1 SNP Missense_Mutation 9 34635772 C T 19 76 BRCA BR-0026 RCOR3 SNP Silent 1 211449625 A G 2 49 BRCA BR-0026 PRDM16 SNP Missense_Mutation 1 3301765 C T 27 53 BRCA BR-0026 YARS SNP Silent 1 33241684 G A 45 50 BRCA BR-0026 IDE SNP Missense_Mutation 10 94225531 G A 48 100 BRCA BR-0026 ST3GAL4 SNP Silent 11 126278265 C T 32 56 BRCA BR-0026 ING1 SNP Silent 13 111366526 C T 30 55 BRCA BR-0026 ESRP2 SNP Silent 16 68267252 G A 41 54 BRCA BR-0026 DNAH2 SNP Silent 17 7638023 C A 30 56 BRCA BR-0026 COL4A6 SNP Splice_site 23 107446159 G T 39 56 BRCA BR-0026 PHKA1 SNP Missense_Mutation 23 71831000 G A 40 53 BRCA BR-0026 NAF1 SNP Silent 4 164050118 A G 11 43 BRCA BR-0026 HIST1H4C SNP Missense_Mutation 6 26104216 G T 44 96 BRCA BR-0026 ANKS1A SNP Silent 6 34985512 G A 33 56 BRCA BR-0026 FAM167A SNP Missense_Mutation 8 11301899 C T 19 59 BRCA BR-0027 CCDC76 SNP Missense_Mutation 1 100605759 G A 45 61 BRCA BR-0027 KIF1B SNP Missense_Mutation 1 10364385 C A 19 98 BRCA BR-0027 C1orf127 SNP Missense_Mutation 1 11015103 C G 29 66 BRCA BR-0027 PLOD1 SNP Silent 1 12018692 C T 29 66 BRCA BR-0027 POGZ SNP Missense_Mutation 1 151377799 C G 32 71 BRCA BR-0027 CFH SNP Missense_Mutation 1 196659351 C G 30 62 BRCA BR-0027 RPS6KC1 SNP Missense_Mutation 1 213303229 C G 29 77 BRCA BR-0027 MIA3 SNP Missense_Mutation 1 222803008 C G 32 56 BRCA BR-0027 TP53BP2 SNP Missense_Mutation 1 223976833 A G 6 93 BRCA BR-0027 CNNM2 SNP Missense_Mutation 10 104836739 G C 34 80 BRCA BR-0027 PNLIP SNP Missense_Mutation 10 118318768 G C 33 59 BRCA BR-0027 CDC123 SNP Silent 10 12257804 C G 32 50 BRCA BR-0027 CDC123 SNP Silent 10 12288207 C T 29 48 BRCA BR-0027 KIAA1279 SNP Missense_Mutation 10 70748757 G A 37 99 BRCA BR-0027 MMP13 SNP Missense_Mutation 11 102816417 G C 43 65 BRCA BR-0027 EXPH5 SNP Nonsense_Mutation 11 108385107 G C 45 66 BRCA BR-0027 OR8K1 SNP Silent 11 56113661 G T 47 49 BRCA BR-0027 SART1 SNP Missense_Mutation 11 65733606 G A 42 78 BRCA BR-0027 PAAF1 SNP Missense_Mutation 11 73620606 C G 30 81 BRCA BR-0027 WEE1 SNP Silent 11 9603179 G A 45 53 BRCA BR-0027 MYBPC1 SNP Missense_Mutation 12 102040551 G C 45 99 BRCA BR-0027 VSIG10 SNP Silent 12 118517389 C T 20 63 BRCA BR-0027 COQ5 SNP Missense_Mutation 12 120960161 G C 45 74 BRCA BR-0027 GPR133 SNP Missense_Mutation 12 131451058 G A 41 91 BRCA BR-0027 ULK1 SNP Silent 12 132405746 C T 32 47 BRCA BR-0027 FGFR1OP2 SNP Missense_Mutation 12 27117660 G T 33 58 BRCA BR-0027 OR8S1 SNP Missense_Mutation 12 48919694 G A 36 50 BRCA BR-0027 MLL2 SNP Missense_Mutation 12 49420010 C T 31 98 BRCA BR-0027 KCNA5 SNP Silent 12 5154510 C G 30 52 BRCA BR-0027 NECAP1 SNP Missense_Mutation 12 8245365 C G 29 63 BRCA BR-0027 DUSP6 SNP Silent 12 89745526 G C 33 42 BRCA BR-0027 EXOC5 SNP Missense_Mutation 14 57689053 C T 29 94 BRCA BR-0027 RAD51 SNP Missense_Mutation 15 40998378 G A 45 97 BRCA BR-0027 GALK2 SNP Missense_Mutation 15 49584638 C A 29 100 BRCA BR-0027 PAQR5 SNP Missense_Mutation 15 69696138 G C 33 60 BRCA BR-0027 KLHL25 SNP Silent 15 86311656 G A 41 51 BRCA BR-0027 ABHD2 SNP Splice_Site 15 89694906 A C 15 94 BRCA BR-0027 IQGAP1 SNP Silent 15 91021053 C T 29 78 BRCA BR-0027 PARN SNP Silent 16 14723479 G A 33 66 BRCA BR-0027 COG7 SNP Missense_Mutation 16 23457274 G A 45 80 BRCA BR-0027 XPO6 SNP Silent 16 28113195 G A 45 45 BRCA BR-0027 DYNC1LI2 SNP Missense_Mutation 16 66761629 G C 47 95 BRCA BR-0027 FTSJD1 SNP Silent 16 71319623 C T 32 71 BRCA BR-0027 JPH3 SNP Splice_site 16 87730265 G C 45 56 BRCA BR-0027 CDK5R1 SNP Silent 17 30815160 C T 23 51 BRCA BR-0027 TUBD1 SNP Missense_Mutation 17 57968322 C G 32 50 BRCA BR-0027 RGS9 SNP Missense_Mutation 17 63156973 C G 32 52 BRCA BR-0027 BPTF SNP Splice_site 17 65936770 C T 21 97 BRCA BR-0027 DULLARD SNP Silent 17 7150392 G A 45 55 BRCA BR-0027 TP53 SNP Splice_Site 17 7578555 C G 20 82 BRCA BR-0027 ZCCHC2 SNP Nonsense_Mutation 18 60230342 C T 29 75 BRCA BR-0027 CCDC102B SNP Nonsense_Mutation 18 66721318 G T 33 58 BRCA BR-0027 ZNF555 SNP Missense_Mutation 19 2853265 G A 46 87 BRCA BR-0027 EHD2 SNP Silent 19 48229400 C T 32 48 BRCA BR-0027 FPR2 SNP Silent 19 52272640 C T 29 54 BRCA BR-0027 UBE2S SNP Silent 19 55915760 G A 35 74 BRCA BR-0027 MZF1 SNP Missense_Mutation 19 59080671 C G 29 54 BRCA BR-0027 SULT1C2 SNP Missense_Mutation 2 108924854 G C 33 52 BRCA BR-0027 SNTG2 SNP Missense_Mutation 2 1243519 G A 42 67 BRCA BR-0027 C2orf77 SNP Missense_Mutation 2 170502570 T G 60 49 BRCA BR-0027 NEUROD1 SNP Missense_Mutation 2 182543545 G T 45 64 BRCA BR-0027 ALS2 SNP Missense_Mutation 2 202622242 C G 32 93 BRCA BR-0027 INHA SNP Silent 2 220439480 C T 29 54 BRCA BR-0027 COL4A3 SNP Missense_Mutation 2 228148568 G C 33 49 BRCA BR-0027 KIDINS220 SNP Missense_Mutation 2 8910894 C G 29 97 BRCA BR-0027 ACTR1B SNP Missense_Mutation 2 98275820 C G 30 82 BRCA BR-0027 AVP SNP Nonsense_Mutation 20 3065212 C A 30 84 BRCA BR-0027 BCAS4 SNP Nonsense_Mutation 20 49458387 C T 29 62 BRCA BR-0027 C21orf59 SNP Splice_site 21 33974284 C G 32 96 BRCA BR-0027 ACR SNP Missense_Mutation 22 51177706 T C 55 73 BRCA BR-0027 TBC1D8B SNP Missense_Mutation 23 106064116 G C 33 57 BRCA BR-0027 GPR112 SNP Missense_Mutation 23 135427273 G A 45 59 BRCA BR-0027 MAGEA11 SNP Missense_Mutation 23 148798293 G A 45 49 BRCA BR-0027 NHS SNP Missense_Mutation 23 17744246 C G 29 55 BRCA BR-0027 MAGEB6 SNP Missense_Mutation 23 26212408 C G 29 49 BRCA BR-0027 USP51 SNP Missense_Mutation 23 55514315 C T 32 77 BRCA BR-0027 RAB41 SNP Missense_Mutation 23 69502089 G A 37 28 BRCA BR-0027 BRWD3 SNP Missense_Mutation 23 79962986 C T 26 68 BRCA BR-0027 TNMD SNP Missense_Mutation 23 99852567 G A 45 65 BRCA BR-0027 NFKBIZ SNP Nonsense_Mutation 3 101578192 C T 29 76 BRCA BR-0027 COL6A6 SNP Missense_Mutation 3 130300525 C A 30 85 BRCA BR-0027 ATR SNP Missense_Mutation 3 142231240 C G 29 78 BRCA BR-0027 PIK3CA SNP Missense_Mutation 3 178936095 A G 7 90 BRCA BR-0027 EPHB3 SNP Missense_Mutation 3 184294818 C T 31 99 BRCA BR-0027 TET2 SNP Missense_Mutation 4 106155886 G A 45 63 BRCA BR-0027 DCLK2 SNP Silent 4 151153530 G A 45 60 BRCA BR-0027 JAKMIP1 SNP Silent 4 6107215 G A 38 49 BRCA BR-0027 ALB SNP Missense_Mutation 4 74280843 T C 59 78 BRCA BR-0027 WDFY3 SNP Silent 4 85654670 G A 37 34 BRCA BR-0027 HSD17B4 SNP Silent 5 118814670 T C 63 50 BRCA BR-0027 FBN2 SNP Missense_Mutation 5 127647021 T C 57 71 BRCA BR-0027 SLC22A4 SNP Missense_Mutation 5 131670587 G C 41 68 BRCA BR-0027 NDST1 SNP Missense_Mutation 5 149929247 T C 58 91 BRCA BR-0027 C5orf4 SNP Nonsense_Mutation 5 154200008 C T 21 58 BRCA BR-0027 C5orf34 SNP Missense_Mutation 5 43492852 C G 30 82 BRCA BR-0027 GZMA SNP Missense_Mutation 5 54404095 G A 33 59 BRCA BR-0027 DHX29 SNP Missense_Mutation 5 54593135 C G 32 96 BRCA BR-0027 PIK3R1 SNP Missense_Mutation 5 67592109 G A 37 85 BRCA BR-0027 DSE SNP Missense_Mutation 6 116758256 G C 45 50 BRCA BR-0027 HIST1H3H SNP Missense_Mutation 6 27777855 G T 42 94 BRCA BR-0027 MAPK13 SNP Missense_Mutation 6 36106757 G A 45 99 BRCA BR-0027 MUT SNP Missense_Mutation 6 49426918 C T 20 64 BRCA BR-0027 PGK2 SNP Missense_Mutation 6 49754019 C G 32 62 BRCA BR-0027 THSD7A SNP Missense_Mutation 7 11501657 G C 45 71 BRCA BR-0027 PTPRZ1 SNP Missense_Mutation 7 121652099 C G 32 55 BRCA BR-0027 LUC7L2 SNP Missense_Mutation 7 139030269 G C 33 94 BRCA BR-0027 CARD11 SNP Silent 7 2983888 C T 32 68 BRCA BR-0027 BBS9 SNP Missense_Mutation 7 33545228 C G 32 66 BRCA BR-0027 SDK1 SNP Missense_Mutation 7 3681634 C G 29 58 BRCA BR-0027 EIF4H SNP Missense_Mutation 7 73609175 G A 47 75 BRCA BR-0027 ZNF804B SNP Missense_Mutation 7 88963467 G A 41 55 BRCA BR-0027 PPP1R9A SNP Missense_Mutation 7 94919472 C G 32 48 BRCA BR-0027 CTHRC1 SNP Silent 8 104390305 C T 29 63 BRCA BR-0027 CSMD3 SNP Missense_Mutation 8 113988102 C T 32 88 BRCA BR-0027 CDCA2 SNP Missense_Mutation 8 25325825 G C 45 50 BRCA BR-0027 HOOK3 SNP Missense_Mutation 8 42819521 A G 4 77 BRCA BR-0027 GDF6 SNP Missense_Mutation 8 97157708 C G 29 76 BRCA BR-0027 TLE1 SNP Missense_Mutation 9 84199175 C T 29 100 BRCA BR-0027 NAA35 SNP Missense_Mutation 9 88628672 G C 45 68 BRCA BR-0028 CD53 SNP Missense_Mutation 1 111434994 G T 47 84 BRCA BR-0028 FLG SNP Missense_Mutation 1 152275610 C T 17 47 BRCA BR-0028 RAB13 SNP Missense_Mutation 1 153955263 G A 38 70 BRCA BR-0028 SRGAP2 SNP Missense_Mutation 1 206566221 G A 39 100 BRCA BR-0028 C10orf84 SNP Missense_Mutation 10 120095705 C T 32 48 BRCA BR-0028 SYCE1 SNP Splice_site 10 135372381 G A 38 20 BRCA BR-0028 EXPH5 SNP Missense_Mutation 11 108384337 G T 47 59 BRCA BR-0028 GRIN2B SNP Silent 12 13717541 G A 37 42 BRCA BR-0028 SPERT SNP Missense_Mutation 13 46288466 C T 26 79 BRCA BR-0028 SYT16 SNP Missense_Mutation 14 62567163 G A 40 72 BRCA BR-0028 XYLT1 SNP Silent 16 17232350 G A 38 38 BRCA BR-0028 ITGAX SNP Missense_Mutation 16 31382720 C T 27 61 BRCA BR-0028 BPTF SNP Silent 17 65924542 C T 25 48 BRCA BR-0028 CYP4F12 SNP Missense_Mutation 19 15794478 C T 27 57 BRCA BR-0028 UNC13A SNP Silent 19 17752276 G A 40 47 BRCA BR-0028 KLK15 SNP Missense_Mutation 19 51331015 G C 42 80 BRCA BR-0028 ZNF530 SNP Silent 19 58115749 G A 33 57 BRCA BR-0028 CDH22 SNP Silent 20 44856259 C T 23 43 BRCA BR-0028 FRMPD4 SNP Missense_Mutation 23 12725703 A G 2 88 BRCA BR-0028 MECP2 SNP Missense_Mutation 23 153295843 G A 40 93 BRCA BR-0028 WNK3 SNP Missense_Mutation 23 54275768 A G 14 64 BRCA BR-0028 HRH1 SNP Missense_Mutation 3 11301661 C T 27 49 BRCA BR-0028 STAB1 SNP Splice_Site 3 52554307 G A 40 63 BRCA BR-0028 LRIG1 SNP Missense_Mutation 3 66436474 G A 39 79 BRCA BR-0028 CDH18 SNP Missense_Mutation 5 19473754 G A 40 56 BRCA BR-0028 DSE SNP Missense_Mutation 6 116720539 C G 26 57 BRCA BR-0028 ATF6B SNP Silent 6 32093955 G A 44 49 BRCA BR-0028 KLRG2 SNP Missense_Mutation 7 139164441 C A 26 47 BRCA BR-0028 GPNMB SNP Missense_Mutation 7 23309717 C T 19 52 BRCA BR-0028 TRPS1 SNP Silent 8 116426713 C T 29 72 BRCA BR-0028 CSMD1 SNP Missense_Mutation 8 4851928 C A 21 60 BRCA BR-0028 TCEA1 SNP Missense_Mutation 8 54934626 G T 40 57 BRCA BR-0028 NANS SNP Missense_Mutation 9 100823117 T G 61 50 BRCA BR-0030 TMEM79 SNP Silent 1 156256077 T C 60 43 BRCA BR-0030 LPPR5 SNP Missense_Mutation 1 99387499 C T 31 95 BRCA BR-0030 CTNNA3 SNP Missense_Mutation 10 68040300 A C 12 57 BRCA BR-0030 MRGPRX2 SNP Missense_Mutation 11 19077532 G A 39 56 BRCA BR-0030 CLIP1 SNP Splice_site 12 122812808 C T 21 85 BRCA BR-0030 TMEM132D SNP Silent 12 129566484 C T 27 25 BRCA BR-0030 PIK3C2G SNP Missense_Mutation 12 18552692 G T 43 82 BRCA BR-0030 SLC15A1 SNP Splice_Site 13 99373840 C T 24 100 BRCA BR-0030 NID2 SNP Silent 14 52485918 G A 38 39 BRCA BR-0030 MAP2K4 SNP Nonsense_Mutation 17 11984702 C A 29 98 BRCA BR-0030 C17orf28 SNP Missense_Mutation 17 72954477 C T 27 69 BRCA BR-0030 KLK8 SNP Missense_Mutation 19 51503500 C T 27 61 BRCA BR-0030 FBN3 SNP Missense_Mutation 19 8131005 C T 27 52 BRCA BR-0030 NDUFA10 SNP Silent 2 240958052 T C 56 50 BRCA BR-0030 CHM SNP Splice_Site 23 85134069 C G 32 78 BRCA BR-0030 HYAL1 SNP Missense_Mutation 3 50339816 C T 23 44 BRCA BR-0030 ARID1B SNP Silent 6 157528257 C G 24 50 BRCA BR-0030 FNDC1 SNP Missense_Mutation 6 159653660 G A 38 40 BRCA BR-0030 GTPBP10 SNP Splice_site 7 89976056 A G 8 76 BRCA BR-0030 NSMAF SNP Missense_Mutation 8 59500186 A T 8 47 BRCA BR-0030 HEMGN SNP Missense_Mutation 9 100692418 T C 64 53 BRCA BR-0031 ABCC8 SNP Silent 11 17464764 G A 37 44 BRCA BR-0031 RAG1 SNP Missense_Mutation 11 36597921 G A 42 59 BRCA BR-0031 NARS2 SNP Missense_Mutation 11 78204212 G C 39 93 BRCA BR-0031 AEBP2 SNP Missense_Mutation 12 19615472 A G 7 90 BRCA BR-0031 C14orf73 SNP Missense_Mutation 14 103568521 G A 38 54 BRCA BR-0031 CASC4 SNP Silent 15 44620944 G A 41 65 BRCA BR-0031 PDCD7 SNP Nonsense_Mutation 15 65412100 A C 13 69 BRCA BR-0031 CTCF DNP Missense_Mutation 16 67662337 GC CT 46 100 BRCA BR-0031 DGKE SNP Missense_Mutation 17 54912417 C G 27 63 BRCA BR-0031 OR10H5 SNP Missense_Mutation 19 15905637 A G 14 69 BRCA BR-0031 HAPLN4 SNP Missense_Mutation 19 19371865 C T 23 59 BRCA BR-0031 CEP250 SNP Silent 20 34092014 C T 18 47 BRCA BR-0031 MECP2 SNP Silent 23 153297825 G A 39 29 BRCA BR-0031 KIAA2022 SNP Missense_Mutation 23 73963349 C T 31 81 BRCA BR-0031 BOC SNP Silent 3 112998118 C T 21 60 BRCA BR-0031 IL12A SNP Missense_Mutation 3 159713312 T A 52 72 BRCA BR-0031 CTNNB1 SNP Nonsense_Mutation 3 41275708 C T 19 61 BRCA BR-0031 ETV1 SNP Missense_Mutation 7 13975351 C T 28 69 BRCA BR-0031 SPAG1 SNP Missense_Mutation 8 101252653 C T 24 66 BRCA BR-0031 UNC5D SNP Missense_Mutation 8 35624532 G A 39 79 BRCA BR-0031 NPBWR1 SNP Silent 8 53852596 C T 32 63 BRCA BR-0032 KCNA10 SNP Missense_Mutation 1 111060343 C T 27 99 BRCA BR-0032 HCN3 SNP Missense_Mutation 1 155247518 G A 35 66 BRCA BR-0032 HNRNPU SNP Silent 1 245027574 C T 24 75 BRCA BR-0032 KIF26B SNP Missense_Mutation 1 245861491 C T 23 73 BRCA BR-0032 KIF5B SNP Missense_Mutation 10 32320035 T C 49 79 BRCA BR-0032 CTR9 SNP Splice_Site 11 10783602 G A 44 98 BRCA BR-0032 FADD SNP Silent 11 70052243 G T 48 51 BRCA BR-0032 LATS2 SNP Missense_Mutation 13 21555688 G A 38 88 BRCA BR-0032 RPL4 SNP Silent 15 66795420 G A 34 48 BRCA BR-0032 TAT SNP Missense_Mutation 16 71606206 C A 29 100 BRCA BR-0032 C19orf46 SNP Missense_Mutation 19 36494149 C T 21 51 BRCA BR-0032 ZNF404 SNP Missense_Mutation 19 44377902 C G 18 75 BRCA BR-0032 GPR4 SNP Silent 19 46094912 C T 27 49 BRCA BR-0032 BUB1 SNP Missense_Mutation 2 111398745 C T 21 86 BRCA BR-0032 PECR SNP Missense_Mutation 2 216904050 A G 3 56 BRCA BR-0032 DOCK10 SNP Missense_Mutation 2 225666662 A G 11 87 BRCA BR-0032 LRRC3 SNP Silent 21 45876758 C A 22 51 BRCA BR-0032 ZNF185 SNP Silent 23 152113916 C T 23 40 BRCA BR-0032 CTPS2 SNP Missense_Mutation 23 16627796 A T 1 90 BRCA BR-0032 NHS SNP Missense_Mutation 23 17750475 G C 36 97 BRCA BR-0032 OSBPL11 SNP Missense_Mutation 3 125250776 G A 40 75 BRCA BR-0032 CMYA5 SNP Missense_Mutation 5 79027572 C T 27 49 BRCA BR-0032 ACTB SNP Missense_Mutation 7 5567676 T C 62 90 BRCA BR-0032 ELP3 SNP Missense_Mutation 8 27989847 G A 39 96 BRCA BR-0032 ZNF462 SNP Silent 9 109690060 C T 23 49 BRCA BR-0032 DFNB31 SNP Silent 9 117266500 T C 52 53 BRCA BR-0033 KLHDC7A SNP Missense_Mutation 1 18808965 C T 28 76 BRCA BR-0033 CFHR1 SNP Silent 1 196800974 T C 52 43 BRCA BR-0033 USH2A SNP Missense_Mutation 1 216061845 C T 32 66 BRCA BR-0033 WLS SNP Splice_Site 1 68659906 T C 55 35 BRCA BR-0033 PLCE1 SNP Missense_Mutation 10 95931110 C T 24 97 BRCA BR-0033 MUC5B SNP Silent 11 1270668 G A 36 39 BRCA BR-0033 METT5D1 SNP Missense_Mutation 11 28135038 C G 29 54 BRCA BR-0033 SDHAF2 SNP Missense_Mutation 11 61205569 T G 64 58 BRCA BR-0033 FOLR3 SNP Missense_Mutation 11 71850184 G C 41 90 BRCA BR-0033 SYTL2 SNP Silent 11 85431928 G A 33 65 BRCA BR-0033 MED13L SNP Missense_Mutation 12 116443747 T A 55 75 BRCA BR-0033 FMNL3 SNP Silent 12 50042081 C T 29 63 BRCA BR-0033 TSPAN31 SNP Missense_Mutation 12 58141048 G A 33 79 BRCA BR-0033 VTN SNP Silent 17 26696415 C T 29 50 BRCA BR-0033 TP53 SNP Missense_Mutation 17 7578190 T C 49 88 BRCA BR-0033 DHRS7C SNP Missense_Mutation 17 9684833 T C 49 60 BRCA BR-0033 ATP5A1 SNP Silent 18 43666386 G C 37 47 BRCA BR-0033 SERPINB13 SNP Silent 18 61264303 C T 19 36 BRCA BR-0033 BRD4 SNP Nonsense_Mutation 19 15376359 G A 46 87 BRCA BR-0033 NFIC SNP Missense_Mutation 19 3381872 A G 9 84 BRCA BR-0033 TRIP12 SNP Missense_Mutation 2 230723950 G T 45 98 BRCA BR-0033 MAVS SNP Missense_Mutation 20 3842994 C T 24 50 BRCA BR-0033 PIK3R4 SNP Missense_Mutation 3 130449185 C G 29 94 BRCA BR-0033 P4HTM SNP Silent 3 49044229 G C 42 52 BRCA BR-0033 KLKB1 SNP Missense_Mutation 4 187179184 G C 35 89 BRCA BR-0033 SPP1 SNP Missense_Mutation 4 88901231 T C 51 73 BRCA BR-0033 ZKSCAN3 SNP Silent 6 28327663 G T 41 52 BRCA BR-0033 HLA-G SNP Missense_Mutation 6 29795930 C G 31 60 BRCA BR-0033 GHRHR SNP Silent 7 31015412 C G 29 51 BRCA BR-0033 HECW1 SNP Missense_Mutation 7 43594307 G C 37 100 BRCA BR-0033 GLT6D1 SNP Missense_Mutation 9 138518009 C A 17 46 BRCA BR-0033 GNE SNP Missense_Mutation 9 36249285 G C 33 91 BRCA BR-0034 CELSR2 SNP Missense_Mutation 1 109815938 C T 32 53 BRCA BR-0034 CD1E SNP Missense_Mutation 1 158325172 T A 52 49 BRCA BR-0034 NCF2 SNP Missense_Mutation 1 183532403 G A 45 63 BRCA BR-0034 Unknown SNP Missense_Mutation 1 1854461 A C 6 77 BRCA BR-0034 COL24A1 SNP Missense_Mutation 1 86591642 C T 32 66 BRCA BR-0034 KIAA1217 SNP Silent 10 24835148 T G 59 56 BRCA BR-0034 C10orf71 SNP Silent 10 50530758 C G 22 51 BRCA BR-0034 ETS1 SNP Silent 11 128350135 G C 45 82 BRCA BR-0034 LTBP3 SNP Silent 11 65308030 C T 29 53 BRCA BR-0034 ODZ4 SNP Silent 11 78482134 C G 29 54 BRCA BR-0034 RFX4 SNP Silent 12 107103171 C T 19 50 BRCA BR-0034 C12orf12 SNP Missense_Mutation 12 91347745 G C 33 59 BRCA BR-0034 PTPN21 SNP Missense_Mutation 14 88946379 C T 30 75 BRCA BR-0034 SEMA6D SNP Missense_Mutation 15 48056101 C T 27 86 BRCA BR-0034 MAN2A2 SNP Splice_site 15 91454468 G T 35 90 BRCA BR-0034 ITGAL SNP Missense_Mutation 16 30510662 G T 38 36 BRCA BR-0034 RPGRIP1L SNP Silent 16 53692338 G C 41 59 BRCA BR-0034 SFRS14 SNP Silent 19 19106051 G A 39 43 BRCA BR-0034 ZNF324 SNP Missense_Mutation 19 58982721 G A 38 45 BRCA BR-0034 TTN SNP Nonsense_Mutation 2 179428438 G C 45 79 BRCA BR-0034 KCNE4 SNP Missense_Mutation 2 223917909 G A 41 84 BRCA BR-0034 SNTA1 SNP Missense_Mutation 20 32000208 T G 59 56 BRCA BR-0034 GPR112 SNP Silent 23 135455109 G A 42 39 BRCA BR-0034 MAGEA4 SNP Silent 23 151092466 C G 29 38 BRCA BR-0034 TMLHE SNP Missense_Mutation 23 154754266 C T 27 63 BRCA BR-0034 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA BR-0034 FBXW12 SNP Missense_Mutation 3 48423247 G C 41 56 BRCA BR-0034 RGS12 SNP Missense_Mutation 4 3432152 C G 30 82 BRCA BR-0034 GUF1 SNP Missense_Mutation 4 44691407 G A 46 96 BRCA BR-0034 C4orf22 SNP Missense_Mutation 4 81791204 G A 37 85 BRCA BR-0034 HSD17B4 SNP Silent 5 118835140 A G 9 52 BRCA BR-0034 MATR3 SNP Silent 5 138655079 G C 45 86 BRCA BR-0034 ELL2 SNP Missense_Mutation 5 95242433 C T 29 98 BRCA BR-0034 FYN SNP Missense_Mutation 6 112029201 G C 39 88 BRCA BR-0034 C6orf174 SNP Missense_Mutation 6 127837511 G T 48 61 BRCA BR-0034 MAP7 SNP Silent 6 136693747 G A 45 71 BRCA BR-0034 KIAA1244 SNP Silent 6 138531148 C T 29 61 BRCA BR-0034 HIST1H3B SNP Missense_Mutation 6 26031939 C T 31 98 BRCA BR-0034 PPP1R10 SNP Missense_Mutation 6 30571000 G C 45 59 BRCA BR-0034 DPY19L1 SNP Missense_Mutation 7 34997615 G C 33 71 BRCA BR-0034 WHSC1L1 SNP Missense_Mutation 8 38133173 C T 32 87 BRCA BR-0036 MASP2 SNP Missense_Mutation 1 11097835 T G 52 80 BRCA BR-0036 ADAM30 SNP Missense_Mutation 1 120437892 C A 22 62 BRCA BR-0036 OR10K2 SNP Silent 1 158390015 G A 33 52 BRCA BR-0036 DDI2 SNP Missense_Mutation 1 15978310 C T 28 96 BRCA BR-0036 BAT2L2 SNP Silent 1 171501490 T G 54 58 BRCA BR-0036 PLEKHA6 SNP Missense_Mutation 1 204228798 G A 43 52 BRCA BR-0036 PHC2 SNP Silent 1 33837971 C T 28 73 BRCA BR-0036 PTPRF SNP Missense_Mutation 1 44083455 G A 38 100 BRCA BR-0036 FAM107B SNP Silent 10 14816300 C G 21 51 BRCA BR-0036 ARHGAP21 SNP Missense_Mutation 10 24896525 C A 17 51 BRCA BR-0036 IGSF9B SNP Missense_Mutation 11 133790982 C T 27 84 BRCA BR-0036 Unknown SNP Nonsense_Mutation 12 31280637 G C 45 47 BRCA BR-0036 PCDH17 SNP Missense_Mutation 13 58299284 T G 59 41 BRCA BR-0036 CYP46A1 SNP Missense_Mutation 14 100173922 G C 33 63 BRCA BR-0036 SGK269 SNP Silent 15 77425473 G C 41 55 BRCA BR-0036 KIAA1609 SNP Missense_Mutation 16 84520329 C T 23 50 BRCA BR-0036 BRCA1 SNP Nonsense_Mutation 17 41246468 G T 34 68 BRCA BR-0036 BRIP1 SNP Missense_Mutation 17 59793363 C T 19 80 BRCA BR-0036 TP53 SNP Missense_Mutation 17 7578394 T C 51 89 BRCA BR-0036 FAM59A SNP Missense_Mutation 18 29867975 C T 25 100 BRCA BR-0036 BRD4 SNP Missense_Mutation 19 15367927 C T 26 55 BRCA BR-0036 CD37 SNP Missense_Mutation 19 49842175 G C 33 44 BRCA BR-0036 NLRP13 SNP Missense_Mutation 19 56424569 C T 19 50 BRCA BR-0036 MYO7B SNP Splice_site 2 128385947 G T 43 70 BRCA BR-0036 ZAK SNP Silent 2 174131406 C G 22 42 BRCA BR-0036 TTN SNP Missense_Mutation 2 179468706 C A 25 61 BRCA BR-0036 ALS2 SNP Missense_Mutation 2 202626039 C A 28 55 BRCA BR-0036 ARMC9 SNP Missense_Mutation 2 232160938 C A 32 79 BRCA BR-0036 LOXL3 SNP Splice_Site 2 74777476 C G 24 94 BRCA BR-0036 VAMP5 SNP Silent 2 85820142 C T 32 53 BRCA BR-0036 TGM3 SNP Splice_site 20 2321080 C T 27 27 BRCA BR-0036 TPX2 SNP Nonsense_Mutation 20 30365329 C A 29 68 BRCA BR-0036 CHD6 SNP Missense_Mutation 20 40065930 C A 26 79 BRCA BR-0036 SBF1 SNP Missense_Mutation 22 50899066 G A 38 81 BRCA BR-0036 ARMCX1 SNP Missense_Mutation 23 100808292 G A 42 43 BRCA BR-0036 ACTRT1 SNP Missense_Mutation 23 127185886 T A 60 47 BRCA BR-0036 F8 SNP Missense_Mutation 23 154124452 T C 55 70 BRCA BR-0036 GSPT2 SNP Missense_Mutation 23 51488469 A T 8 82 BRCA BR-0036 DZIP3 SNP Nonsense_Mutation 3 108394703 A T 5 69 BRCA BR-0036 ZFYVE20 SNP Nonsense_Mutation 3 15126270 A T 14 53 BRCA BR-0036 PRICKLE2 SNP Missense_Mutation 3 64084954 C T 27 50 BRCA BR-0036 GRM7 SNP Missense_Mutation 3 7621027 G A 38 76 BRCA BR-0036 ALB SNP Splice_site 4 74272476 C A 20 50 BRCA BR-0036 SLC6A19 SNP Missense_Mutation 5 1217044 A G 2 87 BRCA BR-0036 MARCH3 SNP Missense_Mutation 5 126253851 G T 39 72 BRCA BR-0036 TAAR5 SNP Missense_Mutation 6 132909837 C T 27 53 BRCA BR-0036 TAAR2 SNP Missense_Mutation 6 132938516 G A 41 100 BRCA BR-0036 ZBTB22 SNP Missense_Mutation 6 33284347 C T 27 74 BRCA BR-0036 DST SNP Splice_site 6 56392291 C G 24 53 BRCA BR-0036 AOAH SNP Splice_site 7 36660433 G A 39 79 BRCA BR-0036 DBNL SNP Missense_Mutation 7 44089864 G C 40 62 BRCA BR-0036 LIMK1 SNP Missense_Mutation 7 73530228 C T 23 62 BRCA BR-0036 PLEC SNP Silent 8 144991401 G A 44 86 BRCA BR-0036 KCNS2 SNP Missense_Mutation 8 99440589 G A 36 67 BRCA BR-0036 ABL1 SNP Missense_Mutation 9 133729573 G A 46 100 BRCA BR-0037 RAB13 SNP Missense_Mutation 1 153956033 G C 45 70 BRCA BR-0037 DCST1 SNP Missense_Mutation 1 155011962 G T 35 80 BRCA BR-0037 PRRX1 SNP Silent 1 170695537 G A 40 52 BRCA BR-0037 ELK4 SNP Missense_Mutation 1 205589192 C T 26 52 BRCA BR-0037 LYPLAL1 SNP Missense_Mutation 1 219352513 T C 51 15 BRCA BR-0037 AHCTF1 SNP Missense_Mutation 1 247058007 C A 30 97 BRCA BR-0037 OR2T6 SNP Missense_Mutation 1 248551585 C A 25 55 BRCA BR-0037 TP73 SNP Nonsense_Mutation 1 3643778 G T 41 92 BRCA BR-0037 KIAA0562 SNP Missense_Mutation 1 3750575 A C 2 50 BRCA BR-0037 TMEM201 SNP Silent 1 9657051 G A 44 63 BRCA BR-0037 KNDC1 SNP Missense_Mutation 10 135020410 A T 4 70 BRCA BR-0037 CUBN SNP Missense_Mutation 10 17113567 C T 27 63 BRCA BR-0037 ANK3 SNP Silent 10 61833946 A G 12 50 BRCA BR-0037 LUZP2 SNP Splice_site 11 25071584 C G 26 50 BRCA BR-0037 CRY2 SNP Missense_Mutation 11 45891654 C G 28 79 BRCA BR-0037 P2RX3 SNP Splice_site 11 57135845 G T 42 89 BRCA BR-0037 MARK2 SNP Silent 11 63670197 G A 46 54 BRCA BR-0037 KRT83 SNP Silent 12 52715099 G A 47 39 BRCA BR-0037 OSBPL8 SNP Missense_Mutation 12 76791497 C T 30 100 BRCA BR-0037 HAUS4 SNP Splice_Site 14 23419522 C G 18 77 BRCA BR-0037 MGA SNP Missense_Mutation 15 42005418 T C 55 90 BRCA BR-0037 CAPN3 SNP Missense_Mutation 15 42695961 G A 40 79 BRCA BR-0037 ZFP106 SNP Silent 15 42743660 G A 46 54 BRCA BR-0037 ZSCAN29 SNP Missense_Mutation 15 43653659 T C 51 87 BRCA BR-0037 SLC28A2 SNP Missense_Mutation 15 45558310 C G 18 98 BRCA BR-0037 NEIL1 SNP Missense_Mutation 15 75644477 G C 41 72 BRCA BR-0037 MEX3B SNP Missense_Mutation 15 82336502 C T 32 98 BRCA BR-0037 VWA3A SNP Missense_Mutation 16 22159506 G A 40 60 BRCA BR-0037 ZNF48 SNP Missense_Mutation 16 30408763 T G 51 51 BRCA BR-0037 PLA2G15 SNP Missense_Mutation 16 68293390 G A 47 76 BRCA BR-0037 NUDT7 SNP Silent 16 77775577 G T 47 58 BRCA BR-0037 CENPBD1 SNP Missense_Mutation 16 90038218 T C 54 56 BRCA BR-0037 MED1 SNP Missense_Mutation 17 37566459 G T 33 92 BRCA BR-0037 CCDC45 SNP Missense_Mutation 17 62533759 G T 47 86 BRCA BR-0037 ITGB4 SNP Silent 17 73745104 C G 21 55 BRCA BR-0037 TMEM105 SNP Missense_Mutation 17 79288225 G A 39 32 BRCA BR-0037 LAMA3 SNP Missense_Mutation 18 21419754 C A 18 83 BRCA BR-0037 ASXL3 SNP Missense_Mutation 18 31324601 T A 55 69 BRCA BR-0037 MYO5B SNP Missense_Mutation 18 47506837 C T 29 86 BRCA BR-0037 DHX34 SNP Silent 19 47861209 C T 21 72 BRCA BR-0037 VRK3 SNP Silent 19 50519321 C T 18 53 BRCA BR-0037 AMMECR1L SNP Missense_Mutation 2 128627055 A T 16 89 BRCA BR-0037 DTNB SNP Splice_site 2 25861962 A G 6 52 BRCA BR-0037 TMEM214 SNP Missense_Mutation 2 27258053 C G 32 77 BRCA BR-0037 C2orf53 SNP Missense_Mutation 2 27360882 G A 43 46 BRCA BR-0037 SLC5A6 SNP Missense_Mutation 2 27424919 C G 21 93 BRCA BR-0037 EMILIN3 SNP Missense_Mutation 20 39991097 C T 28 61 BRCA BR-0037 ARFGAP3 SNP Missense_Mutation 22 43203153 C T 27 87 BRCA BR-0037 PKDREJ SNP Missense_Mutation 22 46653350 A G 1 75 BRCA BR-0037 MOV10L1 SNP Silent 22 50596512 C T 26 54 BRCA BR-0037 ELF4 SNP Silent 23 129203349 G A 40 38 BRCA BR-0037 MXRA5 SNP Missense_Mutation 23 3242690 G A 45 61 BRCA BR-0037 SHROOM2 SNP Missense_Mutation 23 9914787 G A 38 93 BRCA BR-0037 SRPX2 SNP Splice_site 23 99901322 G A 47 76 BRCA BR-0037 SLC6A11 SNP Splice_site 3 10975852 G T 39 54 BRCA BR-0037 TAGLN3 SNP Missense_Mutation 3 111719701 A G 3 88 BRCA BR-0037 AADACL2 SNP Missense_Mutation 3 151463440 G A 42 77 BRCA BR-0037 SLITRK3 SNP Silent 3 164907809 C T 24 67 BRCA BR-0037 LSG1 SNP Missense_Mutation 3 194369500 C A 28 88 BRCA BR-0037 GRM7 SNP Silent 3 6903528 T C 63 51 BRCA BR-0037 ARSJ SNP Missense_Mutation 4 114824575 C A 21 97 BRCA BR-0037 CCKAR SNP Silent 4 26483527 G A 39 46 BRCA BR-0037 FAM114A1 SNP Missense_Mutation 4 38907456 G C 46 50 BRCA BR-0037 KLB SNP Missense_Mutation 4 39408830 G C 43 96 BRCA BR-0037 TMPRSS11A SNP Missense_Mutation 4 68780348 C G 17 94 BRCA BR-0037 PTPN13 SNP Missense_Mutation 4 87593576 G T 46 73 BRCA BR-0037 FGF1 SNP Splice_Site 5 141993728 T G 55 63 BRCA BR-0037 BASP1 SNP Silent 5 17275340 C T 29 50 BRCA BR-0037 NIPBL SNP Silent 5 37024770 A G 7 55 BRCA BR-0037 PPWD1 SNP Missense_Mutation 5 64880896 G C 47 69 BRCA BR-0037 THBS4 SNP Missense_Mutation 5 79372826 G T 33 100 BRCA BR-0037 DDR1 SNP Missense_Mutation 6 30864488 C G 28 95 BRCA BR-0037 PNRC1 SNP Missense_Mutation 6 89793572 A T 7 70 BRCA BR-0037 TAS2R5 SNP Silent 7 141490923 C G 32 50 BRCA BR-0037 OSBPL3 SNP Missense_Mutation 7 24839861 A G 15 89 BRCA BR-0037 MYO1G SNP Splice_Site 7 45010660 T G 55 83 BRCA BR-0037 OXR1 SNP Missense_Mutation 8 107695482 A T 2 89 BRCA BR-0037 CSMD3 SNP Nonsense_Mutation 8 113668441 G T 44 52 BRCA BR-0037 ATAD2 SNP Missense_Mutation 8 124358376 G A 41 60 BRCA BR-0037 DLC1 SNP Missense_Mutation 8 12957756 G A 43 99 BRCA BR-0037 CPNE3 SNP Missense_Mutation 8 87570608 G C 33 58 BRCA BR-0037 PTGR1 SNP Missense_Mutation 9 114337025 G T 47 49 BRCA BR-0038 TAS1R2 SNP Missense_Mutation 1 19166911 C T 27 24 BRCA BR-0038 OR2G2 SNP Missense_Mutation 1 247752053 G A 40 56 BRCA BR-0038 ZNF365 SNP Silent 10 64136387 T C 58 43 BRCA BR-0038 TSPAN31 SNP Missense_Mutation 12 58140490 A G 12 53 BRCA BR-0038 NEURL4 SNP Missense_Mutation 17 7230319 T C 60 65 BRCA BR-0038 INSR SNP Missense_Mutation 19 7184546 C T 25 94 BRCA BR-0038 SCN1A SNP Missense_Mutation 2 166930050 G A 40 100 BRCA BR-0038 RAB40A SNP Missense_Mutation 23 102755148 C A 30 60 BRCA BR-0038 TBC1D8B SNP Missense_Mutation 23 106097474 G A 37 89 BRCA BR-0038 OTUD6A SNP Missense_Mutation 23 69282975 G A 37 60 BRCA BR-0038 GPR37 SNP Missense_Mutation 7 124386691 G A 40 80 BRCA BR-0039 KIF26B SNP Missense_Mutation 1 245849622 G A 40 49 BRCA BR-0039 PODN SNP Silent 1 53543383 G A 39 50 BRCA BR-0039 SEC31B SNP Silent 10 102247838 C T 21 51 BRCA BR-0039 ITIH2 SNP Missense_Mutation 10 7786854 G A 40 48 BRCA BR-0039 TAS2R43 SNP Missense_Mutation 12 11244734 G C 41 41 BRCA BR-0039 CGNL1 SNP Missense_Mutation 15 57835925 A T 11 92 BRCA BR-0039 OGFOD1 SNP Missense_Mutation 16 56501116 A G 16 52 BRCA BR-0039 TBKBP1 SNP Silent 17 45785784 C T 23 24 BRCA BR-0039 MPO SNP Silent 17 56356964 G A 38 48 BRCA BR-0039 LRRN4 SNP Missense_Mutation 20 6022177 C T 23 88 BRCA BR-0039 PCDH19 SNP Missense_Mutation 23 99661930 C T 19 100 BRCA BR-0039 TTBK1 SNP Missense_Mutation 6 43230732 G A 44 98 BRCA BR-0040 ARHGEF11 SNP Missense_Mutation 1 156910011 C T 27 78 BRCA BR-0040 FAM5C SNP Missense_Mutation 1 190067323 C T 19 97 BRCA BR-0040 ZMYM4 SNP Silent 1 35857853 A G 8 44 BRCA BR-0040 KIAA0319L SNP Missense_Mutation 1 35940501 T C 56 68 BRCA BR-0040 MLL SNP Missense_Mutation 11 118369154 C T 29 100 BRCA BR-0040 TUBA1A SNP Missense_Mutation 12 49579107 G A 43 97 BRCA BR-0040 MYH8 SNP Silent 17 10293783 G T 45 56 BRCA BR-0040 SPATA20 SNP De_novo_Start_OutOfFrame 17 48625805 C A 24 94 BRCA BR-0040 COIL SNP Silent 17 55027997 A C 11 51 BRCA BR-0040 ACE SNP Missense_Mutation 17 61566084 C T 27 61 BRCA BR-0040 MFSD11 SNP Silent 17 74774341 G A 45 57 BRCA BR-0040 C17orf68 SNP Silent 17 8139173 C A 29 47 BRCA BR-0040 CCNE1 SNP Missense_Mutation 19 30313201 C T 20 100 BRCA BR-0040 TLR8 SNP Missense_Mutation 23 12939635 G C 48 42 BRCA BR-0040 DIAPH2 SNP Missense_Mutation 23 96220134 G T 36 70 BRCA BR-0040 GALNTL2 SNP Nonsense_Mutation 3 16264146 G T 41 54 BRCA BR-0040 OR5H6 SNP Missense_Mutation 3 97983498 G A 48 67 BRCA BR-0040 TTC37 SNP Missense_Mutation 5 94860206 C G 32 81 BRCA BR-0040 EYS SNP Missense_Mutation 6 66063503 C T 25 63 BRCA BR-0040 FOXP2 SNP Missense_Mutation 7 114282656 G A 36 73 BRCA BR-0040 C8orf79 SNP Missense_Mutation 8 12878742 A G 9 51 BRCA BR-0040 RHOBTB2 SNP Splice_Site 8 22862989 G T 44 94 BRCA BR-0041 EPC1 SNP Missense_Mutation 10 32594844 G A 38 76 BRCA BR-0041 PTEN SNP Missense_Mutation 10 89692871 G T 48 96 BRCA BR-0041 CACNA2D4 SNP Missense_Mutation 12 1995484 C T 23 99 BRCA BR-0041 STRA6 SNP Missense_Mutation 15 74494523 T C 55 43 BRCA BR-0041 TTC23 SNP Missense_Mutation 15 99678288 T A 64 42 BRCA BR-0041 MYH2 SNP Missense_Mutation 17 10451116 G A 38 47 BRCA BR-0041 SDK1 SNP Silent 7 4150342 G A 35 52 BRCA BR-0042 FAM40A SNP Missense_Mutation 1 110590469 G T 41 96 BRCA BR-0042 HSD3B1 SNP Missense_Mutation 1 120057083 C G 18 84 BRCA BR-0042 ADCY10 SNP Missense_Mutation 1 167868761 A G 8 72 BRCA BR-0042 PHRF1 SNP Silent 11 601611 G A 40 49 BRCA BR-0042 CNGA4 SNP Missense_Mutation 11 6262873 G A 38 67 BRCA BR-0042 SLC25A45 SNP Missense_Mutation 11 65146870 C A 22 66 BRCA BR-0042 CREBZF SNP Silent 11 85375755 C T 28 49 BRCA BR-0042 AKAP3 SNP Missense_Mutation 12 4736611 C T 19 32 BRCA BR-0042 SLC26A10 SNP Missense_Mutation 12 58017819 C T 27 64 BRCA BR-0042 PIGQ SNP Splice_Site 16 624764 G T 44 95 BRCA BR-0042 CPAMD8 SNP Missense_Mutation 19 17104284 C A 30 91 BRCA BR-0042 SCN3A SNP Missense_Mutation 2 165987870 A G 13 93 BRCA BR-0042 TTN SNP Missense_Mutation 2 179571391 C T 32 100 BRCA BR-0042 TRIP12 SNP Missense_Mutation 2 230652351 C T 23 96 BRCA BR-0042 FBLN2 SNP Missense_Mutation 3 13659650 G T 43 85 BRCA BR-0042 SEC24B SNP Missense_Mutation 4 110447390 A G 4 92 BRCA BR-0042 TACC3 SNP Missense_Mutation 4 1725166 A C 13 50 BRCA BR-0042 TRPC7 SNP Missense_Mutation 5 135692628 C T 31 100 BRCA BR-0042 MAP1B SNP Silent 5 71492569 G A 34 62 BRCA BR-0042 VNN1 SNP Missense_Mutation 6 133013475 T C 62 68 BRCA BR-0042 MAS1L SNP Missense_Mutation 6 29455303 G A 37 40 BRCA BR-0042 GPR124 SNP Silent 8 37693128 G A 39 77 BRCA BR-0042 XKR5 SNP Missense_Mutation 8 6690345 C T 23 87 BRCA BR-0042 CNBD1 SNP Splice_site 8 87917311 G A 39 32 BRCA BR-0042 ZNF618 SNP Silent 9 116812387 G A 42 52 BRCA BR-0042 C5 SNP Missense_Mutation 9 123739055 C T 32 73 BRCA BR-0042 KCNV2 SNP Silent 9 2718651 C T 19 58 BRCA BR-0043 HAX1 SNP Missense_Mutation 1 154247635 G T 45 87 BRCA BR-0043 DCST2 SNP Splice_Site 1 155002718 C T 32 76 BRCA BR-0043 ARHGEF11 SNP Splice_Site 1 156950227 A T 6 74 BRCA BR-0043 SMG7 SNP Missense_Mutation 1 183498597 G C 39 81 BRCA BR-0043 RAB3GAP2 SNP Splice_Site 1 220325108 T A 55 93 BRCA BR-0043 RAB3GAP2 SNP Missense_Mutation 1 220363800 G A 47 83 BRCA BR-0043 GALNT2 SNP Missense_Mutation 1 230314051 C T 22 66 BRCA BR-0043 ERO1LB SNP Missense_Mutation 1 236389768 G C 48 76 BRCA BR-0043 ID3 SNP Missense_Mutation 1 23885845 C G 27 70 BRCA BR-0043 PAFAH2 SNP Missense_Mutation 1 26314812 C A 17 52 BRCA BR-0043 KIAA0319L SNP Missense_Mutation 1 35925917 G C 36 72 BRCA BR-0043 CLSPN SNP Missense_Mutation 1 36216949 C T 30 64 BRCA BR-0043 RLF SNP Missense_Mutation 1 40704720 A T 4 91 BRCA BR-0043 ZNF691 SNP Missense_Mutation 1 43317359 C T 27 54 BRCA BR-0043 C1orf210 SNP Silent 1 43748585 C T 32 53 BRCA BR-0043 BTF3L4 SNP Missense_Mutation 1 52552389 G T 48 98 BRCA BR-0043 C1orf175 SNP Missense_Mutation 1 55119440 A C 7 50 BRCA BR-0043 C1orf87 SNP Silent 1 60499283 T C 55 49 BRCA BR-0043 NEGR1 SNP Splice_site 1 72748004 A T 13 62 BRCA BR-0043 CRYZ SNP Missense_Mutation 1 75175906 G T 34 95 BRCA BR-0043 USP33 SNP Missense_Mutation 1 78181479 C G 29 82 BRCA BR-0043 ZNF326 SNP Missense_Mutation 1 90493018 G A 45 69 BRCA BR-0043 NEURL SNP Missense_Mutation 10 105344893 C T 26 63 BRCA BR-0043 SH3PXD2A SNP Missense_Mutation 10 105372616 G T 47 86 BRCA BR-0043 MKI67 SNP Missense_Mutation 10 129911813 G T 35 71 BRCA BR-0043 ITGA8 SNP Silent 10 15647728 A T 15 50 BRCA BR-0043 NEBL SNP Missense_Mutation 10 21158685 G T 33 75 BRCA BR-0043 KIF5B SNP Silent 10 32306264 G A 41 50 BRCA BR-0043 KIF5B SNP Missense_Mutation 10 32307480 C G 32 85 BRCA BR-0043 AKR1E2 SNP Missense_Mutation 10 4873002 G A 48 68 BRCA BR-0043 OGDHL SNP Missense_Mutation 10 50946245 C T 25 65 BRCA BR-0043 C10orf18 SNP Silent 10 5790880 A T 15 48 BRCA BR-0043 FAM13C SNP Silent 10 61112174 C T 27 47 BRCA BR-0043 COL13A1 SNP Splice_site 10 71688754 A T 3 64 BRCA BR-0043 GRID1 DNP Splice_Site 10 87379792 TG AA 55 90 BRCA BR-0043 PPP1R3C SNP Missense_Mutation 10 93389871 A G 4 79 BRCA BR-0043 CD3D SNP Silent 11 118211208 G C 33 13 BRCA BR-0043 HEPACAM SNP Silent 11 124793274 G C 35 54 BRCA BR-0043 BRSK2 DNP Missense_Mutation 11 1457318 TC AA 50 60 BRCA BR-0043 CAPRIN1 SNP Missense_Mutation 11 34093324 C A 29 98 BRCA BR-0043 TRIM6-TRIM34 SNP Missense_Mutation 11 5631443 C A 21 65 BRCA BR-0043 DTX4 DNP Splice_Site 11 58967247 GT AA 36 96 BRCA BR-0043 PHRF1 SNP Missense_Mutation 11 601646 C A 17 75 BRCA BR-0043 VPS37C SNP Missense_Mutation 11 60900783 C G 24 59 BRCA BR-0043 AHNAK SNP Missense_Mutation 11 62291375 A T 16 86 BRCA BR-0043 CNGA4 SNP Missense_Mutation 11 6262986 G A 41 96 BRCA BR-0043 C11orf85 SNP Missense_Mutation 11 64717892 C T 27 80 BRCA BR-0043 KDM2A SNP Silent 11 67022514 G A 33 86 BRCA BR-0043 SAPS3 SNP Missense_Mutation 11 68343431 C T 30 82 BRCA BR-0043 CPT1A SNP Missense_Mutation 11 68548122 C A 26 87 BRCA BR-0043 OR10A5 SNP Missense_Mutation 11 6867445 T A 56 55 BRCA BR-0043 RPS3 SNP Missense_Mutation 11 75110606 A G 16 57 BRCA BR-0043 OR10A3 SNP Missense_Mutation 11 7960701 A G 4 87 BRCA BR-0043 TRPV4 SNP Silent 12 110252227 C T 32 61 BRCA BR-0043 C12orf51 SNP Missense_Mutation 12 112666461 G T 47 96 BRCA BR-0043 MPHOSPH9 SNP Nonsense_Mutation 12 123702972 G T 45 56 BRCA BR-0043 SCARB1 SNP Nonsense_Mutation 12 125270835 G T 45 37 BRCA BR-0043 CASC1 SNP Nonsense_Mutation 12 25314062 G A 40 57 BRCA BR-0043 ARHGAP9 SNP Missense_Mutation 12 57870382 C T 27 76 BRCA BR-0043 MLF2 SNP Silent 12 6859111 C A 26 46 BRCA BR-0043 TMTC2 SNP Missense_Mutation 12 83360719 G C 41 82 BRCA BR-0043 ATP2B1 SNP Missense_Mutation 12 90010599 C T 29 100 BRCA BR-0043 PCCA SNP Missense_Mutation 13 100861645 C A 17 82 BRCA BR-0043 NALCN SNP Missense_Mutation 13 101756936 A C 4 93 BRCA BR-0043 KDELC1 SNP Nonsense_Mutation 13 103449273 A T 13 93 BRCA BR-0043 SACS SNP Missense_Mutation 13 23912051 C T 29 83 BRCA BR-0043 AKAP11 SNP Missense_Mutation 13 42874554 G T 48 85 BRCA BR-0043 WARS SNP Missense_Mutation 14 100813137 C G 17 100 BRCA BR-0043 BRF1 SNP Missense_Mutation 14 105684045 G T 46 57 BRCA BR-0043 RNASE10 SNP Missense_Mutation 14 20979175 A T 5 55 BRCA BR-0043 TGM1 SNP Silent 14 24723375 G T 47 63 BRCA BR-0043 RALGAPA1 DNP Missense_Mutation 14 36244927 TT AA 64 87 BRCA BR-0043 FAM179B SNP Missense_Mutation 14 45478195 A T 9 82 BRCA BR-0043 C14orf138 SNP Nonsense_Mutation 14 50582872 C A 29 79 BRCA BR-0043 PYGL SNP Missense_Mutation 14 51378925 C T 29 100 BRCA BR-0043 KIAA0586 SNP Missense_Mutation 14 58924516 C T 30 67 BRCA BR-0043 DCAF5 SNP Missense_Mutation 14 69522324 C A 21 100 BRCA BR-0043 SLC10A1 SNP Missense_Mutation 14 70246069 C T 29 64 BRCA BR-0043 RBM25 SNP Missense_Mutation 14 73538365 C G 29 81 BRCA BR-0043 TTLL5 SNP Missense_Mutation 14 76238192 C A 17 90 BRCA BR-0043 SERPINA11 SNP Splice_Site 14 94914468 C A 18 93 BRCA BR-0043 DICER1 SNP Missense_Mutation 14 95582153 C A 29 43 BRCA BR-0043 OR4N4 SNP Silent 15 22383021 G A 35 54 BRCA BR-0043 FBN1 SNP Missense_Mutation 15 48905236 G T 44 96 BRCA BR-0043 HDC SNP Missense_Mutation 15 50534887 C T 24 59 BRCA BR-0043 GLCE SNP Silent 15 69548709 C T 29 66 BRCA BR-0043 WDR93 SNP Missense_Mutation 15 90270498 G A 45 77 BRCA BR-0043 ST8SIA2 SNP Silent 15 93007612 G A 40 65 BRCA BR-0043 MCTP2 SNP Missense_Mutation 15 94857538 G A 46 57 BRCA BR-0043 RRN3 SNP Missense_Mutation 16 15178556 G A 35 82 BRCA BR-0043 SMG1 SNP Nonsense_Mutation 16 18853562 G T 45 100 BRCA BR-0043 CP110 SNP Missense_Mutation 16 19548855 C G 22 53 BRCA BR-0043 CORO7 SNP Missense_Mutation 16 4407193 C A 20 70 BRCA BR-0043 PPL SNP Nonsense_Mutation 16 4935978 C T 21 82 BRCA BR-0043 KIAA0182 SNP Missense_Mutation 16 85701872 C A 22 63 BRCA BR-0043 ABAT SNP Missense_Mutation 16 8866640 G C 41 97 BRCA BR-0043 KIAA0100 SNP Missense_Mutation 17 26961958 C G 30 99 BRCA BR-0043 GAS2L2 SNP Silent 17 34073223 G A 40 34 BRCA BR-0043 KRT23 SNP Missense_Mutation 17 39084790 C T 32 97 BRCA BR-0043 NBR1 SNP Missense_Mutation 17 41353785 C A 29 59 BRCA BR-0043 KPNB1 SNP Silent 17 45757958 G A 41 65 BRCA BR-0043 RSAD1 SNP Missense_Mutation 17 48559725 C G 22 69 BRCA BR-0043 NLRP1 SNP Silent 17 5436186 C G 26 48 BRCA BR-0043 STRADA SNP Missense_Mutation 17 61781704 G T 42 68 BRCA BR-0043 CCDC46 SNP Missense_Mutation 17 63739233 C T 29 85 BRCA BR-0043 GLOD4 SNP Missense_Mutation 17 674662 T A 63 70 BRCA BR-0043 SSTR2 SNP Missense_Mutation 17 71166504 G T 39 82 BRCA BR-0043 EIF5A SNP Missense_Mutation 17 7213067 G A 48 91 BRCA BR-0043 TTYH2 SNP Missense_Mutation 17 72245207 C A 21 53 BRCA BR-0043 ZBTB4 SNP Missense_Mutation 17 7365675 G A 41 77 BRCA BR-0043 TP53 SNP Missense_Mutation 17 7578271 T C 51 76 BRCA BR-0043 SLC38A10 SNP Missense_Mutation 17 79220723 T C 55 68 BRCA BR-0043 PIK3R5 SNP Silent 17 8790494 G C 43 55 BRCA BR-0043 SEH1L SNP Silent 18 12987035 A G 14 62 BRCA BR-0043 CEP192 SNP Silent 18 13056510 T C 55 41 BRCA BR-0043 METTL4 SNP Splice_Site 18 2547352 A T 14 89 BRCA BR-0043 SMCHD1 SNP Missense_Mutation 18 2777886 C G 30 70 BRCA BR-0043 RNF165 SNP Missense_Mutation 18 44030730 G C 45 100 BRCA BR-0043 GRP SNP Missense_Mutation 18 56892927 G A 41 50 BRCA BR-0043 TNPO2 SNP Missense_Mutation 19 12826265 T A 50 88 BRCA BR-0043 LPHN1 SNP Missense_Mutation 19 14272222 G C 35 90 BRCA BR-0043 JAK3 SNP Silent 19 17945414 G C 39 46 BRCA BR-0043 ZNF708 SNP Missense_Mutation 19 21477500 A C 16 40 BRCA BR-0043 ZNF536 SNP Missense_Mutation 19 30936564 G A 39 97 BRCA BR-0043 ZNF790 SNP Missense_Mutation 19 37310353 G A 36 51 BRCA BR-0043 ADCK4 SNP Silent 19 41206349 G A 34 51 BRCA BR-0043 ZNF223 SNP Missense_Mutation 19 44571332 A T 7 58 BRCA BR-0043 ZNF226 SNP Missense_Mutation 19 44679916 G T 45 50 BRCA BR-0043 ZNF235 SNP Nonsense_Mutation 19 44791829 G A 45 53 BRCA BR-0043 SYNGR4 SNP Silent 19 48878934 G A 38 19 BRCA BR-0043 TSKS SNP Missense_Mutation 19 50247529 G T 44 53 BRCA BR-0043 ZNF677 SNP Missense_Mutation 19 53741665 C G 20 49 BRCA BR-0043 LILRB2 SNP Silent 19 54783911 G A 43 55 BRCA BR-0043 SAPS1 SNP Silent 19 55752950 G C 41 43 BRCA BR-0043 ZNF132 SNP Missense_Mutation 19 58946140 C A 22 49 BRCA BR-0043 EMR1 SNP Splice_Site 19 6921722 A T 15 58 BRCA BR-0043 MUC16 SNP Silent 19 9020019 G C 35 53 BRCA BR-0043 SLC9A4 SNP Splice_Site 2 103125304 A T 15 85 BRCA BR-0043 HS6ST1 SNP Silent 2 129075925 C A 23 57 BRCA BR-0043 LRP1B SNP Nonsense_Mutation 2 141643896 C A 29 100 BRCA BR-0043 DPP4 SNP Missense_Mutation 2 162894870 G C 45 73 BRCA BR-0043 TTC21B SNP Missense_Mutation 2 166773886 C G 24 100 BRCA BR-0043 TRAK2 SNP Missense_Mutation 2 202260128 A C 5 90 BRCA BR-0043 SLC23A3 SNP Missense_Mutation 2 220033495 G A 41 61 BRCA BR-0043 COL6A3 SNP Missense_Mutation 2 238277503 G A 37 55 BRCA BR-0043 BIRC6 SNP Missense_Mutation 2 32707647 C G 29 97 BRCA BR-0043 REL SNP Missense_Mutation 2 61149161 G A 48 43 BRCA BR-0043 GKN2 SNP Splice_Site 2 69173594 T A 53 70 BRCA BR-0043 ALMS1 SNP Missense_Mutation 2 73717716 C T 24 63 BRCA BR-0043 SNX5 SNP Silent 20 17929537 A T 15 45 BRCA BR-0043 RALGAPA2 SNP Missense_Mutation 20 20565593 C A 20 59 BRCA BR-0043 ZNF343 SNP Silent 20 2465210 G A 35 55 BRCA BR-0043 DLGAP4 SNP Missense_Mutation 20 35075113 A C 11 89 BRCA BR-0043 SLA2 SNP Missense_Mutation 20 35243700 C G 29 73 BRCA BR-0043 SFRS6 SNP Missense_Mutation 20 42086693 G C 41 93 BRCA BR-0043 WFDC8 SNP Silent 20 44184359 T C 62 42 BRCA BR-0043 MOCS3 SNP Missense_Mutation 20 49576644 T A 59 88 BRCA BR-0043 RBM11 SNP Nonsense_Mutation 21 15599435 G T 45 75 BRCA BR-0043 LOC96610 SNP Splice_Site 22 23165809 G A 36 50 BRCA BR-0043 C22orf42 SNP Silent 22 32545759 C T 32 46 BRCA BR-0043 DRP2 SNP Missense_Mutation 23 100496767 C T 23 77 BRCA BR-0043 ATP2B3 SNP Silent 23 152815134 T A 53 51 BRCA BR-0043 FIGF SNP Missense_Mutation 23 15364311 G C 39 59 BRCA BR-0043 NHS SNP Silent 23 17745676 A G 3 46 BRCA BR-0043 MBTPS2 SNP Missense_Mutation 23 21887697 C A 25 62 BRCA BR-0043 MXRA5 SNP Missense_Mutation 23 3238678 A C 4 51 BRCA BR-0043 GPR128 SNP Missense_Mutation 3 100362172 A G 2 70 BRCA BR-0043 DZIP3 SNP Silent 3 108409735 C A 21 58 BRCA BR-0043 GOLGB1 SNP Nonsense_Mutation 3 121411106 G A 45 67 BRCA BR-0043 GOLGB1 SNP Missense_Mutation 3 121414202 A G 3 60 BRCA BR-0043 KALRN SNP Missense_Mutation 3 124431870 A G 9 67 BRCA BR-0043 PLXND1 SNP Missense_Mutation 3 129324791 C T 27 74 BRCA BR-0043 STAG1 SNP Silent 3 136060306 C T 29 53 BRCA BR-0043 MRAS SNP Missense_Mutation 3 138091790 G C 43 97 BRCA BR-0043 IGSF10 SNP Missense_Mutation 3 151163265 C T 20 41 BRCA BR-0043 RFTN1 SNP Nonsense_Mutation 3 16411660 C T 21 90 BRCA BR-0043 PLCL2 SNP Missense_Mutation 3 17053630 C A 17 100 BRCA BR-0043 PLD1 SNP Missense_Mutation 3 171431762 C G 18 95 BRCA BR-0043 SPATA16 SNP Missense_Mutation 3 172643276 T A 63 75 BRCA BR-0043 PEX5L SNP Silent 3 179592121 C T 31 52 BRCA BR-0043 EFHB SNP Nonsense_Mutation 3 19940930 A T 13 52 BRCA BR-0043 CCR4 SNP Silent 3 32994977 G T 48 51 BRCA BR-0043 DNAH1 SNP Silent 3 52407059 C A 25 52 BRCA BR-0043 ITIH3 SNP Missense_Mutation 3 52830785 T A 51 30 BRCA BR-0043 CACNA2D3 SNP Missense_Mutation 3 54676258 C A 21 100 BRCA BR-0043 ERC2 SNP Nonsense_Mutation 3 56330084 A T 13 93 BRCA BR-0043 USP38 SNP Silent 4 144127335 A G 8 36 BRCA BR-0043 PI4K2B SNP Missense_Mutation 4 25278641 A T 13 54 BRCA BR-0043 ARAP2 SNP Missense_Mutation 4 36093559 G T 45 81 BRCA BR-0043 PDGFRA SNP Missense_Mutation 4 55129872 T G 61 61 BRCA BR-0043 AASDH SNP Nonsense_Mutation 4 57209041 A T 14 87 BRCA BR-0043 SRP72 SNP Missense_Mutation 4 57366812 C A 29 67 BRCA BR-0043 UGT2A1 SNP Silent 4 70455120 A T 14 35 BRCA BR-0043 IL8 SNP Silent 4 74606393 C G 23 44 BRCA BR-0043 FAM190A DNP Missense_Mutation 4 91230189 AC TT 14 89 BRCA BR-0043 HSD17B4 SNP Missense_Mutation 5 118824892 G T 48 41 BRCA BR-0043 ADAM19 SNP Missense_Mutation 5 156916157 G A 45 86 BRCA BR-0043 NSD1 SNP Silent 5 176562653 C A 32 75 BRCA BR-0043 C5orf35 SNP Silent 5 56205493 G A 43 54 BRCA BR-0043 RGNEF SNP Missense_Mutation 5 73045678 A T 16 52 BRCA BR-0043 CMYA5 SNP Missense_Mutation 5 79025549 G A 45 59 BRCA BR-0043 RNF217 SNP Missense_Mutation 6 125404031 A T 16 82 BRCA BR-0043 TAB2 SNP Silent 6 149699264 A T 14 55 BRCA BR-0043 RAET1E SNP Missense_Mutation 6 150211113 C G 28 52 BRCA BR-0043 SLC22A3 SNP Silent 6 160858188 G T 39 21 BRCA BR-0043 TDP2 SNP Nonsense_Mutation 6 24658843 A T 13 89 BRCA BR-0043 OR12D3 SNP Missense_Mutation 6 29342525 C G 28 45 BRCA BR-0043 ABCC10 SNP Missense_Mutation 6 43410723 C T 32 83 BRCA BR-0043 PKHD1 SNP Silent 6 51618057 T A 51 35 BRCA BR-0043 COL21A1 SNP Missense_Mutation 6 56047337 A T 14 62 BRCA BR-0043 PHF3 SNP Missense_Mutation 6 64423098 C G 32 63 BRCA BR-0043 DSP SNP Missense_Mutation 6 7575708 C A 17 84 BRCA BR-0043 COL12A1 SNP Missense_Mutation 6 75841672 G T 48 63 BRCA BR-0043 GNB2 SNP Missense_Mutation 7 100275223 T A 53 86 BRCA BR-0043 ACHE SNP Silent 7 100491638 G T 47 29 BRCA BR-0043 IFRD1 SNP Missense_Mutation 7 112112311 C T 24 76 BRCA BR-0043 PPP1R3A SNP Missense_Mutation 7 113519622 C G 32 58 BRCA BR-0043 ZC3HAV1 SNP Missense_Mutation 7 138764794 G C 40 35 BRCA BR-0043 TAS2R39 SNP Missense_Mutation 7 142881400 C A 21 50 BRCA BR-0043 OR2A1 SNP Missense_Mutation 7 143929663 A G 11 56 BRCA BR-0043 DPP6 SNP Missense_Mutation 7 154667765 G A 39 67 BRCA BR-0043 CREB5 SNP Silent 7 28843965 G A 46 60 BRCA BR-0043 POR SNP Missense_Mutation 7 75613071 C G 18 57 BRCA BR-0043 CCDC146 SNP Missense_Mutation 7 76866286 C T 24 73 BRCA BR-0043 ZSCAN21 SNP Missense_Mutation 7 99655492 C A 29 63 BRCA BR-0043 FBXO43 SNP Silent 8 101153018 C T 32 71 BRCA BR-0043 DSCC1 SNP Missense_Mutation 8 120859241 C T 17 73 BRCA BR-0043 MTBP SNP Missense_Mutation 8 121463510 G C 45 68 BRCA BR-0043 MTBP SNP Nonsense_Mutation 8 121534900 A T 13 89 BRCA BR-0043 CDCA2 SNP Missense_Mutation 8 25364208 G A 45 53 BRCA BR-0043 MYST3 SNP Missense_Mutation 8 41791065 C G 28 98 BRCA BR-0043 ADHFE1 SNP Missense_Mutation 8 67364198 G C 41 87 BRCA BR-0043 ZFHX4 SNP Missense_Mutation 8 77764415 A G 12 90 BRCA BR-0043 NANS SNP Missense_Mutation 9 100843349 G C 47 78 BRCA BR-0043 OR1J2 SNP Missense_Mutation 9 125273354 A T 12 75 BRCA BR-0043 SPTAN1 SNP Missense_Mutation 9 131339689 C T 17 69 BRCA BR-0043 RAPGEF1 SNP Silent 9 134454962 C T 24 76 BRCA BR-0043 C9orf9 SNP Missense_Mutation 9 135763754 C G 22 86 BRCA BR-0043 PSIP1 SNP Nonsense_Mutation 9 15490112 C A 24 88 BRCA BR-0043 DNAJA1 SNP Nonsense_Mutation 9 33034298 T A 61 86 BRCA BR-0043 NFX1 SNP Missense_Mutation 9 33294546 C G 18 61 BRCA BR-0043 UNC13B SNP Missense_Mutation 9 35377541 G A 45 100 BRCA BR-0044 CGN SNP Missense_Mutation 1 151507579 C A 17 68 BRCA BR-0044 FLG SNP Missense_Mutation 1 152276900 G T 48 57 BRCA BR-0044 ILF2 SNP Missense_Mutation 1 153640948 G C 34 76 BRCA BR-0044 KIAA1804 SNP Missense_Mutation 1 233497898 G A 37 99 BRCA BR-0044 KMO SNP Silent 1 241713047 C T 24 51 BRCA BR-0044 ZDHHC18 SNP Missense_Mutation 1 27159092 C A 17 83 BRCA BR-0044 MSH4 SNP Missense_Mutation 1 76276440 G A 48 95 BRCA BR-0044 DDX55 SNP Missense_Mutation 12 124099831 T A 49 51 BRCA BR-0044 C1S SNP Silent 12 7175782 C T 19 30 BRCA BR-0044 MTA1 SNP Splice_site 14 105924709 G T 39 95 BRCA BR-0044 SRCAP SNP Silent 16 30718901 C T 25 47 BRCA BR-0044 P2RX1 SNP Silent 17 3819400 G A 41 51 BRCA BR-0044 LILRB5 SNP Silent 19 54756357 C G 25 48 BRCA BR-0044 FOXA2 SNP Missense_Mutation 20 22563170 G T 41 97 BRCA BR-0044 N6AMT1 SNP Missense_Mutation 21 30252217 G A 43 86 BRCA BR-0044 SCARF2 SNP Silent 22 20784102 C T 27 46 BRCA BR-0044 C1GALT1C1 SNP Missense_Mutation 23 119760819 C A 31 55 BRCA BR-0044 TKTL1 SNP Missense_Mutation 23 153541072 A G 2 50 BRCA BR-0044 CNKSR2 SNP Missense_Mutation 23 21550106 A T 3 60 BRCA BR-0044 ARSD SNP Missense_Mutation 23 2843708 G A 38 68 BRCA BR-0044 GRIP2 SNP Missense_Mutation 3 14559292 C A 30 88 BRCA BR-0044 COL7A1 SNP Silent 3 48629233 C T 21 72 BRCA BR-0044 PDS5A SNP Missense_Mutation 4 39918720 A T 16 93 BRCA BR-0044 HIST1H2BD SNP Missense_Mutation 6 26158426 C G 26 67 BRCA BR-0044 COL1A2 SNP Missense_Mutation 7 94057679 G A 37 78 BRCA BR-0044 FAM91A1 SNP Missense_Mutation 8 124780997 C T 26 92 BRCA BR-0045 TIE1 SNP Missense_Mutation 1 43772532 A G 10 69 BRCA BR-0045 FAM124A SNP Silent 13 51825974 G A 38 34 BRCA BR-0045 WHAMM SNP Missense_Mutation 15 83495168 T C 59 85 BRCA BR-0045 CHD2 SNP Missense_Mutation 15 93547935 T C 52 89 BRCA BR-0045 TP53 SNP Missense_Mutation 17 7578442 T C 57 69 BRCA BR-0045 CYP4F11 SNP Missense_Mutation 19 16035680 G A 38 56 BRCA BR-0045 COL4A4 SNP Missense_Mutation 2 227877004 C T 30 80 BRCA BR-0045 TBC1D23 SNP Splice_site 3 100034943 G A 42 53 BRCA BR-0045 ADCY5 SNP Silent 3 123046525 G A 40 49 BRCA BR-0045 ERBB2IP SNP Silent 5 65370923 C A 22 74 BRCA BR-0045 SYNJ2 SNP Missense_Mutation 6 158516698 A G 4 66 BRCA BR-0046 HMCN1 SNP Silent 1 185897792 C T 19 47 BRCA BR-0046 NUAK1 SNP Missense_Mutation 12 106460807 C A 30 99 BRCA BR-0046 CPS1 SNP Silent 2 211541854 T C 52 54 BRCA BR-0046 DEF6 SNP Missense_Mutation 6 35280248 G A 42 81 BRCA BR-0046 LRP12 SNP Missense_Mutation 8 105521275 C G 31 69 BRCA BR-0047 RAPGEF3 SNP Missense_Mutation 12 48137843 G C 36 42 BRCA BR-0047 MYO1A SNP Missense_Mutation 12 57434971 T G 54 54 BRCA BR-0047 SNRPA1 SNP Missense_Mutation 15 101833323 G A 34 93 BRCA BR-0047 NLRP4 SNP Silent 19 56369935 C G 22 68 BRCA BR-0047 ZNF148 SNP Missense_Mutation 3 124951810 A G 2 87 BRCA BR-0047 MCF2L2 SNP Silent 3 182910812 C T 23 46 BRCA BR-0047 SRF SNP Silent 6 43146042 C T 23 37 BRCA BR-0047 DAPK1 SNP Missense_Mutation 9 90321197 C T 27 70 BRCA BR-0048 PIGM SNP Silent 1 160000744 C T 29 49 BRCA BR-0048 HMCN1 SNP Missense_Mutation 1 186113680 C T 27 99 BRCA BR-0048 PLEKHA1 SNP Missense_Mutation 10 124152759 G C 33 100 BRCA BR-0048 TMEM151A SNP Silent 11 66062542 C T 18 53 BRCA BR-0048 RIMKLB SNP Missense_Mutation 12 8906546 G A 38 91 BRCA BR-0048 PROX2 SNP Missense_Mutation 14 75329255 G A 46 48 BRCA BR-0048 NCOR1 SNP Nonsense_Mutation 17 16004664 G A 45 71 BRCA BR-0048 GRIN2D SNP Silent 19 48908065 G A 35 63 BRCA BR-0048 AIFM1 SNP Splice_site 23 129283446 G C 33 63 BRCA BR-0048 IL2RG SNP Missense_Mutation 23 70329105 T A 52 46 BRCA BR-0048 MECOM SNP Missense_Mutation 3 168834066 G C 41 76 BRCA BR-0048 PRDM5 SNP Missense_Mutation 4 121739647 G C 45 74 BRCA BR-0048 PPARGC1A SNP Nonsense_Mutation 4 23814420 G A 38 97 BRCA BR-0048 ADAMTS3 SNP Silent 4 73161418 C T 31 43 BRCA BR-0048 MYLK4 SNP Missense_Mutation 6 2685615 C T 19 61 BRCA BR-0048 MAP3K7 SNP Missense_Mutation 6 91281489 G A 34 100 BRCA BR-0048 ATAD2 SNP Silent 8 124381366 A G 11 73 BRCA BR-0048 LPAR1 SNP Missense_Mutation 9 113637797 G C 44 61 BRCA BR-0048 PAPPA SNP Missense_Mutation 9 118997852 C T 23 89 BRCA BR-0049 MTOR SNP Missense_Mutation 1 11188153 T C 61 90 BRCA BR-0049 PFKP SNP Nonsense_Mutation 10 3155342 C T 27 78 BRCA BR-0049 MYBPC3 SNP Missense_Mutation 11 47373032 C T 23 75 BRCA BR-0049 OR8K1 SNP Missense_Mutation 11 56113775 G A 48 53 BRCA BR-0049 SGPP1 SNP Missense_Mutation 14 64152927 G A 46 65 BRCA BR-0049 PRKCB SNP Missense_Mutation 16 23847575 C T 23 52 BRCA BR-0049 TECR SNP Missense_Mutation 19 14675031 C T 27 71 BRCA BR-0049 NR2C2AP SNP Silent 19 19313663 A T 11 41 BRCA BR-0049 VASP SNP Nonsense_Mutation 19 46026024 C T 31 57 BRCA BR-0049 MAP4K4 SNP Silent 2 102481445 A C 6 47 BRCA BR-0049 ZNF518B SNP Missense_Mutation 4 10445956 C T 27 63 BRCA BR-0049 CTNND2 SNP Missense_Mutation 5 11022918 C T 31 86 BRCA BR-0049 SLC25A2 SNP Silent 5 140683316 C T 19 50 BRCA BR-0049 HIST1H4B SNP Silent 6 26027388 G A 47 69 BRCA BR-0049 PHF14 SNP Missense_Mutation 7 11150987 T C 51 92 BRCA BR-0049 NEUROD6 SNP Silent 7 31377935 G A 40 52 BRCA BR-0050 HAO2 SNP Silent 1 119936457 G A 42 51 BRCA BR-0050 HRNR SNP Silent 1 152186043 A G 3 52 BRCA BR-0050 MTF1 SNP Missense_Mutation 1 38322978 A G 4 90 BRCA BR-0050 RNF220 SNP Missense_Mutation 1 45101709 G C 42 94 BRCA BR-0050 C11orf84 SNP Missense_Mutation 11 63585444 C G 23 59 BRCA BR-0050 VWF SNP Missense_Mutation 12 6184683 G T 44 72 BRCA BR-0050 MYCBP2 SNP Missense_Mutation 13 77631195 A T 7 75 BRCA BR-0050 GZMH SNP Silent 14 25078790 A G 9 48 BRCA BR-0050 CHSY1 SNP Missense_Mutation 15 101719026 C T 31 100 BRCA BR-0050 USP10 SNP Silent 16 84779065 C T 25 50 BRCA BR-0050 MYO18A SNP Missense_Mutation 17 27448187 G T 44 84 BRCA BR-0050 ZZEF1 SNP Silent 17 3989946 C T 31 31 BRCA BR-0050 PLD2 SNP Missense_Mutation 17 4722092 C T 29 87 BRCA BR-0050 C17orf60 SNP Splice_site 17 62461656 C G 25 56 BRCA BR-0050 GALK1 SNP Missense_Mutation 17 73754633 C T 19 94 BRCA BR-0050 TP53 SNP Nonsense_Mutation 17 7578431 G A 48 84 BRCA BR-0050 CYP4F12 SNP Missense_Mutation 19 15791315 G T 46 48 BRCA BR-0050 C19orf29 SNP Missense_Mutation 19 3620743 T C 63 73 BRCA BR-0050 ZNF226 SNP Missense_Mutation 19 44679743 G T 45 72 BRCA BR-0050 RPL28 SNP Missense_Mutation 19 55898112 G A 41 53 BRCA BR-0050 SLC9A4 SNP Missense_Mutation 2 103121870 G A 37 87 BRCA BR-0050 MARCH7 SNP Missense_Mutation 2 160599666 A G 7 68 BRCA BR-0050 SCN3A SNP Missense_Mutation 2 165984397 T C 58 77 BRCA BR-0050 TTN SNP Missense_Mutation 2 179628969 G C 39 98 BRCA BR-0050 DTNB SNP Missense_Mutation 2 25611118 T G 58 88 BRCA BR-0050 EHD3 SNP Silent 2 31467269 G A 33 65 BRCA BR-0050 DYNC2LI1 SNP Splice_site 2 44036905 G T 45 58 BRCA BR-0050 GZF1 SNP Splice_Site 20 23347735 G A 44 98 BRCA BR-0050 MYO18B SNP Silent 22 26193997 C T 27 33 BRCA BR-0050 GLUD2 SNP Silent 23 120181700 C T 27 55 BRCA BR-0050 ABHD10 SNP Missense_Mutation 3 111698033 C T 27 53 BRCA BR-0050 STXBP5L SNP Missense_Mutation 3 120833858 C T 32 94 BRCA BR-0050 WDFY3 SNP Nonsense_Mutation 4 85722828 G A 45 100 BRCA BR-0050 AFF1 SNP Missense_Mutation 4 88026812 G A 36 91 BRCA BR-0050 ADAP1 SNP Missense_Mutation 7 944762 A T 2 87 BRCA BR-0050 AZIN1 SNP Missense_Mutation 8 103842081 C T 29 88 BRCA BR-0050 RHPN1 SNP Missense_Mutation 8 144463459 A G 11 72 BRCA BR-0050 BAT2L1 SNP Missense_Mutation 9 134305540 T A 50 90 BRCA BR-0050 REXO4 SNP Missense_Mutation 9 136277467 C A 30 93 BRCA BR-0050 KIAA1797 SNP Nonsense_Mutation 9 20993263 G A 42 87 BRCA BR-0050 KIAA1045 SNP Missense_Mutation 9 34976642 T G 60 83 BRCA BR-0051 VCL SNP Splice_site 10 75830841 G T 35 97 BRCA BR-0051 ELMOD1 SNP Missense_Mutation 11 107506439 G A 40 97 BRCA BR-0051 KLRK1 SNP Missense_Mutation 12 10539532 G A 41 39 BRCA BR-0051 EP400 SNP Silent 12 132508458 C G 29 63 BRCA BR-0051 FGF23 SNP Silent 12 4481850 G A 45 62 BRCA BR-0051 PIP4K2C SNP Silent 12 57994194 C T 32 53 BRCA BR-0051 SPATA13 SNP Missense_Mutation 13 24858395 C A 28 64 BRCA BR-0051 KIAA1609 SNP Silent 16 84513543 G C 41 52 BRCA BR-0051 TP53 SNP Splice_Site 17 7578291 T A 53 81 BRCA BR-0051 PPAN-P2RY11 SNP Missense_Mutation 19 10224579 A G 16 65 BRCA BR-0051 TNFSF9 SNP Silent 19 6534903 C T 31 40 BRCA BR-0051 CASS4 SNP Missense_Mutation 20 54987534 T C 51 38 BRCA BR-0051 RRP1B SNP Missense_Mutation 21 45113193 T C 54 51 BRCA BR-0051 KCNIP4 SNP Splice_site 4 20760446 C T 30 98 BRCA BR-0051 UBAP2 SNP Missense_Mutation 9 33960827 T G 56 69 BRCA BR-0052 AVPR1B SNP Silent 1 206225061 C A 32 69 BRCA BR-0052 RHD SNP Missense_Mutation 1 25599144 G A 38 26 BRCA BR-0052 ARID1A SNP Missense_Mutation 1 27101109 T A 58 89 BRCA BR-0052 DPH2 SNP Missense_Mutation 1 44437418 C T 23 64 BRCA BR-0052 MMP7 SNP Silent 11 102398262 C T 27 39 BRCA BR-0052 FAM118B SNP Nonsense_Mutation 11 126126603 A T 11 64 BRCA BR-0052 PTPRB SNP Missense_Mutation 12 70946788 A C 7 55 BRCA BR-0052 AHNAK2 SNP Missense_Mutation 14 105408166 C T 26 51 BRCA BR-0052 HECTD1 SNP Missense_Mutation 14 31582605 T A 64 72 BRCA BR-0052 AKAP6 SNP Missense_Mutation 14 33292886 A G 12 48 BRCA BR-0052 ST6GALNAC1 SNP Missense_Mutation 17 74622865 G T 38 46 BRCA BR-0052 WDR45L SNP Splice_Site 17 80601900 C G 24 91 BRCA BR-0052 RYR1 SNP Silent 19 38939013 G A 46 50 BRCA BR-0052 ZNF222 SNP Missense_Mutation 19 44536383 T C 54 54 BRCA BR-0052 CTCFL SNP Nonsense_Mutation 20 56087753 G C 36 98 BRCA BR-0052 PTK6 SNP Silent 20 62161576 G A 33 59 BRCA BR-0052 RBM10 SNP Missense_Mutation 23 47030445 C G 22 59 BRCA BR-0052 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA BR-0052 CDH10 SNP Missense_Mutation 5 24593440 G A 40 77 BRCA BR-0052 RAI14 SNP Missense_Mutation 5 34830802 G C 41 98 BRCA BR-0052 PLK2 SNP Missense_Mutation 5 57751187 A C 8 52 BRCA BR-0052 SRF SNP Splice_site 6 43146620 G A 35 73 BRCA BR-0052 HOXA3 SNP Silent 7 27148179 G A 44 73 BRCA BR-0052 PPP2R2A SNP Missense_Mutation 8 26218584 T C 52 92 BRCA BR-0052 EHMT1 SNP Silent 9 140622944 G A 33 55 BRCA BR-0052 SIGMAR1 SNP Missense_Mutation 9 34635654 G A 44 92 BRCA BR-0054 HIST2H2BE SNP Missense_Mutation 1 149857974 G C 38 100 BRCA BR-0054 IGSF9 SNP Silent 1 159906583 G A 41 58 BRCA BR-0054 CD59 SNP Splice_site 11 33743991 T C 52 67 BRCA BR-0054 TALDO1 SNP Missense_Mutation 11 764389 C T 23 71 BRCA BR-0054 ALG10B SNP Missense_Mutation 12 38714525 A C 1 63 BRCA BR-0054 NEO1 SNP Missense_Mutation 15 73590797 C T 26 81 BRCA BR-0054 KIF18B SNP Silent 17 43005756 G A 48 52 BRCA BR-0054 FSD1 SNP Missense_Mutation 19 4318904 G A 40 94 BRCA BR-0054 SH3RF3 SNP Silent 2 110015348 C T 23 38 BRCA BR-0054 CASP8 SNP Silent 2 202123029 C T 24 36 BRCA BR-0054 ITSN2 SNP Missense_Mutation 2 24432698 T C 52 85 BRCA BR-0054 SOS1 SNP Missense_Mutation 2 39278364 T C 51 76 BRCA BR-0054 CPZ SNP Silent 4 8605824 C T 19 50 BRCA BR-0054 DNAH5 SNP Silent 5 13919437 G A 34 59 BRCA BR-0054 CCNB1 SNP Splice_site 5 68463108 A G 7 55 BRCA BR-0054 NAPEPLD SNP Silent 7 102760248 G A 39 34 BRCA BR-0054 LOXL2 SNP Missense_Mutation 8 23225746 G A 39 99 BRCA BR-0054 CCIN SNP Silent 9 36170534 C T 24 47 BRCA BR-0060 S1PR1 SNP Missense_Mutation 1 101705100 C T 27 46 BRCA BR-0060 TAS1R3 SNP Silent 1 1267952 C T 18 55 BRCA BR-0060 SYT11 SNP Silent 1 155851143 C T 31 44 BRCA BR-0060 FGF8 SNP Missense_Mutation 10 103531244 G T 48 60 BRCA BR-0060 RET SNP Silent 10 43623573 G A 37 81 BRCA BR-0060 FAM21C SNP Silent 10 46280018 C T 27 49 BRCA BR-0060 RUFY2 SNP Missense_Mutation 10 70164505 C T 27 97 BRCA BR-0060 KIAA1274 SNP Silent 10 72300881 C T 22 50 BRCA BR-0060 ATM SNP Missense_Mutation 11 108201042 A G 16 88 BRCA BR-0060 OR5D18 SNP Missense_Mutation 11 55587541 G C 44 50 BRCA BR-0060 HNRNPA1 SNP Missense_Mutation 12 54675282 G A 48 93 BRCA BR-0060 CCT2 SNP Missense_Mutation 12 69991825 G C 41 97 BRCA BR-0060 BEST3 SNP Silent 12 70049505 G T 38 49 BRCA BR-0060 ATP11A SNP Silent 13 113514699 C T 19 47 BRCA BR-0060 RNASE4 SNP Missense_Mutation 14 21167826 G T 46 79 BRCA BR-0060 KIAA0317 SNP Missense_Mutation 14 75136426 G A 35 86 BRCA BR-0060 OTUD7A SNP Missense_Mutation 15 31776486 C T 27 50 BRCA BR-0060 RYR3 SNP Missense_Mutation 15 34065792 C T 19 89 BRCA BR-0060 DUOX2 SNP Silent 15 45398790 G A 48 74 BRCA BR-0060 ZNF592 SNP Missense_Mutation 15 85341572 T A 51 72 BRCA BR-0060 MEFV SNP Missense_Mutation 16 3304268 G C 48 45 BRCA BR-0060 GAS2L2 SNP Missense_Mutation 17 34074081 G A 40 44 BRCA BR-0060 CDK12 SNP Missense_Mutation 17 37650909 C G 17 97 BRCA BR-0060 ERBB2 SNP Missense_Mutation 17 37884131 G T 41 52 BRCA BR-0060 BZRAP1 SNP Silent 17 56387418 C T 24 48 BRCA BR-0060 BZRAP1 SNP Silent 17 56388506 C T 24 61 BRCA BR-0060 BZRAP1 SNP Missense_Mutation 17 56389075 C T 29 83 BRCA BR-0060 BZRAP1 SNP Silent 17 56389296 C T 21 35 BRCA BR-0060 BZRAP1 SNP Missense_Mutation 17 56389582 C T 28 64 BRCA BR-0060 BZRAP1 SNP Silent 17 56389701 C G 29 61 BRCA BR-0060 BZRAP1 SNP Silent 17 56404143 C T 29 66 BRCA BR-0060 CCDC45 SNP Silent 17 62518977 C T 23 33 BRCA BR-0060 ACADVL SNP Splice_site 17 7126452 G A 44 76 BRCA BR-0060 MGAT5B SNP Splice_site 17 74922812 C T 31 93 BRCA BR-0060 TP53 SNP Missense_Mutation 17 7577565 T C 60 86 BRCA BR-0060 SLC39A6 SNP Missense_Mutation 18 33689582 T C 61 67 BRCA BR-0060 CDH20 SNP Silent 18 59158014 C T 18 41 BRCA BR-0060 CTCFL SNP Missense_Mutation 20 56098735 G T 36 43 BRCA BR-0060 NFKBIZ SNP Silent 3 101576195 A G 4 68 BRCA BR-0060 ACAD9 SNP Missense_Mutation 3 128627086 G A 38 66 BRCA BR-0060 PIK3R4 SNP Nonsense_Mutation 3 130422673 G A 37 100 BRCA BR-0060 IGSF10 SNP Silent 3 151164955 G A 46 48 BRCA BR-0060 SI SNP Splice_site 3 164697220 T C 53 68 BRCA BR-0060 CYP8B1 SNP Missense_Mutation 3 42916608 C T 19 48 BRCA BR-0060 ACTR8 SNP Silent 3 53911280 C T 31 44 BRCA BR-0060 METAP1 SNP Missense_Mutation 4 99982333 T A 51 52 BRCA BR-0060 AHRR SNP Missense_Mutation 5 354005 C T 23 51 BRCA BR-0060 SLC1A3 SNP Missense_Mutation 5 36671149 G T 36 83 BRCA BR-0060 LIFR SNP Nonsense_Mutation 5 38504116 C A 29 55 BRCA BR-0060 SYTL3 SNP Silent 6 159129390 C A 29 56 BRCA BR-0060 OR2B6 SNP Missense_Mutation 6 27925130 A G 10 60 BRCA BR-0060 GIMAP7 SNP Missense_Mutation 7 150217127 G T 36 75 BRCA BR-0060 IL6 SNP Silent 7 22769321 C T 17 42 BRCA BR-0060 UBR5 SNP Missense_Mutation 8 103301757 C T 24 100 BRCA BR-0060 ROD1 SNP Silent 9 115038286 C T 30 81 BRCA BR-0060 DAB2IP SNP Missense_Mutation 9 124535071 G A 38 73 BRCA BR-0060 UNC13B SNP Silent 9 35396859 A G 14 50 BRCA BR-0060 GBA2 SNP Missense_Mutation 9 35739736 C T 24 88 BRCA BR-0064 H2AFX SNP Missense_Mutation 11 118965936 C G 30 100 BRCA BR-0064 MLL2 SNP Silent 12 49435483 C T 24 84 BRCA BR-0064 SV2B SNP Missense_Mutation 15 91769693 C T 27 84 BRCA BR-0064 IL1R2 SNP Missense_Mutation 2 102641126 C T 19 54 BRCA BR-0064 CHD6 SNP Nonsense_Mutation 20 40141556 C A 30 97 BRCA BR-0064 CPT1B SNP Missense_Mutation 22 51015039 G C 46 52 BRCA BR-0064 PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA BR-0064 OR2B6 SNP Missense_Mutation 6 27925131 C T 18 62 BRCA BR-0064 COL12A1 SNP Nonsense_Mutation 6 75799829 G A 40 59 BRCA BR-0064 ANLN SNP Missense_Mutation 7 36462263 T C 52 66 BRCA BR-0067 BCL2L15 SNP Missense_Mutation 1 114429245 C T 21 57 BRCA BR-0067 NPR1 SNP Missense_Mutation 1 153658326 C A 30 60 BRCA BR-0067 ZNF672 SNP Missense_Mutation 1 249142481 G C 33 61 BRCA BR-0067 PUM1 SNP Silent 1 31437585 T A 55 55 BRCA BR-0067 GRIK3 SNP Missense_Mutation 1 37324849 C T 29 100 BRCA BR-0067 HIVEP3 SNP Silent 1 42048909 T C 52 50 BRCA BR-0067 NASP SNP Missense_Mutation 1 46083152 G C 33 57 BRCA BR-0067 NASP SNP Missense_Mutation 1 46083738 G C 33 78 BRCA BR-0067 TMED5 SNP Missense_Mutation 1 93645642 G T 43 56 BRCA BR-0067 ABCC2 SNP Silent 10 101572826 C T 31 48 BRCA BR-0067 PDZD7 SNP Missense_Mutation 10 102781680 C T 31 97 BRCA BR-0067 BAMBI SNP Silent 10 28970464 T C 59 38 BRCA BR-0067 ZNF438 SNP Missense_Mutation 10 31137545 C G 29 94 BRCA BR-0067 PCDH15 SNP Nonsense_Mutation 10 55568712 C A 32 72 BRCA BR-0067 ASCC1 SNP Missense_Mutation 10 73963212 G A 41 91 BRCA BR-0067 ABCC8 SNP Splice_site 11 17432063 C T 22 100 BRCA BR-0067 HARBI1 SNP Missense_Mutation 11 46625349 C T 29 81 BRCA BR-0067 OR51T1 SNP Silent 11 4903840 A G 1 34 BRCA BR-0067 OR52A5 SNP Missense_Mutation 11 5153772 G C 33 53 BRCA BR-0067 OR4C6 SNP Missense_Mutation 11 55432652 C G 29 42 BRCA BR-0067 OR5AP2 SNP Silent 11 56409820 G A 41 52 BRCA BR-0067 LRTOMT SNP Nonsense_Mutation 11 71806129 G T 33 65 BRCA BR-0067 GABARAPL1 SNP Silent 12 10374445 G A 41 65 BRCA BR-0067 ITPR2 SNP Missense_Mutation 12 26809303 G A 41 98 BRCA BR-0067 NTF3 SNP Silent 12 5603830 G A 39 39 BRCA BR-0067 ENO2 SNP Splice_site 12 7026269 A T 1 89 BRCA BR-0067 PCCA SNP Silent 13 101020795 C A 23 53 BRCA BR-0067 ZMYM2 SNP Missense_Mutation 13 20641120 C T 20 58 BRCA BR-0067 GJB2 SNP Nonsense_Mutation 13 20763420 C A 29 72 BRCA BR-0067 SACS SNP Nonsense_Mutation 13 23904832 G A 45 77 BRCA BR-0067 FRY SNP Missense_Mutation 13 32705914 G A 45 71 BRCA BR-0067 PCDH9 SNP Nonsense_Mutation 13 67799680 G A 45 98 BRCA BR-0067 TRAF3 SNP Missense_Mutation 14 103363713 A G 4 69 BRCA BR-0067 ADCY4 SNP Silent 14 24793543 G T 41 50 BRCA BR-0069 NES SNP Missense_Mutation 1 156641413 T C 52 58 BRCA BR-0069 PTPRU SNP Missense_Mutation 1 29639167 G A 38 95 BRCA BR-0069 AGRN SNP Missense_Mutation 1 981139 G A 40 83 BRCA BR-0069 SYNPO2L SNP Nonsense_Mutation 10 75406541 G A 39 52 BRCA BR-0069 ST5 SNP Missense_Mutation 11 8732430 C A 32 99 BRCA BR-0069 C3orf23 SNP Splice_Site 3 44448932 A T 15 87 BRCA BR-0069 CHDH SNP Missense_Mutation 3 53852060 T C 57 93 BRCA BR-0069 ENAM SNP Missense_Mutation 4 71509280 G A 41 55 BRCA BR-0069 GLO1 SNP Missense_Mutation 6 38650632 C G 29 85 BRCA BR-0069 TNFRSF21 SNP Missense_Mutation 6 47254058 C G 25 58 BRCA BR-0070 FAM58B SNP Missense_Mutation 1 200182899 G A 38 55 BRCA BR-0070 RYR2 SNP Missense_Mutation 1 237754054 A T 12 61 BRCA BR-0070 NLRP3 SNP Silent 1 247588380 C T 19 49 BRCA BR-0070 XPNPEP1 SNP Missense_Mutation 10 111667465 G A 37 91 BRCA BR-0070 OR51G1 SNP Missense_Mutation 11 4945188 C T 19 73 BRCA BR-0070 MPG SNP Missense_Mutation 16 135414 G A 40 64 BRCA BR-0070 MLLT6 SNP Nonsense_Mutation 17 36872670 C T 25 73 BRCA BR-0070 MLLT6 SNP Silent 17 36876045 C T 24 48 BRCA BR-0070 MLLT6 SNP Nonsense_Mutation 17 36876657 C T 25 89 BRCA BR-0070 TUBD1 SNP Missense_Mutation 17 57955634 G A 42 97 BRCA BR-0070 DNAH2 SNP Missense_Mutation 17 7734097 G A 38 99 BRCA BR-0070 GAPDHS SNP Missense_Mutation 19 36035835 G A 45 53 BRCA BR-0070 RSPH6A SNP Missense_Mutation 19 46313890 C T 29 74 BRCA BR-0070 TTYH1 SNP Silent 19 54930430 C G 23 34 BRCA BR-0070 GRB14 SNP Missense_Mutation 2 165365281 C T 28 96 BRCA BR-0070 BMPR2 SNP Missense_Mutation 2 203397365 G A 41 100 BRCA BR-0070 C2orf85 SNP Silent 2 242814742 C T 29 50 BRCA BR-0070 HEATR5B SNP Missense_Mutation 2 37287828 C T 31 99 BRCA BR-0070 PHEX SNP Missense_Mutation 23 22117215 G A 38 88 BRCA BR-0070 OR2A12 SNP Missense_Mutation 7 143792864 G A 44 21 BRCA BR-0070 EGFR SNP Silent 7 55266531 C T 31 47 BRCA BR-0071 PLK3 SNP Missense_Mutation 1 45269024 G A 46 56 BRCA BR-0071 PLEKHN1 SNP Missense_Mutation 1 909831 C T 30 57 BRCA BR-0071 ATRNL1 SNP Silent 10 117093856 C G 29 49 BRCA BR-0071 ZDHHC13 SNP Silent 11 19170755 C T 29 60 BRCA BR-0071 EPS8L2 SNP Missense_Mutation 11 726346 G A 39 50 BRCA BR-0071 RFX4 SNP Missense_Mutation 12 107125925 C G 29 100 BRCA BR-0071 AQP6 SNP Missense_Mutation 12 50367119 G A 40 55 BRCA BR-0071 APAF1 SNP Missense_Mutation 12 99117517 C T 32 86 BRCA BR-0071 SPG20 SNP Missense_Mutation 13 36909281 C A 32 85 BRCA BR-0071 PPP2R5C SNP Silent 14 102368178 A G 2 55 BRCA BR-0071 NID2 SNP Missense_Mutation 14 52493940 C T 23 65 BRCA BR-0071 SERPINA10 SNP Missense_Mutation 14 94756382 C G 32 62 BRCA BR-0071 ZNF423 SNP Missense_Mutation 16 49672480 G C 45 66 BRCA BR-0071 MON1B SNP Missense_Mutation 16 77228604 G A 37 60 BRCA BR-0071 RHBDL3 SNP Splice_Site 17 30632358 A G 15 90 BRCA BR-0071 SLFN13 SNP Missense_Mutation 17 33769276 C G 32 50 BRCA BR-0071 TP53 SNP Splice_Site 17 7577610 T C 53 82 BRCA BR-0071 ZNF404 SNP Missense_Mutation 19 44377263 G C 33 44 BRCA BR-0071 ZNF331 SNP Silent 19 54080435 G A 41 48 BRCA BR-0071 LILRA1 SNP Splice_site 19 55112281 G A 45 47 BRCA BR-0071 ZNF264 SNP Missense_Mutation 19 57716815 G C 41 50 BRCA BR-0071 STK25 SNP Missense_Mutation 2 242438069 G C 33 100 BRCA BR-0071 FOXN2 SNP Missense_Mutation 2 48602253 C G 24 54 BRCA BR-0071 NAA20 SNP Nonsense_Mutation 20 20007538 G T 41 97 BRCA BR-0071 C20orf132 SNP Silent 20 35748155 G C 33 53 BRCA BR-0071 NKAP SNP Missense_Mutation 23 119072707 C G 32 54 BRCA BR-0071 PIK3CA SNP Splice_site 3 178917478 G A 44 99 BRCA BR-0071 PPP4R2 SNP Missense_Mutation 3 73114064 G C 33 72 BRCA BR-0071 HTT SNP Silent 4 3230365 G A 47 50 BRCA BR-0071 PTPN13 SNP Missense_Mutation 4 87683900 C G 32 50 BRCA BR-0071 HEATR7B2 SNP Missense_Mutation 5 41052612 C G 29 50 BRCA BR-0071 ZFYVE16 SNP Missense_Mutation 5 79744206 C G 32 69 BRCA BR-0071 PCSK1 SNP Missense_Mutation 5 95765014 G A 45 97 BRCA BR-0071 DAGLB SNP Missense_Mutation 7 6472552 G A 37 48 BRCA BR-0071 BHLHA15 SNP Missense_Mutation 7 97841881 G A 39 83 BRCA BR-0071 SYBU SNP Missense_Mutation 8 110598341 G A 41 75 BRCA BR-MEX-005 SPEN SNP Missense_Mutation 1 16261553 C A 22 69 BRCA BR-MEX-005 CACNA1E SNP Missense_Mutation 1 181721292 C T 19 70 BRCA BR-MEX-005 UBR4 SNP Missense_Mutation 1 19427001 G T 48 95 BRCA BR-MEX-005 ZDHHC13 SNP Missense_Mutation 11 19167843 C A 32 76 BRCA BR-MEX-005 PRMT3 SNP Missense_Mutation 11 20411348 A G 16 61 BRCA BR-MEX-005 OR52E4 SNP Missense_Mutation 11 5905893 G A 38 69 BRCA BR-MEX-005 ACTN3 SNP Missense_Mutation 11 66318756 A C 7 74 BRCA BR-MEX-005 UBC SNP Missense_Mutation 12 125398067 A T 11 86 BRCA BR-MEX-005 GRIN2B SNP Missense_Mutation 12 13716216 G A 39 95 BRCA BR-MEX-005 TP53 SNP Missense_Mutation 17 7577515 T G 59 73 BRCA BR-MEX-005 CEACAM8 SNP Missense_Mutation 19 43093650 G A 38 50 BRCA BR-MEX-005 TTN SNP Silent 2 179413008 A G 11 54 BRCA BR-MEX-005 NCOA1 SNP Silent 2 24914381 A G 6 63 BRCA BR-MEX-005 STAG2 SNP Missense_Mutation 23 123202482 C A 19 51 BRCA BR-MEX-005 RAPGEF2 SNP Silent 4 160273949 C A 32 50 BRCA BR-MEX-005 FLT4 SNP Missense_Mutation 5 180057229 C T 27 51 BRCA BR-MEX-005 GSDMC SNP Missense_Mutation 8 130760796 G A 33 50 BRCA BR-MEX-005 CPSF1 SNP Missense_Mutation 8 145634533 C T 19 94 BRCA BR-MEX-005 RNF183 SNP Missense_Mutation 9 116060430 T C 54 82 BRCA BR-MEX-015 KIF1B SNP Missense 1 10342429 G C 33 77 BRCA BR-MEX-015 ARV1 SNP Synonymous 1 231125870 C G 32 64 BRCA BR-MEX-015 SRRM1 SNP Missense 1 24972545 C T 25 100 BRCA BR-MEX-015 MACF1 SNP Nonsense 1 39801261 C T 29 69 BRCA BR-MEX-015 LRRC8C SNP Missense 1 90180510 C T 32 80 BRCA BR-MEX-015 A1CF SNP Splice_site 10 52566490 C T 29 63 BRCA BR-MEX-015 AHNAK SNP Missense 11 62299819 C A 29 52 BRCA BR-MEX-015 NARS2 SNP Missense 11 78189672 C T 32 76 BRCA BR-MEX-015 NARS2 SNP Missense 11 78189697 C T 29 65 BRCA BR-MEX-015 SNRNP35 SNP Missense 12 123950593 C T 21 69 BRCA BR-MEX-015 PIK3C2G SNP Missense 12 18491472 G A 33 62 BRCA BR-MEX-015 KCNJ8 SNP Missense 12 21918986 C T 29 100 BRCA BR-MEX-015 KIAA0564 SNP Missense 13 42361594 G A 42 54 BRCA BR-MEX-015 PYGO1 SNP Missense 15 55838359 C T 29 96 BRCA BR-MEX-015 ZNF689 SNP Missense 16 30615345 C A 17 29 BRCA BR-MEX-015 MED24 SNP Missense 17 38183275 C G 31 97 BRCA BR-MEX-015 MAP2K6 SNP Synonymous 17 67521065 C T 29 66 BRCA BR-MEX-015 ZNF230 SNP Synonymous 19 44514638 C T 29 50 BRCA BR-MEX-015 ZNF417 SNP Nonsense 19 58420703 G A 45 50 BRCA BR-MEX-015 RANBP2 SNP Missense 2 109374915 C A 24 92 BRCA BR-MEX-015 EPC2 SNP Synonymous 2 149542457 C T 29 78 BRCA BR-MEX-015 CASP8 SNP Missense 2 202139642 C T 31 49 BRCA BR-MEX-015 COL4A4 SNP Missense 2 227973329 C T 23 75 BRCA BR-MEX-015 XBP1 DEL De_novo_Start_InFrame 22 29192324 ATT - 8 44 BRCA BR-MEX-015 TAB1 SNP Nonsense 22 39811110 G T 45 79 BRCA BR-MEX-015 DGKK SNP Missense 23 50163410 T G 64 68 BRCA BR-MEX-015 ACRC SNP Missense 23 70823870 G A 34 39 BRCA BR-MEX-015 ACPP SNP Synonymous 3 132036318 C T 30 37 BRCA BR-MEX-015 CLSTN2 SNP Splice_Site_SNP 3 140251165 G C 33 98 BRCA BR-MEX-015 LRRC31 SNP Synonymous 3 169574496 G A 33 51 BRCA BR-MEX-015 ARPP21 SNP Missense 3 35748488 C T 17 95 BRCA BR-MEX-015 DNAH1 SNP Missense 3 52379522 G T 48 53 BRCA BR-MEX-015 PRDM9 SNP Missense 5 23527491 G C 33 17 BRCA BR-MEX-015 PAIP1 SNP Nonsense 5 43537004 G A 45 92 BRCA BR-MEX-015 ZDHHC11 SNP Missense 5 840399 G T 41 49 BRCA BR-MEX-015 TFAP2A SNP Missense 6 10407010 G A 33 62 BRCA BR-MEX-015 EXOC2 SNP Synonymous 6 564640 G A 45 54 BRCA BR-MEX-015 DGKI SNP Missense 7 137304653 G A 45 100 BRCA BR-MEX-015 NCAPG2 SNP Missense 7 158478927 C A 29 82 BRCA BR-MEX-015 PCLO SNP Nonsense 7 82764222 G A 40 61 BRCA BR-MEX-015 PON2 SNP Missense 7 95035457 C A 29 79 BRCA BR-MEX-015 RAD54B SNP Synonymous 8 95390574 G T 45 62 BRCA BR-MEX-015 TDRD7 SNP Missense 9 100237721 C G 30 58 BRCA BR-MEX-015 ROR2 SNP Missense 9 94484855 C A 24 68 BRCA BR-MEX-026 C1orf227 SNP Silent 1 213009360 C T 29 51 BRCA BR-MEX-026 CAPN9 SNP Missense_Mutation 1 230915973 A G 12 91 BRCA BR-MEX-026 PRDM16 SNP Missense_Mutation 1 3328200 A T 6 88 BRCA BR-MEX-026 C10orf90 SNP Missense_Mutation 10 128193578 C T 32 39 BRCA BR-MEX-026 MMP8 SNP Nonstop_Mutation 11 102584518 C G 32 50 BRCA BR-MEX-026 PYGM SNP Silent 11 64523010 G A 40 46 BRCA BR-MEX-026 ANO4 SNP Splice_site 12 101365182 C T 29 80 BRCA BR-MEX-026 CGRRF1 SNP Splice_site 14 54997766 A G 16 90 BRCA BR-MEX-026 ISLR SNP Silent 15 74468342 G A 39 9 BRCA BR-MEX-026 AP1G1 SNP Nonsense_Mutation 16 71782173 G A 37 53 BRCA BR-MEX-026 CHST6 SNP Missense_Mutation 16 75512639 G A 33 63 BRCA BR-MEX-026 NOL4 SNP Missense_Mutation 18 31599403 G C 33 85 BRCA BR-MEX-026 REV1 SNP Missense_Mutation 2 100022484 G A 44 86 BRCA BR-MEX-026 AGPAT3 SNP Silent 21 45379676 C G 32 54 BRCA BR-MEX-026 MAGT1 SNP Silent 23 77131044 T C 58 48 BRCA BR-MEX-026 GPR149 SNP Missense_Mutation 3 154055964 C T 29 98 BRCA BR-MEX-026 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA BR-MEX-026 TBC1D9 SNP Missense_Mutation 4 141600319 C G 29 100 BRCA BR-MEX-026 TRIML2 SNP Silent 4 189022267 C T 29 52 BRCA BR-MEX-026 MED23 SNP Splice_site 6 131917089 T A 51 93 BRCA BR-MEX-026 OGN SNP Missense_Mutation 9 95163440 C T 29 49 BRCA BR-MEX-027 AMPD2 SNP Missense_Mutation 1 110172499 G A 46 96 BRCA BR-MEX-027 OR10J1 SNP Silent 1 159409725 C T 29 50 BRCA BR-MEX-027 PAPPA2 SNP Missense_Mutation 1 176525622 A C 3 42 BRCA BR-MEX-027 LUZP1 SNP Missense_Mutation 1 23418221 G A 41 93 BRCA BR-MEX-027 FAM54B SNP Missense_Mutation 1 26156239 G A 40 52 BRCA BR-MEX-027 PLK3 SNP Missense_Mutation 1 45270103 C G 29 83 BRCA BR-MEX-027 BICC1 SNP Missense_Mutation 10 60558897 C G 18 65 BRCA BR-MEX-027 CPEB3 SNP Missense_Mutation 10 93811989 C G 19 79 BRCA BR-MEX-027 ENTPD1 SNP Missense_Mutation 10 97605121 G A 35 49 BRCA BR-MEX-027 UTP20 SNP Missense_Mutation 12 101723079 C T 24 100 BRCA BR-MEX-027 KIF21A SNP Missense_Mutation 12 39760225 C A 30 98 BRCA BR-MEX-027 KRT79 SNP Missense_Mutation 12 53227629 C T 27 96 BRCA BR-MEX-027 C3AR1 SNP Missense_Mutation 12 8212211 G T 41 53 BRCA BR-MEX-027 HECTD1 SNP Missense_Mutation 14 31613328 C A 17 100 BRCA BR-MEX-027 SDCCAG1 SNP Missense_Mutation 14 50272747 G A 47 99 BRCA BR-MEX-027 C14orf101 SNP Missense_Mutation 14 57114130 A T 4 60 BRCA BR-MEX-027 DCAF5 SNP Silent 14 69619585 G A 42 59 BRCA BR-MEX-027 GNB5 SNP Silent 15 52442105 C T 17 57 BRCA BR-MEX-027 GSG1L SNP Missense_Mutation 16 27895935 G A 41 98 BRCA BR-MEX-027 CWC25 SNP Missense_Mutation 17 36963097 T A 54 53 BRCA BR-MEX-027 BRCA1 SNP Missense_Mutation 17 41245272 T A 63 58 BRCA BR-MEX-027 ITGA2B SNP Missense_Mutation 17 42449739 C A 22 56 BRCA BR-MEX-027 DNAH17 SNP Silent 17 76446863 C T 21 65 BRCA BR-MEX-027 TYK2 SNP Silent 19 10479078 G A 34 51 BRCA BR-MEX-027 USHBP1 SNP Missense_Mutation 19 17373585 G A 42 54 BRCA BR-MEX-027 INSR SNP Missense_Mutation 19 7166380 T A 50 87 BRCA BR-MEX-027 ZSWIM2 SNP Missense_Mutation 2 187693087 G A 47 64 BRCA BR-MEX-027 OBSL1 SNP Missense_Mutation 2 220424048 G A 47 52 BRCA BR-MEX-027 C2orf63 SNP Silent 2 55408843 G T 33 45 BRCA BR-MEX-027 SLC13A3 SNP Silent 20 45224876 G A 41 67 BRCA BR-MEX-027 BACE2 SNP Silent 21 42613796 C T 17 43 BRCA BR-MEX-027 MID1 SNP Silent 23 10427795 G A 44 70 BRCA BR-MEX-027 ARHGAP6 SNP Silent 23 11162146 C T 19 49 BRCA BR-MEX-027 IL13RA1 SNP Nonsense_Mutation 23 117883685 T A 60 47 BRCA BR-MEX-027 DYNLT3 SNP Missense_Mutation 23 37700346 A T 6 82 BRCA BR-MEX-027 WNK3 SNP Missense_Mutation 23 54259425 T A 60 63 BRCA BR-MEX-027 FOXO4 SNP Missense_Mutation 23 70321548 C T 24 82 BRCA BR-MEX-027 GAP43 SNP Splice_Site 3 115342568 T A 57 83 BRCA BR-MEX-027 IGSF10 SNP Missense_Mutation 3 151164006 G T 36 51 BRCA BR-MEX-027 ALS2CL SNP Missense_Mutation 3 46722021 A G 15 80 BRCA BR-MEX-027 OTOP1 SNP Missense_Mutation 4 4199681 G A 38 80 BRCA BR-MEX-027 RAD50 SNP Missense_Mutation 5 131945050 G C 33 96 BRCA BR-MEX-027 PREP SNP Silent 6 105821338 C G 25 52 BRCA BR-MEX-027 HIST1H1A SNP Silent 6 26017511 G C 45 45 BRCA BR-MEX-027 ITPR3 SNP Missense_Mutation 6 33608316 C A 22 82 BRCA BR-MEX-027 CPA4 SNP Missense_Mutation 7 129951945 C T 22 80 BRCA BR-MEX-027 PRPS1L1 SNP Missense_Mutation 7 18067240 C T 19 52 BRCA BR-MEX-027 EGFR SNP Missense_Mutation 7 55211072 G T 33 55 BRCA BR-MEX-027 FSCN1 SNP Nonsense_Mutation 7 5642908 C T 29 82 BRCA BR-MEX-027 KCNV1 SNP Missense_Mutation 8 110980822 C T 27 70 BRCA BR-MEX-027 LZTS1 SNP Missense_Mutation 8 20112612 C A 20 51 BRCA BR-MEX-027 OR13C3 SNP Missense_Mutation 9 107298106 T A 52 55 BRCA BR-MEX-027 FAM129B SNP Missense_Mutation 9 130279150 G A 42 69 BRCA BR-MEX-027 ARID3C SNP Missense_Mutation 9 34622361 C T 26 56 BRCA BR-MEX-028 KIAA0467 SNP Missense_Mutation 1 43904393 G A 40 77 BRCA BR-MEX-028 FADS3 SNP Missense_Mutation 11 61646061 C T 27 79 BRCA BR-MEX-028 OAS2 SNP Splice_site 12 113440906 G A 39 50 BRCA BR-MEX-028 NACA SNP Missense_Mutation 12 57114467 G A 33 25 BRCA BR-MEX-028 PRM1 SNP Splice_site 16 11374891 C T 18 59 BRCA BR-MEX-028 ACSM2B SNP Splice_site 16 20554459 G A 38 32 BRCA BR-MEX-028 KRT9 SNP Splice_site 17 39727603 C G 24 76 BRCA BR-MEX-028 ANKRD40 SNP Missense_Mutation 17 48784955 C T 24 92 BRCA BR-MEX-028 CCDC47 SNP Missense_Mutation 17 61843397 C T 30 93 BRCA BR-MEX-028 SEC14L1 SNP Missense_Mutation 17 75190903 G A 40 50 BRCA BR-MEX-028 ? SNP Missense_Mutation 17 78291022 C T 27 0 BRCA BR-MEX-028 IL27RA SNP Missense_Mutation 19 14160024 G A 38 51 BRCA BR-MEX-028 NLRP4 SNP Missense_Mutation 19 56388508 C T 19 70 BRCA BR-MEX-028 KIF1A SNP Missense_Mutation 2 241706335 C T 31 65 BRCA BR-MEX-028 ZFP64 SNP Missense_Mutation 20 50803488 T A 58 56 BRCA BR-MEX-028 IGSF11 SNP Missense_Mutation 3 118645007 G T 47 96 BRCA BR-MEX-028 PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA BR-MEX-028 PDS5A SNP Missense_Mutation 4 39874689 T C 49 79 BRCA BR-MEX-028 AASDH SNP Silent 4 57221362 A G 13 55 BRCA BR-MEX-028 JAKMIP1 SNP Missense_Mutation 4 6062186 C T 31 78 BRCA BR-MEX-028 KIF3A SNP Silent 5 132032350 A T 7 57 BRCA BR-MEX-028 DDX46 SNP Splice_site 5 134164394 T C 49 90 BRCA BR-MEX-028 MCCC2 SNP Silent 5 70895492 A G 8 38 BRCA BR-MEX-028 ZCCHC6 SNP Missense_Mutation 9 88938810 G C 36 68 BRCA BR-MEX-030 RIT1 SNP Missense_Mutation 1 155870291 C T 19 94 BRCA BR-MEX-030 FCRL5 SNP Missense_Mutation 1 157514812 C A 25 76 BRCA BR-MEX-030 FAM35A SNP Missense_Mutation 10 88950316 C T 24 59 BRCA BR-MEX-030 WEE1 SNP Missense_Mutation 11 9608033 T G 56 91 BRCA BR-MEX-030 WDR76 SNP Missense_Mutation 15 44143356 C G 32 50 BRCA BR-MEX-030 HMG20A SNP Missense_Mutation 15 77756589 C T 29 80 BRCA BR-MEX-030 CES2 SNP Silent 16 66972013 C T 27 51 BRCA BR-MEX-030 STAT5B SNP Missense_Mutation 17 40370747 A C 6 89 BRCA BR-MEX-030 MYCBPAP SNP Silent 17 48586026 G C 39 50 BRCA BR-MEX-030 TTR SNP Missense_Mutation 18 29175168 A G 5 62 BRCA BR-MEX-030 RALBP1 SNP Missense_Mutation 18 9522323 C T 28 97 BRCA BR-MEX-030 UNC13A SNP Missense_Mutation 19 17780482 C T 22 94 BRCA BR-MEX-030 DYRK1B SNP Missense_Mutation 19 40320595 G C 35 65 BRCA BR-MEX-030 SATB2 SNP Silent 2 200246479 C A 31 35 BRCA BR-MEX-030 VWA3B SNP Silent 2 98928746 C A 22 62 BRCA BR-MEX-030 GDF5 SNP Missense_Mutation 20 34025551 A G 7 52 BRCA BR-MEX-030 ALG13 SNP Missense_Mutation 23 110970869 G A 45 84 BRCA BR-MEX-030 PLXNA3 SNP Missense_Mutation 23 153694750 G A 40 54 BRCA BR-MEX-030 PIK3CA SNP Missense_Mutation 3 178927980 T C 55 89 BRCA BR-MEX-030 SH3TC1 SNP Missense_Mutation 4 8230099 C A 28 68 BRCA BR-MEX-030 TIFAB SNP Missense_Mutation 5 134785391 C T 27 51 BRCA BR-MEX-030 EPHA7 SNP Missense_Mutation 6 93979212 G A 48 99 BRCA BR-MEX-030 TRPS1 SNP Silent 8 116632190 T C 62 55 BRCA BR-MEX-031 CAPN1 SNP Missense_Mutation 11 64950209 G T 47 81 BRCA BR-MEX-034 E2F8 SNP Missense_Mutation 11 19251115 G C 42 52 BRCA BR-MEX-034 CAPRIN1 SNP Missense_Mutation 11 34073992 G T 39 51 BRCA BR-MEX-034 OR4C13 SNP Silent 11 49974106 G T 47 51 BRCA BR-MEX-034 OR5AR1 SNP Silent 11 56431698 C T 27 52 BRCA BR-MEX-034 HAL SNP Missense_Mutation 12 96370416 G A 41 100 BRCA BR-MEX-034 PSMC6 SNP Silent 14 53180667 T C 60 55 BRCA BR-MEX-034 RHOJ SNP Silent 14 63735841 G T 47 67 BRCA BR-MEX-034 SEMA4B SNP Silent 15 90771833 C T 22 57 BRCA BR-MEX-034 LMF1 SNP Missense_Mutation 16 961031 C T 25 89 BRCA BR-MEX-034 ACACA SNP Silent 17 35591953 T C 57 51 BRCA BR-MEX-034 FMNL1 SNP Missense_Mutation 17 43311503 T C 58 79 BRCA BR-MEX-034 TP53 SNP Missense_Mutation 17 7578526 C A 25 97 BRCA BR-MEX-034 ZNF441 SNP Silent 19 11891791 A G 5 55 BRCA BR-MEX-034 GSS SNP Missense_Mutation 20 33519776 C T 27 88 BRCA BR-MEX-034 SOD1 SNP Missense_Mutation 21 33036151 G A 45 60 BRCA BR-MEX-034 DSCAM SNP Silent 21 41416135 G T 43 51 BRCA BR-MEX-034 WDR13 SNP Silent 23 48463378 C T 19 49 BRCA BR-MEX-034 ZC4H2 SNP Missense_Mutation 23 64139041 C T 30 94 BRCA BR-MEX-034 LSM3 SNP Missense_Mutation 3 14223083 G T 35 60 BRCA BR-MEX-034 SLC34A2 SNP Missense_Mutation 4 25678178 G A 38 77 BRCA BR-MEX-034 ESYT2 SNP Missense_Mutation 7 158529800 G A 38 54 BRCA BR-MEX-034 AMZ1 SNP Silent 7 2752047 G C 38 43 BRCA BR-MEX-034 GPR124 SNP Splice_Site 8 37692918 T A 59 90 BRCA BR-MEX-036 PLCH2 SNP Missense_Mutation 1 2430588 C T 23 97 BRCA BR-MEX-036 NPAS4 SNP Missense_Mutation 11 66190373 G A 38 57 BRCA BR-MEX-036 KRT82 SNP Missense_Mutation 12 52799970 T C 49 56 BRCA BR-MEX-036 DCAF11 SNP Missense_Mutation 14 24588419 G A 41 95 BRCA BR-MEX-036 CHST5 SNP Silent 16 75564028 G A 44 67 BRCA BR-MEX-036 BRIP1 SNP Missense_Mutation 17 59760829 G A 48 50 BRCA BR-MEX-036 PGS1 SNP Silent 17 76395565 C T 31 41 BRCA BR-MEX-036 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA BR-MEX-036 KIF9 SNP Missense_Mutation 3 47315055 C T 19 87 BRCA BR-MEX-036 PACRGL SNP Missense_Mutation 4 20706430 T C 52 80 BRCA BR-MEX-036 ESR1 SNP Missense_Mutation 6 152163751 C T 19 74 BRCA BR-MEX-036 TBXAS1 SNP Missense_Mutation 7 139706970 C T 23 75 BRCA BR-MEX-037 RPRD2 SNP Missense_Mutation 1 150445525 G C 33 55 BRCA BR-MEX-037 DCST2 SNP Silent 1 155002594 G C 45 54 BRCA BR-MEX-037 HCN3 SNP Silent 1 155254449 C T 29 65 BRCA BR-MEX-037 ATP1A2 SNP Missense_Mutation 1 160100018 G C 41 95 BRCA BR-MEX-037 METTL13 SNP Nonsense_Mutation 1 171755024 C T 29 93 BRCA BR-MEX-037 STX6 SNP Missense_Mutation 1 180959152 G C 45 70 BRCA BR-MEX-037 LAMB3 SNP Missense_Mutation 1 209803245 C G 32 54 BRCA BR-MEX-037 KIF17 SNP Missense_Mutation 1 20998666 G C 45 81 BRCA BR-MEX-037 SERTAD4 SNP Missense_Mutation 1 210415536 G C 45 87 BRCA BR-MEX-037 RYR2 SNP Missense_Mutation 1 237550635 C T 32 73 BRCA BR-MEX-037 SCCPDH SNP Missense_Mutation 1 246927584 C G 29 73 BRCA BR-MEX-037 HNRNPH3 SNP Missense_Mutation 10 70101534 G C 41 93 BRCA BR-MEX-037 CSRP3 SNP Missense_Mutation 11 19209717 C T 32 100 BRCA BR-MEX-037 SLC17A6 SNP Missense_Mutation 11 22397570 C G 32 100 BRCA BR-MEX-037 OR5B12 SNP Missense_Mutation 11 58206901 G A 47 94 BRCA BR-MEX-037 TAS2R43 SNP Nonsense_Mutation 12 11243954 G T 45 49 BRCA BR-MEX-037 GPR162 SNP Missense_Mutation 12 6933613 C A 29 56 BRCA BR-MEX-037 MIPEP SNP Nonsense_Mutation 13 24304576 G A 45 70 BRCA BR-MEX-037 GPR12 SNP Missense_Mutation 13 27333054 C G 32 100 BRCA BR-MEX-037 RBM25 SNP Missense_Mutation 14 73554715 G C 41 100 BRCA BR-MEX-037 ACCN1 SNP Missense_Mutation 17 31350913 C G 29 35 BRCA BR-MEX-037 CCL3 SNP Splice_site 17 34417331 C T 19 77 BRCA BR-MEX-037 GGNBP2 SNP Nonsense_Mutation 17 34910706 C T 29 84 BRCA BR-MEX-037 KRT32 SNP Missense_Mutation 17 39622383 C G 29 93 BRCA BR-MEX-037 EFCAB3 SNP Missense_Mutation 17 60470983 G C 33 55 BRCA BR-MEX-037 LAMA3 SNP Silent 18 21487802 C G 29 50 BRCA BR-MEX-037 YES1 SNP Nonsense_Mutation 18 742923 G C 45 77 BRCA BR-MEX-037 MBP SNP Missense_Mutation 18 74696844 C T 31 76 BRCA BR-MEX-037 ZNF136 SNP Missense_Mutation 19 12296721 C G 32 50 BRCA BR-MEX-037 SLC1A6 SNP Missense_Mutation 19 15064961 C G 32 70 BRCA BR-MEX-037 CD22 SNP Silent 19 35822955 C T 31 36 BRCA BR-MEX-037 ZNF233 SNP Missense_Mutation 19 44777746 G C 33 56 BRCA BR-MEX-037 KLK10 SNP Silent 19 51522333 C T 31 56 BRCA BR-MEX-037 ZNF544 SNP Silent 19 58773466 G T 41 47 BRCA BR-MEX-037 SNAPC2 SNP Missense_Mutation 19 7987166 G C 45 78 BRCA BR-MEX-037 TTN SNP Missense_Mutation 2 179469836 C T 31 100 BRCA BR-MEX-037 ADAM23 SNP Nonsense_Mutation 2 207431970 C G 29 99 BRCA BR-MEX-037 MAP2 SNP Missense_Mutation 2 210558269 G C 33 67 BRCA BR-MEX-037 ATG9A SNP Missense_Mutation 2 220089405 G C 33 62 BRCA BR-MEX-037 NEU2 SNP Missense_Mutation 2 233897569 C T 18 58 BRCA BR-MEX-037 HJURP SNP Missense_Mutation 2 234750393 C G 32 50 BRCA BR-MEX-037 HDLBP SNP Missense_Mutation 2 242194803 C T 29 80 BRCA BR-MEX-037 KDM3A SNP Nonsense_Mutation 2 86718345 C T 29 97 BRCA BR-MEX-037 SH3BGR SNP Missense_Mutation 21 40824051 C G 32 82 BRCA BR-MEX-037 GLRA4 SNP Missense_Mutation 23 102968532 C G 25 61 BRCA BR-MEX-037 SLC38A5 SNP Silent 23 48325354 G A 33 54 BRCA BR-MEX-037 IRAK2 SNP Missense_Mutation 3 10255228 C G 32 56 BRCA BR-MEX-037 BOC SNP Missense_Mutation 3 112997020 G C 45 81 BRCA BR-MEX-037 TF SNP Missense_Mutation 3 133494324 G C 45 37 BRCA BR-MEX-037 RNF13 SNP Silent 3 149677901 C G 29 50 BRCA BR-MEX-037 FOXP1 SNP Splice_Site 3 71021828 C G 32 100 BRCA BR-MEX-037 TLR3 SNP Missense_Mutation 4 187004333 C G 32 77 BRCA BR-MEX-037 PCDHB9 SNP Missense_Mutation 5 140567907 G C 33 92 BRCA BR-MEX-037 DHX29 SNP Missense_Mutation 5 54579455 C G 32 44 BRCA BR-MEX-037 MAST4 SNP Missense_Mutation 5 66438320 G C 41 88 BRCA BR-MEX-037 HIST1H2BG SNP Missense_Mutation 6 26216643 C T 31 91 BRCA BR-MEX-037 ZKSCAN3 SNP Silent 6 28333912 C T 29 53 BRCA BR-MEX-037 ZNF311 SNP Missense_Mutation 6 28963998 C G 32 50 BRCA BR-MEX-037 MAS1L SNP Missense_Mutation 6 29454917 G C 47 33 BRCA BR-MEX-037 DST SNP Silent 6 56426232 C T 24 56 BRCA BR-MEX-037 MGAM SNP Missense_Mutation 7 141758104 G C 33 37 BRCA BR-MEX-037 POU6F2 SNP Silent 7 39125507 G C 41 62 BRCA BR-MEX-037 PKHD1L1 SNP Missense_Mutation 8 110477277 C G 32 98 BRCA BR-MEX-037 TRPS1 SNP Silent 8 116599489 C T 25 44 BRCA BR-MEX-037 PLEC SNP Missense_Mutation 8 144995121 G C 45 65 BRCA BR-MEX-037 RAB11FIP1 SNP De_novo_Start_OutOfFrame 8 37756966 G C 37 51 BRCA BR-MEX-037 ADAM18 SNP Silent 8 39581322 G C 45 53 BRCA BR-MEX-037 POTEA SNP Missense_Mutation 8 43155721 T G 64 59 BRCA BR-MEX-037 RP1 SNP Missense_Mutation 8 55540317 C G 32 65 BRCA BR-MEX-037 DNAJC5B SNP Missense_Mutation 8 67012213 G C 45 78 BRCA BR-MEX-037 EYA1 SNP Splice_Site 8 72182059 C G 32 99 BRCA BR-MEX-037 PI15 SNP Missense_Mutation 8 75737530 C T 32 65 BRCA BR-MEX-037 FAM82B SNP Silent 8 87487130 C T 29 76 BRCA BR-MEX-037 SH3GL2 SNP Missense_Mutation 9 17791274 G C 41 87 BRCA BR-MEX-038 OR2L13 SNP Missense_Mutation 1 248262825 G A 40 16 BRCA BR-MEX-038 PRDM16 SNP Silent 1 3328795 C T 23 35 BRCA BR-MEX-038 Unknown SNP Silent 10 134664771 C T 27 48 BRCA BR-MEX-038 DNAH10 SNP Nonsense_Mutation 12 124270433 G A 43 100 BRCA BR-MEX-038 KRT78 SNP Missense_Mutation 12 53241832 C T 26 54 BRCA BR-MEX-038 SLC4A1 SNP Missense_Mutation 17 42335485 C T 19 56 BRCA BR-MEX-038 DNAH2 SNP Splice_site 17 7691178 G T 44 82 BRCA BR-MEX-038 ADD2 SNP Missense_Mutation 2 70919648 C T 22 81 BRCA BR-MEX-038 RTEL1 SNP Silent 20 62319667 C T 27 35 BRCA BR-MEX-038 CCDC160 SNP Silent 23 133379586 C T 23 43 BRCA BR-MEX-038 CRMP1 SNP Silent 4 5838519 C T 30 51 BRCA BR-MEX-038 FAM174A SNP Missense_Mutation 5 99897888 C G 31 67 BRCA BR-MEX-038 SLC17A1 SNP Missense_Mutation 6 25799135 C A 27 37 BRCA BR-MEX-038 SLC12A9 SNP Silent 7 100451915 G A 40 46 BRCA BR-MEX-038 SMO SNP Missense_Mutation 7 128846161 C T 18 82 BRCA BR-MEX-038 SLC29A4 SNP Silent 7 5338875 G A 48 77 BRCA BR-MEX-038 FLJ43860 SNP Missense_Mutation 8 142486177 C G 25 55 BRCA BR-MEX-038 SHC3 SNP Missense_Mutation 9 91653015 C T 23 96 BRCA BR-MEX-039 Unknown SNP Missense_Mutation 17 40179079 C G 27 52 BRCA BR-MEX-039 ELL SNP Silent 19 18561734 G T 39 46 BRCA BR-MEX-039 MAST4 SNP Missense_Mutation 5 66462340 G T 47 71 BRCA BR-MEX-041 SRM SNP Silent 1 11115844 C T 32 49 BRCA BR-MEX-041 NES SNP Nonsense_Mutation 1 156640274 G A 45 68 BRCA BR-MEX-041 FMO1 SNP Missense_Mutation 1 171254618 G A 45 54 BRCA BR-MEX-041 KIAA1614 SNP Missense_Mutation 1 180885553 C G 32 53 BRCA BR-MEX-041 F13B SNP Splice_site 1 197021962 G T 44 85 BRCA BR-MEX-041 ASPM SNP Missense_Mutation 1 197065151 G C 33 69 BRCA BR-MEX-041 KLHL12 SNP Silent 1 202894231 G C 45 53 BRCA BR-MEX-041 C1orf150 SNP Missense_Mutation 1 247737496 C T 29 60 BRCA BR-MEX-041 C1orf38 SNP Silent 1 28208663 C T 29 56 BRCA BR-MEX-041 PRDM16 SNP Silent 1 3350318 G A 45 69 BRCA BR-MEX-041 KCNK18 SNP Missense_Mutation 10 118957042 G C 33 56 BRCA BR-MEX-041 CHST15 SNP Missense_Mutation 10 125805613 C A 30 62 BRCA BR-MEX-041 FAM171A1 SNP Missense_Mutation 10 15255054 C T 30 82 BRCA BR-MEX-041 USP54 SNP Silent 10 75301259 G A 45 52 BRCA BR-MEX-041 CD248 SNP Missense_Mutation 11 66082679 G C 33 62 BRCA BR-MEX-041 HSP90B1 SNP Missense_Mutation 12 104341095 G A 33 82 BRCA BR-MEX-041 SIRT4 SNP Missense_Mutation 12 120741665 A G 4 47 BRCA BR-MEX-041 LRRC43 SNP Splice_site 12 122677294 C T 31 47 BRCA BR-MEX-041 KNTC1 SNP Silent 12 123014664 G C 45 41 BRCA BR-MEX-041 SLCO1A2 SNP Splice_site 12 21422702 C G 32 73 BRCA BR-MEX-041 PPFIBP1 SNP Missense_Mutation 12 27832475 C T 31 81 BRCA BR-MEX-041 SLC38A4 SNP Missense_Mutation 12 47186796 C G 30 69 BRCA BR-MEX-041 PPFIA2 SNP Missense_Mutation 12 81777860 C G 32 100 BRCA BR-MEX-041 SLC7A1 SNP Missense_Mutation 13 30110282 C T 23 94 BRCA BR-MEX-041 SOS2 SNP Missense_Mutation 14 50626421 T A 56 72 BRCA BR-MEX-041 NIN SNP Missense_Mutation 14 51225191 C G 29 89 BRCA BR-MEX-041 NIN SNP Missense_Mutation 14 51226707 C G 32 54 BRCA BR-MEX-041 NIN SNP Missense_Mutation 14 51226849 C G 29 58 BRCA BR-MEX-041 KCNH5 SNP Missense_Mutation 14 63468127 C T 29 87 BRCA BR-MEX-041 COQ6 SNP Missense_Mutation 14 74428012 G A 37 87 BRCA BR-MEX-041 CDH16 SNP Silent 16 66947083 G A 33 49 BRCA BR-MEX-041 HYDIN SNP Missense_Mutation 16 71101228 G C 37 48 BRCA BR-MEX-041 SLC38A8 SNP Missense_Mutation 16 84050851 C T 29 92 BRCA BR-MEX-041 NUFIP2 SNP Missense_Mutation 17 27620947 T C 60 61 BRCA BR-MEX-041 NMT1 SNP Nonsense_Mutation 17 43159088 G T 45 68 BRCA BR-MEX-041 MYST2 SNP Missense_Mutation 17 47875917 C G 32 77 BRCA BR-MEX-041 HELZ SNP Splice_site 17 65197247 C T 32 82 BRCA BR-MEX-041 SLC38A10 SNP Silent 17 79256031 G A 45 83 BRCA BR-MEX-041 MYH10 SNP Missense_Mutation 17 8387530 C T 29 96 BRCA BR-MEX-041 CDH2 SNP Missense_Mutation 18 25532153 C G 32 61 BRCA BR-MEX-041 PIGN SNP Missense_Mutation 18 59814235 G C 33 46 BRCA BR-MEX-041 SUPT5H SNP Missense_Mutation 19 39964707 C T 31 98 BRCA BR-MEX-041 KBTBD10 SNP Silent 2 170366387 C T 31 52 BRCA BR-MEX-041 PTH2R SNP Missense_Mutation 2 209324679 C A 28 82 BRCA BR-MEX-041 APOB SNP Silent 2 21258515 C T 30 63 BRCA BR-MEX-041 MSH6 SNP Silent 2 48026379 G A 33 80 BRCA BR-MEX-041 CD93 SNP Splice_site 20 23064588 C G 29 76 BRCA BR-MEX-041 BPIL1 SNP Splice_Site 20 31606867 G C 33 73 BRCA BR-MEX-041 SERINC3 SNP Missense_Mutation 20 43141599 C T 29 44 BRCA BR-MEX-041 IL10RB SNP Missense_Mutation 21 34668552 G A 45 71 BRCA BR-MEX-041 PDE9A SNP Splice_site 21 44195390 G C 41 63 BRCA BR-MEX-041 COL6A2 SNP Missense_Mutation 21 47545434 G C 33 73 BRCA BR-MEX-041 MTMR1 SNP Silent 23 149919276 G A 41 53 BRCA BR-MEX-041 YY2 SNP Silent 23 21874647 C T 30 50 BRCA BR-MEX-041 ABCF3 SNP Missense_Mutation 3 183905948 G C 41 96 BRCA BR-MEX-041 GRM7 SNP Silent 3 6903534 G A 45 53 BRCA BR-MEX-041 SPOCK3 SNP Missense_Mutation 4 167810330 G C 42 65 BRCA BR-MEX-041 C4orf41 SNP Missense_Mutation 4 184614120 C T 29 83 BRCA BR-MEX-041 GIN1 SNP Silent 5 102423863 G C 33 45 BRCA BR-MEX-041 BDP1 SNP Nonsense_Mutation 5 70806547 C T 17 44 BRCA BR-MEX-041 GRIK2 SNP Silent 6 101847189 C G 32 79 BRCA BR-MEX-041 HIST1H3B SNP Missense_Mutation 6 26032039 G A 37 98 BRCA BR-MEX-041 DOCK4 SNP Missense_Mutation 7 111634237 T C 58 85 BRCA BR-MEX-041 NDUFA5 SNP Missense_Mutation 7 123197081 G A 43 51 BRCA BR-MEX-041 CNTNAP2 SNP Silent 7 147914405 G T 41 44 BRCA BR-MEX-041 SCRN1 SNP Silent 7 29976189 T C 62 63 BRCA BR-MEX-041 HGF SNP Missense_Mutation 7 81346675 G C 33 58 BRCA BR-MEX-041 SET SNP Missense_Mutation 9 131454987 G C 45 94 BRCA BR-MEX-045 PRAMEF22 SNP Missense_Mutation 1 13036604 T A 60 57 BRCA BR-MEX-045 FLG SNP Missense_Mutation 1 152279717 C T 18 37 BRCA BR-MEX-045 BCAN SNP Splice_site 1 156617302 G T 44 79 BRCA BR-MEX-045 FCRL5 DEL Frame_Shift_Del 1 157494330 TGGGACGAGATAC - 51 53 BRCA BR-MEX-045 FCRL3 SNP Missense_Mutation 1 157665981 T A 54 47 BRCA BR-MEX-045 BLZF1 SNP Missense_Mutation 1 169346236 G A 37 52 BRCA BR-MEX-045 C1orf112 DEL Splice_site 1 169773383 TGAGTGAAGAAA - 59 83 BRCA BR-MEX-045 GNB1 SNP Synonymous 1 1721924 A C 3 61 BRCA BR-MEX-045 HMCN1 SNP Splice_Site 1 186120483 T A 57 88 BRCA BR-MEX-045 KIF21B SNP Missense_Mutation 1 200956187 C A 31 81 BRCA BR-MEX-045 IRF6 SNP Missense_Mutation 1 209961848 G A 39 73 BRCA BR-MEX-045 ESRRG SNP Missense_Mutation 1 216692560 A G 16 94 BRCA BR-MEX-045 CAPN2 SNP De_novo_Start_OutOfFrame 1 223946021 C T 19 46 BRCA BR-MEX-045 SIPA1L2 SNP Missense_Mutation 1 232650782 G A 39 62 BRCA BR-MEX-045 ERO1LB SNP Missense_Mutation 1 236413254 G T 46 92 BRCA BR-MEX-045 HEATR1 SNP Nonsense_Mutation 1 236716967 G A 48 100 BRCA BR-MEX-045 RYR2 SNP Missense_Mutation 1 237837467 A G 1 91 BRCA BR-MEX-045 VN1R5 SNP Missense_Mutation 1 247420074 T A 54 65 BRCA BR-MEX-045 OR2G6 SNP Missense_Mutation 1 248685732 C T 23 65 BRCA BR-MEX-045 LDLRAP1 SNP Missense_Mutation 1 25889156 G A 40 96 BRCA BR-MEX-045 MFSD2A SNP Silent 1 40431548 G C 47 68 BRCA BR-MEX-045 KDM4A SNP Missense_Mutation 1 44154615 A G 11 93 BRCA BR-MEX-045 C8A SNP Silent 1 57372365 A G 8 35 BRCA BR-MEX-045 MSH4 SNP Splice_Site 1 76343832 A G 15 89 BRCA BR-MEX-045 NRAP SNP Nonsense_Mutation 10 115381919 A T 8 51 BRCA BR-MEX-045 JAKMIP3 SNP Splice_site 10 133966463 A G 2 84 BRCA BR-MEX-045 KNDC1 SNP Missense_Mutation 10 135020435 G C 34 72 BRCA BR-MEX-045 MYO3A SNP Silent 10 26463033 C G 24 42 BRCA BR-MEX-045 BAMBI SNP Missense_Mutation 10 28971052 A G 16 90 BRCA BR-MEX-045 ANKRD30A SNP Missense_Mutation 10 37508262 G T 33 69 BRCA BR-MEX-045 TET1 SNP Missense 10 70446335 G A 42 53 BRCA BR-MEX-045 H2AFY2 SNP Missense_Mutation 10 71835575 A G 11 93 BRCA BR-MEX-045 POLR3A SNP Missense_Mutation 10 79741916 T C 49 69 BRCA BR-MEX-045 IDE SNP Nonsense_Mutation 10 94250283 G C 48 53 BRCA BR-MEX-045 PDE6C SNP Missense 10 95422914 C G 25 61 BRCA BR-MEX-045 KIAA1377 SNP Missense_Mutation 11 101833376 A T 1 60 BRCA BR-MEX-045 DYNC2H1 SNP Missense_Mutation 11 103047075 T C 52 62 BRCA BR-MEX-045 KBTBD3 SNP Silent 11 105923736 A G 8 52 BRCA BR-MEX-045 OR5T3 SNP Silent 11 56019879 C A 24 51 BRCA BR-MEX-045 ZP1 SNP Silent 11 60643108 C G 32 52 BRCA BR-MEX-045 OR2D3 SNP Missense_Mutation 11 6943218 G C 35 55 BRCA BR-MEX-045 PDE2A SNP Missense_Mutation 11 72289533 G A 41 98 BRCA BR-MEX-045 RAB6A SNP Missense_Mutation 11 73429898 C T 19 97 BRCA BR-MEX-045 TMEM132D SNP Silent 12 130184486 G T 35 35 BRCA BR-MEX-045 IRAK4 SNP Silent 12 44172010 A G 6 48 BRCA BR-MEX-045 CLEC4D SNP Silent 12 8673843 A G 1 55 BRCA BR-MEX-045 FGD6 SNP Silent 12 95479649 G C 34 55 BRCA BR-MEX-045 HSPH1 SNP Splice_Site 13 31724320 C A 24 96 BRCA BR-MEX-045 FRY SNP Silent 13 32745177 C A 27 99 BRCA BR-MEX-045 RNASE4 SNP Splice_site 14 21167533 G T 47 77 BRCA BR-MEX-045 ANGEL1 SNP Missense_Mutation 14 77275857 C G 31 57 BRCA BR-MEX-045 DUOX2 SNP Silent 15 45399610 G A 40 45 BRCA BR-MEX-045 IGDCC3 SNP Missense_Mutation 15 65621395 T C 54 57 BRCA BR-MEX-045 LCTL DEL Splice_Site 15 66853654 CTGTGAACA - 28 81 BRCA BR-MEX-045 CLEC16A SNP Missense_Mutation 16 11217654 A G 6 91 BRCA BR-MEX-045 CHD9 SNP Missense_Mutation 16 53190578 C G 32 67 BRCA BR-MEX-045 C16orf70 DEL Frame_Shift_Del 16 67178764 A - 6 49 BRCA BR-MEX-045 FAM65A SNP Missense_Mutation 16 67578687 C G 27 45 BRCA BR-MEX-045 ADAD2 SNP Missense_Mutation 16 84228910 C A 27 57 BRCA BR-MEX-045 FAM83G SNP Silent 17 18881761 G A 48 64 BRCA BR-MEX-045 STAC2 SNP Silent 17 37381723 C A 23 46 BRCA BR-MEX-045 CASC3 SNP Nonsense_Mutation 17 38325609 C G 20 66 BRCA BR-MEX-045 ATP2A3 SNP Missense_Mutation 17 3851122 C A 18 52 BRCA BR-MEX-045 MYBBP1A SNP Silent 17 4444824 C G 27 34 BRCA BR-MEX-045 MED13 SNP Missense_Mutation 17 60039032 G A 42 97 BRCA BR-MEX-045 ABCA9 DEL Frame_Shift_Del 17 66980259 GTGGGTG - 36 44 BRCA BR-MEX-045 TP53 SNP Missense_Mutation 17 7578268 A T 3 88 BRCA BR-MEX-045 ASPSCR1 SNP Missense_Mutation 17 79952725 A G 6 60 BRCA BR-MEX-045 DUS1L SNP Missense_Mutation 17 80021368 C T 31 89 BRCA BR-MEX-045 SERPINB4 SNP Missense_Mutation 18 61324517 A G 1 81 BRCA BR-MEX-045 CDH19 SNP Missense_Mutation 18 64221662 A T 1 88 BRCA BR-MEX-045 HOMER3 SNP Silent 19 19043828 G A 47 60 BRCA BR-MEX-045 ZNF486 SNP Silent 19 20295221 C T 26 47 BRCA BR-MEX-045 LGI4 SNP Missense_Mutation 19 35617881 G C 38 48 BRCA BR-MEX-045 ZNF180 SNP Missense_Mutation 19 44983515 C G 30 52 BRCA BR-MEX-045 NANOS2 SNP Missense_Mutation 19 46417638 C G 18 93 BRCA BR-MEX-045 MUC16 SNP Missense_Mutation 19 9087026 C G 24 54 BRCA BR-MEX-045 RRM2 SNP Silent 2 10263651 C G 23 30 BRCA BR-MEX-045 TGFBRAP1 SNP Silent 2 105924129 C T 27 49 BRCA BR-MEX-045 INHBB SNP Missense_Mutation 2 121107161 T G 62 88 BRCA BR-MEX-045 DARS SNP Missense_Mutation 2 136719045 G C 40 84 BRCA BR-MEX-045 LRP1B SNP Missense_Mutation 2 141458185 T G 63 89 BRCA BR-MEX-045 STAM2 SNP Missense_Mutation 2 152977246 T C 57 33 BRCA BR-MEX-045 PIKFYVE SNP Missense_Mutation 2 209190374 C T 30 63 BRCA BR-MEX-045 PTPRN SNP Splice_site 2 220164105 C T 17 93 BRCA BR-MEX-045 HDLBP SNP Silent 2 242179059 C A 21 66 BRCA BR-MEX-045 DQX1 SNP Missense_Mutation 2 74751124 C A 25 82 BRCA BR-MEX-045 INPP4A SNP Missense_Mutation 2 99163107 G C 36 51 BRCA BR-MEX-045 FAM113A SNP Missense_Mutation 20 2819099 C T 23 74 BRCA BR-MEX-045 RPN2 SNP Missense_Mutation 20 35812676 G C 33 73 BRCA BR-MEX-045 RALGAPB SNP Missense_Mutation 20 37174987 C A 18 95 BRCA BR-MEX-045 B4GALT5 SNP Missense_Mutation 20 48252929 C G 25 86 BRCA BR-MEX-045 SRMS SNP Silent 20 62178712 G A 44 52 BRCA BR-MEX-045 RNF160 SNP Missense_Mutation 21 30359077 T G 56 87 BRCA BR-MEX-045 APOBEC3F SNP Missense_Mutation 22 39448258 C G 32 54 BRCA BR-MEX-045 SREBF2 SNP Missense_Mutation 22 42271637 C G 30 100 BRCA BR-MEX-045 CYBB SNP Missense_Mutation 23 37653044 T G 64 70 BRCA BR-MEX-045 LEKR1 SNP Silent 3 156763425 A G 12 54 BRCA BR-MEX-045 BSN SNP Missense_Mutation 3 49699102 T C 56 53 BRCA BR-MEX-045 TACR3 SNP Missense_Mutation 4 104510964 G A 37 60 BRCA BR-MEX-045 ARAP2 SNP Silent 4 36212116 A G 4 29 BRCA BR-MEX-045 OCIAD2 SNP Splice_site 4 48896023 G C 40 57 BRCA BR-MEX-045 CEP135 SNP Missense_Mutation 4 56847402 G A 33 70 BRCA BR-MEX-045 UGT2A1 SNP Silent 4 70513063 A T 11 53 BRCA BR-MEX-045 MAN2A1 SNP Missense_Mutation 5 109153073 A T 2 54 BRCA BR-MEX-045 DMXL1 SNP Silent 5 118505898 A T 7 50 BRCA BR-MEX-045 SEPT8 SNP Missense_Mutation 5 132101185 C T 23 100 BRCA BR-MEX-045 PCDHB2 SNP Missense_Mutation 5 140475366 G A 41 53 BRCA BR-MEX-045 LOC100268168 INS In_frame_Ins 5 172381973 - GGT 3 60 BRCA BR-MEX-045 IL31RA SNP Splice_site 5 55178872 C T 27 51 BRCA BR-MEX-045 CD164 SNP Missense 6 109699105 G T 41 51 BRCA BR-MEX-045 C6orf170 SNP Missense_Mutation 6 121401947 G T 48 55 BRCA BR-MEX-045 EDN1 SNP Silent 6 12290892 G C 46 67 BRCA BR-MEX-045 GRM1 SNP Silent 6 146350890 G T 47 78 BRCA BR-MEX-045 TULP4 SNP Nonsense_Mutation 6 158850868 C G 29 100 BRCA BR-MEX-045 MRS2 SNP Missense_Mutation 6 24423200 G A 48 90 BRCA BR-MEX-045 HIST1H4G SNP Missense_Mutation 6 26246918 T G 62 69 BRCA BR-MEX-045 TNXB SNP Silent 6 32037553 G T 43 41 BRCA BR-MEX-045 PKHD1 SNP Missense_Mutation 6 51612740 T A 60 61 BRCA BR-MEX-045 GABRR2 SNP Silent 6 89967434 G A 35 53 BRCA BR-MEX-045 C6orf168 SNP Missense_Mutation 6 99797158 C T 23 78 BRCA BR-MEX-045 NUP205 SNP Missense_Mutation 7 135277850 G C 36 63 BRCA BR-MEX-045 LUC7L2 SNP Missense_Mutation 7 139030337 G C 48 53 BRCA BR-MEX-045 CHPF2 SNP Missense_Mutation 7 150932607 G T 46 100 BRCA BR-MEX-045 CARD11 SNP Missense_Mutation 7 2963895 G T 35 55 BRCA BR-MEX-045 GGCT SNP Silent 7 30538452 G A 40 48 BRCA BR-MEX-045 CYTH3 SNP Missense_Mutation 7 6205421 T C 62 77 BRCA BR-MEX-045 AKAP9 SNP Silent 7 91645550 A T 7 53 BRCA BR-MEX-045 ZNF7 SNP Missense_Mutation 8 146067241 A T 14 50 BRCA BR-MEX-045 MSR1 SNP Missense_Mutation 8 16021738 C G 19 50 BRCA BR-MEX-045 SFTPC SNP Missense_Mutation 8 22021050 C G 17 64 BRCA BR-MEX-045 TEX15 SNP Missense 8 30744766 G T 36 52 BRCA BR-MEX-045 NUP188 SNP Missense_Mutation 9 131743563 G C 33 56 BRCA BR-MEX-045 BNC2 SNP Missense_Mutation 9 16419457 A C 11 76 BRCA BR-MEX-045 C9orf131 SNP Missense_Mutation 9 35044977 G A 36 59 BRCA BR-MEX-048 NLRP2 SNP Missense_Mutation 19 55493760 G C 33 44 BRCA BR-MEX-048 DNER SNP Missense_Mutation 2 230231808 G T 38 74 BRCA BR-MEX-048 SSPO SNP Missense_Mutation 7 149518045 G T 43 72 BRCA BR-MEX-048 TUSC3 SNP Silent 8 15397978 G T 39 53 BRCA BR-MEX-050 COL11A1 SNP Missense_Mutation 1 103481250 G A 41 82 BRCA BR-MEX-050 ABL2 SNP Missense_Mutation 1 179086640 G C 34 85 BRCA BR-MEX-050 C1orf35 INS Frame_Shift_Ins 1 228289842 - C 42 48 BRCA BR-MEX-050 WDR64 SNP Missense_Mutation 1 241901672 G A 39 81 BRCA BR-MEX-050 HNRNPU SNP Silent 1 245027169 G A 40 49 BRCA BR-MEX-050 NOLC1 SNP Missense_Mutation 10 103912186 C T 31 61 BRCA BR-MEX-050 MTPAP DEL Start_Codon_Del 10 30638198 CCGCCATTGCT - 18 64 BRCA BR-MEX-050 CDH23 SNP Missense_Mutation 10 73490340 C A 21 72 BRCA BR-MEX-050 PTEN SNP Splice_site 10 89653784 A T 16 86 BRCA BR-MEX-050 PTEN DEL Frame_Shift_Del 10 89692949 T - 52 88 BRCA BR-MEX-050 MAML2 SNP Missense_Mutation 11 95826315 C T 23 73 BRCA BR-MEX-050 PNN SNP Missense 14 39648305 G A 38 99 BRCA BR-MEX-050 C14orf50 SNP Silent 14 65054903 C T 29 59 BRCA BR-MEX-050 C2CD4A SNP Missense 15 62359815 G T 48 64 BRCA BR-MEX-050 SCAMP5 SNP Missense_Mutation 15 75308942 G A 40 64 BRCA BR-MEX-050 CSPG4 SNP Missense 15 75968564 C T 31 51 BRCA BR-MEX-050 PDZD9 SNP Silent 16 21995657 A G 8 56 BRCA BR-MEX-050 HP SNP Synonymous 16 72094312 G A 42 48 BRCA BR-MEX-050 EPX SNP Missense_Mutation 17 56274358 C T 31 81 BRCA BR-MEX-050 ZNF627 SNP Missense_Mutation 19 11725438 C T 27 50 BRCA BR-MEX-050 JUNB SNP Missense_Mutation 19 12902593 C G 20 98 BRCA BR-MEX-050 PAK4 DEL In_frame_Del 19 39664276 TCC - 58 60 BRCA BR-MEX-050 HAS1 INS Frame_Shift_Ins 19 52216941 - C 42 58 BRCA BR-MEX-050 BRSK1 SNP Missense 19 55815456 C T 30 90 BRCA BR-MEX-050 DDX11L2 SNP Missense 2 114357735 G C 44 74 BRCA BR-MEX-050 TTN SNP Silent 2 179578652 G A 48 60 BRCA BR-MEX-050 WNT10A SNP Silent 2 219754758 C T 19 62 BRCA BR-MEX-050 ASPRV1 SNP Missense 2 70190393 G T 43 62 BRCA BR-MEX-050 PRPF6 SNP Missense_Mutation 20 62626330 G A 33 100 BRCA BR-MEX-050 LONRF3 SNP Missense_Mutation 23 118112409 C T 23 73 BRCA BR-MEX-050 UTP14A SNP Missense_Mutation 23 129054696 T C 58 68 BRCA BR-MEX-050 COL29A1 SNP Nonsense 3 130098410 C T 27 52 BRCA BR-MEX-050 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA BR-MEX-050 MUC4 SNP Missense 3 195507395 T C 59 36 BRCA BR-MEX-050 SLC4A7 SNP Missense_Mutation 3 27442271 C T 32 51 BRCA BR-MEX-050 ENTPD3 SNP Silent 3 40442498 G A 45 60 BRCA BR-MEX-050 RBM15B DEL Frame_Shift_Del 3 51429530 G - 38 56 BRCA BR-MEX-050 ANKHD1-EIF4EBP3 SNP Missense_Mutation 5 139917106 C T 27 78 BRCA BR-MEX-050 POU4F3 SNP Silent 5 145719674 C T 32 61 BRCA BR-MEX-050 MAP3K1 DEL Frame_Shift_Del 5 56177695 C - 30 63 BRCA BR-MEX-050 MAP3K1 SNP Missense_Mutation 5 56184121 G A 47 95 BRCA BR-MEX-050 ZAN SNP Missense 7 100350394 T C 52 45 BRCA BR-MEX-050 ADAM32 SNP Splice_site 8 39080559 A G 12 37 BRCA BR-MEX-055 DDX20 SNP Missense_Mutation 1 112309267 C T 27 65 BRCA BR-MEX-055 OTUD7B SNP Missense_Mutation 1 149916196 T A 49 57 BRCA BR-MEX-055 LCE3E SNP Missense_Mutation 1 152538605 A T 14 54 BRCA BR-MEX-055 PEAR1 SNP Missense_Mutation 1 156878726 C A 32 80 BRCA BR-MEX-055 FCRL1 SNP Missense_Mutation 1 157772323 C T 26 49 BRCA BR-MEX-055 IFI16 SNP Nonsense_Mutation 1 159021511 G T 33 55 BRCA BR-MEX-055 VANGL2 SNP Missense_Mutation 1 160390304 G C 36 66 BRCA BR-MEX-055 POU2F1 SNP Silent 1 167358992 C T 29 67 BRCA BR-MEX-055 TPR SNP Missense_Mutation 1 186310426 C G 32 54 BRCA BR-MEX-055 MKNK1 SNP Nonsense_Mutation 1 47028390 G T 44 76 BRCA BR-MEX-055 HOOK1 SNP Missense_Mutation 1 60299190 C G 29 65 BRCA BR-MEX-055 GRK5 SNP Missense_Mutation 10 121182689 C G 29 60 BRCA BR-MEX-055 SLC39A12 SNP Missense_Mutation 10 18242383 C A 21 53 BRCA BR-MEX-055 EPC1 SNP Missense_Mutation 10 32582614 T C 62 92 BRCA BR-MEX-055 OR5T2 SNP Missense_Mutation 11 56000165 T C 57 82 BRCA BR-MEX-055 OR8K3 SNP Silent 11 56085884 C A 32 62 BRCA BR-MEX-055 OR5B2 SNP Silent 11 58190591 C T 29 37 BRCA BR-MEX-055 AHNAK SNP Missense_Mutation 11 62293161 C T 32 60 BRCA BR-MEX-055 CEND1 SNP Missense_Mutation 11 788363 G C 33 77 BRCA BR-MEX-055 TMEM132D SNP Missense_Mutation 12 129694156 G A 39 96 BRCA BR-MEX-055 COL2A1 SNP Silent 12 48376658 G A 39 49 BRCA BR-MEX-055 OR8S1 SNP Missense_Mutation 12 48920187 G A 38 56 BRCA BR-MEX-055 MLL2 SNP Missense_Mutation 12 49431811 G A 39 88 BRCA BR-MEX-055 DNAJC14 SNP Missense_Mutation 12 56221331 G C 33 62 BRCA BR-MEX-055 LRRC16B SNP Silent 14 24524963 C T 31 40 BRCA BR-MEX-055 FAM179B SNP Silent 14 45431823 C T 32 74 BRCA BR-MEX-055 LRRK1 SNP Silent 15 101555552 G T 37 50 BRCA BR-MEX-055 CASC5 SNP Missense_Mutation 15 40951571 G A 46 63 BRCA BR-MEX-055 TLN2 SNP Missense_Mutation 15 63088449 G A 43 86 BRCA BR-MEX-055 RBPMS2 SNP Silent 15 65043769 C A 26 61 BRCA BR-MEX-055 UBL7 SNP Missense_Mutation 15 74743785 A G 4 92 BRCA BR-MEX-055 CHD2 SNP Missense_Mutation 15 93510703 C G 32 100 BRCA BR-MEX-055 SRRM2 SNP Missense_Mutation 16 2812969 C T 19 68 BRCA BR-MEX-055 SLFN12 SNP Missense_Mutation 17 33738587 C T 29 47 BRCA BR-MEX-055 TNRC6C SNP Missense_Mutation 17 76073294 C T 24 97 BRCA BR-MEX-055 MYO5B SNP Silent 18 47488663 G T 33 62 BRCA BR-MEX-055 ATP8B3 SNP Missense_Mutation 19 1790799 G C 34 69 BRCA BR-MEX-055 KCNN1 SNP Missense_Mutation 19 18100615 C T 31 93 BRCA BR-MEX-055 ZNF493 SNP Missense_Mutation 19 21606007 C G 29 50 BRCA BR-MEX-055 GPATCH1 SNP Missense_Mutation 19 33588754 C A 26 81 BRCA BR-MEX-055 SIRT2 SNP Missense_Mutation 19 39380352 C G 30 83 BRCA BR-MEX-055 BLOC1S3 SNP Missense_Mutation 19 45683113 C T 23 68 BRCA BR-MEX-055 CLEC11A SNP Silent 19 51227335 C T 31 41 BRCA BR-MEX-055 ALPI SNP Silent 2 233323030 C T 27 39 BRCA BR-MEX-055 C2orf53 SNP Missense_Mutation 2 27360083 C T 31 28 BRCA BR-MEX-055 GTF3C2 SNP Missense_Mutation 2 27560354 G C 33 86 BRCA BR-MEX-055 LRRTM4 SNP Missense_Mutation 2 77746592 G A 33 83 BRCA BR-MEX-055 C20orf94 SNP Missense_Mutation 20 10603812 G A 33 83 BRCA BR-MEX-055 GGA1 SNP Nonsense_Mutation 22 38028482 C G 29 76 BRCA BR-MEX-055 PPARA SNP Missense_Mutation 22 46615733 G T 33 73 BRCA BR-MEX-055 IL17REL SNP Splice_site 22 50439019 G C 41 58 BRCA BR-MEX-055 PLXNB2 SNP Silent 22 50717369 G A 33 62 BRCA BR-MEX-055 SCO2 SNP Silent 22 50962652 G A 45 51 BRCA BR-MEX-055 SCO2 SNP Missense_Mutation 22 50962783 G A 37 47 BRCA BR-MEX-055 KIAA1210 SNP Silent 23 118222670 T C 53 45 BRCA BR-MEX-055 GLUD2 SNP Missense_Mutation 23 120182923 C A 32 79 BRCA BR-MEX-055 ZNF75D SNP Missense_Mutation 23 134421232 C G 32 55 BRCA BR-MEX-055 PLXNB3 SNP Missense_Mutation 23 153032497 A C 2 86 BRCA BR-MEX-055 SSX5 SNP Missense_Mutation 23 48054185 T A 58 57 BRCA BR-MEX-055 MAGEE1 SNP Missense_Mutation 23 75650473 C A 28 43 BRCA BR-MEX-055 PCDH11X SNP Missense_Mutation 23 91132509 C G 32 70 BRCA BR-MEX-055 MORC1 SNP Missense_Mutation 3 108677946 C G 30 63 BRCA BR-MEX-055 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA BR-MEX-055 TTC14 SNP Missense_Mutation 3 180324382 G C 33 100 BRCA BR-MEX-055 CRIPAK SNP Missense_Mutation 4 1388843 G A 40 74 BRCA BR-MEX-055 C4orf41 SNP Missense_Mutation 4 184615847 G A 33 97 BRCA BR-MEX-055 UGT2B10 SNP Missense_Mutation 4 69682371 A T 1 79 BRCA BR-MEX-055 FSTL4 SNP Missense_Mutation 5 132545909 C T 19 52 BRCA BR-MEX-055 DEPDC1B SNP Nonsense_Mutation 5 59940698 G A 48 80 BRCA BR-MEX-055 REPS1 SNP Missense_Mutation 6 139226230 C G 30 99 BRCA BR-MEX-055 STX11 SNP Silent 6 144508361 C T 27 48 BRCA BR-MEX-055 NHLRC1 SNP Missense_Mutation 6 18122786 C T 31 79 BRCA BR-MEX-055 GPLD1 SNP Missense_Mutation 6 24437470 C T 23 79 BRCA BR-MEX-055 TNXB SNP Missense_Mutation 6 32032795 G T 48 55 BRCA BR-MEX-055 SLC25A27 SNP Nonsense_Mutation 6 46637948 C T 19 57 BRCA BR-MEX-055 RNGTT SNP Missense_Mutation 6 89322579 G T 44 55 BRCA BR-MEX-055 ZNF804B SNP Silent 7 88965620 T C 50 55 BRCA BR-MEX-055 CSMD3 SNP Silent 8 113697828 G A 45 54 BRCA BR-MEX-055 ZNF707 SNP Missense_Mutation 8 144776684 G A 35 53 BRCA BR-MEX-055 LAMC3 SNP Silent 9 133942459 C A 23 44 BRCA BR-MEX-055 BNC2 SNP Missense_Mutation 9 16419484 C T 27 65 BRCA BR-MEX-058 SLC9A3R1 SNP Nonsense_Mutation 17 72745057 C A 19 68 BRCA BR-MEX-059 NR1I3 SNP Silent 1 161199538 G A 36 57 BRCA BR-MEX-059 LMOD1 SNP Missense_Mutation 1 201869835 C G 24 52 BRCA BR-MEX-059 SCNN1A SNP Missense_Mutation 12 6472688 C T 31 48 BRCA BR-MEX-059 GRTP1 SNP Missense_Mutation 13 114009787 T A 49 84 BRCA BR-MEX-059 RASGRF1 SNP Missense_Mutation 15 79350759 C A 19 93 BRCA BR-MEX-059 A2BP1 SNP Missense_Mutation 16 7703846 G A 38 93 BRCA BR-MEX-059 MYOCD SNP Silent 17 12666490 G A 39 38 BRCA BR-MEX-059 TEKT3 SNP Missense_Mutation 17 15231385 C T 31 67 BRCA BR-MEX-059 RAB11FIP5 SNP Silent 2 73339525 G C 47 52 BRCA BR-MEX-059 IL2RB SNP Silent 22 37524286 G A 40 44 BRCA BR-MEX-059 TFDP3 SNP Silent 23 132351202 C T 31 46 BRCA BR-MEX-059 MED12 SNP Missense_Mutation 23 70362028 C T 18 80 BRCA BR-MEX-059 B4GALT4 SNP Silent 3 118942961 G A 48 62 BRCA BR-MEX-059 ? SNP Missense_Mutation 3 129127697 G A 40 38 BRCA BR-MEX-059 PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA BR-MEX-059 HK3 SNP Missense_Mutation 5 176318494 C T 28 65 BRCA BR-MEX-059 MAP3K1 SNP Nonsense_Mutation 5 56189448 C T 29 72 BRCA BR-MEX-059 WASF1 SNP Silent 6 110423083 T C 57 48 BRCA BR-MEX-059 TSPYL1 SNP Missense_Mutation 6 116599741 C A 31 71 BRCA BR-MEX-059 SPAM1 SNP Silent 7 123594443 T A 55 36 BRCA BR-MEX-059 AKAP9 SNP Silent 7 91712957 G T 45 62 BRCA BR-MEX-059 RB1CC1 SNP Missense_Mutation 8 53569070 G C 36 51 BRCA BR-MEX-059 ASPH SNP Missense_Mutation 8 62489375 G A 40 67 BRCA BR-MEX-059 MPDZ SNP Nonsense_Mutation 9 13192201 G A 37 73 BRCA BR-MEX-059 FAM78A SNP Missense_Mutation 9 134136633 G T 44 66 BRCA BR-MEX-059 SLC24A2 SNP Missense_Mutation 9 19785967 C T 19 84 BRCA BR-MEX-071 KDM2A SNP Missense_Mutation 11 67020966 T C 58 77 BRCA BR-MEX-071 SLCO1A2 SNP Silent 12 21427492 G A 38 42 BRCA BR-MEX-071 USP44 SNP Silent 12 95914906 G A 35 45 BRCA BR-MEX-071 OR4N4 SNP Missense_Mutation 15 22382990 A C 7 48 BRCA BR-MEX-071 CANT1 SNP Missense 17 76993101 A G 10 48 BRCA BR-MEX-071 NKX2-4 SNP Missense 20 21376754 C A 25 79 BRCA BR-MEX-071 RGL4 SNP Splice_Site 22 24037135 A T 15 61 BRCA BR-MEX-071 ASPHD2 DEL In_frame_Del 22 26829682 CCT - 26 55 BRCA BR-MEX-071 ZBTB33 SNP Missense_Mutation 23 119387962 C A 24 67 BRCA BR-MEX-071 CNGA2 SNP Silent 23 150912838 G A 36 51 BRCA BR-MEX-071 MTMR8 SNP Missense 23 63563558 C T 26 71 BRCA BR-MEX-071 PGK1 SNP Missense_Mutation 23 77380384 G C 44 92 BRCA BR-MEX-071 ZBTB38 SNP Missense_Mutation 3 141162317 C T 28 69 BRCA BR-MEX-071 GABRA2 SNP Silent 4 46314695 T C 56 63 BRCA BR-MEX-071 GRIK2 SNP Synonymous 6 102266253 G A 40 47 BRCA BR-MEX-071 ZKSCAN4 SNP Missense_Mutation 6 28213040 G A 40 46 BRCA BR-MEX-071 FLJ45340 SNP Read-through 7 128292355 G T 34 64 BRCA BR-MEX-071 PKD1L1 SNP Missense_Mutation 7 47945530 T C 49 33 BRCA BR-MEX-071 VPS13B SNP Missense_Mutation 8 100883728 G T 44 61 BRCA BR-MEX-071 NSMCE2 SNP Missense_Mutation 8 126369472 G C 34 52 BRCA BR-MEX-073 ITLN2 SNP Missense_Mutation 1 160920399 G A 39 71 BRCA BR-MEX-073 RASAL2 SNP Missense_Mutation 1 178427045 G A 38 78 BRCA BR-MEX-073 FCN3 SNP Missense_Mutation 1 27700892 C T 23 74 BRCA BR-MEX-073 SYNC SNP Missense_Mutation 1 33160687 C A 30 69 BRCA BR-MEX-073 CYP4A11 SNP Missense_Mutation 1 47399641 G C 35 58 BRCA BR-MEX-073 KCNA4 SNP Missense_Mutation 11 30032500 G C 48 100 BRCA BR-MEX-073 IGHMBP2 SNP Nonsense_Mutation 11 68673544 C T 25 85 BRCA BR-MEX-073 INPPL1 SNP Missense_Mutation 11 71941244 G A 44 75 BRCA BR-MEX-073 IFT81 SNP Missense_Mutation 12 110566862 C G 28 97 BRCA BR-MEX-073 SLC25A3 SNP Missense_Mutation 12 98989258 G C 47 100 BRCA BR-MEX-073 ATP11A SNP Silent 13 113508650 C G 32 41 BRCA BR-MEX-073 IGDCC3 SNP Missense_Mutation 15 65621880 T A 54 55 BRCA BR-MEX-073 IFT140 SNP Missense_Mutation 16 1614140 C G 30 58 BRCA BR-MEX-073 SLC38A8 SNP Missense_Mutation 16 84050749 C A 22 92 BRCA BR-MEX-073 LGALS9 SNP Missense_Mutation 17 25974429 A G 4 76 BRCA BR-MEX-073 MYO18A SNP Silent 17 27493670 G A 35 74 BRCA BR-MEX-073 TP53 SNP Missense_Mutation 17 7578265 A G 12 68 BRCA BR-MEX-073 RPRD1A SNP Silent 18 33610797 G A 33 65 BRCA BR-MEX-073 DCC SNP Missense_Mutation 18 50936828 T A 50 92 BRCA BR-MEX-073 ZNF136 SNP Nonsense_Mutation 19 12296973 C T 23 59 BRCA BR-MEX-073 MAP3K10 SNP Missense_Mutation 19 40718847 C G 30 92 BRCA BR-MEX-073 PNMAL2 SNP Missense_Mutation 19 46998617 C G 31 52 BRCA BR-MEX-073 SLC6A16 SNP Missense_Mutation 19 49813714 G A 33 63 BRCA BR-MEX-073 MDH1B SNP Missense_Mutation 2 207619970 G C 33 33 BRCA BR-MEX-073 KIF1A SNP Splice_site 2 241657468 G A 40 62 BRCA BR-MEX-073 HK2 SNP Missense_Mutation 2 75116482 G A 39 94 BRCA BR-MEX-073 LRRTM4 SNP Missense_Mutation 2 77746805 G C 48 75 BRCA BR-MEX-073 ZNF2 SNP Missense_Mutation 2 95847742 G A 40 94 BRCA BR-MEX-073 ProSAPiP1 SNP Missense_Mutation 20 3146450 C T 23 83 BRCA BR-MEX-073 IL3RA SNP Missense_Mutation 23 1499941 C T 30 61 BRCA BR-MEX-073 CDKL5 SNP Missense_Mutation 23 18622026 C A 21 96 BRCA BR-MEX-073 TAF1 SNP Silent 23 70678123 C T 29 56 BRCA BR-MEX-073 ATP2B2 SNP Missense_Mutation 3 10413573 G T 43 84 BRCA BR-MEX-073 TNK2 SNP Missense_Mutation 3 195595194 C T 29 98 BRCA BR-MEX-073 RAD54L2 SNP Missense_Mutation 3 51667964 C A 21 98 BRCA BR-MEX-073 DCP1A SNP Missense_Mutation 3 53326725 C G 32 82 BRCA BR-MEX-073 ANK2 SNP Silent 4 114275201 G A 40 37 BRCA BR-MEX-073 PPID SNP Silent 4 159636792 G A 40 47 BRCA BR-MEX-073 BMP3 SNP Missense_Mutation 4 81967348 G A 34 82 BRCA BR-MEX-073 ZBTB2 SNP Missense_Mutation 6 151687617 G A 45 65 BRCA BR-MEX-073 EXOC2 SNP Missense_Mutation 6 633074 C G 30 97 BRCA BR-MEX-073 PHF3 SNP Missense_Mutation 6 64395532 A G 4 43 BRCA BR-MEX-073 ACHE SNP Missense_Mutation 7 100491412 A C 7 88 BRCA BR-MEX-073 PLEC SNP Silent 8 145007436 G A 41 75 BRCA BR-MEX-073 SEC61B SNP Missense_Mutation 9 101990253 C G 32 72 BRCA BR-MEX-074 POLR2A SNP Missense_Mutation 17 7412890 A G 4 86 BRCA BR-MEX-074 ATP1B2 SNP Silent 17 7557506 C T 23 45 BRCA BR-MEX-074 MOBKL3 SNP Missense_Mutation 2 198405091 A G 12 92 BRCA BR-MEX-074 SLC13A3 SNP Missense_Mutation 20 45188672 G A 37 54 BRCA BR-MEX-074 ZBED4 SNP Missense_Mutation 22 50277525 G A 43 70 BRCA BR-MEX-074 ZBED4 SNP Nonsense_Mutation 22 50277824 G T 41 96 BRCA BR-MEX-074 ZBED4 SNP Missense_Mutation 22 50278112 G C 33 96 BRCA BR-MEX-074 ZBED4 SNP Missense_Mutation 22 50278306 G C 41 97 BRCA BR-MEX-074 ZBED4 SNP Missense_Mutation 22 50278672 G C 45 96 BRCA BR-MEX-074 ZBED4 SNP Missense_Mutation 22 50278829 G C 33 74 BRCA BR-MEX-074 ZBED4 SNP Silent 22 50279872 G T 41 48 BRCA BR-MEX-074 ZBED4 SNP Missense_Mutation 22 50280163 G A 48 52 BRCA BR-MEX-074 ZBED4 SNP Missense_Mutation 22 50280238 G A 47 84 BRCA BR-MEX-074 ZBED4 SNP Missense_Mutation 22 50280605 G T 45 96 BRCA BR-MEX-074 WDR53 SNP Missense_Mutation 3 196287976 T G 62 74 BRCA BR-MEX-074 NEK10 SNP Silent 3 27204069 G A 33 66 BRCA BR-MEX-074 TMIE SNP Missense_Mutation 3 46750683 C T 18 57 BRCA BR-MEX-074 UIMC1 SNP Missense_Mutation 5 176335648 T C 49 81 BRCA BR-MEX-074 DNAH8 SNP Missense_Mutation 6 38747771 G A 41 58 BRCA BR-MEX-074 AKR1B1 SNP Silent 7 134133183 G A 37 46 BRCA BR-MEX-074 CARD11 SNP Missense_Mutation 7 2955003 C T 19 91 BRCA BR-MEX-074 LY6K SNP Missense_Mutation 8 143784772 G A 39 46 BRCA BR-MEX-076 GSTM4 SNP Missense_Mutation 1 110199344 C T 26 71 BRCA BR-MEX-076 TAS1R3 SNP Missense_Mutation 1 1267968 G A 46 45 BRCA BR-MEX-076 HMCN1 SNP Nonsense_Mutation 1 186141251 G T 47 100 BRCA BR-MEX-076 LAPTM5 SNP Splice_site 1 31215304 G A 37 27 BRCA BR-MEX-076 CC2D2B SNP Silent 10 97772306 G A 35 49 BRCA BR-MEX-076 SLC35C1 SNP Missense_Mutation 11 45832362 G A 33 69 BRCA BR-MEX-076 GPR133 SNP Missense_Mutation 12 131569089 G A 39 67 BRCA BR-MEX-076 POSTN SNP Silent 13 38164611 C T 27 25 BRCA BR-MEX-076 TCEB3B SNP Missense_Mutation 18 44560981 C T 28 54 BRCA BR-MEX-076 ZNF700 SNP Missense_Mutation 19 12058091 G A 46 52 BRCA BR-MEX-076 ZNF614 SNP Silent 19 52520440 C T 29 47 BRCA BR-MEX-076 TTN SNP Missense_Mutation 2 179455788 C T 17 100 BRCA BR-MEX-076 TTC15 SNP Missense_Mutation 2 3391908 G T 39 54 BRCA BR-MEX-076 C20orf7 SNP Missense_Mutation 20 13797553 G A 46 90 BRCA BR-MEX-076 KCNB1 SNP Silent 20 47991242 G A 38 47 BRCA BR-MEX-076 HS6ST2 SNP Missense_Mutation 23 132092463 C A 22 71 BRCA BR-MEX-076 ARHGAP31 SNP Missense_Mutation 3 119132887 G A 48 50 BRCA BR-MEX-076 MATR3 SNP Missense_Mutation 5 138651827 C T 24 87 BRCA BR-MEX-076 ODZ2 SNP Silent 5 167545427 C T 19 52 BRCA BR-MEX-076 HRH2 SNP Missense_Mutation 5 175111197 G A 38 49 BRCA BR-MEX-076 RAET1E SNP Splice_site 6 150209805 T A 53 55 BRCA BR-MEX-076 HIST1H4L SNP Missense_Mutation 6 27841279 G A 38 75 BRCA BR-MEX-076 SRRT SNP Missense_Mutation 7 100483922 C T 31 97 BRCA BR-MEX-076 MLL3 SNP Missense_Mutation 7 151874320 T A 60 71 BRCA BR-MEX-076 MYO1G SNP Silent 7 45004035 G C 33 53 BRCA BR-MEX-076 COL14A1 SNP Silent 8 121240956 T C 60 55 BRCA BR-MEX-076 PDE7A SNP Missense_Mutation 8 66647072 G T 38 100 BRCA BR-MEX-076 DFNB31 SNP Missense_Mutation 9 117240877 G A 39 58 BRCA BR-MEX-076 ASB6 SNP Missense_Mutation 9 132401701 C T 31 73 BRCA BR-MEX-079 ZBTB40 SNP Missense_Mutation 1 22850840 T C 54 83 BRCA BR-MEX-079 DPH2 SNP Missense_Mutation 1 44437404 G A 35 84 BRCA BR-MEX-079 ALOX5 SNP Missense_Mutation 10 45935921 C T 31 83 BRCA BR-MEX-079 SLCO1B1 SNP Missense_Mutation 12 21358884 C T 18 78 BRCA BR-MEX-079 C1R SNP Silent 12 7188021 G A 33 49 BRCA BR-MEX-079 TUBGCP3 SNP Missense_Mutation 13 113200046 T C 49 44 BRCA BR-MEX-079 C14orf106 SNP Missense_Mutation 14 45686285 C G 20 48 BRCA BR-MEX-079 NR1D1 SNP Missense_Mutation 17 38252820 G C 41 61 BRCA BR-MEX-079 TOB1 SNP Missense_Mutation 17 48940457 C G 29 100 BRCA BR-MEX-079 CA4 SNP Missense_Mutation 17 58235068 G C 33 60 BRCA BR-MEX-079 CA4 SNP Splice_Site 17 58235643 G C 33 69 BRCA BR-MEX-079 CA4 SNP Missense_Mutation 17 58235754 G A 45 81 BRCA BR-MEX-079 ANKRD27 SNP Missense_Mutation 19 33130281 C T 28 51 BRCA BR-MEX-079 KCNC3 SNP Silent 19 50824019 C T 23 37 BRCA BR-MEX-079 ZNF470 SNP Silent 19 57089897 C T 23 31 BRCA BR-MEX-079 ZNF548 SNP Missense_Mutation 19 57910576 G T 42 53 BRCA BR-MEX-079 TTN SNP Nonsense_Mutation 2 179413852 G T 45 87 BRCA BR-MEX-079 ERBB4 SNP Missense_Mutation 2 212295779 G A 46 100 BRCA BR-MEX-079 WNT6 SNP Missense_Mutation 2 219735954 C T 19 70 BRCA BR-MEX-079 CUL3 SNP Missense_Mutation 2 225378312 G C 33 78 BRCA BR-MEX-079 CPXM1 SNP Silent 20 2775013 C T 24 53 BRCA BR-MEX-079 SRC SNP Silent 20 36024599 C T 19 48 BRCA BR-MEX-079 PLCG1 SNP Missense_Mutation 20 39788290 C G 19 68 BRCA BR-MEX-079 DGCR8 SNP Silent 22 20094217 G C 44 58 BRCA BR-MEX-079 PCDHGA1 SNP Silent 5 140711919 C T 19 49 BRCA BR-MEX-079 MFAP3 SNP Missense_Mutation 5 153432607 C G 32 65 BRCA BR-MEX-079 MLLT4 SNP Missense_Mutation 6 168352469 C T 27 47 BRCA BR-MEX-079 OR2J2 SNP Silent 6 29142018 C T 29 49 BRCA BR-MEX-079 FLOT1 SNP Missense_Mutation 6 30697915 G T 36 58 BRCA BR-MEX-079 CADPS2 SNP Missense_Mutation 7 122303521 G A 38 76 BRCA BR-MEX-079 SAMD9L SNP Missense_Mutation 7 92761293 T A 56 46 BRCA BR-MEX-079 MYST3 SNP Missense_Mutation 8 41832263 C G 32 98 BRCA BR-MEX-080 PKLR SNP Missense_Mutation 1 155262972 C A 21 90 BRCA BR-MEX-080 SERPINA13 SNP Silent 14 95107786 G C 46 53 BRCA BR-MEX-080 C15orf24 SNP Silent 15 34393816 G A 37 56 BRCA BR-MEX-080 RNF165 SNP Missense_Mutation 18 44013381 C T 30 99 BRCA BR-MEX-080 ATP8B3 SNP Splice_site 19 1796712 G T 47 51 BRCA BR-MEX-080 CHD6 SNP Missense_Mutation 20 40076550 C T 29 74 BRCA BR-MEX-080 SYCP2 SNP Nonsense_Mutation 20 58470563 T A 53 45 BRCA BR-MEX-080 YTHDF1 SNP Missense_Mutation 20 61834903 G A 45 99 BRCA BR-MEX-082 OVGP1 SNP Missense 1 111968089 G C 34 50 BRCA BR-MEX-082 BCL9 SNP Missense 1 147092545 C A 22 77 BRCA BR-MEX-082 PYHIN1 SNP Synonymous 1 158908938 G T 42 44 BRCA BR-MEX-082 FAIM3 SNP Missense 1 207083674 T A 49 43 BRCA BR-MEX-082 AHCTF1 SNP Missense 1 247013167 T A 60 47 BRCA BR-MEX-082 TTC39A SNP Missense 1 51754596 T G 50 73 BRCA BR-MEX-082 CELF2 DNP Missense 10 11308573 TC CA 58 93 BRCA BR-MEX-082 SFMBT2 SNP Missense 10 7327874 C G 19 54 BRCA BR-MEX-082 POLR3A SNP Missense 10 79737244 C G 17 64 BRCA BR-MEX-082 CTNND1 SNP Missense 11 57559072 T C 55 88 BRCA BR-MEX-082 ITPR2 SNP Missense 12 26875391 C A 30 98 BRCA BR-MEX-082 KCNA6 SNP Missense 12 4920318 G A 42 98 BRCA BR-MEX-082 COPZ1 SNP Missense 12 54736018 A G 3 87 BRCA BR-MEX-082 CDKN3 DEL In_frame_Del 14 54884655 ATACAGACC - 4 84 BRCA BR-MEX-082 DLST INS Frame_Shift_Ins 14 75367834 - G 27 24 BRCA BR-MEX-082 DIO2 SNP Missense 14 80669502 C A 25 100 BRCA BR-MEX-082 THBS1 SNP Synonymous 15 39882794 C T 19 28 BRCA BR-MEX-082 PTPLAD1 SNP Missense 15 65856634 C T 25 99 BRCA BR-MEX-082 PRKCB SNP Missense 16 24192164 C A 26 100 BRCA BR-MEX-082 AMFR INS Frame_Shift_Ins 16 56442017 - GAGA 27 46 BRCA BR-MEX-082 SREBF1 DEL In_frame_Del 17 17722977 CCCCTGGCGGGG - 18 58 BRCA BR-MEX-082 TBX21 SNP Nonsense 17 45822279 C G 20 52 BRCA BR-MEX-082 MYO15B SNP Missense 17 73587276 C T 29 75 BRCA BR-MEX-082 APCDD1 SNP Missense 18 10487850 A G 9 87 BRCA BR-MEX-082 ALPK2 SNP Missense 18 56204606 C G 30 46 BRCA BR-MEX-082 TYMS SNP Missense 18 672975 T A 52 90 BRCA BR-MEX-082 GATAD2A SNP Missense 19 19576209 C A 22 55 BRCA BR-MEX-082 SLC7A10 SNP Missense 19 33706778 C T 19 50 BRCA BR-MEX-082 PSG9 SNP Missense 19 43766108 A C 4 43 BRCA BR-MEX-082 LILRA2 SNP Missense 19 55089013 C G 31 45 BRCA BR-MEX-082 IL1RL1 SNP Missense 2 102959580 C A 17 25 BRCA BR-MEX-082 UGT1A8 SNP Missense 2 234526537 G C 44 76 BRCA BR-MEX-082 ACTG2 SNP Missense 2 74140693 G A 38 97 BRCA BR-MEX-082 FAHD2B INS Frame_Shift_Ins 2 97751497 - C 62 55 BRCA BR-MEX-082 ZFP64 SNP Missense 20 50769895 C T 23 100 BRCA BR-MEX-082 CTCFL SNP Missense 20 56071378 C G 26 53 BRCA BR-MEX-082 TPTE SNP Missense 21 10951372 T C 52 24 BRCA BR-MEX-082 MTM1 SNP Missense 23 149783096 T A 59 65 BRCA BR-MEX-082 SPSB4 SNP Missense 3 140851037 T C 58 51 BRCA BR-MEX-082 IGSF10 SNP Missense 3 151171257 G T 44 48 BRCA BR-MEX-082 WDR53 SNP Missense 3 196281555 A C 9 91 BRCA BR-MEX-082 TOP2B SNP Nonsense 3 25662180 C T 21 100 BRCA BR-MEX-082 ARPC4 SNP Synonymous 3 9896269 A T 6 51 BRCA BR-MEX-082 ZNF330 SNP Missense 4 142152613 G T 47 100 BRCA BR-MEX-082 CDKN2AIP SNP Synonymous 4 184367593 G T 45 77 BRCA BR-MEX-082 EXOC1 SNP Missense 4 56726616 T G 58 89 BRCA BR-MEX-082 ABLIM2 DEL Frame_Shift_Del 4 7985031 CGAAT - 27 79 BRCA BR-MEX-082 PRKG2 SNP Missense 4 82058628 C T 19 100 BRCA BR-MEX-082 PCDHGA8 SNP Missense 5 140772870 G T 40 48 BRCA BR-MEX-082 DUSP1 SNP Splice_Site_SNP 5 172197163 C A 18 91 BRCA BR-MEX-082 RICTOR SNP Synonymous 5 38952392 G C 33 58 BRCA BR-MEX-082 DEPDC1B SNP Missense 5 59899366 A G 5 89 BRCA BR-MEX-082 MAP3K4 SNP Missense 6 161469725 A C 13 77 BRCA BR-MEX-082 OR2J3 SNP Synonymous 6 29079871 C T 18 57 BRCA BR-MEX-082 DPCR1 SNP Missense 6 30918445 C A 21 49 BRCA BR-MEX-082 DPCR1 SNP Missense 6 30918477 A T 3 50 BRCA BR-MEX-082 COL19A1 SNP Missense 6 70859771 G A 41 79 BRCA BR-MEX-082 KCP DEL In_frame_Del 7 128529074 CTC - 20 49 BRCA BR-MEX-082 MLL3 SNP Missense 7 151873719 G T 47 63 BRCA BR-MEX-082 ZNF713 SNP Missense 7 56007296 G C 41 88 BRCA BR-MEX-082 BAZ1B SNP Synonymous 7 72857108 C T 20 68 BRCA BR-MEX-082 WBSCR22 SNP Missense 7 73111938 C G 30 51 BRCA BR-MEX-082 RB1CC1 SNP Missense 8 53586672 A C 16 54 BRCA BR-MEX-082 TERF1 SNP Missense 8 73951368 G C 33 48 BRCA BR-MEX-082 OR13C2 SNP Splice_site 9 107367908 T C 52 55 BRCA BR-MEX-082 COL5A1 SNP Synonymous 9 137734038 C T 31 54 BRCA BR-MEX-082 SEC16A SNP Synonymous 9 139369377 A T 11 50 BRCA BR-MEX-082 PAX5 SNP Missense 9 36846895 G C 44 69 BRCA BR-MEX-082 KIAA2026 SNP Missense 9 5920273 C T 28 82 BRCA BR-MEX-083 CTBS SNP Missense_Mutation 1 85035691 A T 12 64 BRCA BR-MEX-083 PITRM1 SNP Missense_Mutation 10 3185630 C T 19 59 BRCA BR-MEX-083 CRTAC1 SNP Missense_Mutation 10 99667781 G T 38 100 BRCA BR-MEX-083 RASSF8 SNP Nonsense_Mutation 12 26217464 G A 47 96 BRCA BR-MEX-083 NOD2 SNP Missense_Mutation 16 50733697 C A 18 56 BRCA BR-MEX-083 RUNDC3A SNP Missense_Mutation 17 42389988 C A 26 93 BRCA BR-MEX-083 MYBPC2 SNP Missense_Mutation 19 50951610 C T 27 56 BRCA BR-MEX-083 PDE1A SNP Missense_Mutation 2 183104997 C T 29 84 BRCA BR-MEX-083 C2orf71 SNP Silent 2 29294461 C A 21 47 BRCA BR-MEX-083 NFATC2 SNP Missense_Mutation 20 50158974 C G 26 53 BRCA BR-MEX-083 SLC6A8 SNP Missense_Mutation 23 152958807 C A 17 81 BRCA BR-MEX-083 PIK3CA SNP Missense_Mutation 3 178936082 G C 45 98 BRCA BR-MEX-083 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA BR-MEX-083 UST SNP Missense_Mutation 6 149285692 G A 38 100 BRCA BR-MEX-083 SHH SNP Missense_Mutation 7 155599092 C T 31 93 BRCA BR-MEX-083 SLC27A4 SNP Missense_Mutation 9 131117422 A T 3 87 BRCA BR-MEX-085 HORMAD1 SNP Splice_Site 1 150692015 C G 24 67 BRCA BR-MEX-085 DISC1 SNP Missense_Mutation 1 231829724 G A 37 41 BRCA BR-MEX-085 OR52B4 SNP Missense_Mutation 11 4389164 G A 42 84 BRCA BR-MEX-085 PRB2 SNP Silent 12 11545992 T G 59 65 BRCA BR-MEX-085 TP53 SNP Missense_Mutation 17 7577120 C T 19 94 BRCA BR-MEX-085 CBLN4 SNP Missense_Mutation 20 54575811 T A 56 63 BRCA BR-MEX-085 TBC1D25 SNP Missense_Mutation 23 48417682 A T 11 84 BRCA BR-MEX-085 RASA2 SNP Missense_Mutation 3 141289831 G A 48 68 BRCA BR-MEX-085 CDH9 SNP Missense_Mutation 5 26886144 G T 45 99 BRCA BR-MEX-085 DBNL SNP Missense_Mutation 7 44098543 A T 11 51 BRCA BR-MEX-085 FREM1 SNP Nonsense_Mutation 9 14824909 C A 30 99 BRCA BR-MEX-094 FBXO34 SNP Missense_Mutation 14 55817665 A G 6 66 BRCA BR-MEX-094 RYR3 SNP Missense_Mutation 15 33952543 G A 40 76 BRCA BR-MEX-094 ZNF592 SNP Missense_Mutation 15 85326423 C G 32 52 BRCA BR-MEX-094 MSLNL SNP Missense_Mutation 16 824957 C T 27 59 BRCA BR-MEX-094 ERBB2 SNP Missense_Mutation 17 37868208 C T 30 84 BRCA BR-MEX-094 MPO SNP Silent 17 56350896 G A 40 41 BRCA BR-MEX-094 EIF4A1 SNP Splice_site 17 7476181 C T 23 75 BRCA BR-MEX-094 TP53 SNP Splice_Site 17 7577498 C T 18 92 BRCA BR-MEX-094 BARD1 SNP Silent 2 215593598 G A 40 41 BRCA BR-MEX-094 SLC8A1 SNP Missense_Mutation 2 40342532 C T 23 98 BRCA BR-MEX-094 PKDREJ SNP Missense_Mutation 22 46658562 C T 19 58 BRCA BR-MEX-094 ARMCX1 SNP Missense_Mutation 23 100807953 G T 48 56 BRCA BR-MEX-094 EGFL6 SNP Missense_Mutation 23 13635996 C G 24 68 BRCA BR-MEX-094 OGFRL1 SNP Missense_Mutation 6 72011310 C T 19 54 BRCA BR-MEX-094 CALD1 SNP Silent 7 134613550 G C 43 50 BRCA BR-MEX-094 FAM188B SNP Missense_Mutation 7 30831018 T G 51 37 BRCA BR-MEX-094 SDK1 SNP Missense_Mutation 7 4153028 C T 19 74 BRCA BR-MEX-095 PDE4DIP SNP Silent 1 144917846 T C 62 32 BRCA BR-MEX-095 PGLYRP4 SNP Missense_Mutation 1 153312954 C T 23 59 BRCA BR-MEX-095 ACTL8 SNP Silent 1 18149722 C A 29 55 BRCA BR-MEX-095 FAM129A SNP Silent 1 184764813 G A 39 47 BRCA BR-MEX-095 GRHL3 SNP Silent 1 24663056 G T 48 54 BRCA BR-MEX-095 HPSE2 SNP Nonsense_Mutation 10 100219336 G A 39 69 BRCA BR-MEX-095 FAM171A1 SNP Missense_Mutation 10 15255726 G T 41 76 BRCA BR-MEX-095 HNRNPF SNP Missense_Mutation 10 43882356 C G 32 94 BRCA BR-MEX-095 C10orf18 SNP Splice_site 10 5762718 A G 10 51 BRCA BR-MEX-095 ZW10 SNP Missense_Mutation 11 113618285 G T 33 65 BRCA BR-MEX-095 FAM55D SNP Missense_Mutation 11 114453117 G C 33 55 BRCA BR-MEX-095 AP2A2 SNP Missense_Mutation 11 992650 G A 37 94 BRCA BR-MEX-095 FOXN4 SNP Silent 12 109723308 G C 39 40 BRCA BR-MEX-095 KSR2 SNP Missense_Mutation 12 118298119 C A 31 69 BRCA BR-MEX-095 P2RX2 SNP Silent 12 133197592 T A 59 43 BRCA BR-MEX-095 KIAA0528 SNP Missense_Mutation 12 22680778 C T 29 100 BRCA BR-MEX-095 CAPRIN2 SNP Missense_Mutation 12 30906385 G T 46 76 BRCA BR-MEX-095 GALNT8 SNP Missense_Mutation 12 4870192 C A 17 53 BRCA BR-MEX-095 ERBB3 SNP Missense_Mutation 12 56492633 A G 11 92 BRCA BR-MEX-095 CHD4 SNP Nonsense_Mutation 12 6682372 C A 32 78 BRCA BR-MEX-095 C13orf28 SNP Missense_Mutation 13 113030776 C T 23 58 BRCA BR-MEX-095 LPCAT4 SNP Missense_Mutation 15 34651440 C T 27 61 BRCA BR-MEX-095 TCF12 SNP Missense_Mutation 15 57565320 G A 38 98 BRCA BR-MEX-095 LINGO1 SNP Missense_Mutation 15 77906689 G C 36 70 BRCA BR-MEX-095 ERBB2 SNP Missense_Mutation 17 37868208 C T 30 84 BRCA BR-MEX-095 ACE SNP Nonsense_Mutation 17 61573804 C T 21 65 BRCA BR-MEX-095 TP53 SNP Missense_Mutation 17 7577141 C T 30 95 BRCA BR-MEX-095 KRI1 SNP Missense_Mutation 19 10671066 C T 23 92 BRCA BR-MEX-095 OR7A5 SNP Missense_Mutation 19 14938936 G T 34 34 BRCA BR-MEX-095 ZNF222 SNP Missense_Mutation 19 44537137 G A 38 52 BRCA BR-MEX-095 TULP2 SNP Missense_Mutation 19 49399708 C T 30 59 BRCA BR-MEX-095 SIGLEC12 SNP Missense_Mutation 19 52003444 A T 7 55 BRCA BR-MEX-095 ZNF549 SNP Nonsense_Mutation 19 58049504 C T 31 37 BRCA BR-MEX-095 EVI5L SNP Missense_Mutation 19 7928128 C G 23 72 BRCA BR-MEX-095 SULT1C4 SNP Missense_Mutation 2 108999892 G A 45 82 BRCA BR-MEX-095 PCDP1 SNP Silent 2 120388157 G A 48 49 BRCA BR-MEX-095 ARHGAP25 SNP Nonsense_Mutation 2 69049955 C T 19 59 BRCA BR-MEX-095 RBM11 SNP Silent 21 15599275 C G 23 42 BRCA BR-MEX-095 SLC5A4 SNP Splice_Site 22 32644729 C G 18 86 BRCA BR-MEX-095 ZMAT1 SNP Missense_Mutation 23 101152931 G A 45 75 BRCA BR-MEX-095 CHRDL1 SNP Missense_Mutation 23 109924783 C A 32 52 BRCA BR-MEX-095 ARX SNP Missense_Mutation 23 25031063 G T 40 78 BRCA BR-MEX-095 FAM47C SNP Missense_Mutation 23 37027094 A G 3 51 BRCA BR-MEX-095 BCOR SNP Missense_Mutation 23 39930324 C A 28 60 BRCA BR-MEX-095 ATG7 SNP Silent 3 11468328 T C 61 56 BRCA BR-MEX-095 KLHL6 SNP Missense_Mutation 3 183217608 G A 37 96 BRCA BR-MEX-095 TNK2 SNP Missense_Mutation 3 195605937 C T 23 98 BRCA BR-MEX-095 KIAA0226 SNP Nonsense_Mutation 3 197422804 G C 45 100 BRCA BR-MEX-095 COL7A1 SNP Splice_site 3 48617101 C A 22 88 BRCA BR-MEX-095 MST1 SNP Missense_Mutation 3 49723762 C G 32 68 BRCA BR-MEX-095 MAGI1 SNP Missense_Mutation 3 65361620 C A 26 99 BRCA BR-MEX-095 PLK4 SNP Splice_Site 4 128813519 G A 33 97 BRCA BR-MEX-095 ABLIM2 SNP Splice_site 4 8009770 C G 29 59 BRCA BR-MEX-095 FYB SNP Missense_Mutation 5 39134377 G A 43 51 BRCA BR-MEX-095 LAMA4 SNP Silent 6 112430775 C G 29 56 BRCA BR-MEX-095 COL12A1 SNP Missense_Mutation 6 75847269 G C 45 72 BRCA BR-MEX-095 CLIP2 SNP Silent 7 73771789 C G 29 53 BRCA BR-MEX-095 SEMA3C SNP Silent 7 80447714 G T 41 48 BRCA BR-MEX-095 PRKDC SNP Silent 8 48691173 G C 41 34 BRCA BR-MEX-095 PAG1 SNP Silent 8 81905433 G A 38 35 BRCA BR-MEX-095 DAB2IP SNP Missense_Mutation 9 124521225 G A 45 97 BRCA BR-MEX-095 TMEM215 SNP Silent 9 32784316 C T 31 48 BRCA BR-MEX-095 APTX SNP Missense_Mutation 9 32973566 T G 51 82 BRCA BR-MEX-095 SMC5 SNP Missense_Mutation 9 72901163 T G 51 60 BRCA BR-MEX-095 PRUNE2 SNP Missense_Mutation 9 79322661 G T 44 54 BRCA BR-MEX-098 ERO1LB DEL Splice_Site_Del 1 236380654 CTGTTGGTATGAATCACAGAAAGTCCT - 20 53 BRCA BR-MEX-098 KIF26B SNP Missense_Mutation 1 245847617 G A 38 74 BRCA BR-MEX-098 SLC44A3 SNP Silent 1 95322913 C T 27 37 BRCA BR-MEX-098 KIAA1274 SNP Missense_Mutation 10 72294580 G T 37 59 BRCA BR-MEX-098 GATA3 DEL Frame_Shift_Del 10 8115942 T - 56 88 BRCA BR-MEX-098 OR51A2 SNP Missense 11 4976744 A G 8 52 BRCA BR-MEX-098 LRP5 SNP Missense 11 68154117 G A 38 82 BRCA BR-MEX-098 MYF5 SNP Silent 12 81110944 G A 38 37 BRCA BR-MEX-098 NALCN SNP Missense_Mutation 13 101714331 G A 38 85 BRCA BR-MEX-098 GOLGA9P SNP Missense 15 23260865 G C 41 57 BRCA BR-MEX-098 HERC2 SNP Missense 15 28447562 A G 9 79 BRCA BR-MEX-098 C15orf33 SNP Splice_site 15 49659803 C T 27 50 BRCA BR-MEX-098 WFIKKN2 SNP Missense_Mutation 17 48917004 C A 25 100 BRCA BR-MEX-098 UNC13D SNP Missense 17 73828973 G A 43 48 BRCA BR-MEX-098 WBP2 SNP Nonsense_Mutation 17 73845688 C A 22 98 BRCA BR-MEX-098 FAM38B SNP Synonymous 18 10855509 C A 17 51 BRCA BR-MEX-098 DCC SNP Missense_Mutation 18 50683813 G A 38 92 BRCA BR-MEX-098 KIAA0802 SNP Missense 18 8825613 C A 17 97 BRCA BR-MEX-098 NOTCH3 SNP Silent 19 15276778 A C 11 45 BRCA BR-MEX-098 ZNF91 SNP Nonsense 19 23542845 G C 45 47 BRCA BR-MEX-098 CREB3L3 SNP Missense_Mutation 19 4171399 C A 26 60 BRCA BR-MEX-098 FPR2 SNP Nonsense_Mutation 19 52272360 G A 47 89 BRCA BR-MEX-098 CCDC138 SNP Missense_Mutation 2 109411076 G C 48 51 BRCA BR-MEX-098 PLEKHA3 SNP Missense_Mutation 2 179365814 T A 57 43 BRCA BR-MEX-098 SF3B1 SNP Missense_Mutation 2 198266834 T C 62 93 BRCA BR-MEX-098 TRPC4AP SNP Missense_Mutation 20 33603917 T C 56 67 BRCA BR-MEX-098 TOM1 SNP Missense_Mutation 22 35719040 A G 3 91 BRCA BR-MEX-098 CXorf22 SNP Missense_Mutation 23 35937995 G A 40 35 BRCA BR-MEX-098 TAF1 SNP Missense_Mutation 23 70612428 G T 46 97 BRCA BR-MEX-098 PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA BR-MEX-098 CCKAR SNP Missense_Mutation 4 26483685 C T 23 40 BRCA BR-MEX-098 TCP10 SNP Missense 6 167786686 C T 27 38 BRCA BR-MEX-098 KIAA0319 SNP Missense_Mutation 6 24559373 C A 17 53 BRCA BR-MEX-098 HIST1H2AJ SNP Missense_Mutation 6 27782506 C T 21 82 BRCA BR-MEX-098 RIPK1 SNP Missense_Mutation 6 3113535 G A 37 68 BRCA BR-MEX-098 KLHL31 SNP Missense_Mutation 6 53519484 C T 23 89 BRCA BR-MEX-098 LGSN SNP Missense_Mutation 6 63995573 A T 12 55 BRCA BR-MEX-098 FAM135A DEL Frame_Shift_Del 6 71187017 TA - 53 92 BRCA BR-MEX-098 ZAN SNP Missense 7 100349931 C A 22 53 BRCA BR-MEX-098 TMED4 SNP Missense_Mutation 7 44621675 T A 54 86 BRCA BR-MEX-098 COL22A1 SNP Missense_Mutation 8 139833618 C T 31 99 BRCA BR-MEX-098 CRB2 SNP Silent 9 126125292 G T 48 57 BRCA BR-MEX-105 FCRL3 SNP Silent 1 157667195 C G 25 51 BRCA BR-MEX-105 CACNA1E SNP Missense_Mutation 1 181480581 C G 32 64 BRCA BR-MEX-105 PRDM16 SNP Silent 1 3328135 C T 22 49 BRCA BR-MEX-105 MKI67 SNP Missense_Mutation 10 129900851 C G 29 45 BRCA BR-MEX-105 CYP2C8 SNP Missense_Mutation 10 96802720 C T 20 52 BRCA BR-MEX-105 STRA6 SNP Missense_Mutation 15 74486211 C A 30 57 BRCA BR-MEX-105 LPAR2 SNP Missense_Mutation 19 19737915 T G 60 85 BRCA BR-MEX-105 ZNF569 SNP Silent 19 37905041 T C 51 63 BRCA BR-MEX-105 KRTAP19-6 SNP Silent 21 31914078 A G 6 53 BRCA BR-MEX-105 BCOR SNP Missense_Mutation 23 39933387 C A 28 51 BRCA BR-MEX-105 CHRD SNP Silent 3 184100495 C T 29 52 BRCA BR-MEX-105 MTMR14 SNP Missense_Mutation 3 9730634 A G 3 57 BRCA BR-MEX-105 CPOX SNP Missense_Mutation 3 98300290 C T 32 94 BRCA BR-MEX-105 SH3TC1 SNP Missense_Mutation 4 8230329 G C 37 65 BRCA BR-MEX-105 DNAH8 SNP Missense_Mutation 6 38821012 T G 52 21 BRCA BR-MEX-105 HECW1 SNP Missense_Mutation 7 43484702 C T 27 52 BRCA BR-MEX-105 ZNF34 SNP Silent 8 145999704 G C 45 44 BRCA BR-MEX-105 PRDM14 SNP Silent 8 70980474 C G 29 55 BRCA BR-MEX-106 FCGR1A DEL In_frame_Del 1 149763018 AAG - 1 54 BRCA BR-MEX-106 DAP3 SNP Missense_Mutation 1 155699123 G A 41 88 BRCA BR-MEX-106 PAFAH2 SNP Missense_Mutation 1 26308959 G A 38 53 BRCA BR-MEX-106 RBM20 SNP Missense 10 112595674 G A 42 53 BRCA BR-MEX-106 GATA3 INS Frame_Shift_Ins 10 8115715 - GGGTC 55 90 BRCA BR-MEX-106 RHOG SNP Silent 11 3848964 C T 27 44 BRCA BR-MEX-106 CSAD SNP Nonsense 12 53555069 C T 26 92 BRCA BR-MEX-106 SACS INS Frame_Shift_Ins 13 23949297 - A 41 51 BRCA BR-MEX-106 C14orf23 SNP Nonsense 14 29242584 C T 23 44 BRCA BR-MEX-106 C14orf115 SNP Missense_Mutation 14 74825336 G A 42 50 BRCA BR-MEX-106 DTWD1 SNP Missense_Mutation 15 49935572 C T 27 100 BRCA BR-MEX-106 KIAA0182 INS Frame_Shift_Ins 16 85699738 - GAAGGCC 11 86 BRCA BR-MEX-106 NCOR1 DEL Frame_Shift_Del 17 15960904 G - 47 97 BRCA BR-MEX-106 GRN DEL In_frame_Del 17 42429429 CGTGTGTAG - 19 36 BRCA BR-MEX-106 VEZF1 SNP Missense_Mutation 17 56051995 G A 43 77 BRCA BR-MEX-106 SCN4A SNP Silent 17 62022987 G A 40 52 BRCA BR-MEX-106 FADS6 DEL Splice_site 17 72889693 TGGACTCTG - 51 51 BRCA BR-MEX-106 RPTOR SNP Missense_Mutation 17 78831639 C T 31 96 BRCA BR-MEX-106 RNF125 SNP Missense_Mutation 18 29645881 G A 40 51 BRCA BR-MEX-106 LRRC30 SNP Missense_Mutation 18 7231390 T G 60 50 BRCA BR-MEX-106 OBSL1 SNP Missense_Mutation 2 220432999 C G 29 100 BRCA BR-MEX-106 RPIA SNP Silent 2 89034083 C T 31 49 BRCA BR-MEX-106 MORC4 SNP Missense_Mutation 23 106185178 C T 29 74 BRCA BR-MEX-106 COL4A5 SNP Missense_Mutation 23 107850033 G A 41 96 BRCA BR-MEX-106 CCDC120 INS Frame_Shift_Ins 23 48925503 - C 42 62 BRCA BR-MEX-106 CAPN7 SNP Silent 3 15292441 A G 4 50 BRCA BR-MEX-106 MUC4 SNP Missense 3 195508204 G A 45 55 BRCA BR-MEX-106 TNK2 SNP Missense_Mutation 3 195594900 G A 37 62 BRCA BR-MEX-106 DLG1 SNP Missense_Mutation 3 196921444 T A 50 86 BRCA BR-MEX-106 GK3P SNP Missense 4 166199287 T G 56 69 BRCA BR-MEX-106 TXNDC15 SNP Synonymous 5 134223561 C T 28 47 BRCA BR-MEX-106 TCOF1 SNP Synonymous 5 149754266 C T 22 54 BRCA BR-MEX-106 DUSP22 SNP Missense_Mutation 6 311936 C T 21 79 BRCA BR-MEX-106 DNAH8 SNP Missense_Mutation 6 38883028 G A 45 83 BRCA BR-MEX-106 COL19A1 DEL Frame_Shift_Del 6 70861304 TT - 56 53 BRCA BR-MEX-106 TMEM140 SNP Missense 7 134849530 T C 59 74 BRCA BR-MEX-106 MGAM SNP Missense_Mutation 7 141722117 C T 28 50 BRCA BR-MEX-106 MAD1L1 SNP Missense_Mutation 7 2020140 T C 55 51 BRCA BR-MEX-106 CSMD3 SNP Missense_Mutation 8 113349050 C T 21 100 BRCA BR-MEX-106 TMEM203 SNP Missense_Mutation 9 140099755 C G 30 89 BRCA BR-MEX-110 CD1A SNP Silent 1 158227245 G A 39 43 BRCA BR-MEX-110 AGRN SNP Missense_Mutation 1 957631 C A 26 52 BRCA BR-MEX-110 OAT SNP Missense_Mutation 10 126092450 C T 32 96 BRCA BR-MEX-110 MYO3A SNP Silent 10 26377209 T C 61 53 BRCA BR-MEX-110 PRKCQ SNP Silent 10 6472787 C T 19 29 BRCA BR-MEX-110 C11orf41 SNP Nonsense_Mutation 11 33667450 C A 19 52 BRCA BR-MEX-110 OR5W2 SNP Missense_Mutation 11 55681295 A C 7 52 BRCA BR-MEX-110 RBM4 SNP Silent 11 66407245 C G 32 48 BRCA BR-MEX-110 MVK SNP Missense_Mutation 12 110013842 C T 23 54 BRCA BR-MEX-110 ATP12A SNP Silent 13 25272939 C A 24 57 BRCA BR-MEX-110 FRY SNP Silent 13 32836528 A G 2 56 BRCA BR-MEX-110 Unknown SNP Missense_Mutation 14 38311407 A C 1 54 BRCA BR-MEX-110 ABCD4 SNP Silent 14 74759565 G T 45 61 BRCA BR-MEX-110 AEN SNP Silent 15 89172498 G A 38 39 BRCA BR-MEX-110 SCNN1B SNP Silent 16 23359974 C T 23 26 BRCA BR-MEX-110 COL1A1 SNP Missense_Mutation 17 48263689 C A 31 93 BRCA BR-MEX-110 RBBP8 SNP Silent 18 20573086 A G 2 55 BRCA BR-MEX-110 MPND SNP Missense_Mutation 19 4345760 G A 37 88 BRCA BR-MEX-110 NLRP11 SNP Silent 19 56320869 T C 57 26 BRCA BR-MEX-110 IL18R1 SNP Missense_Mutation 2 103003419 C A 19 38 BRCA BR-MEX-110 TOX2 SNP Missense_Mutation 20 42694464 C T 23 69 BRCA BR-MEX-110 PNPLA3 SNP Splice_site 22 44328758 C T 27 85 BRCA BR-MEX-110 DOCK11 SNP Missense_Mutation 23 117739268 G C 37 63 BRCA BR-MEX-110 ZCCHC12 SNP Missense_Mutation 23 117959515 C T 27 65 BRCA BR-MEX-110 MAP3K15 SNP Missense_Mutation 23 19410543 G A 39 82 BRCA BR-MEX-110 MAGEB6 SNP Missense_Mutation 23 26212102 G A 38 41 BRCA BR-MEX-110 LPAR4 SNP Missense_Mutation 23 78010679 C A 26 91 BRCA BR-MEX-110 TBX22 SNP Missense_Mutation 23 79281184 G A 41 93 BRCA BR-MEX-110 CBLB SNP Silent 3 105464775 G A 46 78 BRCA BR-MEX-110 CASR SNP Missense_Mutation 3 122002828 C T 19 78 BRCA BR-MEX-110 TMCC1 SNP Missense_Mutation 3 129546960 C T 27 35 BRCA BR-MEX-110 PLSCR1 SNP Missense_Mutation 3 146246595 G T 43 54 BRCA BR-MEX-110 TRAK1 SNP Missense_Mutation 3 42226205 G T 38 97 BRCA BR-MEX-110 BEND4 SNP Missense_Mutation 4 42145696 G A 37 96 BRCA BR-MEX-110 MAN2B2 SNP Missense_Mutation 4 6611009 C T 23 60 BRCA BR-MEX-110 CCDC158 SNP Missense_Mutation 4 77247057 G A 45 74 BRCA BR-MEX-110 SRFBP1 SNP Missense_Mutation 5 121356038 C T 32 56 BRCA BR-MEX-110 UNC5A SNP Silent 5 176301539 C T 31 51 BRCA BR-MEX-110 GHR SNP Missense_Mutation 5 42565980 G T 41 63 BRCA BR-MEX-110 PAPD7 SNP Silent 5 6749757 G A 40 46 BRCA BR-MEX-110 ACOT12 SNP Missense_Mutation 5 80640804 C T 31 43 BRCA BR-MEX-110 AKD1 SNP Nonsense_Mutation 6 109819063 G A 37 51 BRCA BR-MEX-110 HLA-DOB SNP Missense_Mutation 6 32782913 C T 23 51 BRCA BR-MEX-110 FLNC SNP Missense_Mutation 7 128484151 G A 38 85 BRCA BR-MEX-110 EPHA1 SNP Silent 7 143093557 C T 24 60 BRCA BR-MEX-110 IQCE SNP Missense_Mutation 7 2638189 C T 23 48 BRCA BR-MEX-110 EGFR SNP Missense_Mutation 7 55224495 G T 41 61 BRCA BR-MEX-110 SLCO5A1 SNP Silent 8 70591798 G A 47 52 BRCA BR-MEX-116 TOMM40L DEL Frame_Shift_Del 1 161197734 A - 6 77 BRCA BR-MEX-116 PIGR SNP Missense_Mutation 1 207110812 C T 29 56 BRCA BR-MEX-116 EPRS SNP Synonymous 1 220178634 C T 32 68 BRCA BR-MEX-116 DISP1 SNP Splice_site 1 223164090 G A 47 100 BRCA BR-MEX-116 NVL SNP Missense_Mutation 1 224495862 G A 45 87 BRCA BR-MEX-116 ZP4 SNP Silent 1 238046085 G T 47 52 BRCA BR-MEX-116 OR2T6 SNP Silent 1 248551773 C T 29 44 BRCA BR-MEX-116 ARID1A SNP Nonsense_Mutation 1 27101195 C T 29 98 BRCA BR-MEX-116 KIF2C SNP Missense_Mutation 1 45220512 G A 45 96 BRCA BR-MEX-116 INADL SNP Missense 1 62367004 G A 44 97 BRCA BR-MEX-116 GBP1 SNP Silent 1 89520886 G A 33 70 BRCA BR-MEX-116 BUB3 SNP Silent 10 124914520 C T 30 58 BRCA BR-MEX-116 DOCK1 SNP Missense_Mutation 10 129179603 A G 6 69 BRCA BR-MEX-116 ITGA8 SNP Splice_Site 10 15639299 C T 24 78 BRCA BR-MEX-116 NEBL SNP Missense_Mutation 10 21309096 C T 32 91 BRCA BR-MEX-116 ZMYND11 SNP Silent 10 285428 C T 22 47 BRCA BR-MEX-116 ZMIZ1 SNP Missense_Mutation 10 81052045 G C 34 96 BRCA BR-MEX-116 MUC6 SNP Missense_Mutation 11 1016190 G T 42 59 BRCA BR-MEX-116 KIAA1377 SNP Missense 11 101793413 G A 38 82 BRCA BR-MEX-116 MLL SNP Missense_Mutation 11 118348856 G T 48 100 BRCA BR-MEX-116 H2AFX SNP Silent 11 118965724 C T 31 44 BRCA BR-MEX-116 FANCF SNP Missense_Mutation 11 22647304 G A 45 82 BRCA BR-MEX-116 CHRM4 SNP Silent 11 46406881 G A 45 75 BRCA BR-MEX-116 OR4X1 SNP Missense_Mutation 11 48285974 G A 38 50 BRCA BR-MEX-116 MYEOV SNP Missense_Mutation 11 69062864 A T 12 41 BRCA BR-MEX-116 CLPB SNP Silent 11 72145420 G A 39 52 BRCA BR-MEX-116 HEPHL1 SNP Silent 11 93800771 C T 32 54 BRCA BR-MEX-116 YARS2 SNP Silent 12 32908452 C T 21 57 BRCA BR-MEX-116 ADAMTS20 SNP Missense_Mutation 12 43862484 C T 17 96 BRCA BR-MEX-116 ARID2 SNP Missense_Mutation 12 46123876 C T 29 61 BRCA BR-MEX-116 MAP3K12 SNP Silent 12 53877465 C T 32 65 BRCA BR-MEX-116 EDNRB SNP Synonymous 13 78493565 G A 37 42 BRCA BR-MEX-116 DYNC1H1 SNP Missense_Mutation 14 102508021 A G 8 80 BRCA BR-MEX-116 POTEG SNP Missense_Mutation 14 19573107 C T 32 57 BRCA BR-MEX-116 CLEC14A SNP Missense_Mutation 14 38723949 C T 31 56 BRCA BR-MEX-116 SOS2 SNP Missense_Mutation 14 50626509 G C 48 99 BRCA BR-MEX-116 KBTBD13 SNP Missense 15 65369284 G A 38 59 BRCA BR-MEX-116 FES SNP Silent 15 91437224 C T 29 67 BRCA BR-MEX-116 MCTP2 SNP Nonsense_Mutation 15 94913361 C T 17 87 BRCA BR-MEX-116 IGF1R SNP Missense_Mutation 15 99478058 G A 40 63 BRCA BR-MEX-116 NOXO1 SNP Missense_Mutation 16 2029448 C T 32 66 BRCA BR-MEX-116 PKD1 SNP Silent 16 2168840 C T 29 55 BRCA BR-MEX-116 CLDN6 SNP Missense_Mutation 16 3065539 C T 26 55 BRCA BR-MEX-116 MT1E SNP Missense_Mutation 16 56660416 G A 33 48 BRCA BR-MEX-116 NUP93 SNP Missense_Mutation 16 56782199 G A 45 100 BRCA BR-MEX-116 USP22 SNP Silent 17 20907574 G A 45 75 BRCA BR-MEX-116 UNC45B SNP Missense_Mutation 17 33513565 A T 1 92 BRCA BR-MEX-116 MYO19 SNP Missense_Mutation 17 34871826 G A 40 95 BRCA BR-MEX-116 FSCN2 SNP Silent 17 79503256 G A 33 73 BRCA BR-MEX-116 HGS SNP Missense_Mutation 17 79668622 G A 37 82 BRCA BR-MEX-116 RIOK3 SNP Missense_Mutation 18 21033426 C T 31 76 BRCA BR-MEX-116 TGIF1 SNP Silent 18 3452116 C T 32 50 BRCA BR-MEX-116 LMAN1 SNP Nonsense_Mutation 18 57021755 G A 45 97 BRCA BR-MEX-116 DOT1L SNP Silent 19 2222258 C T 23 28 BRCA BR-MEX-116 EML2 SNP Splice_Site 19 46128077 C G 32 91 BRCA BR-MEX-116 NOVA2 SNP Silent 19 46443253 C T 25 53 BRCA BR-MEX-116 HCN2 SNP Silent 19 605114 C T 29 49 BRCA BR-MEX-116 OR2Z1 SNP Missense_Mutation 19 8841526 C G 32 50 BRCA BR-MEX-116 PDK1 SNP Missense_Mutation 2 173431632 C T 32 86 BRCA BR-MEX-116 CPS1 SNP Silent 2 211502450 G A 45 64 BRCA BR-MEX-116 BOK SNP Missense_Mutation 2 242511794 G A 38 70 BRCA BR-MEX-116 OTOF SNP Silent 2 26705392 G A 33 59 BRCA BR-MEX-116 CCDC88A SNP Missense_Mutation 2 55555500 A T 4 94 BRCA BR-MEX-116 FBXO48 SNP Missense_Mutation 2 68691979 G A 41 89 BRCA BR-MEX-116 HTRA2 SNP Missense_Mutation 2 74757203 C T 31 56 BRCA BR-MEX-116 RNF160 SNP Silent 21 30329699 C T 31 48 BRCA BR-MEX-116 DYRK1A SNP Missense_Mutation 21 38877857 C T 32 87 BRCA BR-MEX-116 PDE9A SNP Missense_Mutation 21 44171278 C T 30 78 BRCA BR-MEX-116 SUSD2 SNP Missense_Mutation 22 24582104 C G 26 92 BRCA BR-MEX-116 UQCR10 SNP Nonsense_Mutation 22 30163499 C T 29 78 BRCA BR-MEX-116 ATF4 SNP Splice_site 22 39917453 G A 45 80 BRCA BR-MEX-116 ADSL SNP Missense_Mutation 22 40762488 G A 45 58 BRCA BR-MEX-116 MCHR1 SNP Missense_Mutation 22 41075673 C T 31 54 BRCA BR-MEX-116 TRABD SNP Missense_Mutation 22 50636364 T A 53 88 BRCA BR-MEX-116 CHKB SNP Silent 22 51018794 G A 41 53 BRCA BR-MEX-116 CSTF2 SNP Missense_Mutation 23 100081737 G T 34 77 BRCA BR-MEX-116 RAB40A DEL Frame_Shift_Del 23 102755078 A - 7 72 BRCA BR-MEX-116 MID1 SNP Missense 23 10443132 G A 38 42 BRCA BR-MEX-116 DCX SNP Silent 23 110574253 C T 24 53 BRCA BR-MEX-116 SEPT6 SNP Missense_Mutation 23 118786825 C A 30 94 BRCA BR-MEX-116 GPR119 SNP Missense_Mutation 23 129519337 C T 17 49 BRCA BR-MEX-116 ERAS SNP Missense_Mutation 23 48687682 G A 36 68 BRCA BR-MEX-116 HUWE1 SNP Silent 23 53602615 A T 2 47 BRCA BR-MEX-116 LOC100129550 SNP Synonymous 3 122605699 C T 30 47 BRCA BR-MEX-116 NPHP3 SNP Missense_Mutation 3 132440905 C T 31 77 BRCA BR-MEX-116 XPC SNP Synonymous 3 14201313 G A 41 50 BRCA BR-MEX-116 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA BR-MEX-116 KBTBD5 SNP Silent 3 42727290 G A 38 59 BRCA BR-MEX-116 ZNF589 SNP Missense_Mutation 3 48309945 G A 37 42 BRCA BR-MEX-116 HEMK1 SNP Missense_Mutation 3 50614573 G A 39 75 BRCA BR-MEX-116 ITIH4 SNP Missense 3 52858317 C T 29 66 BRCA BR-MEX-116 ITIH4 SNP Synonymous 3 52858321 G A 45 56 BRCA BR-MEX-116 CACNA2D3 SNP Missense 3 55018683 G A 45 84 BRCA BR-MEX-116 LMOD3 SNP Missense_Mutation 3 69168818 C T 18 57 BRCA BR-MEX-116 CBR4 SNP Missense 4 169928890 T A 53 64 BRCA BR-MEX-116 WWC2 SNP Missense_Mutation 4 184182526 G A 45 88 BRCA BR-MEX-116 DSPP SNP Missense 4 88534319 G T 33 36 BRCA BR-MEX-116 DSPP SNP Synonymous 4 88537198 C T 17 42 BRCA BR-MEX-116 DSPP DEL In_frame_Del 4 88537205 GACAGCAGT - 37 56 BRCA BR-MEX-116 PCDHB13 SNP Missense 5 140593969 G A 41 93 BRCA BR-MEX-116 PCDHGA1 SNP Missense_Mutation 5 140712404 G A 38 66 BRCA BR-MEX-116 PCDH12 SNP Missense_Mutation 5 141336266 C T 30 79 BRCA BR-MEX-116 FAM105A DEL Frame_Shift_Del 5 14610388 GAGAACGA - 37 91 BRCA BR-MEX-116 NDST1 SNP Missense 5 149918829 A G 8 93 BRCA BR-MEX-116 PLEKHG4B SNP Missense_Mutation 5 163461 G A 37 54 BRCA BR-MEX-116 GNB2L1 SNP Synonymous 5 180670768 G A 45 55 BRCA BR-MEX-116 MAST4 SNP Missense 5 66460214 C T 32 52 BRCA BR-MEX-116 ERAP2 SNP Missense_Mutation 5 96215835 C T 25 69 BRCA BR-MEX-116 REV3L SNP Silent 6 111699001 G A 36 52 BRCA BR-MEX-116 ULBP2 SNP Missense 6 150266511 C T 27 45 BRCA BR-MEX-116 ZBTB2 SNP Silent 6 151687535 C T 21 73 BRCA BR-MEX-116 SYNE1 SNP Missense_Mutation 6 152765694 T C 52 58 BRCA BR-MEX-116 ARID1B SNP Missense_Mutation 6 157150428 C T 32 96 BRCA BR-MEX-116 TDRD6 INS Frame_Shift_Ins 6 46656460 - G 27 66 BRCA BR-MEX-116 DST SNP Silent 6 56505097 G A 45 53 BRCA BR-MEX-116 MDN1 SNP Missense_Mutation 6 90403808 G A 33 55 BRCA BR-MEX-116 PCOLCE SNP Missense_Mutation 7 100201780 G A 45 76 BRCA BR-MEX-116 BRAF SNP Missense_Mutation 7 140476724 G T 46 100 BRCA BR-MEX-116 KEL SNP Missense_Mutation 7 142649615 A T 7 72 BRCA BR-MEX-116 SEPT14 SNP Missense_Mutation 7 55910726 G A 33 89 BRCA BR-MEX-116 POR SNP Missense 7 75611613 G A 39 74 BRCA BR-MEX-116 PHTF2 SNP Silent 7 77583145 C A 29 56 BRCA BR-MEX-116 HEPACAM2 SNP Silent 7 92855730 G A 37 59 BRCA BR-MEX-116 DYNC1I1 SNP Missense_Mutation 7 95726860 C G 17 65 BRCA BR-MEX-116 EXT1 SNP Missense_Mutation 8 118834803 G A 40 84 BRCA BR-MEX-116 DEPDC6 SNP Silent 8 120886110 C T 25 74 BRCA BR-MEX-116 KIAA0196 SNP Missense_Mutation 8 126044607 C T 18 59 BRCA BR-MEX-116 XPO7 SNP Silent 8 21842262 C T 31 40 BRCA BR-MEX-116 FAM160B2 SNP Silent 8 21959793 C T 23 47 BRCA BR-MEX-116 GPR124 SNP Silent 8 37698865 C T 23 21 BRCA BR-MEX-116 DECR1 SNP Splice_site 8 91063906 T A 58 67 BRCA BR-MEX-116 MSRA SNP Silent 8 9912059 C T 30 49 BRCA BR-MEX-116 PPP2R4 SNP Splice_Site 9 131885418 G A 44 98 BRCA BR-MEX-116 LOC442421 SNP Missense 9 66499795 G A 38 76 BRCA BR-MEX-116 PTPRD SNP Missense_Mutation 9 8500913 C T 29 67 BRCA BR-MEX-120 SCAMP3 SNP Splice_site 1 155228618 C G 17 67 BRCA BR-MEX-120 MNDA SNP Missense_Mutation 1 158815411 C G 25 51 BRCA BR-MEX-120 FAM5C SNP Missense_Mutation 1 190067657 G A 38 57 BRCA BR-MEX-120 GPR3 SNP Missense_Mutation 1 27721146 A G 14 93 BRCA BR-MEX-120 ENKUR SNP Missense_Mutation 10 25273681 T C 49 86 BRCA BR-MEX-120 SLC22A10 SNP Missense_Mutation 11 63078493 A G 3 52 BRCA BR-MEX-120 GALNT4 SNP Missense_Mutation 12 89917566 G C 35 99 BRCA BR-MEX-120 PDXDC1 SNP Missense_Mutation 16 15100361 A G 4 66 BRCA BR-MEX-120 VWA3A SNP Silent 16 22163937 A G 3 51 BRCA BR-MEX-120 RFWD3 SNP Missense_Mutation 16 74662409 C A 26 87 BRCA BR-MEX-120 WBP2 SNP Missense_Mutation 17 73845714 A C 12 89 BRCA BR-MEX-120 RNF213 SNP Silent 17 78320994 T G 62 48 BRCA BR-MEX-120 SLC9A2 SNP Silent 2 103318895 C A 29 48 BRCA BR-MEX-120 PRPF40A SNP Missense_Mutation 2 153551108 G C 35 80 BRCA BR-MEX-120 SP100 SNP Missense_Mutation 2 231371027 A G 3 33 BRCA BR-MEX-120 SOX18 SNP Missense_Mutation 20 62679671 G A 39 53 BRCA BR-MEX-120 HAO1 SNP Splice_site 20 7864309 C T 18 62 BRCA BR-MEX-120 PAK7 SNP Missense_Mutation 20 9525092 G A 39 100 BRCA BR-MEX-120 CLDN14 SNP Missense_Mutation 21 37833678 G A 38 62 BRCA BR-MEX-120 C21orf57 SNP Missense_Mutation 21 47707000 A G 4 66 BRCA BR-MEX-120 GPRASP2 SNP Missense_Mutation 23 101971391 G A 41 69 BRCA BR-MEX-120 KALRN SNP Missense_Mutation 3 124356077 G A 39 72 BRCA BR-MEX-120 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA BR-MEX-120 MFI2 SNP Missense_Mutation 3 196735828 C T 31 49 BRCA BR-MEX-120 SUMF1 SNP Missense_Mutation 3 4403907 C T 23 96 BRCA BR-MEX-120 SEC24A SNP Missense_Mutation 5 134059332 C A 18 81 BRCA BR-MEX-120 GEMIN5 SNP Missense_Mutation 5 154304074 C A 30 97 BRCA BR-MEX-120 MLLT4 SNP Nonsense_Mutation 6 168315343 C T 29 100 BRCA BR-MEX-120 COL11A2 SNP Silent 6 33152009 G A 40 60 BRCA BR-MEX-120 TECPR1 SNP Silent 7 97870488 G A 39 28 BRCA BR-MEX-120 MYOM2 SNP Silent 8 2048706 G T 40 17 BRCA BR-MEX-120 TEX15 SNP Missense_Mutation 8 30705987 G T 48 54 BRCA BR-MEX-120 XKR5 SNP Silent 8 6690412 G A 39 33 BRCA BR-MEX-120 C9orf171 SNP Missense_Mutation 9 135447856 C T 27 77 BRCA BR-MEX-121 C1orf9 SNP Nonsense_Mutation 1 172558915 C T 25 82 BRCA BR-MEX-121 NPHS2 SNP Missense_Mutation 1 179526298 G C 33 74 BRCA BR-MEX-121 PRDM16 SNP Missense_Mutation 1 3342257 G A 39 95 BRCA BR-MEX-121 MACF1 SNP Silent 1 39757668 A G 15 52 BRCA BR-MEX-121 CNOT1 SNP Silent 16 58587707 T C 52 55 BRCA BR-MEX-121 ZNF652 SNP Silent 17 47376162 G A 41 60 BRCA BR-MEX-121 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA BR-MEX-121 TRANK1 SNP Silent 3 36873457 C T 29 52 BRCA BR-MEX-121 TTC21A SNP Missense_Mutation 3 39177900 A T 2 49 BRCA BR-MEX-121 HIST1H2BD SNP Silent 6 26158619 C T 31 64 BRCA BR-MEX-121 CYP7A1 SNP Silent 8 59409618 A C 14 48 BRCA BR-MEX-121 RECK SNP Silent 9 36118828 G C 39 33 BRCA BR-MEX-122 COL11A1 SNP Silent 1 103461563 C T 23 50 BRCA BR-MEX-122 RHOC SNP Silent 1 113245682 G A 33 60 BRCA BR-MEX-122 ASPM SNP Silent 1 197057419 C T 21 53 BRCA BR-MEX-122 TIE1 SNP Splice_Site 1 43786939 G C 34 92 BRCA BR-MEX-122 PCDH15 SNP Missense_Mutation 10 55587186 G A 38 60 BRCA BR-MEX-122 MMP1 SNP Missense_Mutation 11 102662185 C T 23 72 BRCA BR-MEX-122 KCNC1 SNP Missense_Mutation 11 17793249 C T 30 98 BRCA BR-MEX-122 OR5T2 SNP Missense_Mutation 11 55999760 G T 47 57 BRCA BR-MEX-122 GANAB SNP Missense_Mutation 11 62397147 T A 58 74 BRCA BR-MEX-122 OR10A6 SNP Nonsense_Mutation 11 7949333 G A 38 45 BRCA BR-MEX-122 ST5 SNP Missense_Mutation 11 8752389 C T 19 52 BRCA BR-MEX-122 CCDC38 SNP Missense_Mutation 12 96292382 C T 31 68 BRCA BR-MEX-122 ST8SIA2 SNP Silent 15 93007600 C T 27 38 BRCA BR-MEX-122 BRD7 SNP Missense_Mutation 16 50357574 G A 39 72 BRCA BR-MEX-122 CPNE7 SNP Missense_Mutation 16 89650124 T C 59 85 BRCA BR-MEX-122 SLC43A2 SNP Missense_Mutation 17 1494599 C T 19 52 BRCA BR-MEX-122 ACACA SNP Missense_Mutation 17 35608980 C T 32 98 BRCA BR-MEX-122 CDK12 SNP Silent 17 37619032 C T 26 64 BRCA BR-MEX-122 NFIC SNP Silent 19 3381737 C T 24 70 BRCA BR-MEX-122 MSL3 SNP Missense_Mutation 23 11783885 C A 26 53 BRCA BR-MEX-122 FMR1 SNP Missense_Mutation 23 147011702 G A 39 95 BRCA BR-MEX-122 SRPK3 SNP Missense_Mutation 23 153048261 G C 34 57 BRCA BR-MEX-122 G6PD SNP Nonsense_Mutation 23 153760443 C A 29 75 BRCA BR-MEX-122 COL6A6 SNP Silent 3 130290233 A G 3 62 BRCA BR-MEX-122 GLRA3 SNP Silent 4 175598343 G T 35 52 BRCA BR-MEX-122 UGT2B15 SNP Missense_Mutation 4 69520830 G T 43 82 BRCA BR-MEX-122 KIAA1244 SNP Nonsense_Mutation 6 138559748 C T 19 72 BRCA BR-MEX-122 DHX16 SNP Missense_Mutation 6 30624280 T C 51 86 BRCA BR-MEX-122 RIMS1 DNP Missense_Mutation 6 72970423 GC AA 46 62 BRCA BR-MEX-122 RELN SNP Missense_Mutation 7 103270613 C T 19 100 BRCA BR-MEX-122 NRF1 SNP Missense_Mutation 7 129330250 G C 40 99 BRCA BR-MEX-122 TRIM4 SNP Missense_Mutation 7 99489935 G A 37 49 BRCA BR-MEX-122 KIF13B SNP Missense_Mutation 8 28974424 G A 40 81 BRCA BR-MEX-122 GPR124 SNP Missense_Mutation 8 37686816 G A 37 69 BRCA BR-MEX-122 ADAMTS13 SNP Silent 9 136323123 C T 29 65 BRCA BR-MEX-122 FANCC SNP Splice_Site 9 97887367 C T 18 80 BRCA BR-MEX-122 PTCH1 SNP Silent 9 98241360 G A 40 52 BRCA BR-MEX-123 FCRL6 SNP Silent 1 159785391 G A 45 52 BRCA BR-MEX-123 VSIG8 SNP Missense_Mutation 1 159826421 C G 22 75 BRCA BR-MEX-123 PRRX1 SNP Missense_Mutation 1 170688968 C T 27 49 BRCA BR-MEX-123 CSF3R SNP Missense 1 36941238 G A 43 58 BRCA BR-MEX-123 ATE1 SNP Missense_Mutation 10 123670541 C T 24 83 BRCA BR-MEX-123 APOA5 SNP Missense_Mutation 11 116661185 G A 38 55 BRCA BR-MEX-123 ZFP91 SNP Missense_Mutation 11 58384245 C G 32 59 BRCA BR-MEX-123 ZFP91 SNP Silent 11 58384747 C T 32 75 BRCA BR-MEX-123 ZP1 SNP Missense_Mutation 11 60637364 G A 33 54 BRCA BR-MEX-123 CD6 SNP Silent 11 60777195 G A 39 50 BRCA BR-MEX-123 AP2A2 SNP Missense_Mutation 11 994157 C T 19 76 BRCA BR-MEX-123 RASAL1 SNP Missense_Mutation 12 113553455 C G 29 94 BRCA BR-MEX-123 HELB SNP Missense_Mutation 12 66725351 G T 45 51 BRCA BR-MEX-123 ZFC3H1 SNP Missense_Mutation 12 72023392 G A 45 95 BRCA BR-MEX-123 DCN SNP Silent 12 91552260 A T 13 62 BRCA BR-MEX-123 OR4K2 SNP Missense_Mutation 14 20345189 A G 8 55 BRCA BR-MEX-123 FOXA1 SNP Silent 14 38060723 C T 24 73 BRCA BR-MEX-123 IFI27L1 SNP Splice_Site 14 94568322 G A 44 83 BRCA BR-MEX-123 ITPKA SNP Missense_Mutation 15 41794669 G A 45 57 BRCA BR-MEX-123 MYH11 SNP Splice_site 16 15841905 G A 40 73 BRCA BR-MEX-123 CES8 SNP Splice_site 16 67022605 C A 18 50 BRCA BR-MEX-123 PCGF2 SNP Missense_Mutation 17 36891775 C T 31 76 BRCA BR-MEX-123 PCGF2 SNP Missense 17 36895025 C T 31 61 BRCA BR-MEX-123 PCGF2 SNP Missense 17 36895049 C T 29 69 BRCA BR-MEX-123 TMEM100 SNP Missense_Mutation 17 53798052 G T 46 52 BRCA BR-MEX-123 TP53 DEL Frame_Shift_Del 17 7579463 G - 35 54 BRCA BR-MEX-123 SLC1A6 SNP Silent 19 15072948 G A 40 50 BRCA BR-MEX-123 C19orf35 DEL Frame_Shift_Del 19 2275732 C - 26 51 BRCA BR-MEX-123 DMKN SNP Missense_Mutation 19 36002411 T C 55 43 BRCA BR-MEX-123 MYT1L SNP Silent 2 1926908 G T 37 50 BRCA BR-MEX-123 COL6A3 SNP Silent 2 238285731 G A 40 44 BRCA BR-MEX-123 TMEM111 SNP Missense_Mutation 3 10011417 T G 64 88 BRCA BR-MEX-123 C3orf37 SNP Missense_Mutation 3 129007734 G A 38 91 BRCA BR-MEX-123 MUC4 SNP Missense 3 195506023 G A 40 53 BRCA BR-MEX-123 TRIM61 SNP Missense_Mutation 4 165891141 G A 40 54 BRCA BR-MEX-123 PDLIM5 SNP Nonsense_Mutation 4 95575768 C T 31 71 BRCA BR-MEX-123 NMUR2 SNP Missense_Mutation 5 151772005 C T 27 45 BRCA BR-MEX-123 BTNL8 SNP Silent 5 180335815 G A 39 33 BRCA BR-MEX-123 RXFP3 SNP Silent 5 33937016 G A 39 13 BRCA BR-MEX-123 FOXF2 SNP Missense_Mutation 6 1390807 C G 23 71 BRCA BR-MEX-123 DLL1 SNP Silent 6 170597400 G A 37 46 BRCA BR-MEX-123 NCR3 SNP Missense_Mutation 6 31557655 C T 19 50 BRCA BR-MEX-123 DOCK4 SNP Missense_Mutation 7 111368418 G A 38 60 BRCA BR-MEX-123 WDR91 SNP Silent 7 134873197 G A 38 49 BRCA BR-MEX-123 XRCC2 SNP Silent 7 152346120 G A 42 58 BRCA BR-MEX-123 VSTM2A SNP Missense 7 54636856 C T 27 80 BRCA BR-MEX-123 CYTH3 SNP Missense_Mutation 7 6204955 C T 23 86 BRCA BR-MEX-123 TEX15 SNP Silent 8 30701749 C T 19 40 BRCA BR-MEX-123 STMN2 SNP Silent 8 80549089 C T 28 68 BRCA BR-MEX-123 S1PR3 SNP Missense_Mutation 9 91617031 C T 27 63 BRCA BR-MEX-126 DYRK3 SNP Missense_Mutation 1 206821706 C A 17 66 BRCA BR-MEX-126 C1orf57 SNP Missense_Mutation 1 233113957 G A 40 57 BRCA BR-MEX-126 RGS7 SNP Splice_Site 1 240975345 T C 53 91 BRCA BR-MEX-126 KIAA1522 SNP Missense_Mutation 1 33235304 C T 22 81 BRCA BR-MEX-126 ZNF25 SNP Missense_Mutation 10 38241387 A C 8 73 BRCA BR-MEX-126 PDE6C SNP Missense_Mutation 10 95381783 A G 2 76 BRCA BR-MEX-126 MLL SNP Nonsense_Mutation 11 118350902 C T 29 98 BRCA BR-MEX-126 EHBP1L1 SNP Missense_Mutation 11 65357436 C A 22 52 BRCA BR-MEX-126 ADPRHL1 SNP Missense_Mutation 13 114088161 G T 44 93 BRCA BR-MEX-126 MYCBP2 SNP Missense_Mutation 13 77748602 C T 27 100 BRCA BR-MEX-126 UBE3A SNP Missense_Mutation 15 25616242 T A 52 93 BRCA BR-MEX-126 CDH1 SNP Nonsense_Mutation 16 68863602 G T 45 98 BRCA BR-MEX-126 HELZ SNP Missense_Mutation 17 65147277 G C 33 58 BRCA BR-MEX-126 ZNF461 SNP Missense_Mutation 19 37129568 C T 20 51 BRCA BR-MEX-126 FAM123C SNP Silent 2 131521625 A T 7 40 BRCA BR-MEX-126 GDF7 SNP Missense_Mutation 2 20870236 C G 26 68 BRCA BR-MEX-126 AFTPH SNP Missense_Mutation 2 64778806 G A 46 64 BRCA BR-MEX-126 ALMS1 SNP Silent 2 73680944 T C 57 53 BRCA BR-MEX-126 NPHP3 SNP Missense_Mutation 3 132440868 G T 41 77 BRCA BR-MEX-126 RTP1 SNP Missense_Mutation 3 186917354 G C 44 66 BRCA BR-MEX-126 APC SNP Silent 5 112174945 G A 40 45 BRCA BR-MEX-126 PCDHB4 SNP Missense_Mutation 5 140502019 C A 26 61 BRCA BR-MEX-126 COL14A1 SNP Missense_Mutation 8 121344387 C T 23 78 BRCA BR-MEX-129 C11orf63 SNP Splice_site 11 122828072 C T 19 49 BRCA BR-MEX-129 PLA2G16 SNP Silent 11 63357707 G A 36 61 BRCA BR-MEX-129 CD163L1 SNP Missense_Mutation 12 7527949 C T 30 51 BRCA BR-MEX-129 KIAA1409 SNP Missense_Mutation 14 94079386 G A 38 97 BRCA BR-MEX-129 AKAP13 SNP Missense_Mutation 15 86278346 G T 41 97 BRCA BR-MEX-129 LAMA3 SNP Missense_Mutation 18 21437843 G A 37 50 BRCA BR-MEX-129 WIZ SNP Missense_Mutation 19 15538064 G C 42 50 BRCA BR-MEX-129 RBM10 SNP Missense_Mutation 23 47030503 C T 23 70 BRCA BR-MEX-129 MRPL3 SNP Missense_Mutation 3 131181654 A C 9 53 BRCA BR-MEX-129 SI SNP Nonsense_Mutation 3 164700122 C T 21 62 BRCA BR-MEX-129 CANX SNP Silent 5 179147471 T C 55 52 BRCA BR-MEX-129 KCND2 SNP Silent 7 120385851 C T 19 72 BRCA BR-MEX-129 HERPUD2 SNP Missense_Mutation 7 35674848 T G 50 49 BRCA BR-MEX-138 ASPM SNP Missense_Mutation 1 197073502 C T 28 56 BRCA BR-MEX-138 TECTB SNP Missense_Mutation 10 114057879 G A 42 78 BRCA BR-MEX-138 HS6ST3 SNP Missense_Mutation 13 97485053 G T 33 66 BRCA BR-MEX-138 SERPINA1 SNP Silent 14 94848993 C A 21 55 BRCA BR-MEX-138 SHC4 SNP Missense_Mutation 15 49118284 G T 35 83 BRCA BR-MEX-138 BCMO1 SNP Silent 16 81324008 C A 29 43 BRCA BR-MEX-138 BAZ2B SNP Missense_Mutation 2 160241775 G T 34 71 BRCA BR-MEX-138 ZFP37 SNP Silent 9 115805266 C T 19 48 BRCA BR-MEX-138 OR1N1 SNP Missense_Mutation 9 125288846 G A 35 79 BRCA BR-MEX-150 RYR2 SNP Missense_Mutation 1 237813297 A G 8 80 BRCA BR-MEX-150 GRK5 SNP Silent 10 121189890 A G 2 63 BRCA BR-MEX-150 ADAMTS14 SNP Silent 10 72434631 G T 47 52 BRCA BR-MEX-150 RCOR2 SNP Missense_Mutation 11 63681922 C T 23 95 BRCA BR-MEX-150 FGF4 SNP Silent 11 69588116 C T 27 24 BRCA BR-MEX-150 OASL SNP Missense_Mutation 12 121458471 C T 24 63 BRCA BR-MEX-150 ADAM21 SNP Missense_Mutation 14 70924913 G C 33 62 BRCA BR-MEX-150 VAC14 SNP Silent 16 70732609 G C 45 56 BRCA BR-MEX-150 DNAH2 SNP Missense_Mutation 17 7701562 G A 38 68 BRCA BR-MEX-150 EPS15L1 SNP Silent 19 16514640 C T 24 56 BRCA BR-MEX-150 ZNF257 SNP Silent 19 22271803 C A 22 52 BRCA BR-MEX-150 LMNB2 SNP Silent 19 2434313 G C 41 42 BRCA BR-MEX-150 PTPRH SNP Missense_Mutation 19 55715261 C T 32 47 BRCA BR-MEX-150 SDC1 SNP Missense_Mutation 2 20402926 G A 39 52 BRCA BR-MEX-150 BRD1 SNP Silent 22 50217612 C T 23 7 BRCA BR-MEX-150 PIK3CA SNP Missense_Mutation 3 178936092 A G 11 90 BRCA BR-MEX-150 KIAA0947 SNP Missense_Mutation 5 5464545 C T 30 71 BRCA BR-MEX-150 SLC17A5 SNP Missense_Mutation 6 74331559 T A 49 89 BRCA BR-MEX-150 RFC2 SNP Missense_Mutation 7 73668640 C T 28 63 BRCA BR-MEX-150 OR13C3 SNP Missense_Mutation 9 107299058 C T 26 50 BRCA BR-MEX-150 GNE SNP Missense_Mutation 9 36219948 C T 26 94 BRCA BR-MEX-154 SMG5 SNP Missense_Mutation 1 156231141 C T 18 61 BRCA BR-MEX-154 CACNA1S SNP Synonymous 1 201009810 C A 29 51 BRCA BR-MEX-154 TFAP2E SNP Missense_Mutation 1 36040559 G A 37 92 BRCA BR-MEX-154 TMEM59 SNP Missense_Mutation 1 54512992 C A 20 70 BRCA BR-MEX-154 TAS1R1 SNP Missense_Mutation 1 6635387 G A 47 82 BRCA BR-MEX-154 CLSTN1 SNP Missense_Mutation 1 9796019 T A 56 79 BRCA BR-MEX-154 DDX21 SNP Missense_Mutation 10 70731692 A G 4 62 BRCA BR-MEX-154 IFIT2 SNP Nonsense_Mutation 10 91066145 G A 41 73 BRCA BR-MEX-154 KCNJ5 SNP Silent 11 128781960 C T 27 48 BRCA BR-MEX-154 KCNA4 SNP Silent 11 30033107 G A 37 47 BRCA BR-MEX-154 TMTC2 SNP Silent 12 83290112 G T 39 0 BRCA BR-MEX-154 DDX12 INS Frame_Shift_Ins 12 9571496 - A 25 63 BRCA BR-MEX-154 THSD1 SNP Missense_Mutation 13 52952500 C A 28 72 BRCA BR-MEX-154 NID2 SNP Missense_Mutation 14 52496390 G A 39 55 BRCA BR-MEX-154 AK7 SNP Missense_Mutation 14 96875258 C T 27 60 BRCA BR-MEX-154 CWC25 SNP Missense 17 36977308 G T 46 97 BRCA BR-MEX-154 HDAC5 SNP Missense 17 42156519 C A 20 98 BRCA BR-MEX-154 SFRS1 SNP Missense_Mutation 17 56083775 C A 30 99 BRCA BR-MEX-154 AZI1 SNP Silent 17 79180632 G T 39 58 BRCA BR-MEX-154 ZNF397 SNP Missense_Mutation 18 32822612 G A 41 77 BRCA BR-MEX-154 POLR2E SNP Missense_Mutation 19 1093969 T C 59 81 BRCA BR-MEX-154 LILRB5 SNP Missense 19 54754932 C T 22 44 BRCA BR-MEX-154 NPAS2 SNP Silent 2 101591345 G A 38 30 BRCA BR-MEX-154 GREB1 DEL Frame_Shift_Del 2 11735439 GT - 36 80 BRCA BR-MEX-154 GTF3C2 SNP Silent 2 27560170 T C 51 40 BRCA BR-MEX-154 POTED SNP Synonymous 21 15011839 T C 51 32 BRCA BR-MEX-154 RWDD2B SNP Missense_Mutation 21 30391555 C A 28 50 BRCA BR-MEX-154 C21orf121 SNP Synonymous 21 43442339 C T 19 47 BRCA BR-MEX-154 HSF2BP SNP Missense_Mutation 21 44949822 G A 35 89 BRCA BR-MEX-154 LAMP2 SNP Splice_Site_SNP 23 119581881 C G 32 86 BRCA BR-MEX-154 GABRE SNP Missense_Mutation 23 151129827 C T 29 66 BRCA BR-MEX-154 PJA1 SNP Missense_Mutation 23 68382265 T A 52 41 BRCA BR-MEX-154 NUP153 SNP Missense_Mutation 6 17629522 C T 31 82 BRCA BR-MEX-154 RAB11FIP1 SNP Silent 8 37730178 T C 56 54 BRCA BR-MEX-155 FDPS SNP Missense_Mutation 1 155279675 G C 39 53 BRCA BR-MEX-155 GREM2 SNP Silent 1 240656455 C T 27 46 BRCA BR-MEX-155 MFSD2A SNP Missense_Mutation 1 40432306 G A 48 69 BRCA BR-MEX-155 KIAA0913 SNP Missense_Mutation 10 75551134 G T 36 96 BRCA BR-MEX-155 IGF1 SNP Missense_Mutation 12 102874128 A G 13 75 BRCA BR-MEX-155 INF2 SNP Splice_site 14 105246551 C T 30 95 BRCA BR-MEX-155 CRTC3 SNP Missense_Mutation 15 91150692 T C 55 74 BRCA BR-MEX-155 C16orf89 SNP Silent 16 5115949 C T 24 45 BRCA BR-MEX-155 RLTPR SNP Splice_site 16 67685218 C T 27 43 BRCA BR-MEX-155 STAC2 SNP Missense_Mutation 17 37370529 G T 36 94 BRCA BR-MEX-155 SNED1 SNP Missense_Mutation 2 241973195 C G 30 97 BRCA BR-MEX-155 ALLC SNP Silent 2 3727463 C T 19 34 BRCA BR-MEX-155 CYTSA SNP Missense_Mutation 22 24718104 G A 39 98 BRCA BR-MEX-155 HTATSF1 SNP Silent 23 135581894 C T 21 49 BRCA BR-MEX-155 PLXNB1 SNP Missense_Mutation 3 48457519 G C 33 66 BRCA BR-MEX-155 NPFFR2 SNP Missense_Mutation 4 72897710 G A 38 49 BRCA BR-MEX-155 FSTL4 SNP Missense_Mutation 5 132648430 C A 21 69 BRCA BR-MEX-155 NKX2-5 SNP Silent 5 172659764 G C 38 58 BRCA BR-MEX-155 DST SNP Missense_Mutation 6 56490021 A C 4 50 BRCA BR-MEX-155 WNT2 SNP Nonsense_Mutation 7 116960638 C T 26 75 BRCA BR-MEX-155 SEPT7 SNP Silent 7 35942763 C T 31 59 BRCA BR-MEX-155 NPC1L1 SNP Missense_Mutation 7 44579613 G A 40 66 BRCA BR-MEX-155 C8orf46 SNP Silent 8 67425831 G A 37 26 BRCA BR-MEX-158 VPS13D SNP Silent 1 12463981 C A 29 78 BRCA BR-MEX-158 GORAB SNP Silent 1 170508613 G A 35 49 BRCA BR-MEX-158 ASTN1 SNP Missense_Mutation 1 177001910 G A 40 85 BRCA BR-MEX-158 NLRP3 SNP Missense_Mutation 1 247599327 A G 11 55 BRCA BR-MEX-158 PARG SNP Splice_site 10 51589224 G A 33 78 BRCA BR-MEX-158 PPFIA2 SNP Missense_Mutation 12 81688712 T C 52 92 BRCA BR-MEX-158 GAS6 SNP Missense_Mutation 13 114525060 C T 29 58 BRCA BR-MEX-158 FANCI SNP Missense_Mutation 15 89811698 T A 52 76 BRCA BR-MEX-158 PALB2 SNP Silent 16 23646201 A G 4 52 BRCA BR-MEX-158 SPNS1 SNP Nonsense_Mutation 16 28995566 G A 47 70 BRCA BR-MEX-158 ABCC12 SNP Missense_Mutation 16 48162405 A T 12 46 BRCA BR-MEX-158 NARFL SNP Splice_site 16 780845 G A 45 80 BRCA BR-MEX-158 SLC39A6 SNP Silent 18 33706965 C T 31 43 BRCA BR-MEX-158 INSR SNP Silent 19 7152895 A G 7 29 BRCA BR-MEX-158 CCDC141 SNP Missense_Mutation 2 179732821 G A 39 80 BRCA BR-MEX-158 C2orf57 SNP Missense_Mutation 2 232458690 C T 30 54 BRCA BR-MEX-158 C21orf29 SNP Missense_Mutation 21 45941869 G A 37 77 BRCA BR-MEX-158 GPR112 SNP Missense_Mutation 23 135432400 C A 32 54 BRCA BR-MEX-158 HLTF SNP Missense_Mutation 3 148791073 C T 30 58 BRCA BR-MEX-158 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA BR-MEX-158 NICN1 SNP Silent 3 49462445 C T 32 77 BRCA BR-MEX-158 BMPER SNP Silent 7 34118638 G A 40 46 BRCA BR-MEX-158 ZNF713 SNP Missense_Mutation 7 56007305 C T 24 88 BRCA BR-MEX-158 SLC27A4 SNP Silent 9 131107452 G A 45 59 BRCA BR-MEX-165 FAM132A SNP Missense_Mutation 1 1179371 T G 58 76 BRCA BR-MEX-165 C1orf56 SNP Missense_Mutation 1 151020381 G C 42 75 BRCA BR-MEX-165 OLFML2B SNP Missense_Mutation 1 161953757 G A 38 49 BRCA BR-MEX-165 DDR2 SNP Missense_Mutation 1 162748500 T C 62 90 BRCA BR-MEX-165 DTL SNP Missense_Mutation 1 212220690 G C 45 94 BRCA BR-MEX-165 GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA BR-MEX-165 FAM22A DEL In_frame_Del 10 88994266 CTC - 32 49 BRCA BR-MEX-165 KRT74 SNP Silent 12 52960783 G T 47 62 BRCA BR-MEX-165 DGKA SNP Missense_Mutation 12 56333277 A C 3 57 BRCA BR-MEX-165 AP1G2 SNP Missense_Mutation 14 24033791 G A 39 57 BRCA BR-MEX-165 AP2B1 SNP Missense_Mutation 17 33977780 C T 31 74 BRCA BR-MEX-165 DNAI2 SNP Missense_Mutation 17 72285813 C A 30 72 BRCA BR-MEX-165 POTEC SNP Missense 18 14537868 G A 47 49 BRCA BR-MEX-165 POTEC SNP Missense 18 14537871 C T 17 51 BRCA BR-MEX-165 ZNF536 SNP Silent 19 31039601 G T 47 51 BRCA BR-MEX-165 ZNF527 SNP Missense_Mutation 19 37879697 A T 8 53 BRCA BR-MEX-165 RGPD5 SNP Missense 2 113147370 G A 48 84 BRCA BR-MEX-165 ZC3H15 DNP Missense_Mutation 2 187371446 GA TT 45 72 BRCA BR-MEX-165 PTPRT SNP Silent 20 40944528 G A 37 22 BRCA BR-MEX-165 IQSEC2 SNP Missense_Mutation 23 53279696 C T 24 65 BRCA BR-MEX-165 MED12 SNP Missense_Mutation 23 70349258 C T 32 81 BRCA BR-MEX-165 PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA BR-MEX-165 FOXP1 SNP Nonsense_Mutation 3 71102834 G A 46 100 BRCA BR-MEX-165 MFAP3L SNP Silent 4 170912847 G A 40 44 BRCA BR-MEX-165 GABRB1 SNP Silent 4 47405408 C T 31 47 BRCA BR-MEX-165 DST SNP Missense 6 56328712 T C 49 50 BRCA BR-MEX-165 USP17L2 SNP Missense 8 11996203 A G 9 46 BRCA BR-MEX-166 RABGAP1L SNP Missense_Mutation 1 174652711 C T 32 79 BRCA BR-MEX-166 OBSCN SNP Splice_site 1 228520902 G T 39 81 BRCA BR-MEX-166 SSX2IP SNP Missense_Mutation 1 85136465 G A 48 50 BRCA BR-MEX-166 CLCA4 SNP Missense_Mutation 1 87036823 G A 41 77 BRCA BR-MEX-166 CLCA4 SNP Silent 1 87041239 G A 33 25 BRCA BR-MEX-166 WDR37 SNP Missense_Mutation 10 1151123 C G 18 100 BRCA BR-MEX-166 MKX SNP Silent 10 28023503 G C 47 50 BRCA BR-MEX-166 ATM SNP Splice_site 11 108151895 G A 35 97 BRCA BR-MEX-166 ACAD8 SNP Missense_Mutation 11 134128925 C A 32 76 BRCA BR-MEX-166 SPTY2D1 SNP Missense_Mutation 11 18637111 C A 20 58 BRCA BR-MEX-166 LGR4 SNP Missense_Mutation 11 27389656 A T 8 91 BRCA BR-MEX-166 SSRP1 SNP Missense_Mutation 11 57095220 T C 54 89 BRCA BR-MEX-166 BATF2 SNP De_novo_Start_OutOfFrame 11 64757213 C T 19 29 BRCA BR-MEX-166 CUX2 SNP Missense_Mutation 12 111758433 C T 27 66 BRCA BR-MEX-166 CCDC62 SNP Missense_Mutation 12 123286248 A G 11 62 BRCA BR-MEX-166 BCL11B SNP Silent 14 99640782 C T 19 55 BRCA BR-MEX-166 CDH1 SNP Silent 16 68857327 A G 5 54 BRCA BR-MEX-166 KLHL36 SNP Missense_Mutation 16 84691115 C G 17 85 BRCA BR-MEX-166 ZNRF4 SNP Missense_Mutation 19 5456262 G A 40 35 BRCA BR-MEX-166 GP6 SNP Silent 19 55526364 G T 41 51 BRCA BR-MEX-166 TTN SNP Missense_Mutation 2 179483526 G T 35 85 BRCA BR-MEX-166 KRTCAP3 SNP Missense_Mutation 2 27666852 A C 13 67 BRCA BR-MEX-166 C2orf71 SNP Missense_Mutation 2 29293976 G A 39 55 BRCA BR-MEX-166 PNPLA3 SNP Missense_Mutation 22 44328788 G A 40 41 BRCA BR-MEX-166 TRIM42 SNP Missense_Mutation 3 140407294 C A 30 56 BRCA BR-MEX-166 PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA BR-MEX-166 NDST3 SNP Missense_Mutation 4 118975805 C A 30 60 BRCA BR-MEX-166 HAND1 SNP Silent 5 153857224 C T 23 21 BRCA BR-MEX-166 SLU7 SNP Missense_Mutation 5 159834993 C A 30 100 BRCA BR-MEX-166 NSD1 SNP Missense_Mutation 5 176675204 C T 19 56 BRCA BR-MEX-166 MAK SNP Missense_Mutation 6 10791983 T C 50 68 BRCA BR-MEX-166 TAAR6 SNP Missense_Mutation 6 132891552 C T 30 55 BRCA BR-MEX-166 TAAR1 SNP Silent 6 132966483 C T 24 48 BRCA BR-MEX-166 HIST1H2AC SNP Missense_Mutation 6 26124488 A G 5 92 BRCA BR-MEX-166 LTA SNP Missense_Mutation 6 31540751 G A 40 51 BRCA BR-MEX-166 ZNF498 SNP Missense_Mutation 7 99227620 C A 23 61 BRCA BR-MEX-166 TMEM215 SNP Missense_Mutation 9 32784761 G T 41 81 BRCA BR-MEX-167 RXFP4 SNP Silent 1 155912127 G A 47 52 BRCA BR-MEX-167 FAM13C SNP Silent 10 61022287 C T 23 49 BRCA BR-MEX-167 CTTN SNP Silent 11 70275236 G A 39 39 BRCA BR-MEX-167 FAT3 SNP Missense_Mutation 11 92538372 G C 44 74 BRCA BR-MEX-167 SGCG SNP Silent 13 23894797 T C 58 47 BRCA BR-MEX-167 INF2 SNP Splice_site 14 105246551 C T 30 95 BRCA BR-MEX-167 CBFB SNP Nonsense_Mutation 16 67070623 C T 23 77 BRCA BR-MEX-167 GRIN2A SNP Missense_Mutation 16 9858017 G T 41 53 BRCA BR-MEX-167 WDR7 SNP Silent 18 54448796 G A 39 27 BRCA BR-MEX-167 MYO18B SNP Silent 22 26165341 C T 19 48 BRCA BR-MEX-167 FGD1 SNP Missense_Mutation 23 54472657 G A 40 64 BRCA BR-MEX-169 SPAG17 SNP Missense_Mutation 1 118506553 T C 60 60 BRCA BR-MEX-169 FLG2 SNP Missense_Mutation 1 152324505 G T 44 20 BRCA BR-MEX-169 UBR4 SNP Missense_Mutation 1 19490823 C A 26 83 BRCA BR-MEX-169 VPS33A SNP Missense_Mutation 12 122750886 G A 38 75 BRCA BR-MEX-169 PRSS22 SNP Missense_Mutation 16 2904005 T A 55 53 BRCA BR-MEX-169 ROGDI SNP Missense_Mutation 16 4849731 G A 39 72 BRCA BR-MEX-169 BPTF SNP Silent 17 65871042 T C 55 53 BRCA BR-MEX-169 GSK3B SNP Missense_Mutation 3 119631607 C T 23 97 BRCA BR-MEX-169 PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA BR-MEX-169 KDM1B SNP Missense_Mutation 6 18217974 A T 12 77 BRCA BR-MEX-169 LPAR1 SNP Missense_Mutation 9 113637943 G A 41 63 BRCA BR-MEX-172 ATAD3B SNP Missense_Mutation 1 1417638 G T 38 74 BRCA BR-MEX-172 CHUK SNP Nonsense_Mutation 10 101978536 C A 29 95 BRCA BR-MEX-172 TMEM132D SNP Missense_Mutation 12 130185156 G A 38 100 BRCA BR-MEX-172 PZP SNP Missense_Mutation 12 9345141 C T 21 32 BRCA BR-MEX-172 OR4N2 SNP Missense_Mutation 14 20296460 G C 48 53 BRCA BR-MEX-172 SERPINA12 SNP Missense_Mutation 14 94953738 C T 19 37 BRCA BR-MEX-172 ALDH1A3 SNP Silent 15 101427830 G A 38 17 BRCA BR-MEX-172 RYR3 SNP Silent 15 33941284 C T 19 44 BRCA BR-MEX-172 KIAA1024 SNP Missense_Mutation 15 79748598 C T 23 67 BRCA BR-MEX-172 MYL4 SNP Missense_Mutation 17 45286880 C T 24 80 BRCA BR-MEX-172 TCEB3B SNP Missense_Mutation 18 44560873 C T 23 18 BRCA BR-MEX-172 DCAF15 SNP Missense_Mutation 19 14070127 G C 42 56 BRCA BR-MEX-172 NLRP7 SNP Missense_Mutation 19 55451396 G A 38 58 BRCA BR-MEX-172 U2AF2 SNP Missense_Mutation 19 56170579 G T 39 68 BRCA BR-MEX-172 PAX3 SNP Missense_Mutation 2 223066731 G A 43 98 BRCA BR-MEX-172 KCNQ2 SNP Missense_Mutation 20 62038650 C T 31 99 BRCA BR-MEX-172 HUWE1 SNP Silent 23 53591676 A G 7 51 BRCA BR-MEX-172 ATRX SNP Missense_Mutation 23 76813029 G A 45 96 BRCA BR-MEX-172 SEPSECS SNP Silent 4 25127366 A C 7 55 BRCA BR-MEX-172 C5orf53 SNP Silent 5 139508211 A G 4 74 BRCA BR-MEX-172 RASGRF2 SNP Missense_Mutation 5 80419581 C A 24 97 BRCA BR-MEX-172 AEBP1 SNP Missense_Mutation 7 44150329 A G 12 69 BRCA BR-MEX-172 KCNB2 SNP Missense_Mutation 8 73848825 C A 24 100 BRCA BR-MEX-172 JAK2 SNP Splice_Site 9 5022214 G T 44 86 BRCA BR-MEX-174 COL11A1 SNP Splice_site 1 103474070 C T 22 41 BRCA BR-MEX-174 DHRS3 SNP Missense_Mutation 1 12639412 T C 52 90 BRCA BR-MEX-174 RHBG SNP Silent 1 156348060 C T 28 54 BRCA BR-MEX-174 TRIM67 SNP Nonsense_Mutation 1 231337131 C T 21 84 BRCA BR-MEX-174 PKD2L1 SNP Missense_Mutation 10 102055955 T A 58 91 BRCA BR-MEX-174 OR8B12 SNP Silent 11 124412786 A T 3 48 BRCA BR-MEX-174 OR9I1 SNP Silent 11 57886887 G A 39 40 BRCA BR-MEX-174 ITPR2 SNP Splice_Site 12 26553192 C G 28 68 BRCA BR-MEX-174 PLXNC1 SNP Missense_Mutation 12 94654563 G A 40 100 BRCA BR-MEX-174 SLAIN1 SNP Missense_Mutation 13 78337287 C A 29 78 BRCA BR-MEX-174 PYGL SNP Splice_site 14 51383450 C A 21 40 BRCA BR-MEX-174 SMG1 SNP Missense_Mutation 16 18887474 A C 4 78 BRCA BR-MEX-174 PRPF8 SNP Missense_Mutation 17 1577883 A T 3 79 BRCA BR-MEX-174 C19orf12 SNP Silent 19 30199288 C A 25 50 BRCA BR-MEX-174 RHPN2 SNP Silent 19 33481435 G A 36 53 BRCA BR-MEX-174 LILRB4 SNP Missense_Mutation 19 55175678 C T 32 45 BRCA BR-MEX-174 NLRP11 SNP Missense_Mutation 19 56319297 T C 58 52 BRCA BR-MEX-174 NPHP1 SNP Missense_Mutation 2 110907764 G A 41 86 BRCA BR-MEX-174 RIF1 SNP Missense_Mutation 2 152285410 T C 61 90 BRCA BR-MEX-174 RAPGEF4 SNP Missense_Mutation 2 173879313 G C 33 89 BRCA BR-MEX-174 TTN SNP Missense_Mutation 2 179539769 C T 29 63 BRCA BR-MEX-174 SLC5A6 SNP Nonsense_Mutation 2 27430240 G T 44 97 BRCA BR-MEX-174 LTBP1 SNP Missense_Mutation 2 33567992 A G 7 64 BRCA BR-MEX-174 EXOC6B SNP Missense_Mutation 2 72707787 C G 32 48 BRCA BR-MEX-174 CPNE1 SNP Missense_Mutation 20 34220769 G C 33 85 BRCA BR-MEX-174 SPO11 SNP Silent 20 55904950 G A 35 55 BRCA BR-MEX-174 TTC38 SNP Missense_Mutation 22 46669929 C A 25 62 BRCA BR-MEX-174 GPR101 SNP Silent 23 136112553 G C 37 72 BRCA BR-MEX-174 MAP7D2 SNP Missense_Mutation 23 20073864 C T 31 75 BRCA BR-MEX-174 FAM47B SNP Missense_Mutation 23 34962567 G C 36 46 BRCA BR-MEX-174 SMC1A SNP Silent 23 53423221 G A 34 80 BRCA BR-MEX-174 SMC4 SNP Missense_Mutation 3 160150243 G C 43 100 BRCA BR-MEX-174 YEATS2 SNP Splice_site 3 183471914 G C 41 63 BRCA BR-MEX-174 CACNA1D SNP Splice_site 3 53815693 T C 59 53 BRCA BR-MEX-174 WDR1 SNP Missense_Mutation 4 10099376 A C 4 88 BRCA BR-MEX-174 FBXW7 SNP Missense_Mutation 4 153268128 G A 33 99 BRCA BR-MEX-174 CCNG2 SNP Silent 4 78087008 T A 54 52 BRCA BR-MEX-174 ARHGAP24 SNP Silent 4 86491787 C T 28 61 BRCA BR-MEX-174 KIAA1949 SNP Missense_Mutation 6 30653297 G C 33 46 BRCA BR-MEX-174 ITPR3 SNP Missense_Mutation 6 33632962 G A 37 61 BRCA BR-MEX-174 LAMB4 SNP Silent 7 107748142 G T 43 51 BRCA BR-MEX-174 PCLO SNP Missense_Mutation 7 82544572 C T 21 100 BRCA BR-MEX-174 ZNF34 SNP Missense_Mutation 8 145999971 C G 20 58 BRCA BR-MEX-174 IKBKAP SNP Silent 9 111673441 G C 33 57 BRCA BR-MEX-174 LRRC8A SNP Missense_Mutation 9 131669963 T A 58 90 BRCA BR-MEX-184 CD5L SNP Silent 1 157804402 G A 39 30 BRCA BR-MEX-184 EDN2 SNP Missense_Mutation 1 41945075 C T 19 46 BRCA BR-MEX-184 CDH15 SNP Missense_Mutation 16 89257772 C G 25 52 BRCA BR-MEX-184 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA BR-MEX-184 TBCCD1 SNP Silent 3 186272405 A G 2 49 BRCA BR-MEX-184 ALS2CL SNP Missense_Mutation 3 46722820 G A 39 57 BRCA BR-MEX-184 PCDHB1 SNP Silent 5 140431784 G A 38 30 BRCA BR-MEX-184 GPRC6A SNP Silent 6 117113764 T C 52 48 BRCA BR-MEX-184 ITPR3 SNP Splice_Site 6 33644791 G A 34 80 BRCA BR-MEX-184 LMBRD1 SNP Silent 6 70410693 T C 62 49 BRCA BR-MEX-184 GPR124 SNP Missense_Mutation 8 37691600 G A 38 59 BRCA BR-MEX-186 MGST3 SNP Missense_Mutation 1 165619167 A G 4 74 BRCA BR-MEX-186 SMG7 SNP Silent 1 183514423 G A 38 49 BRCA BR-MEX-186 POLA2 SNP Missense_Mutation 11 65064625 G A 38 93 BRCA BR-MEX-186 KLHDC5 SNP Missense_Mutation 12 27951028 C T 31 40 BRCA BR-MEX-186 TMBIM6 SNP Missense_Mutation 12 50146796 A G 3 90 BRCA BR-MEX-186 SNX33 SNP Silent 15 75941560 G A 46 56 BRCA BR-MEX-186 RNF138 SNP Missense_Mutation 18 29709107 A T 5 67 BRCA BR-MEX-186 SYT3 SNP Silent 19 51128485 G A 38 53 BRCA BR-MEX-186 ZNF419 SNP Missense_Mutation 19 58005147 T G 56 79 BRCA BR-MEX-186 MUC16 SNP Missense_Mutation 19 9045860 G T 47 55 BRCA BR-MEX-186 TMC2 SNP Missense_Mutation 20 2591173 C T 19 65 BRCA BR-MEX-186 TRPM2 SNP Nonsense_Mutation 21 45838349 G A 43 74 BRCA BR-MEX-186 APEX2 SNP Missense_Mutation 23 55033135 G C 39 92 BRCA BR-MEX-186 MLL3 SNP Splice_Site 7 152012424 C A 20 90 BRCA BR-MEX-186 PALM2-AKAP2 SNP Missense_Mutation 9 112705364 G A 38 47 BRCA BR-MEX-186 FCN1 SNP Missense_Mutation 9 137809657 G A 46 49 BRCA BR-MEX-189 CELSR2 SNP Silent 1 109805566 C T 29 82 BRCA BR-MEX-189 IGSF8 SNP Missense_Mutation 1 160064823 G A 41 59 BRCA BR-MEX-189 PTPN14 SNP De_novo_Start_OutOfFrame 1 214638190 C T 19 76 BRCA BR-MEX-189 CABC1 SNP Missense_Mutation 1 227170451 T C 55 64 BRCA BR-MEX-189 FMN2 SNP Missense_Mutation 1 240371710 C T 22 71 BRCA BR-MEX-189 MEGF6 SNP Missense_Mutation 1 3422037 C G 30 66 BRCA BR-MEX-189 DFFB SNP Missense_Mutation 1 3782342 G T 41 49 BRCA BR-MEX-189 NUP160 SNP Missense_Mutation 11 47819802 T C 58 88 BRCA BR-MEX-189 OR51B5 SNP Missense_Mutation 11 5363829 C A 32 50 BRCA BR-MEX-189 CAPN5 SNP Silent 11 76795941 G A 40 25 BRCA BR-MEX-189 FAT3 SNP Missense_Mutation 11 92085550 T G 64 91 BRCA BR-MEX-189 ANAPC5 SNP Silent 12 121756167 G A 47 32 BRCA BR-MEX-189 POLE SNP Missense_Mutation 12 133219884 C T 27 40 BRCA BR-MEX-189 SPATS2 SNP Missense_Mutation 12 49888642 G A 44 60 BRCA BR-MEX-189 SCNN1A SNP Silent 12 6483839 C T 27 31 BRCA BR-MEX-189 FAM90A1 SNP Silent 12 8374868 G A 41 42 BRCA BR-MEX-189 TRPC4 SNP Missense_Mutation 13 38211114 C T 30 83 BRCA BR-MEX-189 AHNAK2 SNP Missense_Mutation 14 105411871 C T 28 60 BRCA BR-MEX-189 CLMN SNP Missense_Mutation 14 95670223 T A 56 53 BRCA BR-MEX-189 GCOM1 SNP Nonsense_Mutation 15 58006740 C T 25 84 BRCA BR-MEX-189 MEGF11 SNP Missense_Mutation 15 66273209 G T 42 57 BRCA BR-MEX-189 PARP6 SNP Missense_Mutation 15 72559149 C G 20 74 BRCA BR-MEX-189 HCN4 SNP Silent 15 73616590 G A 33 51 BRCA BR-MEX-189 XYLT1 SNP Missense_Mutation 16 17353252 G A 46 69 BRCA BR-MEX-189 NLRC3 SNP Silent 16 3598732 G A 40 33 BRCA BR-MEX-189 IFT20 SNP Missense_Mutation 17 26656297 G A 37 46 BRCA BR-MEX-189 C17orf104 SNP Missense_Mutation 17 42744581 T A 52 61 BRCA BR-MEX-189 TOM1L1 SNP Missense_Mutation 17 53016349 C G 20 50 BRCA BR-MEX-189 TP53 SNP Missense_Mutation 17 7577538 C T 23 80 BRCA BR-MEX-189 CSNK1G2 SNP Missense_Mutation 19 1978686 C G 18 67 BRCA BR-MEX-189 PNMAL1 SNP Silent 19 46973315 G A 39 36 BRCA BR-MEX-189 TRPM8 SNP Missense_Mutation 2 234847729 A C 8 88 BRCA BR-MEX-189 ITSN2 SNP Missense_Mutation 2 24494669 C G 24 60 BRCA BR-MEX-189 ASB3 SNP Missense_Mutation 2 53955957 G A 33 73 BRCA BR-MEX-189 C2orf42 SNP Missense_Mutation 2 70408736 C T 19 71 BRCA BR-MEX-189 CHRNA4 SNP Missense_Mutation 20 61982141 C T 31 98 BRCA BR-MEX-189 CNKSR2 SNP Missense_Mutation 23 21667081 G C 33 95 BRCA BR-MEX-189 ? SNP Missense_Mutation 23 51150820 G C 46 41 BRCA BR-MEX-189 PHKA1 SNP Silent 23 71872406 G A 34 64 BRCA BR-MEX-189 ZCCHC5 SNP Missense_Mutation 23 77913371 G A 35 52 BRCA BR-MEX-189 NAA15 SNP Missense_Mutation 4 140262197 C G 29 98 BRCA BR-MEX-189 TTC37 SNP Missense_Mutation 5 94839611 C T 26 74 BRCA BR-MEX-189 HIST1H4C SNP Silent 6 26104244 C T 30 52 BRCA BR-MEX-189 EEF1A1 SNP Missense_Mutation 6 74228896 A G 12 89 BRCA BR-MEX-189 CASP2 SNP Missense_Mutation 7 143002132 C G 24 83 BRCA BR-MEX-189 OR2A14 SNP Missense_Mutation 7 143826872 G A 38 68 BRCA BR-MEX-189 TXNDC3 SNP Nonsense_Mutation 7 37889884 C T 19 53 BRCA BR-MEX-189 URGCP SNP Missense_Mutation 7 43917628 C G 30 42 BRCA BR-MEX-189 RHBDD2 SNP Missense_Mutation 7 75511419 C T 31 53 BRCA BR-MEX-189 FZD6 SNP Missense_Mutation 8 104341964 G C 33 97 BRCA BR-MEX-189 ATAD2 SNP Missense_Mutation 8 124360428 C T 17 83 BRCA BR-MEX-189 MYC SNP Missense_Mutation 8 128753155 G A 37 69 BRCA BR-MEX-189 ZNF696 SNP Missense_Mutation 8 144378912 G A 38 49 BRCA BR-MEX-189 SURF6 SNP Silent 9 136199104 C T 27 42 BRCA BR-MEX-189 FAM69B SNP Missense_Mutation 9 139612054 G T 38 58 BRCA BR-MEX-189 TRPM3 SNP Missense_Mutation 9 73426130 C T 27 74 BRCA BR-MEX-189 TRPM3 SNP Silent 9 73479419 T C 52 54 BRCA BR-MEX-189 PTPRD SNP Missense_Mutation 9 8492893 G C 46 83 BRCA BR-MEX-191 POGZ SNP Missense_Mutation 1 151377925 C T 30 71 BRCA BR-MEX-191 ADAR SNP Missense_Mutation 1 154562791 G C 33 100 BRCA BR-MEX-191 INSRR SNP Missense_Mutation 1 156811211 C T 30 55 BRCA BR-MEX-191 TMEM82 SNP Missense_Mutation 1 16074123 C G 32 69 BRCA BR-MEX-191 NOS1AP SNP Missense_Mutation 1 162337072 G A 37 50 BRCA BR-MEX-191 METTL13 SNP Missense_Mutation 1 171765849 G A 45 60 BRCA BR-MEX-191 LHX9 SNP Missense_Mutation 1 197896833 G A 45 99 BRCA BR-MEX-191 ADIPOR1 SNP Missense_Mutation 1 202920096 C G 32 64 BRCA BR-MEX-191 CD34 SNP Missense_Mutation 1 208062031 C G 24 73 BRCA BR-MEX-191 USH2A SNP Missense_Mutation 1 215990524 C T 29 63 BRCA BR-MEX-191 RAB3GAP2 SNP Missense_Mutation 1 220324607 G C 33 35 BRCA BR-MEX-191 ITPKB SNP Missense_Mutation 1 226924676 G C 45 66 BRCA BR-MEX-191 SNAP47 SNP Missense_Mutation 1 227946884 G A 35 54 BRCA BR-MEX-191 TARBP1 SNP Missense_Mutation 1 234534239 C G 29 65 BRCA BR-MEX-191 NLRP3 SNP Missense_Mutation 1 247587724 C T 27 49 BRCA BR-MEX-191 RPS6KA1 SNP Silent 1 26898345 G A 45 59 BRCA BR-MEX-191 TXLNA SNP Missense_Mutation 1 32646028 G C 37 75 BRCA BR-MEX-191 DFFB SNP Missense_Mutation 1 3784601 G A 39 85 BRCA BR-MEX-191 TIE1 SNP Splice_site 1 43784908 C T 29 60 BRCA BR-MEX-191 KDM4A SNP Silent 1 44137438 C T 29 62 BRCA BR-MEX-191 DMBX1 SNP Missense_Mutation 1 46976751 G C 45 66 BRCA BR-MEX-191 SPATA6 SNP Silent 1 48771545 C T 32 72 BRCA BR-MEX-191 HPS6 SNP Missense_Mutation 10 103826756 G A 40 39 BRCA BR-MEX-191 PDCD4 SNP Missense_Mutation 10 112653904 A G 8 80 BRCA BR-MEX-191 ACSL5 SNP Silent 10 114181778 G A 45 36 BRCA BR-MEX-191 DOCK1 SNP Silent 10 128908605 C T 32 63 BRCA BR-MEX-191 OPTN SNP Missense_Mutation 10 13151184 G T 41 68 BRCA BR-MEX-191 DCLRE1C SNP Missense_Mutation 10 14951318 C T 29 60 BRCA BR-MEX-191 RPP38 SNP Missense_Mutation 10 15146109 C G 30 68 BRCA BR-MEX-191 CACNB2 SNP Missense_Mutation 10 18690929 G T 33 89 BRCA BR-MEX-191 MYO3A SNP Missense_Mutation 10 26482172 C A 22 70 BRCA BR-MEX-191 SVIL SNP Missense_Mutation 10 29822269 G T 45 81 BRCA BR-MEX-191 DIP2C SNP Silent 10 428673 G C 45 59 BRCA BR-MEX-191 ALOX5 SNP Missense_Mutation 10 45919559 G A 45 95 BRCA BR-MEX-191 DDX50 SNP Missense_Mutation 10 70694601 G C 41 94 BRCA BR-MEX-191 YAP1 SNP Missense_Mutation 11 101984929 C T 29 100 BRCA BR-MEX-191 MRVI1 SNP Missense_Mutation 11 10603527 C G 32 59 BRCA BR-MEX-191 ATM SNP Splice_Site 11 108202170 G A 33 99 BRCA BR-MEX-191 SIK2 SNP Silent 11 111593394 C G 21 53 BRCA BR-MEX-191 SIK3 SNP Missense_Mutation 11 116718246 G A 33 70 BRCA BR-MEX-191 TECTA SNP Missense_Mutation 11 121032788 C G 32 53 BRCA BR-MEX-191 SORL1 SNP Nonsense_Mutation 11 121384891 C T 21 100 BRCA BR-MEX-191 ADAMTS8 SNP Missense_Mutation 11 130286102 G A 43 82 BRCA BR-MEX-191 IGSF9B SNP Missense_Mutation 11 133790202 G C 47 95 BRCA BR-MEX-191 COPB1 SNP Missense_Mutation 11 14515967 G A 45 78 BRCA BR-MEX-191 PDE3B SNP Missense_Mutation 11 14880738 C G 30 51 BRCA BR-MEX-191 ANO3 SNP Nonsense_Mutation 11 26463594 C G 29 77 BRCA BR-MEX-191 MAPK8IP1 SNP Missense_Mutation 11 45924713 G A 45 74 BRCA BR-MEX-191 OR52I1 SNP Missense_Mutation 11 4615893 C G 32 66 BRCA BR-MEX-191 SPRYD5 SNP Splice_site 11 55658611 G C 45 56 BRCA BR-MEX-191 OR5M9 SNP Missense_Mutation 11 56230353 G C 33 53 BRCA BR-MEX-191 LRRC55 SNP Missense_Mutation 11 56949836 C T 27 65 BRCA BR-MEX-191 C11orf48 SNP Missense_Mutation 11 62435024 G A 41 60 BRCA BR-MEX-191 NAALADL1 SNP Missense_Mutation 11 64813370 T A 50 69 BRCA BR-MEX-191 FRMD8 SNP Missense_Mutation 11 65161533 G A 37 69 BRCA BR-MEX-191 SIPA1 SNP Missense_Mutation 11 65417904 C G 32 57 BRCA BR-MEX-191 CTSF SNP Missense_Mutation 11 66333338 G C 33 71 BRCA BR-MEX-191 PC SNP Missense_Mutation 11 66619271 C T 19 77 BRCA BR-MEX-191 RHOD SNP Silent 11 66839013 C T 29 50 BRCA BR-MEX-191 GRM5 SNP Missense_Mutation 11 88780710 C T 29 100 BRCA BR-MEX-191 GPR83 SNP Nonsense_Mutation 11 94113479 G A 45 63 BRCA BR-MEX-191 WEE1 SNP Missense_Mutation 11 9598777 G A 45 88 BRCA BR-MEX-191 SBF2 SNP Missense_Mutation 11 9810679 C T 29 100 BRCA BR-MEX-191 PAH SNP Missense_Mutation 12 103288531 C T 32 67 BRCA BR-MEX-191 GCN1L1 SNP Silent 12 120583096 C T 29 62 BRCA BR-MEX-191 PXN SNP Silent 12 120660682 C T 27 40 BRCA BR-MEX-191 ESPL1 SNP Missense_Mutation 12 53676084 C T 31 58 BRCA BR-MEX-191 OS9 SNP Missense_Mutation 12 58112049 G A 45 66 BRCA BR-MEX-191 METTL1 SNP Missense_Mutation 12 58163644 G A 40 65 BRCA BR-MEX-191 SCNN1A SNP Missense_Mutation 12 6483829 G T 42 52 BRCA BR-MEX-191 TAPBPL SNP Missense_Mutation 12 6566883 C G 29 84 BRCA BR-MEX-191 IRAK3 SNP Missense_Mutation 12 66638285 G C 45 61 BRCA BR-MEX-191 C1R SNP Missense_Mutation 12 7188474 C T 31 99 BRCA BR-MEX-191 BBS10 SNP Silent 12 76741998 G A 45 50 BRCA BR-MEX-191 PCCA SNP Splice_site 13 100962160 G A 37 97 BRCA BR-MEX-191 NAA16 SNP Silent 13 41943335 G A 33 47 BRCA BR-MEX-191 NAA16 SNP Splice_site 13 41947914 C G 29 94 BRCA BR-MEX-191 MYCBP2 SNP Silent 13 77713421 C T 32 78 BRCA BR-MEX-191 IPO5 SNP Splice_site 13 98668033 G T 45 100 BRCA BR-MEX-191 RNF31 SNP Missense_Mutation 14 24619538 A G 14 82 BRCA BR-MEX-191 TGM1 SNP Silent 14 24724586 G C 33 61 BRCA BR-MEX-191 SPTB SNP Missense_Mutation 14 65242109 C G 29 97 BRCA BR-MEX-191 DPF3 SNP Missense_Mutation 14 73181170 C T 27 60 BRCA BR-MEX-191 LGMN SNP Silent 14 93180775 G A 45 52 BRCA BR-MEX-191 MGA SNP Missense_Mutation 15 42003288 C T 32 58 BRCA BR-MEX-191 TUBGCP4 SNP Missense_Mutation 15 43689501 C T 29 100 BRCA BR-MEX-191 ZNF280D SNP Silent 15 56974484 G A 45 64 BRCA BR-MEX-191 FAM81A SNP Missense_Mutation 15 59752232 G A 45 80 BRCA BR-MEX-191 DENND4A SNP Silent 15 65964214 C G 31 50 BRCA BR-MEX-191 BBS4 SNP Missense_Mutation 15 72987548 C G 29 68 BRCA BR-MEX-191 ANPEP SNP Missense_Mutation 15 90347501 G A 45 93 BRCA BR-MEX-191 DNAH3 SNP Missense_Mutation 16 20946683 C G 30 86 BRCA BR-MEX-191 PKD1 SNP Missense_Mutation 16 2161006 C G 32 62 BRCA BR-MEX-191 IL21R SNP Silent 16 27454419 G A 43 44 BRCA BR-MEX-191 ATXN2L SNP Nonsense_Mutation 16 28843649 C G 29 67 BRCA BR-MEX-191 PKMYT1 SNP Missense_Mutation 16 3023200 C T 29 75 BRCA BR-MEX-191 PRSS8 SNP Missense_Mutation 16 31144213 C T 31 23 BRCA BR-MEX-191 ZNF200 SNP Missense_Mutation 16 3274253 C G 30 81 BRCA BR-MEX-191 ADCY9 SNP Missense_Mutation 16 4016837 C T 29 98 BRCA BR-MEX-191 ZNF500 SNP Missense_Mutation 16 4810552 G T 33 57 BRCA BR-MEX-191 SEPT12 SNP Nonsense_Mutation 16 4829784 G A 39 63 BRCA BR-MEX-191 SEC14L5 SNP Missense_Mutation 16 5057456 C T 29 80 BRCA BR-MEX-191 AMFR SNP Missense_Mutation 16 56435650 G A 41 54 BRCA BR-MEX-191 E2F4 SNP Missense_Mutation 16 67229871 C A 32 89 BRCA BR-MEX-191 TERF2 SNP Missense_Mutation 16 69419521 G T 45 77 BRCA BR-MEX-191 MYH4 SNP Silent 17 10348605 G A 37 42 BRCA BR-MEX-191 LGALS9 SNP Missense_Mutation 17 25970616 C G 30 50 BRCA BR-MEX-191 SUPT6H SNP Silent 17 27010351 G T 45 49 BRCA BR-MEX-191 C17orf75 SNP Missense_Mutation 17 30658878 C G 32 74 BRCA BR-MEX-191 SCPEP1 SNP Missense_Mutation 17 55074329 G C 33 74 BRCA BR-MEX-191 MPO SNP Missense_Mutation 17 56348162 G A 45 100 BRCA BR-MEX-191 TACO1 SNP Missense_Mutation 17 61684676 C G 32 54 BRCA BR-MEX-191 ABCA6 SNP Missense_Mutation 17 67119462 C T 29 59 BRCA BR-MEX-191 C17orf28 SNP Missense_Mutation 17 72948004 G C 33 55 BRCA BR-MEX-191 AZI1 SNP Missense_Mutation 17 79166627 C T 30 67 BRCA BR-MEX-191 FHOD3 SNP Missense_Mutation 18 34324104 C G 21 82 BRCA BR-MEX-191 CNN1 SNP Missense_Mutation 19 11660477 C T 31 78 BRCA BR-MEX-191 ZNF442 SNP Missense_Mutation 19 12460687 G C 33 42 BRCA BR-MEX-191 EMR2 SNP Silent 19 14865928 C T 31 11 BRCA BR-MEX-191 KIAA1683 SNP Silent 19 18378122 G T 43 45 BRCA BR-MEX-191 KLHL26 SNP Silent 19 18775095 C G 29 56 BRCA BR-MEX-191 DOT1L SNP Missense_Mutation 19 2222245 G C 41 64 BRCA BR-MEX-191 PIP5K1C SNP Silent 19 3644197 C T 29 52 BRCA BR-MEX-191 SIPA1L3 SNP Missense_Mutation 19 38579444 G A 41 79 BRCA BR-MEX-191 ATCAY SNP Missense_Mutation 19 3918841 G C 45 66 BRCA BR-MEX-191 AKT2 SNP Missense_Mutation 19 40742257 G C 45 57 BRCA BR-MEX-191 LMTK3 SNP Missense_Mutation 19 49002411 C T 30 53 BRCA BR-MEX-191 ZNF432 SNP Missense_Mutation 19 52538568 G C 33 43 BRCA BR-MEX-191 TTYH1 SNP Missense_Mutation 19 54932471 T C 62 81 BRCA BR-MEX-191 KIR3DL1 SNP Nonsense_Mutation 19 55331284 G T 33 51 BRCA BR-MEX-191 FBN3 SNP Missense_Mutation 19 8138031 C T 19 55 BRCA BR-MEX-191 ZC3H8 SNP Nonsense_Mutation 2 113012536 G C 45 68 BRCA BR-MEX-191 ERCC3 SNP Silent 2 128028991 G C 41 53 BRCA BR-MEX-191 LCT SNP Silent 2 136566320 C T 31 47 BRCA BR-MEX-191 THSD7B SNP Silent 2 137928339 C T 29 49 BRCA BR-MEX-191 TMEFF2 SNP Nonsense_Mutation 2 193059202 C A 31 68 BRCA BR-MEX-191 HECW2 SNP Missense_Mutation 2 197080652 C T 31 100 BRCA BR-MEX-191 MAP2 SNP Missense_Mutation 2 210558119 G A 33 60 BRCA BR-MEX-191 SLC16A14 SNP Nonsense_Mutation 2 230902158 G A 45 67 BRCA BR-MEX-191 ALPP SNP Missense_Mutation 2 233245355 G C 45 61 BRCA BR-MEX-191 HDLBP SNP Silent 2 242178104 G A 45 54 BRCA BR-MEX-191 OTOF SNP Missense_Mutation 2 26686896 C T 27 63 BRCA BR-MEX-191 GALNT14 SNP Silent 2 31360914 G A 37 48 BRCA BR-MEX-191 UGP2 SNP Missense_Mutation 2 64114665 C G 32 100 BRCA BR-MEX-191 SLC4A5 SNP Missense_Mutation 2 74474254 C T 29 95 BRCA BR-MEX-191 KIF16B SNP Missense_Mutation 20 16486469 G C 33 69 BRCA BR-MEX-191 FAM83D SNP Missense_Mutation 20 37580315 C T 29 51 BRCA BR-MEX-191 FAM83D SNP Silent 20 37580527 C T 29 52 BRCA BR-MEX-191 MATN4 SNP Missense_Mutation 20 43932985 C T 27 96 BRCA BR-MEX-191 ZNF831 SNP Missense_Mutation 20 57767443 C T 23 59 BRCA BR-MEX-191 LSM14B SNP Missense_Mutation 20 60704899 G T 33 74 BRCA BR-MEX-191 MYT1 SNP Silent 20 62871798 C G 32 56 BRCA BR-MEX-191 USP25 SNP Missense_Mutation 21 17205800 G C 33 62 BRCA BR-MEX-191 NCAM2 SNP Missense_Mutation 21 22658648 G C 33 94 BRCA BR-MEX-191 USP16 SNP Missense_Mutation 21 30414404 C G 29 55 BRCA BR-MEX-191 ATF4 SNP Missense_Mutation 22 39917858 G A 33 81 BRCA BR-MEX-191 MEI1 SNP Nonsense_Mutation 22 42177389 C T 29 79 BRCA BR-MEX-191 COL4A5 SNP Missense_Mutation 23 107866013 C G 32 48 BRCA BR-MEX-191 FLNA SNP Missense_Mutation 23 153579315 C T 30 99 BRCA BR-MEX-191 SRPX SNP Missense_Mutation 23 38033517 C T 30 95 BRCA BR-MEX-191 KDM5C SNP Missense_Mutation 23 53230767 C G 32 94 BRCA BR-MEX-191 HUWE1 SNP Silent 23 53595771 G A 33 75 BRCA BR-MEX-191 LAS1L SNP Missense_Mutation 23 64749560 G A 45 50 BRCA BR-MEX-191 NLGN3 SNP Missense_Mutation 23 70373380 G C 33 94 BRCA BR-MEX-191 TMEM111 SNP Missense_Mutation 3 10028301 C A 22 93 BRCA BR-MEX-191 TFG SNP Splice_site 3 100451514 C T 29 97 BRCA BR-MEX-191 IMPG2 SNP Missense_Mutation 3 100992530 C A 32 69 BRCA BR-MEX-191 KPNA1 SNP Missense_Mutation 3 122146005 C G 29 95 BRCA BR-MEX-191 PCCB SNP Missense_Mutation 3 136016889 C G 30 95 BRCA BR-MEX-191 COPB2 SNP Silent 3 139077872 G A 33 52 BRCA BR-MEX-191 PLS1 SNP Silent 3 142422751 G A 35 48 BRCA BR-MEX-191 CAPN7 SNP Missense_Mutation 3 15271977 G A 45 85 BRCA BR-MEX-191 MFSD1 SNP Missense_Mutation 3 158538024 G A 45 97 BRCA BR-MEX-191 SI SNP Missense_Mutation 3 164780235 C T 32 96 BRCA BR-MEX-191 EIF4G1 SNP Silent 3 184038750 G A 33 74 BRCA BR-MEX-191 VPS8 SNP Nonsense_Mutation 3 184580790 C T 29 88 BRCA BR-MEX-191 EIF4A2 SNP Missense_Mutation 3 186503832 G A 33 78 BRCA BR-MEX-191 KCNH8 SNP Missense_Mutation 3 19554535 A T 11 65 BRCA BR-MEX-191 CMTM6 SNP Missense_Mutation 3 32529444 C G 29 81 BRCA BR-MEX-191 WDR48 SNP Missense_Mutation 3 39118639 G C 45 100 BRCA BR-MEX-191 ULK4 SNP Silent 3 41607568 G A 45 57 BRCA BR-MEX-191 CCR2 SNP Missense_Mutation 3 46399180 C G 32 54 BRCA BR-MEX-191 CCR2 SNP Missense_Mutation 3 46399405 C G 32 51 BRCA BR-MEX-191 SLC25A20 SNP Missense_Mutation 3 48921550 G A 40 45 BRCA BR-MEX-191 HYAL1 SNP Silent 3 50337926 C T 32 47 BRCA BR-MEX-191 STAB1 SNP Silent 3 52558178 C G 32 55 BRCA BR-MEX-191 FILIP1L SNP Missense_Mutation 3 99567747 C T 32 100 BRCA BR-MEX-191 EMCN SNP Silent 4 101331505 G A 36 49 BRCA BR-MEX-191 NKX3-2 SNP Splice_site 4 13544151 G A 38 50 BRCA BR-MEX-191 GAB1 SNP Missense_Mutation 4 144354748 C G 32 65 BRCA BR-MEX-191 TDO2 SNP Nonsense_Mutation 4 156838575 C T 29 100 BRCA BR-MEX-191 TDO2 SNP Nonsense_Mutation 4 156839361 C G 29 98 BRCA BR-MEX-191 LCORL SNP Missense_Mutation 4 17974463 C G 32 81 BRCA BR-MEX-191 FGFR3 SNP Silent 4 1807598 C T 29 51 BRCA BR-MEX-191 KCTD8 SNP Silent 4 44449728 G A 45 61 BRCA BR-MEX-191 ADAMTS3 SNP Silent 4 73149255 G C 45 44 BRCA BR-MEX-191 AFAP1 SNP Missense_Mutation 4 7780519 G T 41 44 BRCA BR-MEX-191 MCC SNP Missense_Mutation 5 112364650 C T 29 94 BRCA BR-MEX-191 TRIM36 SNP Missense_Mutation 5 114482834 G A 45 52 BRCA BR-MEX-191 BRD8 SNP Missense_Mutation 5 137475766 G C 33 50 BRCA BR-MEX-191 KIAA0947 SNP Missense_Mutation 5 5462326 C G 32 50 BRCA BR-MEX-191 SFRS12 SNP Silent 5 65466572 A G 3 52 BRCA BR-MEX-191 CMYA5 SNP Missense_Mutation 5 79095251 A G 7 55 BRCA BR-MEX-191 VCAN SNP Silent 5 82835887 C T 31 21 BRCA BR-MEX-191 GPR98 SNP Missense_Mutation 5 90106143 G T 45 46 BRCA BR-MEX-191 GPR98 SNP Missense_Mutation 5 90106693 G T 45 62 BRCA BR-MEX-191 C6orf182 SNP Missense_Mutation 6 109468085 G C 33 54 BRCA BR-MEX-191 SYNE1 SNP Missense_Mutation 6 152757218 C T 32 94 BRCA BR-MEX-191 JARID2 SNP Missense_Mutation 6 15487620 G C 33 73 BRCA BR-MEX-191 GPLD1 SNP Splice_site 6 24433593 C G 29 82 BRCA BR-MEX-191 BTN3A3 SNP Splice_Site 6 26448955 G A 33 68 BRCA BR-MEX-191 ZNF165 SNP Missense_Mutation 6 28057159 G A 45 49 BRCA BR-MEX-191 NKAPL SNP Nonsense_Mutation 6 28228014 C T 29 89 BRCA BR-MEX-191 RIPK1 SNP Missense_Mutation 6 3104504 C G 32 69 BRCA BR-MEX-191 MICB SNP Missense_Mutation 6 31474837 G C 33 69 BRCA BR-MEX-191 TUBB2A SNP Missense_Mutation 6 3154963 C T 32 99 BRCA BR-MEX-191 TUBB2B SNP Missense_Mutation 6 3226851 T C 51 91 BRCA BR-MEX-191 MDGA1 SNP Silent 6 37619938 G T 43 48 BRCA BR-MEX-191 DNAH8 SNP Missense_Mutation 6 38899616 C G 29 57 BRCA BR-MEX-191 CUL7 SNP Missense_Mutation 6 43014631 C T 30 87 BRCA BR-MEX-191 AARS2 SNP Missense_Mutation 6 44270202 C T 29 61 BRCA BR-MEX-191 AARS2 SNP Silent 6 44272011 C T 29 51 BRCA BR-MEX-191 CDYL SNP Missense_Mutation 6 4937841 G A 37 100 BRCA BR-MEX-191 BAI3 SNP Missense_Mutation 6 70071345 G A 45 96 BRCA BR-MEX-191 PM20D2 SNP Missense_Mutation 6 89871929 G A 33 66 BRCA BR-MEX-191 POU3F2 SNP Nonsense_Mutation 6 99283533 G T 37 77 BRCA BR-MEX-191 LAMB1 SNP Missense_Mutation 7 107564494 C G 32 85 BRCA BR-MEX-191 TRIM24 SNP Missense_Mutation 7 138269676 G A 33 78 BRCA BR-MEX-191 SVOPL SNP Missense_Mutation 7 138313099 G C 33 50 BRCA BR-MEX-191 ZNF282 SNP Missense_Mutation 7 148921382 G C 33 64 BRCA BR-MEX-191 SSPO SNP Silent 7 149512399 C G 32 48 BRCA BR-MEX-191 NUB1 SNP Missense_Mutation 7 151046253 G T 41 83 BRCA BR-MEX-191 DPP6 SNP Missense_Mutation 7 154263951 G A 45 78 BRCA BR-MEX-191 SOSTDC1 SNP Silent 7 16502323 G A 45 70 BRCA BR-MEX-191 VPS13B SNP Missense_Mutation 8 100711838 G C 33 68 BRCA BR-MEX-191 GRHL2 SNP Silent 8 102656428 G A 33 64 BRCA BR-MEX-191 CSMD3 SNP Silent 8 113317113 G A 33 41 BRCA BR-MEX-191 EIF3H SNP Silent 8 117671134 A G 8 49 BRCA BR-MEX-191 ADCY8 SNP Missense_Mutation 8 131916158 C T 29 100 BRCA BR-MEX-191 PLEC SNP Missense_Mutation 8 144995622 G C 41 72 BRCA BR-MEX-191 GPAA1 SNP Missense_Mutation 8 145138183 C A 31 59 BRCA BR-MEX-191 MTMR7 SNP Missense_Mutation 8 17169082 G C 45 96 BRCA BR-MEX-191 KIAA1967 SNP Nonsense_Mutation 8 22471694 C G 29 74 BRCA BR-MEX-191 RB1CC1 SNP Silent 8 53570319 T C 49 48 BRCA BR-MEX-191 ZFHX4 SNP Missense_Mutation 8 77618825 G A 45 74 BRCA BR-MEX-191 FKBP15 SNP Silent 9 115965295 G A 45 51 BRCA BR-MEX-191 ASS1 SNP Nonsense_Mutation 9 133327668 C A 31 94 BRCA BR-MEX-191 BAT2L1 SNP Silent 9 134321945 G T 39 60 BRCA BR-MEX-191 NELF SNP Silent 9 140351884 C T 30 76 BRCA BR-MEX-191 IFNA21 SNP Silent 9 21166243 C T 29 52 BRCA BR-MEX-191 APTX SNP Splice_site 9 33001603 C G 32 55 BRCA BR-MEX-191 RECK SNP Missense_Mutation 9 36102125 G A 33 93 BRCA BR-MEX-191 FRMPD1 SNP Silent 9 37740391 C T 21 50 BRCA BR-MEX-191 NTRK2 SNP Missense_Mutation 9 87549090 C G 29 65 BRCA BR-MEX-191 HIATL1 SNP Missense_Mutation 9 97200796 G A 45 93 BRCA BR-MEX-191 PTCH1 SNP Silent 9 98268846 C T 29 59 BRCA BR-MEX-192 ZNF672 SNP Silent 1 249142523 C T 27 56 BRCA BR-MEX-192 ANO3 SNP Missense_Mutation 11 26556047 G A 37 92 BRCA BR-MEX-192 IPO7 SNP Missense_Mutation 11 9446513 T G 61 65 BRCA BR-MEX-192 WASF3 SNP Missense_Mutation 13 27250750 G A 38 98 BRCA BR-MEX-192 INF2 SNP Splice_site 14 105246551 C T 30 95 BRCA BR-MEX-192 GREM1 SNP Nonsense_Mutation 15 33023037 C A 31 82 BRCA BR-MEX-192 TP53 SNP Missense_Mutation 17 7577121 G A 38 65 BRCA BR-MEX-192 HKR1 SNP Missense_Mutation 19 37853462 C G 29 52 BRCA BR-MEX-192 SHD SNP Silent 19 4284794 A G 7 16 BRCA BR-MEX-192 PPM1F SNP Missense_Mutation 22 22288511 G C 42 80 BRCA BR-MEX-192 ZC3H7B SNP Missense_Mutation 22 41728220 G A 40 40 BRCA BR-MEX-192 SH3KBP1 SNP Silent 23 19854324 G C 47 76 BRCA BR-MEX-192 KDM5C SNP Missense_Mutation 23 53231149 G A 39 80 BRCA BR-MEX-192 HUWE1 SNP Missense_Mutation 23 53566768 C T 31 89 BRCA BR-MEX-192 SLC6A1 SNP Splice_site 3 11064023 C T 27 99 BRCA BR-MEX-192 MFN1 SNP Silent 3 179103407 G A 38 27 BRCA BR-MEX-192 FAM19A4 SNP Missense_Mutation 3 68782298 G A 38 78 BRCA BR-MEX-192 DCHS2 SNP Silent 4 155256111 A G 7 43 BRCA BR-MEX-192 STK32B SNP Silent 4 5461856 C T 27 45 BRCA BR-MEX-192 PKD2 SNP Missense_Mutation 4 88959472 A G 5 78 BRCA BR-MEX-192 MAP1B SNP Missense_Mutation 5 71490215 T C 55 94 BRCA BR-MEX-192 MAP1B SNP Missense_Mutation 5 71499572 C T 23 64 BRCA BR-MEX-192 CNR1 SNP Missense_Mutation 6 88854338 T C 59 93 BRCA BR-MEX-192 PIK3CG SNP Missense_Mutation 7 106509373 G A 42 69 BRCA BR-MEX-192 PTPRN2 SNP Missense_Mutation 7 157387998 C T 31 98 BRCA BR-MEX-193 IQGAP3 SNP Missense_Mutation 1 156526434 G C 34 64 BRCA BR-MEX-193 BAT2L2 SNP Silent 1 171519334 T G 60 54 BRCA BR-MEX-193 CACNA1E SNP Missense_Mutation 1 181745258 G A 40 100 BRCA BR-MEX-193 PPP1R12B SNP Missense_Mutation 1 202531928 C A 30 55 BRCA BR-MEX-193 ELTD1 SNP Missense_Mutation 1 79387407 C G 28 51 BRCA BR-MEX-193 SLK SNP Missense_Mutation 10 105785473 T A 50 92 BRCA BR-MEX-193 MASTL SNP Missense_Mutation 10 27459011 A C 7 60 BRCA BR-MEX-193 KIF5B SNP Splice_Site 10 32311186 C G 28 88 BRCA BR-MEX-193 SBF2 SNP Silent 11 10051318 C A 18 52 BRCA BR-MEX-193 AGBL2 SNP Missense_Mutation 11 47707469 C A 17 96 BRCA BR-MEX-193 OR52B2 SNP Missense_Mutation 11 6190984 A C 6 61 BRCA BR-MEX-193 INTS5 SNP Missense_Mutation 11 62416143 A G 5 55 BRCA BR-MEX-193 FLRT1 SNP Missense_Mutation 11 63884472 A G 7 50 BRCA BR-MEX-193 SNX32 SNP Silent 11 65616954 C T 24 59 BRCA BR-MEX-193 FOSL1 SNP Missense_Mutation 11 65660457 C T 28 67 BRCA BR-MEX-193 MAPKAPK5 SNP Missense_Mutation 12 112321488 G A 37 96 BRCA BR-MEX-193 C12orf51 SNP Missense_Mutation 12 112630418 C T 27 57 BRCA BR-MEX-193 KIF5A SNP Silent 12 57968917 C G 32 52 BRCA BR-MEX-193 FRS2 SNP Silent 12 69968156 T C 59 56 BRCA BR-MEX-193 DLK1 SNP Missense_Mutation 14 101194760 C T 22 67 BRCA BR-MEX-193 YLPM1 SNP Silent 14 75279383 G A 45 45 BRCA BR-MEX-193 MYO5A SNP Missense_Mutation 15 52632470 T A 62 79 BRCA BR-MEX-193 C15orf44 SNP Missense_Mutation 15 65871778 C T 30 88 BRCA BR-MEX-193 TELO2 SNP Silent 16 1550679 G A 35 51 BRCA BR-MEX-193 ACSM2A SNP Missense_Mutation 16 20480985 G T 34 51 BRCA BR-MEX-193 CREBBP SNP Splice_Site 16 3790551 C A 24 100 BRCA BR-MEX-193 CBX2 SNP Silent 17 77758460 C T 23 33 BRCA BR-MEX-193 MC5R SNP Missense_Mutation 18 13826450 G C 39 59 BRCA BR-MEX-193 TSHZ3 SNP Nonsense_Mutation 19 31768165 G T 45 99 BRCA BR-MEX-193 NFKBID SNP Splice_Site 19 36387961 C T 24 49 BRCA BR-MEX-193 SIGLEC5 SNP Missense_Mutation 19 52131281 A G 11 44 BRCA BR-MEX-193 MUC16 SNP Missense_Mutation 19 9006669 G T 48 48 BRCA BR-MEX-193 ANKRD5 SNP Silent 20 10025077 A G 11 53 BRCA BR-MEX-193 LRRC3 SNP Missense_Mutation 21 45876541 G A 38 72 BRCA BR-MEX-193 MCAT SNP Silent 22 43533105 C G 29 57 BRCA BR-MEX-193 BCORL1 SNP Nonsense_Mutation 23 129162789 C T 19 65 BRCA BR-MEX-193 SLC10A3 SNP Missense_Mutation 23 153716033 G A 40 82 BRCA BR-MEX-193 F8 SNP Missense_Mutation 23 154157140 T C 62 69 BRCA BR-MEX-193 DMD SNP Missense_Mutation 23 32867913 G A 35 81 BRCA BR-MEX-193 ITGB1BP2 SNP Missense_Mutation 23 70522267 A G 14 72 BRCA BR-MEX-193 COL6A6 SNP Nonsense_Mutation 3 130361855 C T 27 70 BRCA BR-MEX-193 CNTN6 SNP Missense_Mutation 3 1443125 C A 21 93 BRCA BR-MEX-193 MECOM SNP Missense_Mutation 3 168833735 G C 41 96 BRCA BR-MEX-193 C3orf59 SNP Missense_Mutation 3 192516987 T G 51 77 BRCA BR-MEX-193 COL7A1 SNP Missense_Mutation 3 48617743 C T 19 74 BRCA BR-MEX-193 PROS1 SNP Missense_Mutation 3 93603712 C T 31 90 BRCA BR-MEX-193 ARAP2 SNP Missense_Mutation 4 36231059 C T 28 56 BRCA BR-MEX-193 MARCH6 SNP Missense_Mutation 5 10415624 C T 31 100 BRCA BR-MEX-193 MYO10 SNP Silent 5 16668572 C T 24 56 BRCA BR-MEX-193 DAB2 SNP Missense_Mutation 5 39382863 C G 22 99 BRCA BR-MEX-193 JARID2 SNP Missense_Mutation 6 15374409 C G 32 95 BRCA BR-MEX-193 SLC17A1 SNP Missense_Mutation 6 25813096 A G 8 44 BRCA BR-MEX-193 UHRF1BP1 SNP Silent 6 34825177 C T 30 35 BRCA BR-MEX-193 GCK SNP Splice_Site 7 44185095 C G 18 100 BRCA BR-MEX-193 MYOM2 SNP Missense_Mutation 8 2071203 C A 24 55 BRCA BR-MEX-193 SMARCA2 SNP Splice_site 9 2097386 G A 43 100 BRCA BR-MEX-198 ASH1L DEL Frame_Shift_Del 1 155448618 TTTTT - 56 77 BRCA BR-MEX-198 OR2T3 SNP Missense 1 248637199 T C 62 46 BRCA BR-MEX-198 TM2D1 SNP Missense_Mutation 1 62190776 G A 39 62 BRCA BR-MEX-198 PNLIPRP2 SNP Missense_Mutation 10 118385556 G T 41 51 BRCA BR-MEX-198 UCN3 SNP Silent 10 5416148 G A 38 37 BRCA BR-MEX-198 NLRP6 INS Frame_Shift_Ins 11 280539 - C 42 52 BRCA BR-MEX-198 GLTP SNP Missense_Mutation 12 110290508 A G 9 86 BRCA BR-MEX-198 GCN1L1 SNP Silent 12 120616670 C T 31 47 BRCA BR-MEX-198 KRT86 SNP Silent 12 52699062 C T 23 18 BRCA BR-MEX-198 HSP90AA1 SNP Missense 14 102552305 G C 35 73 BRCA BR-MEX-198 ACOT6 DEL Frame_Shift_Del 14 74086347 A - 9 53 BRCA BR-MEX-198 ISCA2 SNP Nonsense_Mutation 14 74961063 C G 29 78 BRCA BR-MEX-198 TMEM85 SNP Missense_Mutation 15 34520701 G A 43 81 BRCA BR-MEX-198 LDHD SNP Missense 16 75146334 C T 27 47 BRCA BR-MEX-198 SRP68 SNP Missense_Mutation 17 74057612 T C 63 88 BRCA BR-MEX-198 ZNF431 SNP Silent 19 21366462 A G 11 46 BRCA BR-MEX-198 SLC7A9 SNP Silent 19 33350783 A G 7 23 BRCA BR-MEX-198 ZNF578 SNP Missense_Mutation 19 53015345 G A 45 50 BRCA BR-MEX-198 MAP2K7 SNP Splice_Site 19 7977080 G A 48 92 BRCA BR-MEX-198 POTEE SNP Missense 2 132021211 G A 39 76 BRCA BR-MEX-198 GKN2 SNP Missense_Mutation 2 69177317 C T 27 76 BRCA BR-MEX-198 MYT1 SNP Silent 20 62854467 T C 58 50 BRCA BR-MEX-198 PWP2 SNP Silent 21 45535718 C T 27 50 BRCA BR-MEX-198 SLITRK2 SNP Missense_Mutation 23 144905032 G T 36 52 BRCA BR-MEX-198 GPR50 SNP Nonsense_Mutation 23 150348959 C T 23 75 BRCA BR-MEX-198 MYLK SNP Silent 3 123444846 C A 25 80 BRCA BR-MEX-198 APBB2 SNP Missense_Mutation 4 41016317 T C 61 58 BRCA BR-MEX-198 IQGAP2 SNP Missense_Mutation 5 75906974 A T 12 89 BRCA BR-MEX-198 DTX2 SNP Missense 7 76109884 G A 42 79 BRCA BR-MEX-198 RIMS2 SNP Missense_Mutation 8 104709370 A G 9 92 BRCA BR-MEX-200 F11R SNP Missense_Mutation 1 160969475 A T 3 48 BRCA BR-MEX-200 TPR SNP Missense_Mutation 1 186296647 A G 14 76 BRCA BR-MEX-200 AVPR1B SNP Missense_Mutation 1 206224496 C A 26 50 BRCA BR-MEX-200 PTP4A2 SNP Missense_Mutation 1 32377414 T C 50 90 BRCA BR-MEX-200 GDI2 SNP Missense_Mutation 10 5827986 C T 27 86 BRCA BR-MEX-200 OR5I1 SNP Missense_Mutation 11 55703409 C A 29 57 BRCA BR-MEX-200 NUP107 SNP Silent 12 69115632 C T 32 55 BRCA BR-MEX-200 CHD8 SNP Nonsense_Mutation 14 21876961 C T 30 99 BRCA BR-MEX-200 EFTUD1 SNP Silent 15 82444518 T C 55 48 BRCA BR-MEX-200 ASB16 SNP Missense_Mutation 17 42248404 G A 38 73 BRCA BR-MEX-200 SYT3 SNP Missense_Mutation 19 51140602 G A 38 70 BRCA BR-MEX-200 CPS1 SNP Nonsense_Mutation 2 211518788 C T 23 64 BRCA BR-MEX-200 GTSE1 SNP Missense_Mutation 22 46712282 C A 29 81 BRCA BR-MEX-200 DPY19L2P2 SNP Missense 7 102850718 G C 33 53 BRCA BR-MEX-200 LAMB1 SNP Missense_Mutation 7 107591707 C T 30 100 BRCA BR-MEX-200 SOX17 DEL In_frame_Del 8 55370874 CGGGCC - 27 82 BRCA TCGA-A1-A0SB ABLIM1 SNP Missense_Mutation 10 116247760 T C 51 86 BRCA TCGA-A1-A0SB MAP6 SNP Missense_Mutation 11 75317003 G C 38 68 BRCA TCGA-A1-A0SB ADAMTS20 SNP Missense_Mutation 12 43944926 T C 49 88 BRCA TCGA-A1-A0SB SPTB SNP Missense_Mutation 14 65266493 T C 59 68 BRCA TCGA-A1-A0SB PIEZO1 SNP Missense_Mutation 16 88790292 T C 55 74 BRCA TCGA-A1-A0SB SOX15 SNP Missense_Mutation 17 7491739 T G 60 47 BRCA TCGA-A1-A0SB WIZ SNP Silent 19 15547798 T G 59 32 BRCA TCGA-A1-A0SB ZNF574 SNP Missense_Mutation 19 42585066 G A 33 81 BRCA TCGA-A1-A0SB OTOR SNP Missense_Mutation 20 16730581 G A 40 67 BRCA TCGA-A1-A0SB P2RY10 SNP Silent 23 78216689 C T 24 46 BRCA TCGA-A1-A0SB MYB INS Frame_Shift_Ins 6 135507043 - A 49 69 BRCA TCGA-A1-A0SB AGAP3 SNP Missense_Mutation 7 150840441 C T 19 85 BRCA TCGA-A1-A0SB STEAP1B DEL Frame_Shift_Del 7 22533452 CA - 29 52 BRCA TCGA-A1-A0SD KIRREL SNP Missense_Mutation 1 158054332 G A 39 70 BRCA TCGA-A1-A0SD DCAF8 SNP Silent 1 160210108 C T 32 56 BRCA TCGA-A1-A0SD TLR5 INS Frame_Shift_Ins 1 223284687 - A 41 86 BRCA TCGA-A1-A0SD SLC44A3 SNP Missense_Mutation 1 95293148 G A 45 64 BRCA TCGA-A1-A0SD ANK3 SNP Missense_Mutation 10 61834851 G C 47 88 BRCA TCGA-A1-A0SD SIDT2 SNP Missense_Mutation 11 117063930 A G 8 91 BRCA TCGA-A1-A0SD ZFP91 SNP Missense_Mutation 11 58381738 T A 49 89 BRCA TCGA-A1-A0SD HECTD4 SNP Missense_Mutation 12 112622620 C T 31 96 BRCA TCGA-A1-A0SD ZNF740 SNP Missense_Mutation 12 53581370 T C 53 81 BRCA TCGA-A1-A0SD WDR72 SNP Missense_Mutation 15 53907842 A T 16 48 BRCA TCGA-A1-A0SD PKD1 SNP Silent 16 2153508 C T 31 59 BRCA TCGA-A1-A0SD SLFN14 SNP Missense_Mutation 17 33884688 G A 37 50 BRCA TCGA-A1-A0SD EIF3G SNP Silent 19 10226187 G A 40 49 BRCA TCGA-A1-A0SD KLK15 SNP Missense_Mutation 19 51329938 C T 22 73 BRCA TCGA-A1-A0SD ZNF544 SNP Missense_Mutation 19 58773290 G C 45 46 BRCA TCGA-A1-A0SD LRP2 SNP Missense_Mutation 2 170070247 T G 50 81 BRCA TCGA-A1-A0SD SNX5 DEL In_Frame_Del 20 17928176 CTG - 24 56 BRCA TCGA-A1-A0SD CSTL1 SNP Silent 20 23420938 C T 28 56 BRCA TCGA-A1-A0SD FAM182B SNP Missense_Mutation 20 25755889 A T 7 50 BRCA TCGA-A1-A0SD L1CAM SNP Missense_Mutation 23 153132281 C T 19 96 BRCA TCGA-A1-A0SD CXorf58 SNP Missense_Mutation 23 23956735 G A 40 58 BRCA TCGA-A1-A0SD CASK SNP Missense_Mutation 23 41379771 T C 49 88 BRCA TCGA-A1-A0SD CPEB2 SNP Missense_Mutation 4 15067943 A G 8 94 BRCA TCGA-A1-A0SD LRBA SNP Splice_site 4 151821369 C A 18 87 BRCA TCGA-A1-A0SD PCDHA6 SNP Missense_Mutation 5 140209165 C T 27 55 BRCA TCGA-A1-A0SD PGC SNP Missense_Mutation 6 41712443 G A 39 54 BRCA TCGA-A1-A0SD CDHR3 SNP Missense_Mutation 7 105636709 G A 40 65 BRCA TCGA-A1-A0SD COL14A1 SNP Missense_Mutation 8 121344960 G A 38 66 BRCA TCGA-A1-A0SD RP1 DEL In_Frame_Del 8 55542731 TTTGAAATGCTTGGTCAA - 56 59 BRCA TCGA-A1-A0SD CNTFR SNP Missense_Mutation 9 34564705 C T 23 87 BRCA TCGA-A1-A0SE KLHL20 SNP Silent 1 173725095 A G 16 33 BRCA TCGA-A1-A0SE DCDC2B SNP Silent 1 32678163 C T 31 43 BRCA TCGA-A1-A0SE SYDE2 SNP Missense_Mutation 1 85656315 T C 52 65 BRCA TCGA-A1-A0SE TBC1D12 SNP Missense_Mutation 10 96291053 A T 10 88 BRCA TCGA-A1-A0SE B3GNT1 SNP Missense_Mutation 11 66114207 C A 29 56 BRCA TCGA-A1-A0SE RBM26 INS Frame_Shift_Ins 13 79945989 - A 57 86 BRCA TCGA-A1-A0SE MGA SNP Missense_Mutation 15 42054350 A G 9 82 BRCA TCGA-A1-A0SE UNC13C DEL In_Frame_Del 15 54306424 AAG - 5 66 BRCA TCGA-A1-A0SE ARRDC4 SNP Missense_Mutation 15 98513237 T C 51 91 BRCA TCGA-A1-A0SE CDH1 SNP Missense_Mutation 16 68844139 G A 45 94 BRCA TCGA-A1-A0SE ZNF737 SNP Missense_Mutation 19 20735296 C T 18 42 BRCA TCGA-A1-A0SE ZNF541 SNP Missense_Mutation 19 48044180 G A 39 68 BRCA TCGA-A1-A0SE MUC16 SNP Missense_Mutation 19 9087224 C T 30 49 BRCA TCGA-A1-A0SE APLF SNP Silent 2 68765324 G A 33 58 BRCA TCGA-A1-A0SE FHL1 SNP Missense_Mutation 23 135290662 G A 37 79 BRCA TCGA-A1-A0SE TBL1X SNP Silent 23 9659623 T C 50 52 BRCA TCGA-A1-A0SE LRRIQ4 SNP Nonsense_Mutation 3 169550926 G A 41 84 BRCA TCGA-A1-A0SE IMPDH2 SNP Silent 3 49066745 C T 25 51 BRCA TCGA-A1-A0SE LRIG1 SNP Silent 3 66463429 A G 12 57 BRCA TCGA-A1-A0SE C3orf38 SNP Missense_Mutation 3 88205481 A T 8 76 BRCA TCGA-A1-A0SE MED23 SNP Nonsense_Mutation 6 131948806 C A 30 88 BRCA TCGA-A1-A0SE MRPS18B SNP Missense_Mutation 6 30587563 C T 27 50 BRCA TCGA-A1-A0SE WDR91 SNP Missense_Mutation 7 134890705 T C 51 89 BRCA TCGA-A1-A0SE WDR86 SNP Silent 7 151093204 C T 32 59 BRCA TCGA-A1-A0SE TXNDC3 SNP Silent 7 37936496 G T 45 58 BRCA TCGA-A1-A0SE TXNDC3 SNP Missense_Mutation 7 37936498 C T 18 53 BRCA TCGA-A1-A0SE SDR16C5 SNP Missense_Mutation 8 57228816 G A 36 47 BRCA TCGA-A1-A0SE ZFHX4 SNP Missense_Mutation 8 77620129 G T 43 100 BRCA TCGA-A1-A0SE FAM102A DNP Missense_Mutation 9 130712790 TC AA 54 76 BRCA TCGA-A1-A0SE PTCH1 SNP Silent 9 98220334 G A 38 47 BRCA TCGA-A1-A0SF KDM5B SNP Missense_Mutation 1 202743781 T C 51 78 BRCA TCGA-A1-A0SF TP73 SNP Missense_Mutation 1 3599659 C T 29 81 BRCA TCGA-A1-A0SF PHF13 SNP Missense_Mutation 1 6676836 A C 3 62 BRCA TCGA-A1-A0SF MUC5B SNP Missense_Mutation 11 1266400 C A 30 57 BRCA TCGA-A1-A0SF MUC5B SNP Silent 11 1270767 T C 59 22 BRCA TCGA-A1-A0SF EXT2 SNP Missense_Mutation 11 44129420 C T 29 100 BRCA TCGA-A1-A0SF PPFIBP2 SNP Missense_Mutation 11 7672087 C T 29 72 BRCA TCGA-A1-A0SF KRT86 SNP Missense_Mutation 12 52700027 G A 38 83 BRCA TCGA-A1-A0SF ACRBP SNP Missense_Mutation 12 6753643 C T 30 60 BRCA TCGA-A1-A0SF BEST3 SNP Nonsense_Mutation 12 70072563 C A 29 98 BRCA TCGA-A1-A0SF KITLG SNP Missense_Mutation 12 88939633 G A 33 54 BRCA TCGA-A1-A0SF SKOR1 SNP Missense_Mutation 15 68118729 C T 27 95 BRCA TCGA-A1-A0SF SPPL2C SNP Silent 17 43922887 C T 23 34 BRCA TCGA-A1-A0SF ZNF91 SNP Missense_Mutation 19 23543097 G A 45 47 BRCA TCGA-A1-A0SF MUC16 SNP Missense_Mutation 19 9072222 C A 26 50 BRCA TCGA-A1-A0SF ARL6IP6 SNP Silent 2 153591548 C T 32 53 BRCA TCGA-A1-A0SF FIGN SNP Missense_Mutation 2 164468287 C A 25 77 BRCA TCGA-A1-A0SF CECR2 SNP Missense_Mutation 22 18018340 G A 44 70 BRCA TCGA-A1-A0SF DDX53 SNP Missense_Mutation 23 23018658 G A 41 39 BRCA TCGA-A1-A0SF H2AFZ SNP Missense_Mutation 4 100870052 G A 38 94 BRCA TCGA-A1-A0SF HMGB2 SNP Missense_Mutation 4 174254704 C T 30 100 BRCA TCGA-A1-A0SF PROP1 SNP Missense_Mutation 5 177420032 C T 27 80 BRCA TCGA-A1-A0SF KIF2A SNP Missense_Mutation 5 61643897 C T 29 97 BRCA TCGA-A1-A0SF UBE2QL1 SNP Missense_Mutation 5 6491344 G A 33 97 BRCA TCGA-A1-A0SF KPNA5 SNP Missense_Mutation 6 117013507 G A 45 80 BRCA TCGA-A1-A0SF LAMA2 SNP Silent 6 129722392 C T 27 52 BRCA TCGA-A1-A0SF CUL7 SNP Missense_Mutation 6 43018789 G A 38 85 BRCA TCGA-A1-A0SF MTO1 SNP Splice_Site 6 74176211 G A 33 96 BRCA TCGA-A1-A0SF ST7 SNP Silent 7 116593630 C T 29 55 BRCA TCGA-A1-A0SF PLXNA4 SNP Missense_Mutation 7 131831430 C T 31 100 BRCA TCGA-A1-A0SF MLL3 SNP Missense_Mutation 7 151879568 G A 33 70 BRCA TCGA-A1-A0SF EPPK1 SNP Silent 8 144940615 G A 39 34 BRCA TCGA-A1-A0SF PTPRD SNP Silent 9 8471022 C T 32 58 BRCA TCGA-A1-A0SG PADI2 SNP Missense_Mutation 1 17419026 G C 33 69 BRCA TCGA-A1-A0SG CSMD2 SNP Silent 1 34090712 G A 37 35 BRCA TCGA-A1-A0SG FRMD4A SNP Missense_Mutation 10 13852832 A G 16 91 BRCA TCGA-A1-A0SG TYSND1 SNP Missense_Mutation 10 71905831 G A 37 60 BRCA TCGA-A1-A0SG SYNPO2L SNP Silent 10 75406545 C T 26 59 BRCA TCGA-A1-A0SG LMO3 SNP Missense_Mutation 12 16713405 G C 38 61 BRCA TCGA-A1-A0SG NAV3 SNP Missense_Mutation 12 78569098 G A 33 100 BRCA TCGA-A1-A0SG CEP290 SNP Missense_Mutation 12 88472999 C T 20 96 BRCA TCGA-A1-A0SG MRPL46 SNP Nonsense_Mutation 15 89008087 G A 39 52 BRCA TCGA-A1-A0SG CHP2 SNP Missense_Mutation 16 23768630 G A 40 42 BRCA TCGA-A1-A0SG TMEM99 SNP Missense_Mutation 17 38991201 G A 36 60 BRCA TCGA-A1-A0SG MIS12 SNP Missense_Mutation 17 5392578 A T 16 42 BRCA TCGA-A1-A0SG ERN1 SNP Silent 17 62130251 G A 33 61 BRCA TCGA-A1-A0SG WDR88 SNP Silent 19 33639782 C T 19 47 BRCA TCGA-A1-A0SG SCN7A SNP Missense_Mutation 2 167263066 C T 19 67 BRCA TCGA-A1-A0SG C2orf73 SNP Silent 2 54587645 T C 51 49 BRCA TCGA-A1-A0SG BPIFB3 SNP Missense_Mutation 20 31656715 C A 26 56 BRCA TCGA-A1-A0SG ZNF217 SNP Missense_Mutation 20 52192368 C A 31 66 BRCA TCGA-A1-A0SG DSCAM SNP Missense_Mutation 21 41719645 G A 38 63 BRCA TCGA-A1-A0SG CECR2 SNP Missense_Mutation 22 18028506 C T 31 67 BRCA TCGA-A1-A0SG EWSR1 SNP Missense_Mutation 22 29694792 G C 42 95 BRCA TCGA-A1-A0SG MED12 SNP Missense_Mutation 23 70361800 A G 5 82 BRCA TCGA-A1-A0SG GRM7 SNP Missense_Mutation 3 7620374 C T 24 100 BRCA TCGA-A1-A0SG PPID SNP Splice_site 4 159640438 A C 2 89 BRCA TCGA-A1-A0SG HSD17B4 SNP Silent 5 118835164 C T 21 50 BRCA TCGA-A1-A0SG FAT2 SNP Missense_Mutation 5 150922760 A T 10 92 BRCA TCGA-A1-A0SG MAP3K1 INS Frame_Shift_Ins 5 56178135 - A 17 61 BRCA TCGA-A1-A0SG ARC SNP Missense_Mutation 8 143695260 G A 38 49 BRCA TCGA-A1-A0SG ADAMTSL1 SNP Missense_Mutation 9 18684728 G A 37 99 BRCA TCGA-A1-A0SH KCNT2 SNP Missense_Mutation 1 196285071 C A 32 100 BRCA TCGA-A1-A0SH NUAK2 SNP Splice_site 1 205272579 C T 29 67 BRCA TCGA-A1-A0SH CDK18 SNP Silent 1 205494302 G C 45 51 BRCA TCGA-A1-A0SH USH2A SNP Silent 1 216420207 G A 33 61 BRCA TCGA-A1-A0SH RYR2 SNP Missense_Mutation 1 237868586 C G 32 57 BRCA TCGA-A1-A0SH AHCTF1 SNP Nonsense_Mutation 1 247040513 C A 30 97 BRCA TCGA-A1-A0SH ATPIF1 DEL Frame_Shift_Del 1 28562879 ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG - 4 50 BRCA TCGA-A1-A0SH TTC39A SNP Missense_Mutation 1 51754571 G C 42 84 BRCA TCGA-A1-A0SH FAM171A1 SNP Silent 10 15255676 G A 43 46 BRCA TCGA-A1-A0SH CUBN SNP Missense_Mutation 10 16979594 G A 41 38 BRCA TCGA-A1-A0SH DRGX SNP Missense_Mutation 10 50599285 G C 36 67 BRCA TCGA-A1-A0SH ANK3 SNP Missense_Mutation 10 61965629 T C 51 91 BRCA TCGA-A1-A0SH FAM149B1 SNP Missense_Mutation 10 74994996 G A 45 83 BRCA TCGA-A1-A0SH CHCHD1 SNP Missense_Mutation 10 75541933 G T 39 85 BRCA TCGA-A1-A0SH ITIH5 SNP Missense_Mutation 10 7605129 C T 29 100 BRCA TCGA-A1-A0SH PLCE1 DEL Frame_Shift_Del 10 96022290 TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG - 52 90 BRCA TCGA-A1-A0SH EXPH5 SNP Missense_Mutation 11 108383322 C T 32 43 BRCA TCGA-A1-A0SH METTL15 SNP Missense_Mutation 11 28135038 C G 29 54 BRCA TCGA-A1-A0SH SLC43A1 SNP Silent 11 57263602 G A 45 82 BRCA TCGA-A1-A0SH FAM111A SNP Missense_Mutation 11 58920660 G A 33 49 BRCA TCGA-A1-A0SH THRSP SNP Silent 11 77774954 C G 21 53 BRCA TCGA-A1-A0SH HCFC2 SNP Missense_Mutation 12 104460047 G A 41 96 BRCA TCGA-A1-A0SH TAS2R46 DEL Frame_Shift_Del 12 11214632 A - 7 55 BRCA TCGA-A1-A0SH MED13L SNP Missense_Mutation 12 116408458 G A 45 98 BRCA TCGA-A1-A0SH BLOC1S1 SNP Missense_Mutation 12 56113352 G C 41 96 BRCA TCGA-A1-A0SH PZP SNP Missense_Mutation 12 9317862 G T 33 93 BRCA TCGA-A1-A0SH RPS2P4 SNP Silent 14 105302400 G A 44 57 BRCA TCGA-A1-A0SH IPO4 SNP Silent 14 24652347 C G 25 46 BRCA TCGA-A1-A0SH C14orf37 SNP Missense_Mutation 14 58605932 T C 61 56 BRCA TCGA-A1-A0SH DAPK2 SNP Missense_Mutation 15 64204356 A T 6 57 BRCA TCGA-A1-A0SH SCAPER SNP Missense_Mutation 15 77057342 C T 27 100 BRCA TCGA-A1-A0SH LOC440292 SNP Missense_Mutation 15 78234749 A T 7 66 BRCA TCGA-A1-A0SH ALPK3 SNP Missense_Mutation 15 85400295 G A 45 57 BRCA TCGA-A1-A0SH KLHL25 SNP Missense_Mutation 15 86311940 A T 8 89 BRCA TCGA-A1-A0SH RHCG SNP Nonsense_Mutation 15 90016021 G T 45 50 BRCA TCGA-A1-A0SH RGMA SNP Silent 15 93616248 C T 21 78 BRCA TCGA-A1-A0SH APOBR SNP Missense_Mutation 16 28506628 G T 33 55 BRCA TCGA-A1-A0SH EDC4 SNP Silent 16 67914876 C T 25 52 BRCA TCGA-A1-A0SH HYDIN SNP Nonsense_Mutation 16 70989287 C A 32 83 BRCA TCGA-A1-A0SH DHRS13 SNP Missense_Mutation 17 27225602 C G 32 49 BRCA TCGA-A1-A0SH GPR179 SNP Silent 17 36486443 C T 28 65 BRCA TCGA-A1-A0SH KRT28 SNP Missense_Mutation 17 38955885 C A 24 67 BRCA TCGA-A1-A0SH BRCA1 SNP Nonsense_Mutation 17 41244748 G A 45 56 BRCA TCGA-A1-A0SH DHX33 SNP Silent 17 5356907 T C 51 31 BRCA TCGA-A1-A0SH EVPL SNP Silent 17 74005590 C T 32 54 BRCA TCGA-A1-A0SH TMC8 SNP Silent 17 76134257 C T 32 62 BRCA TCGA-A1-A0SH ESCO1 SNP Nonsense_Mutation 18 19154369 G A 45 63 BRCA TCGA-A1-A0SH WDR7 SNP Missense_Mutation 18 54424074 C G 29 64 BRCA TCGA-A1-A0SH ARHGAP28 SNP Missense_Mutation 18 6837365 G C 34 61 BRCA TCGA-A1-A0SH CD97 SNP Missense_Mutation 19 14507159 G C 41 59 BRCA TCGA-A1-A0SH WDR87 SNP Missense_Mutation 19 38379723 G T 45 44 BRCA TCGA-A1-A0SH GPR4 SNP Silent 19 46094651 G C 33 82 BRCA TCGA-A1-A0SH GPR32 SNP Missense_Mutation 19 51274646 C A 27 50 BRCA TCGA-A1-A0SH ZNF606 SNP Missense_Mutation 19 58489941 T C 57 87 BRCA TCGA-A1-A0SH MARCH7 SNP Missense_Mutation 2 160585678 G C 45 83 BRCA TCGA-A1-A0SH RPE SNP Silent 2 210882585 C T 29 53 BRCA TCGA-A1-A0SH SLC19A3 SNP Silent 2 228563717 G C 45 36 BRCA TCGA-A1-A0SH FAM150B SNP Missense_Mutation 2 286186 G C 41 78 BRCA TCGA-A1-A0SH SPTBN1 SNP Missense_Mutation 2 54874337 G A 33 100 BRCA TCGA-A1-A0SH PREX1 SNP Silent 20 47258785 G C 45 69 BRCA TCGA-A1-A0SH CCT8 SNP Missense_Mutation 21 30439299 C T 29 85 BRCA TCGA-A1-A0SH KDELR3 SNP Missense_Mutation 22 38875700 C G 32 48 BRCA TCGA-A1-A0SH PPARA DEL In_Frame_Del 22 46631235 GCT - 38 39 BRCA TCGA-A1-A0SH H2BFWT SNP Nonsense_Mutation 23 103267770 C A 31 60 BRCA TCGA-A1-A0SH IRS4 SNP Missense_Mutation 23 107978508 G C 41 93 BRCA TCGA-A1-A0SH ACSL4 SNP Missense_Mutation 23 108911440 C T 22 84 BRCA TCGA-A1-A0SH MTM1 SNP Missense_Mutation 23 149828220 G C 48 74 BRCA TCGA-A1-A0SH MAGEA12 SNP Missense_Mutation 23 151900419 C T 30 55 BRCA TCGA-A1-A0SH PNCK SNP Missense_Mutation 23 152936894 C G 29 51 BRCA TCGA-A1-A0SH DMD SNP Missense_Mutation 23 31792151 C T 29 86 BRCA TCGA-A1-A0SH UPRT SNP Missense_Mutation 23 74519698 C T 23 55 BRCA TCGA-A1-A0SH DACH2 SNP Silent 23 85403921 C G 29 49 BRCA TCGA-A1-A0SH GOLGB1 SNP Silent 3 121415260 G T 41 51 BRCA TCGA-A1-A0SH LPP SNP Missense_Mutation 3 188327441 G C 47 95 BRCA TCGA-A1-A0SH CNTN4 SNP Missense_Mutation 3 3078931 G C 45 100 BRCA TCGA-A1-A0SH COL7A1 SNP Silent 3 48612826 G A 39 50 BRCA TCGA-A1-A0SH IL17RD SNP Silent 3 57131808 G A 39 39 BRCA TCGA-A1-A0SH PHF17 SNP Missense_Mutation 4 129792615 C G 32 82 BRCA TCGA-A1-A0SH PALLD SNP Missense_Mutation 4 169589516 G C 45 100 BRCA TCGA-A1-A0SH GDF9 SNP Missense_Mutation 5 132197631 G C 33 64 BRCA TCGA-A1-A0SH TIFAB SNP Missense_Mutation 5 134785234 G T 42 59 BRCA TCGA-A1-A0SH FBXO4 SNP Nonsense_Mutation 5 41934239 G T 41 97 BRCA TCGA-A1-A0SH BDP1 SNP Missense_Mutation 5 70858273 G C 33 66 BRCA TCGA-A1-A0SH MICAL1 SNP Missense_Mutation 6 109770913 C G 30 79 BRCA TCGA-A1-A0SH CAP2 SNP Missense_Mutation 6 17551770 G C 33 77 BRCA TCGA-A1-A0SH SLC17A4 SNP Splice_Site 6 25776822 G C 33 86 BRCA TCGA-A1-A0SH MUC21 SNP Missense_Mutation 6 30954351 C A 25 60 BRCA TCGA-A1-A0SH DNAH8 SNP Missense_Mutation 6 38830152 G T 47 100 BRCA TCGA-A1-A0SH FAM83B SNP Missense_Mutation 6 54791317 C T 29 76 BRCA TCGA-A1-A0SH MUC12 SNP Missense_Mutation 7 100646022 C A 17 61 BRCA TCGA-A1-A0SH ANKRD7 SNP Missense_Mutation 7 117865025 C G 29 53 BRCA TCGA-A1-A0SH NOS3 SNP Missense_Mutation 7 150706129 G C 37 59 BRCA TCGA-A1-A0SH ASL SNP Missense_Mutation 7 65546799 C T 28 80 BRCA TCGA-A1-A0SH BCL7B SNP Missense_Mutation 7 72957910 G A 45 72 BRCA TCGA-A1-A0SH COL14A1 SNP Missense_Mutation 8 121209170 G C 33 71 BRCA TCGA-A1-A0SH CDCA2 SNP Missense_Mutation 8 25364913 C T 30 67 BRCA TCGA-A1-A0SH CSMD1 SNP Nonsense_Mutation 8 2967831 G A 45 63 BRCA TCGA-A1-A0SH KCNU1 SNP Missense_Mutation 8 36663872 C T 32 82 BRCA TCGA-A1-A0SH CYP7A1 SNP Silent 8 59405044 G C 45 53 BRCA TCGA-A1-A0SH ZFHX4 SNP Missense_Mutation 8 77616522 G A 45 86 BRCA TCGA-A1-A0SH SLC7A13 SNP Silent 8 87242366 T G 54 48 BRCA TCGA-A1-A0SH LRRC8A SNP Missense_Mutation 9 131671269 C G 30 98 BRCA TCGA-A1-A0SH TEK SNP Silent 9 27169623 C T 30 52 BRCA TCGA-A1-A0SI CLCC1 SNP Missense_Mutation 1 109479811 C G 32 58 BRCA TCGA-A1-A0SI HIST2H2BE SNP Silent 1 149857969 G A 37 66 BRCA TCGA-A1-A0SI TCHH SNP Missense_Mutation 1 152081408 C T 29 58 BRCA TCGA-A1-A0SI DAP3 SNP Missense_Mutation 1 155686914 G A 45 62 BRCA TCGA-A1-A0SI POU2F1 SNP Splice_site 1 167301713 G C 33 71 BRCA TCGA-A1-A0SI PAPPA2 SNP Missense_Mutation 1 176664966 C T 29 100 BRCA TCGA-A1-A0SI CEP350 SNP Missense_Mutation 1 180003060 G C 33 54 BRCA TCGA-A1-A0SI RGS8 SNP Missense_Mutation 1 182617366 C G 17 100 BRCA TCGA-A1-A0SI PTPRC SNP Silent 1 198676020 T G 64 49 BRCA TCGA-A1-A0SI KIF21B SNP Missense_Mutation 1 200974018 G C 37 72 BRCA TCGA-A1-A0SI CACNA1S SNP Missense_Mutation 1 201063115 G C 37 96 BRCA TCGA-A1-A0SI ITPKB SNP Missense_Mutation 1 226924709 C G 29 88 BRCA TCGA-A1-A0SI ADCK3 SNP Missense_Mutation 1 227170601 C G 32 66 BRCA TCGA-A1-A0SI ZNF436 SNP Missense_Mutation 1 23688993 G C 45 56 BRCA TCGA-A1-A0SI ZNF436 SNP Missense_Mutation 1 23689523 G A 41 68 BRCA TCGA-A1-A0SI ZBTB8OS SNP Silent 1 33099308 G A 33 70 BRCA TCGA-A1-A0SI CSMD2 SNP Silent 1 34209071 G A 40 42 BRCA TCGA-A1-A0SI CYP4A11 SNP Missense_Mutation 1 47400819 G C 45 48 BRCA TCGA-A1-A0SI PER3 SNP Missense_Mutation 1 7886690 G A 37 58 BRCA TCGA-A1-A0SI SNX7 SNP Silent 1 99167432 G A 45 52 BRCA TCGA-A1-A0SI ELOVL3 SNP Missense_Mutation 10 103987420 C G 32 56 BRCA TCGA-A1-A0SI C10orf118 SNP Missense_Mutation 10 115910964 C G 32 95 BRCA TCGA-A1-A0SI FAM24A SNP Silent 10 124671228 C G 30 51 BRCA TCGA-A1-A0SI IKZF5 SNP Missense_Mutation 10 124753897 G C 47 99 BRCA TCGA-A1-A0SI FAM171A1 SNP Missense_Mutation 10 15255759 C T 29 86 BRCA TCGA-A1-A0SI AKR1C1 SNP Missense_Mutation 10 5011086 G C 41 81 BRCA TCGA-A1-A0SI CDH23 SNP Silent 10 73563078 C G 32 62 BRCA TCGA-A1-A0SI KAT6B SNP Missense_Mutation 10 76790587 T A 51 89 BRCA TCGA-A1-A0SI NCAM1 SNP Silent 11 113076802 C T 30 79 BRCA TCGA-A1-A0SI SIDT2 SNP Missense_Mutation 11 117062717 C T 32 96 BRCA TCGA-A1-A0SI C1QTNF5 SNP Missense_Mutation 11 119215369 C T 29 96 BRCA TCGA-A1-A0SI CRTAM SNP Missense_Mutation 11 122709265 G C 33 57 BRCA TCGA-A1-A0SI QSER1 SNP Missense_Mutation 11 32956104 G T 34 50 BRCA TCGA-A1-A0SI KIAA1549L SNP Missense_Mutation 11 33564822 G C 33 48 BRCA TCGA-A1-A0SI OR1S1 SNP Silent 11 57982600 G A 47 53 BRCA TCGA-A1-A0SI AHNAK SNP Silent 11 62285191 G A 45 57 BRCA TCGA-A1-A0SI NXF1 SNP Missense_Mutation 11 62564681 C G 32 68 BRCA TCGA-A1-A0SI PDE2A SNP Splice_Site 11 72295773 C T 32 89 BRCA TCGA-A1-A0SI SYT9 SNP Missense_Mutation 11 7324494 G T 45 94 BRCA TCGA-A1-A0SI C11orf30 SNP Missense_Mutation 11 76257017 G C 45 95 BRCA TCGA-A1-A0SI C11orf82 SNP Nonsense_Mutation 11 82643268 G A 41 52 BRCA TCGA-A1-A0SI SBF2 SNP Silent 11 9834112 C T 29 48 BRCA TCGA-A1-A0SI HSP90B1 SNP Splice_Site 12 104337515 G C 33 98 BRCA TCGA-A1-A0SI VSIG10 SNP Silent 12 118511688 C T 29 52 BRCA TCGA-A1-A0SI KIF21A SNP Missense_Mutation 12 39716479 A G 16 64 BRCA TCGA-A1-A0SI KRT84 SNP Missense_Mutation 12 52775231 C G 29 76 BRCA TCGA-A1-A0SI ANO2 SNP Missense_Mutation 12 5848485 C G 32 83 BRCA TCGA-A1-A0SI XPOT SNP Silent 12 64825441 C G 29 68 BRCA TCGA-A1-A0SI GRIP1 SNP Missense_Mutation 12 66800072 C G 32 87 BRCA TCGA-A1-A0SI ERCC5 SNP Silent 13 103510687 C T 22 39 BRCA TCGA-A1-A0SI ATP8A2 SNP Splice_Site 13 26155956 G C 33 100 BRCA TCGA-A1-A0SI RB1 SNP Missense_Mutation 13 48941691 G A 33 84 BRCA TCGA-A1-A0SI RB1 SNP Nonsense_Mutation 13 49039501 C G 29 91 BRCA TCGA-A1-A0SI TMX1 SNP Silent 14 51707049 C G 30 32 BRCA TCGA-A1-A0SI SIX4 SNP Missense_Mutation 14 61186663 C G 32 61 BRCA TCGA-A1-A0SI CHURC1-FNTB SNP Nonsense_Mutation 14 65392796 C T 29 92 BRCA TCGA-A1-A0SI PLEKHH1 SNP Missense_Mutation 14 68029300 C A 30 59 BRCA TCGA-A1-A0SI SLC8A3 SNP Silent 14 70633483 G A 33 78 BRCA TCGA-A1-A0SI YLPM1 SNP Missense_Mutation 14 75285000 G T 33 97 BRCA TCGA-A1-A0SI DLST SNP Missense_Mutation 14 75355833 G A 33 78 BRCA TCGA-A1-A0SI DLST SNP Missense_Mutation 14 75356620 G A 33 100 BRCA TCGA-A1-A0SI NIPA1 SNP Missense_Mutation 15 23052645 G A 33 97 BRCA TCGA-A1-A0SI HERC2 SNP Silent 15 28408363 C T 29 51 BRCA TCGA-A1-A0SI HERC2 SNP Nonsense_Mutation 15 28474383 G A 37 64 BRCA TCGA-A1-A0SI CCNDBP1 SNP Missense_Mutation 15 43486649 G A 45 76 BRCA TCGA-A1-A0SI CCPG1 SNP Missense_Mutation 15 55669182 G C 33 63 BRCA TCGA-A1-A0SI ACAN SNP Missense_Mutation 15 89400566 G C 45 61 BRCA TCGA-A1-A0SI CDH16 SNP Missense_Mutation 16 66947420 C G 32 65 BRCA TCGA-A1-A0SI ESRP2 SNP Missense_Mutation 16 68265592 C G 29 62 BRCA TCGA-A1-A0SI ZFHX3 SNP Silent 16 72831445 C T 30 68 BRCA TCGA-A1-A0SI ABAT SNP Silent 16 8857982 G A 33 49 BRCA TCGA-A1-A0SI SLFN13 SNP Nonsense_Mutation 17 33768152 G C 45 48 BRCA TCGA-A1-A0SI TUBG2 SNP Silent 17 40817562 C T 32 60 BRCA TCGA-A1-A0SI PLEKHH3 SNP Splice_Site 17 40826429 T C 55 58 BRCA TCGA-A1-A0SI BRCA1 SNP Missense_Mutation 17 41276089 C G 29 53 BRCA TCGA-A1-A0SI C17orf104 SNP Silent 17 42739711 G A 33 74 BRCA TCGA-A1-A0SI NFE2L1 SNP Missense_Mutation 17 46136365 C G 29 99 BRCA TCGA-A1-A0SI ABCA8 SNP Missense_Mutation 17 66902212 C G 32 87 BRCA TCGA-A1-A0SI TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-A1-A0SI CANT1 SNP Missense_Mutation 17 76991123 G A 34 64 BRCA TCGA-A1-A0SI FASN SNP Silent 17 80049393 G A 40 40 BRCA TCGA-A1-A0SI PPAN-P2RY11 SNP Missense_Mutation 19 10217225 G C 37 93 BRCA TCGA-A1-A0SI MAN2B1 SNP Nonsense_Mutation 19 12760743 C A 30 80 BRCA TCGA-A1-A0SI FAM129C SNP Missense_Mutation 19 17654376 G A 37 49 BRCA TCGA-A1-A0SI UNC13A SNP Silent 19 17722612 G A 45 61 BRCA TCGA-A1-A0SI S1PR4 SNP Silent 19 3179900 G A 41 68 BRCA TCGA-A1-A0SI APLP1 SNP Missense_Mutation 19 36362821 G A 33 83 BRCA TCGA-A1-A0SI ZNF345 SNP Missense_Mutation 19 37368402 C T 29 91 BRCA TCGA-A1-A0SI AKT2 SNP Silent 19 40742257 G C 45 57 BRCA TCGA-A1-A0SI ZNF227 SNP Silent 19 44740536 G A 33 59 BRCA TCGA-A1-A0SI KLK8 SNP Missense_Mutation 19 51499359 G A 39 59 BRCA TCGA-A1-A0SI SIGLEC6 SNP Missense_Mutation 19 52034562 G C 41 53 BRCA TCGA-A1-A0SI ZNF701 SNP Missense_Mutation 19 53079190 G A 41 69 BRCA TCGA-A1-A0SI ZNF419 SNP Missense_Mutation 19 58005018 C G 29 86 BRCA TCGA-A1-A0SI ZNF154 SNP Silent 19 58213789 G A 45 51 BRCA TCGA-A1-A0SI RGPD4 SNP Missense_Mutation 2 108455374 G C 33 53 BRCA TCGA-A1-A0SI DPP10 SNP Splice_Site 2 116101489 G C 44 79 BRCA TCGA-A1-A0SI SMPD4 SNP Silent 2 130910973 C T 24 55 BRCA TCGA-A1-A0SI SCN3A SNP Missense_Mutation 2 165947193 G C 33 100 BRCA TCGA-A1-A0SI DNAH7 SNP Silent 2 196737067 G T 41 50 BRCA TCGA-A1-A0SI OBSL1 SNP Missense_Mutation 2 220430106 C A 24 58 BRCA TCGA-A1-A0SI EPHA4 SNP Missense_Mutation 2 222301283 G A 37 72 BRCA TCGA-A1-A0SI SCG2 SNP Missense_Mutation 2 224462236 G C 33 52 BRCA TCGA-A1-A0SI CLEC4F SNP Missense_Mutation 2 71043268 C A 32 71 BRCA TCGA-A1-A0SI CD207 SNP Missense_Mutation 2 71060130 G C 33 51 BRCA TCGA-A1-A0SI TACR1 SNP Missense_Mutation 2 75425872 C T 29 97 BRCA TCGA-A1-A0SI KIDINS220 SNP Missense_Mutation 2 8933973 G T 45 99 BRCA TCGA-A1-A0SI FAHD2B SNP Nonsense_Mutation 2 97757395 G A 45 61 BRCA TCGA-A1-A0SI PLCG1 SNP Silent 20 39791131 C T 29 60 BRCA TCGA-A1-A0SI PTPRT SNP Missense_Mutation 20 40790028 C G 32 74 BRCA TCGA-A1-A0SI OCSTAMP SNP Silent 20 45170399 C T 23 30 BRCA TCGA-A1-A0SI DPM1 SNP Missense_Mutation 20 49552777 C G 32 62 BRCA TCGA-A1-A0SI NRIP1 SNP Missense_Mutation 21 16340055 G C 45 56 BRCA TCGA-A1-A0SI PIK3IP1 SNP Missense_Mutation 22 31679123 G A 43 50 BRCA TCGA-A1-A0SI TUBGCP6 SNP Missense_Mutation 22 50659412 G C 41 50 BRCA TCGA-A1-A0SI RBM41 SNP Nonsense_Mutation 23 106332067 C A 29 76 BRCA TCGA-A1-A0SI GUCY2F SNP Silent 23 108684643 G C 33 41 BRCA TCGA-A1-A0SI GRIA3 SNP Missense_Mutation 23 122528948 G A 41 93 BRCA TCGA-A1-A0SI PLXNA3 SNP Missense_Mutation 23 153698349 G C 45 95 BRCA TCGA-A1-A0SI PTCHD1 DNP Missense_Mutation 23 23397742 GG AT 35 77 BRCA TCGA-A1-A0SI DMD SNP Missense_Mutation 23 32717249 G C 45 69 BRCA TCGA-A1-A0SI KDM6A SNP Silent 23 44921975 C G 32 62 BRCA TCGA-A1-A0SI ZNF673 SNP Missense_Mutation 23 46322225 G C 41 69 BRCA TCGA-A1-A0SI FAM120C SNP Missense_Mutation 23 54160448 C G 29 57 BRCA TCGA-A1-A0SI WNK3 SNP Missense_Mutation 23 54263720 C T 29 62 BRCA TCGA-A1-A0SI TEX11 SNP Nonsense_Mutation 23 69772023 C A 32 84 BRCA TCGA-A1-A0SI STS SNP Silent 23 7252144 G A 33 38 BRCA TCGA-A1-A0SI HHLA2 SNP Missense_Mutation 3 108076828 C G 32 44 BRCA TCGA-A1-A0SI DPPA4 SNP Missense_Mutation 3 109052730 G A 45 47 BRCA TCGA-A1-A0SI SIDT1 SNP Nonsense_Mutation 3 113323818 C T 29 100 BRCA TCGA-A1-A0SI ARHGAP31 SNP Missense_Mutation 3 119133900 G C 33 72 BRCA TCGA-A1-A0SI UMPS SNP Silent 3 124449396 C T 31 57 BRCA TCGA-A1-A0SI ACPP SNP Missense_Mutation 3 132036383 G T 37 30 BRCA TCGA-A1-A0SI XPC SNP Missense_Mutation 3 14197884 C T 31 66 BRCA TCGA-A1-A0SI CP SNP Silent 3 148896325 G A 33 75 BRCA TCGA-A1-A0SI IGSF10 SNP Silent 3 151163473 C T 29 54 BRCA TCGA-A1-A0SI PIK3CA SNP Missense_Mutation 3 178938934 G A 45 98 BRCA TCGA-A1-A0SI PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A1-A0SI CCDC39 SNP Silent 3 180379751 A G 4 58 BRCA TCGA-A1-A0SI HTR3C SNP Silent 3 183777385 C G 29 52 BRCA TCGA-A1-A0SI PYDC2 SNP Silent 3 191179038 G A 45 55 BRCA TCGA-A1-A0SI CCRL2 SNP Missense_Mutation 3 46449655 G A 45 46 BRCA TCGA-A1-A0SI DHX30 SNP Splice_Site 3 47859511 G T 33 78 BRCA TCGA-A1-A0SI RBM6 SNP Missense_Mutation 3 50036917 G C 33 96 BRCA TCGA-A1-A0SI RBM5 SNP Missense_Mutation 3 50151418 G C 45 50 BRCA TCGA-A1-A0SI GRM2 SNP Missense_Mutation 3 51746802 G A 37 66 BRCA TCGA-A1-A0SI DNAH1 SNP Silent 3 52383095 C G 29 54 BRCA TCGA-A1-A0SI STAB1 SNP Missense_Mutation 3 52550384 C G 26 49 BRCA TCGA-A1-A0SI GYPE SNP Missense_Mutation 4 144801602 G C 33 51 BRCA TCGA-A1-A0SI SNCAIP SNP Silent 5 121786699 G A 45 59 BRCA TCGA-A1-A0SI ODZ2 SNP Silent 5 167675132 G A 33 75 BRCA TCGA-A1-A0SI TRIM41 SNP Missense_Mutation 5 180651357 A G 8 65 BRCA TCGA-A1-A0SI RAI14 SNP Missense_Mutation 5 34824468 C G 32 65 BRCA TCGA-A1-A0SI GAPT SNP Missense_Mutation 5 57790418 C G 32 48 BRCA TCGA-A1-A0SI ZNF366 SNP Missense_Mutation 5 71756672 C T 31 67 BRCA TCGA-A1-A0SI MYB DEL In_Frame_Del 6 135511005 AAG - 1 93 BRCA TCGA-A1-A0SI SYNE1 SNP Missense_Mutation 6 152451876 G A 33 83 BRCA TCGA-A1-A0SI SLC39A7 SNP Missense_Mutation 6 33169176 G A 45 71 BRCA TCGA-A1-A0SI KIAA1009 SNP Missense_Mutation 6 84884604 C G 32 87 BRCA TCGA-A1-A0SI AGFG2 SNP Missense_Mutation 7 100146506 G A 45 98 BRCA TCGA-A1-A0SI ARMC10 SNP Silent 7 102732968 G A 45 59 BRCA TCGA-A1-A0SI RINT1 SNP Nonsense_Mutation 7 105205803 C T 19 50 BRCA TCGA-A1-A0SI MLL3 SNP Missense_Mutation 7 151960110 C G 30 98 BRCA TCGA-A1-A0SI ACTR3B SNP Missense_Mutation 7 152497655 C G 28 94 BRCA TCGA-A1-A0SI RNF32 SNP Silent 7 156450902 G A 45 60 BRCA TCGA-A1-A0SI URGCP SNP Missense_Mutation 7 43916676 G C 41 60 BRCA TCGA-A1-A0SI URGCP SNP Nonsense_Mutation 7 43916993 G C 45 54 BRCA TCGA-A1-A0SI BAZ1B SNP Missense_Mutation 7 72877401 G C 33 73 BRCA TCGA-A1-A0SI PTPN12 SNP Missense_Mutation 7 77240143 C G 32 93 BRCA TCGA-A1-A0SI CYP3A4 SNP Silent 7 99366074 C T 29 45 BRCA TCGA-A1-A0SI EXOSC4 SNP Missense_Mutation 8 145133638 G A 43 79 BRCA TCGA-A1-A0SI TEX15 SNP Missense_Mutation 8 30694361 G A 35 56 BRCA TCGA-A1-A0SI RUNX1T1 SNP Silent 8 93088269 G A 45 82 BRCA TCGA-A1-A0SI DPY19L4 SNP Missense_Mutation 8 95738635 C G 29 53 BRCA TCGA-A1-A0SI GTF3C5 SNP Silent 9 135917590 G A 33 50 BRCA TCGA-A1-A0SI TAF1L SNP Missense_Mutation 9 32632175 G C 45 74 BRCA TCGA-A1-A0SI CNTFR SNP Silent 9 34552694 G C 45 51 BRCA TCGA-A1-A0SI SPAG8 SNP Silent 9 35811635 G A 42 51 BRCA TCGA-A1-A0SI MLANA SNP Silent 9 5897575 C T 30 56 BRCA TCGA-A1-A0SI AUH SNP Missense_Mutation 9 94087618 C T 28 57 BRCA TCGA-A1-A0SI FAM22G SNP Missense_Mutation 9 99694157 C G 32 50 BRCA TCGA-A1-A0SJ ADORA3 SNP Missense_Mutation 1 112029214 C T 27 44 BRCA TCGA-A1-A0SJ SPEN DEL Frame_Shift_Del 1 16258909 CCCTGTT - 22 51 BRCA TCGA-A1-A0SJ CHML DEL Frame_Shift_Del 1 241798828 G - 47 47 BRCA TCGA-A1-A0SJ BCL9L SNP Missense_Mutation 11 118770024 G A 36 69 BRCA TCGA-A1-A0SJ RASSF7 SNP Missense_Mutation 11 562707 G C 33 53 BRCA TCGA-A1-A0SJ PPFIBP2 SNP Silent 11 7650734 G T 41 38 BRCA TCGA-A1-A0SJ ASCL3 SNP Missense_Mutation 11 8959533 G C 43 67 BRCA TCGA-A1-A0SJ GNPTAB SNP Missense_Mutation 12 102161847 G A 45 85 BRCA TCGA-A1-A0SJ GJB2 SNP Missense_Mutation 13 20763283 G C 37 45 BRCA TCGA-A1-A0SJ NFATC4 SNP Silent 14 24845882 G A 38 50 BRCA TCGA-A1-A0SJ UBAP1L SNP Missense_Mutation 15 65385553 C T 27 52 BRCA TCGA-A1-A0SJ CILP SNP Missense_Mutation 15 65489601 A T 9 91 BRCA TCGA-A1-A0SJ TNRC6A DEL Frame_Shift_Del 16 24807329 ATTT - 8 53 BRCA TCGA-A1-A0SJ ALG1 SNP Missense_Mutation 16 5132586 C T 25 94 BRCA TCGA-A1-A0SJ NLRC5 SNP Silent 16 57059665 C T 30 49 BRCA TCGA-A1-A0SJ HAGHL SNP Missense_Mutation 16 779103 T C 63 39 BRCA TCGA-A1-A0SJ PSMD11 SNP Missense_Mutation 17 30771560 G C 44 78 BRCA TCGA-A1-A0SJ SCN4A SNP Missense_Mutation 17 62022840 G C 33 51 BRCA TCGA-A1-A0SJ AMZ2 SNP Missense_Mutation 17 66246548 T G 56 77 BRCA TCGA-A1-A0SJ GRIN2C SNP Silent 17 72846850 G A 48 59 BRCA TCGA-A1-A0SJ NOTUM SNP Splice_site 17 79914949 C T 27 93 BRCA TCGA-A1-A0SJ NUP62 SNP Missense_Mutation 19 50412785 C A 25 45 BRCA TCGA-A1-A0SJ ZNF543 SNP Missense_Mutation 19 57839971 G A 33 44 BRCA TCGA-A1-A0SJ SNAI1 SNP Missense_Mutation 20 48604526 G A 39 71 BRCA TCGA-A1-A0SJ TH1L SNP Missense_Mutation 20 57566094 G C 33 78 BRCA TCGA-A1-A0SJ COL20A1 SNP Missense_Mutation 20 61939981 C T 19 94 BRCA TCGA-A1-A0SJ SIK1 SNP Silent 21 44839242 C T 27 9 BRCA TCGA-A1-A0SJ FRMPD3 SNP Silent 23 106846552 G A 39 46 BRCA TCGA-A1-A0SJ MCTS1 SNP Missense_Mutation 23 119738713 G A 42 56 BRCA TCGA-A1-A0SJ OFD1 SNP Nonsense_Mutation 23 13776561 C T 29 88 BRCA TCGA-A1-A0SJ ZBTB11 SNP Missense_Mutation 3 101378855 A C 9 61 BRCA TCGA-A1-A0SJ HNRPDL SNP Missense_Mutation 4 83350497 C G 28 49 BRCA TCGA-A1-A0SJ ODZ2 SNP Silent 5 167645417 C T 19 41 BRCA TCGA-A1-A0SJ FAF2 SNP Missense_Mutation 5 175875463 C A 25 83 BRCA TCGA-A1-A0SJ CNR1 SNP Missense_Mutation 6 88854518 A G 7 93 BRCA TCGA-A1-A0SJ IKZF1 SNP Missense_Mutation 7 50468114 G A 38 75 BRCA TCGA-A1-A0SJ LRRD1 SNP Nonsense_Mutation 7 91792659 C A 29 83 BRCA TCGA-A1-A0SJ RANBP6 SNP Missense_Mutation 9 6012961 T C 56 55 BRCA TCGA-A1-A0SK SEMA6C SNP Splice_site 1 151109550 C A 18 80 BRCA TCGA-A1-A0SK RXFP4 SNP Missense_Mutation 1 155912487 G T 45 34 BRCA TCGA-A1-A0SK RFWD2 SNP Silent 1 176012391 T G 54 64 BRCA TCGA-A1-A0SK SNP Silent 1 211381150 G A 35 66 BRCA TCGA-A1-A0SK USH2A SNP Missense_Mutation 1 215848217 G T 44 53 BRCA TCGA-A1-A0SK LIN9 SNP Silent 1 226426717 C T 24 53 BRCA TCGA-A1-A0SK DHDDS SNP Silent 1 26784300 G C 46 54 BRCA TCGA-A1-A0SK GMEB1 SNP Missense_Mutation 1 29016663 A T 9 67 BRCA TCGA-A1-A0SK DMBT1 SNP Missense_Mutation 10 124390771 G A 40 40 BRCA TCGA-A1-A0SK ACBD5 SNP Missense_Mutation 10 27520705 A C 8 91 BRCA TCGA-A1-A0SK MYPN SNP Silent 10 69881873 C T 19 43 BRCA TCGA-A1-A0SK ARHGAP42 SNP Missense_Mutation 11 100845328 C T 18 85 BRCA TCGA-A1-A0SK TECTA SNP Missense_Mutation 11 121008612 G C 48 53 BRCA TCGA-A1-A0SK AHNAK SNP Missense_Mutation 11 62297801 T C 64 77 BRCA TCGA-A1-A0SK ATG2A SNP Missense_Mutation 11 64673972 A C 7 88 BRCA TCGA-A1-A0SK GDPD5 SNP Missense_Mutation 11 75160132 C T 19 56 BRCA TCGA-A1-A0SK ANKRD42 SNP Missense_Mutation 11 82938872 A T 16 54 BRCA TCGA-A1-A0SK FAT3 SNP Missense_Mutation 11 92533189 T A 64 93 BRCA TCGA-A1-A0SK DTX1 SNP Missense_Mutation 12 113515277 C A 23 88 BRCA TCGA-A1-A0SK TROAP SNP Silent 12 49717675 T C 52 53 BRCA TCGA-A1-A0SK HNRNPA1 SNP Missense_Mutation 12 54678053 G A 39 76 BRCA TCGA-A1-A0SK NABP2 DEL Frame_Shift_Del 12 56619427 G - 35 92 BRCA TCGA-A1-A0SK ARL11 SNP Missense_Mutation 13 50204651 C T 27 97 BRCA TCGA-A1-A0SK OR5AU1 SNP Missense_Mutation 14 21623196 G C 48 64 BRCA TCGA-A1-A0SK CHRNB4 SNP Missense_Mutation 15 78921983 C T 19 52 BRCA TCGA-A1-A0SK GTF3C1 DEL Frame_Shift_Del 16 27480677 ACCACAATGC - 10 86 BRCA TCGA-A1-A0SK CPNE7 SNP Splice_Site 16 89644130 G A 44 92 BRCA TCGA-A1-A0SK OR1D5 SNP Missense_Mutation 17 2966828 C T 23 26 BRCA TCGA-A1-A0SK CCL23 SNP Missense_Mutation 17 34340326 G A 40 49 BRCA TCGA-A1-A0SK SHPK SNP Missense_Mutation 17 3518763 G C 41 82 BRCA TCGA-A1-A0SK BRCA1 SNP Silent 17 41245985 T C 55 51 BRCA TCGA-A1-A0SK CAMTA2 SNP Missense_Mutation 17 4883751 G A 41 74 BRCA TCGA-A1-A0SK TP53 SNP Missense_Mutation 17 7578532 A T 8 89 BRCA TCGA-A1-A0SK LAMA3 SNP Silent 18 21534511 G A 47 85 BRCA TCGA-A1-A0SK COPE SNP Missense_Mutation 19 19030117 C G 22 84 BRCA TCGA-A1-A0SK PEPD SNP Silent 19 33892709 G A 40 47 BRCA TCGA-A1-A0SK LSR SNP Missense_Mutation 19 35749935 A G 2 71 BRCA TCGA-A1-A0SK SERTAD3 SNP Missense_Mutation 19 40947651 G C 45 87 BRCA TCGA-A1-A0SK ZNF234 SNP Missense_Mutation 19 44660912 C G 20 37 BRCA TCGA-A1-A0SK TPRX1 SNP Missense_Mutation 19 48305574 A G 11 31 BRCA TCGA-A1-A0SK TPRX1 SNP Missense_Mutation 19 48305634 A G 11 32 BRCA TCGA-A1-A0SK NPAS2 SNP Missense_Mutation 2 101541639 C T 31 81 BRCA TCGA-A1-A0SK RFX8 SNP Silent 2 102014145 T A 55 32 BRCA TCGA-A1-A0SK BUB1 SNP Silent 2 111419365 C T 27 51 BRCA TCGA-A1-A0SK SCN9A SNP Silent 2 167159748 C T 29 59 BRCA TCGA-A1-A0SK TRAF3IP1 SNP Missense_Mutation 2 239264716 G A 41 77 BRCA TCGA-A1-A0SK VIT DEL In_Frame_Del 2 37010495 AAG - 1 73 BRCA TCGA-A1-A0SK LAMA5 SNP Missense_Mutation 20 60893617 C G 31 52 BRCA TCGA-A1-A0SK CECR2 SNP Silent 22 18022211 C T 18 43 BRCA TCGA-A1-A0SK LARGE SNP Missense_Mutation 22 34157362 G T 37 54 BRCA TCGA-A1-A0SK RHOXF2B SNP Missense_Mutation 23 119210984 G T 46 44 BRCA TCGA-A1-A0SK SLITRK4 SNP Nonsense_Mutation 23 142716453 G C 44 95 BRCA TCGA-A1-A0SK SLITRK4 SNP Missense_Mutation 23 142718044 G A 48 72 BRCA TCGA-A1-A0SK IDS SNP Missense_Mutation 23 148586645 C T 31 56 BRCA TCGA-A1-A0SK SSR4 SNP Missense_Mutation 23 153060173 G T 42 60 BRCA TCGA-A1-A0SK PJA1 SNP Missense_Mutation 23 68383057 C A 17 58 BRCA TCGA-A1-A0SK TEX11 SNP Missense_Mutation 23 69749698 C T 28 32 BRCA TCGA-A1-A0SK SHROOM2 SNP Silent 23 9914857 C T 20 72 BRCA TCGA-A1-A0SK YIPF7 SNP Missense_Mutation 4 44626655 C T 18 71 BRCA TCGA-A1-A0SK UGT2B15 SNP Nonsense_Mutation 4 69533861 C T 21 84 BRCA TCGA-A1-A0SK SCD5 SNP Missense_Mutation 4 83719603 C A 23 58 BRCA TCGA-A1-A0SK LIN28B SNP Silent 6 105526463 A T 8 49 BRCA TCGA-A1-A0SK COL21A1 SNP Silent 6 55940289 G T 43 39 BRCA TCGA-A1-A0SK ZNF777 SNP Silent 7 149128876 C T 23 55 BRCA TCGA-A1-A0SK ASB10 SNP Missense_Mutation 7 150878405 T C 50 87 BRCA TCGA-A1-A0SK INMT SNP Silent 7 30793498 G A 39 18 BRCA TCGA-A1-A0SK TG SNP Silent 8 133912567 C T 31 53 BRCA TCGA-A1-A0SK FLJ43860 SNP Missense_Mutation 8 142459700 C T 19 51 BRCA TCGA-A1-A0SK LOC100130274 SNP Missense_Mutation 8 144790102 C T 27 54 BRCA TCGA-A1-A0SK PLEC SNP Silent 8 145007427 G A 33 49 BRCA TCGA-A1-A0SK UNC5D SNP Missense_Mutation 8 35584005 G T 48 62 BRCA TCGA-A1-A0SM ACP6 SNP Missense_Mutation 1 147120061 T C 49 51 BRCA TCGA-A1-A0SM DCST1 SNP Nonsense_Mutation 1 155020578 A T 9 73 BRCA TCGA-A1-A0SM ATP1A4 SNP Missense_Mutation 1 160144388 C T 17 92 BRCA TCGA-A1-A0SM PDZD8 SNP Silent 10 119134106 G T 33 50 BRCA TCGA-A1-A0SM ZFAND4 SNP Missense_Mutation 10 46135376 T A 50 86 BRCA TCGA-A1-A0SM RRP12 SNP Silent 10 99130258 G A 37 57 BRCA TCGA-A1-A0SM ODZ4 SNP Missense_Mutation 11 78780799 A T 6 87 BRCA TCGA-A1-A0SM CLEC12A SNP Silent 12 10134654 T C 52 54 BRCA TCGA-A1-A0SM GOLGA3 SNP Missense_Mutation 12 133393258 C A 29 74 BRCA TCGA-A1-A0SM SCN8A SNP Silent 12 52099215 C T 23 47 BRCA TCGA-A1-A0SM ESYT1 SNP Missense_Mutation 12 56532266 C T 27 65 BRCA TCGA-A1-A0SM HEATR4 SNP Missense_Mutation 14 73989691 G A 39 51 BRCA TCGA-A1-A0SM SNP Silent 16 16468278 C T 27 49 BRCA TCGA-A1-A0SM ZNF229 SNP Missense_Mutation 19 44936532 T G 54 52 BRCA TCGA-A1-A0SM TBC1D8 SNP Nonsense_Mutation 2 101648789 C T 21 99 BRCA TCGA-A1-A0SM ID2 SNP Missense_Mutation 2 8822549 T C 52 89 BRCA TCGA-A1-A0SM SMARCA1 DEL Frame_Shift_Del 23 128614761 G - 45 97 BRCA TCGA-A1-A0SM CDY2A SNP Nonsense_Mutation 24 20138094 C T 17 48 BRCA TCGA-A1-A0SM CP SNP Silent 3 148896320 A G 9 63 BRCA TCGA-A1-A0SM LPP SNP Missense_Mutation 3 188584034 G A 39 83 BRCA TCGA-A1-A0SM AIM1 SNP Silent 6 106989161 T C 64 35 BRCA TCGA-A1-A0SM TCTE1 SNP Missense_Mutation 6 44250253 C T 27 78 BRCA TCGA-A1-A0SM ZAN SNP Silent 7 100349612 C T 30 32 BRCA TCGA-A1-A0SM STEAP2 DEL In_Frame_Del 7 89854877 GCC - 46 76 BRCA TCGA-A1-A0SM TSNARE1 SNP Missense_Mutation 8 143436021 G A 37 59 BRCA TCGA-A1-A0SM CSMD1 SNP Silent 8 3076793 G A 37 49 BRCA TCGA-A1-A0SM IKBKB SNP Missense_Mutation 8 42179428 G T 35 73 BRCA TCGA-A1-A0SN WDR47 SNP Missense_Mutation 1 109538271 C T 28 94 BRCA TCGA-A1-A0SN NPR1 SNP Missense_Mutation 1 153659695 A T 4 66 BRCA TCGA-A1-A0SN DNM3 SNP Missense_Mutation 1 172011231 G A 47 99 BRCA TCGA-A1-A0SN C4BPA SNP Missense_Mutation 1 207317171 C T 31 49 BRCA TCGA-A1-A0SN KIF26B SNP Silent 1 245583003 C T 27 49 BRCA TCGA-A1-A0SN PLCE1 SNP Missense_Mutation 10 96066253 G C 43 100 BRCA TCGA-A1-A0SN MUC5B SNP Missense_Mutation 11 1264225 C T 22 16 BRCA TCGA-A1-A0SN APLP2 SNP Silent 11 129993589 C T 27 60 BRCA TCGA-A1-A0SN OR5T3 SNP Missense_Mutation 11 56020439 T C 52 68 BRCA TCGA-A1-A0SN KNTC1 SNP Silent 12 123058840 T C 49 52 BRCA TCGA-A1-A0SN CLECL1 SNP Missense_Mutation 12 9885586 C T 23 49 BRCA TCGA-A1-A0SN OR4K14 SNP Silent 14 20482894 T C 50 47 BRCA TCGA-A1-A0SN HEATR4 DEL Frame_Shift_Del 14 73978799 AGGTCTCCCA - 7 76 BRCA TCGA-A1-A0SN NGB SNP Silent 14 77735657 C G 21 72 BRCA TCGA-A1-A0SN MGA SNP Missense_Mutation 15 42028642 C T 31 65 BRCA TCGA-A1-A0SN TICRR SNP Missense_Mutation 15 90143862 A G 1 81 BRCA TCGA-A1-A0SN PHKG2 SNP Missense_Mutation 16 30760196 G A 33 81 BRCA TCGA-A1-A0SN NCOR1 SNP Missense_Mutation 17 16029439 C G 32 77 BRCA TCGA-A1-A0SN NEK8 SNP Missense_Mutation 17 27061083 G C 33 96 BRCA TCGA-A1-A0SN CDC6 SNP Missense_Mutation 17 38457154 G C 45 69 BRCA TCGA-A1-A0SN CDC6 SNP Missense_Mutation 17 38458209 G C 33 92 BRCA TCGA-A1-A0SN KRT24 SNP Silent 17 38857431 G A 45 49 BRCA TCGA-A1-A0SN BPTF SNP Silent 17 65850252 T C 64 54 BRCA TCGA-A1-A0SN CABYR SNP Missense_Mutation 18 21735836 C T 29 81 BRCA TCGA-A1-A0SN EPS15L1 SNP Missense_Mutation 19 16528799 G C 39 66 BRCA TCGA-A1-A0SN ZNF682 SNP Missense_Mutation 19 20116956 C T 27 38 BRCA TCGA-A1-A0SN ZNF677 SNP Missense_Mutation 19 53741328 C T 29 56 BRCA TCGA-A1-A0SN DNAAF3 SNP Missense_Mutation 19 55677342 C G 26 61 BRCA TCGA-A1-A0SN DZANK1 SNP Missense_Mutation 20 18365188 T G 56 68 BRCA TCGA-A1-A0SN RBM39 SNP Silent 20 34312573 G A 37 40 BRCA TCGA-A1-A0SN ADAM33 SNP Missense_Mutation 20 3649953 G T 44 38 BRCA TCGA-A1-A0SN CDS2 SNP Silent 20 5165585 C A 29 56 BRCA TCGA-A1-A0SN ELFN2 SNP Missense_Mutation 22 37770941 G A 39 81 BRCA TCGA-A1-A0SN IRS4 SNP Silent 23 107978147 G T 46 64 BRCA TCGA-A1-A0SN HS6ST2 SNP Missense_Mutation 23 131762534 C T 31 57 BRCA TCGA-A1-A0SN SPANXN2 SNP Missense_Mutation 23 142795593 C G 30 48 BRCA TCGA-A1-A0SN IQSEC2 SNP Missense_Mutation 23 53265517 G C 44 62 BRCA TCGA-A1-A0SN ACRC SNP Missense_Mutation 23 70832365 G C 33 53 BRCA TCGA-A1-A0SN ARHGAP31 SNP Missense_Mutation 3 119133124 C G 24 65 BRCA TCGA-A1-A0SN DNAH12 SNP Silent 3 57419477 A G 8 53 BRCA TCGA-A1-A0SN DNAH5 SNP Missense_Mutation 5 13865914 C A 32 59 BRCA TCGA-A1-A0SN MCHR2 SNP Missense_Mutation 6 100404004 G C 33 55 BRCA TCGA-A1-A0SN TRIM39 SNP Missense_Mutation 6 30298612 C T 31 65 BRCA TCGA-A1-A0SN ATAT1 SNP Splice_Site 6 30613843 G C 35 75 BRCA TCGA-A1-A0SN DPCR1 SNP Missense_Mutation 6 30917380 C T 24 75 BRCA TCGA-A1-A0SN SPAM1 SNP Nonsense_Mutation 7 123594426 C T 29 37 BRCA TCGA-A1-A0SN GRM8 SNP Missense_Mutation 7 126544645 T G 61 90 BRCA TCGA-A1-A0SN AKAP9 DEL Frame_Shift_Del 7 91631496 AG - 15 58 BRCA TCGA-A1-A0SN XKR4 SNP Missense_Mutation 8 56436404 C T 21 88 BRCA TCGA-A1-A0SO EPS8L3 SNP Missense_Mutation 1 110301155 G T 35 61 BRCA TCGA-A1-A0SO AP4B1 SNP Silent 1 114447319 C T 24 62 BRCA TCGA-A1-A0SO HIPK1 SNP Silent 1 114514630 C T 32 57 BRCA TCGA-A1-A0SO SYCP1 SNP Missense_Mutation 1 115487026 C G 29 60 BRCA TCGA-A1-A0SO CASQ2 SNP Missense_Mutation 1 116245613 C T 19 56 BRCA TCGA-A1-A0SO VPS13D SNP Missense_Mutation 1 12343711 T C 52 53 BRCA TCGA-A1-A0SO HNRNPCL1 SNP Missense_Mutation 1 12907909 C G 24 53 BRCA TCGA-A1-A0SO BCL9 SNP Missense_Mutation 1 147090653 C T 23 78 BRCA TCGA-A1-A0SO SETDB1 SNP Missense_Mutation 1 150916412 G T 45 96 BRCA TCGA-A1-A0SO DARS2 SNP Missense_Mutation 1 173808592 G C 33 57 BRCA TCGA-A1-A0SO C1orf222 DEL Frame_Shift_Del 1 1895246 TCGTGTAGGTGGTG - 50 60 BRCA TCGA-A1-A0SO ZBTB41 SNP Missense_Mutation 1 197128698 G C 44 47 BRCA TCGA-A1-A0SO IGFN1 SNP Missense_Mutation 1 201184703 T A 55 67 BRCA TCGA-A1-A0SO PM20D1 SNP Missense_Mutation 1 205797837 C A 28 56 BRCA TCGA-A1-A0SO PM20D1 SNP Silent 1 205814011 G A 35 50 BRCA TCGA-A1-A0SO BROX DEL Frame_Shift_Del 1 222903439 TTCAGGACATCTG - 56 43 BRCA TCGA-A1-A0SO BROX DEL Frame_Shift_Del 1 222903458 A - 15 51 BRCA TCGA-A1-A0SO OBSCN SNP Silent 1 228561695 C T 32 59 BRCA TCGA-A1-A0SO CEP170 SNP Missense_Mutation 1 243328748 G T 34 81 BRCA TCGA-A1-A0SO SRSF4 SNP Missense_Mutation 1 29475392 C T 22 72 BRCA TCGA-A1-A0SO HCRTR1 SNP Missense_Mutation 1 32086466 T A 59 85 BRCA TCGA-A1-A0SO HPCA SNP Silent 1 33359202 C A 32 82 BRCA TCGA-A1-A0SO SFPQ DEL Frame_Shift_Del 1 35653669 TT - 56 57 BRCA TCGA-A1-A0SO NCDN SNP Missense_Mutation 1 36031100 C G 22 64 BRCA TCGA-A1-A0SO EIF2C4 SNP Missense_Mutation 1 36307019 C T 19 100 BRCA TCGA-A1-A0SO MACF1 DEL Frame_Shift_Del 1 39753221 TA - 57 89 BRCA TCGA-A1-A0SO LRRC42 SNP Missense_Mutation 1 54433480 C G 26 53 BRCA TCGA-A1-A0SO ATG4C SNP Splice_site 1 63300523 G A 35 97 BRCA TCGA-A1-A0SO GIPC2 DEL Splice_Site 1 78546542 AAGGT - 1 91 BRCA TCGA-A1-A0SO KIAA1107 SNP Nonsense_Mutation 1 92634546 C T 21 62 BRCA TCGA-A1-A0SO SPAG6 SNP Missense_Mutation 10 22675859 A G 12 79 BRCA TCGA-A1-A0SO GPR158 SNP Missense_Mutation 10 25755604 C A 24 65 BRCA TCGA-A1-A0SO PCDH15 SNP Splice_site 10 55826517 T A 56 74 BRCA TCGA-A1-A0SO MYPN SNP Missense_Mutation 10 69881526 T A 64 44 BRCA TCGA-A1-A0SO DLG5 SNP Missense_Mutation 10 79589152 C G 18 68 BRCA TCGA-A1-A0SO OPN4 SNP Missense_Mutation 10 88425489 G T 34 57 BRCA TCGA-A1-A0SO ALKBH8 DEL Frame_Shift_Del 11 107424599 CAAT - 21 88 BRCA TCGA-A1-A0SO C11orf88 SNP Missense_Mutation 11 111385523 C A 22 50 BRCA TCGA-A1-A0SO FAM55B SNP Missense_Mutation 11 114568988 C A 18 51 BRCA TCGA-A1-A0SO MUC5B SNP Missense_Mutation 11 1262629 T G 59 72 BRCA TCGA-A1-A0SO OSBPL5 SNP Silent 11 3111849 T A 50 50 BRCA TCGA-A1-A0SO KIAA1549L SNP Missense_Mutation 11 33667568 A T 7 89 BRCA TCGA-A1-A0SO OR51F2 SNP Missense_Mutation 11 4842915 G T 44 70 BRCA TCGA-A1-A0SO TNKS1BP1 SNP Missense_Mutation 11 57080433 C A 22 53 BRCA TCGA-A1-A0SO ZDHHC5 SNP Nonsense_Mutation 11 57466569 C G 29 91 BRCA TCGA-A1-A0SO OR5AN1 SNP Missense_Mutation 11 59131936 C T 20 43 BRCA TCGA-A1-A0SO POLD4 SNP Missense_Mutation 11 67119477 A G 15 67 BRCA TCGA-A1-A0SO LRP5 SNP Missense_Mutation 11 68181253 G A 34 85 BRCA TCGA-A1-A0SO PPFIA1 SNP Missense_Mutation 11 70118391 A C 7 59 BRCA TCGA-A1-A0SO HEPHL1 SNP Missense_Mutation 11 93819195 G T 43 50 BRCA TCGA-A1-A0SO CLIP1 SNP Silent 12 122825432 G C 33 52 BRCA TCGA-A1-A0SO SBNO1 SNP Missense_Mutation 12 123794118 C G 30 98 BRCA TCGA-A1-A0SO EIF2B1 SNP Missense_Mutation 12 124114778 T C 54 76 BRCA TCGA-A1-A0SO NCOR2 SNP Missense_Mutation 12 124824901 C A 28 50 BRCA TCGA-A1-A0SO ZNF268 SNP Missense_Mutation 12 133779830 A G 3 55 BRCA TCGA-A1-A0SO KCNA5 SNP Missense_Mutation 12 5154349 T A 55 89 BRCA TCGA-A1-A0SO RDH5 DEL Frame_Shift_Del 12 56118211 GCTACAGCCCAGGTTGGGATGCCAAGCT - 38 94 BRCA TCGA-A1-A0SO CD4 SNP Missense_Mutation 12 6925542 C A 29 63 BRCA TCGA-A1-A0SO TSPAN8 SNP Missense_Mutation 12 71526567 C A 21 83 BRCA TCGA-A1-A0SO ZDHHC17 SNP Missense_Mutation 12 77236736 T A 54 92 BRCA TCGA-A1-A0SO NAV3 SNP Silent 12 78604291 C A 22 49 BRCA TCGA-A1-A0SO A2ML1 SNP Missense_Mutation 12 8994108 G C 41 78 BRCA TCGA-A1-A0SO FRY DEL Frame_Shift_Del 13 32818202 TGTGCAGCAGCCCCTGC - 59 43 BRCA TCGA-A1-A0SO LOC220429 SNP Missense_Mutation 13 50465611 G A 45 56 BRCA TCGA-A1-A0SO MYCBP2 SNP Missense_Mutation 13 77672956 T A 56 89 BRCA TCGA-A1-A0SO RNF113B SNP Silent 13 98828564 C T 31 40 BRCA TCGA-A1-A0SO TNFAIP2 SNP Missense_Mutation 14 103601617 C T 27 50 BRCA TCGA-A1-A0SO CDH24 SNP Missense_Mutation 14 23523514 C G 30 96 BRCA TCGA-A1-A0SO MYH7 SNP Silent 14 23898233 G A 43 50 BRCA TCGA-A1-A0SO RNF31 SNP Missense_Mutation 14 24617315 C A 19 94 BRCA TCGA-A1-A0SO SFTA3 SNP Splice_site 14 36960496 C A 18 50 BRCA TCGA-A1-A0SO PLEK2 DEL Frame_Shift_Del 14 67854072 TCCACTCGGC - 50 86 BRCA TCGA-A1-A0SO ZNF410 SNP Missense_Mutation 14 74371680 C T 17 84 BRCA TCGA-A1-A0SO TMED8 SNP Missense_Mutation 14 77808211 T C 58 93 BRCA TCGA-A1-A0SO ADAMTS17 SNP Missense_Mutation 15 100516261 G A 41 96 BRCA TCGA-A1-A0SO CHRM5 DEL Frame_Shift_Del 15 34355438 G - 47 100 BRCA TCGA-A1-A0SO DUOX1 SNP Silent 15 45453997 G A 46 54 BRCA TCGA-A1-A0SO SCG3 SNP Missense_Mutation 15 51984365 G T 42 61 BRCA TCGA-A1-A0SO SNX1 SNP Missense_Mutation 15 64428539 G C 39 67 BRCA TCGA-A1-A0SO NOX5 SNP Silent 15 69328237 C T 32 53 BRCA TCGA-A1-A0SO HCN4 SNP Silent 15 73624616 G A 40 51 BRCA TCGA-A1-A0SO STRA6 SNP Missense_Mutation 15 74476323 G A 35 75 BRCA TCGA-A1-A0SO COMMD4 SNP Missense_Mutation 15 75632150 G A 46 52 BRCA TCGA-A1-A0SO SLC28A1 SNP Missense_Mutation 15 85438332 C T 23 44 BRCA TCGA-A1-A0SO C15orf38-AP3S2 SNP Missense_Mutation 15 90446465 C T 26 91 BRCA TCGA-A1-A0SO C16orf62 SNP Missense_Mutation 16 19566935 T G 55 13 BRCA TCGA-A1-A0SO C16orf62 SNP Missense_Mutation 16 19651363 G T 48 100 BRCA TCGA-A1-A0SO E4F1 SNP Silent 16 2283444 C T 23 21 BRCA TCGA-A1-A0SO CACNG3 SNP Missense_Mutation 16 24366196 C T 19 75 BRCA TCGA-A1-A0SO SRRM2 SNP Silent 16 2817240 G A 39 53 BRCA TCGA-A1-A0SO TUFM SNP Missense_Mutation 16 28854300 C T 18 88 BRCA TCGA-A1-A0SO CD19 SNP Missense_Mutation 16 28944399 C G 22 51 BRCA TCGA-A1-A0SO COG8 SNP Missense_Mutation 16 69373380 G C 34 65 BRCA TCGA-A1-A0SO TERF2 SNP Missense_Mutation 16 69419547 A C 3 62 BRCA TCGA-A1-A0SO HSD17B2 SNP Missense_Mutation 16 82069075 C A 22 44 BRCA TCGA-A1-A0SO MYH4 DEL In_Frame_Del 17 10348650 CTT - 28 78 BRCA TCGA-A1-A0SO DNAH9 SNP Missense_Mutation 17 11515049 A T 11 84 BRCA TCGA-A1-A0SO DNAH9 SNP Missense_Mutation 17 11786995 C A 20 70 BRCA TCGA-A1-A0SO NEK8 SNP Missense_Mutation 17 27065227 G T 40 100 BRCA TCGA-A1-A0SO LIG3 SNP Silent 17 33310177 G T 45 54 BRCA TCGA-A1-A0SO C17orf66 SNP Missense_Mutation 17 34182707 G C 36 56 BRCA TCGA-A1-A0SO KRT31 SNP Silent 17 39553726 C A 25 52 BRCA TCGA-A1-A0SO KRT36 SNP Missense_Mutation 17 39645694 C A 20 60 BRCA TCGA-A1-A0SO HAP1 SNP Silent 17 39889028 C T 27 43 BRCA TCGA-A1-A0SO BRCA1 SNP Splice_Site 17 41276033 C T 18 69 BRCA TCGA-A1-A0SO ABI3 SNP Silent 17 47297295 G A 40 44 BRCA TCGA-A1-A0SO SMG8 SNP Missense_Mutation 17 57288043 C A 28 77 BRCA TCGA-A1-A0SO BRIP1 SNP Silent 17 59793371 T G 57 53 BRCA TCGA-A1-A0SO GH2 SNP Missense_Mutation 17 61958115 C A 22 65 BRCA TCGA-A1-A0SO LRRC37A3 SNP Missense_Mutation 17 62856626 T C 54 61 BRCA TCGA-A1-A0SO RGS9 SNP Silent 17 63200288 C T 24 67 BRCA TCGA-A1-A0SO HELZ SNP Splice_Site 17 65144684 C A 20 98 BRCA TCGA-A1-A0SO EVPL SNP Missense_Mutation 17 74006094 C G 32 61 BRCA TCGA-A1-A0SO TP53 SNP Missense_Mutation 17 7578190 T C 49 88 BRCA TCGA-A1-A0SO CBX4 SNP Missense_Mutation 17 77809031 C T 23 59 BRCA TCGA-A1-A0SO ALOX12B SNP Silent 17 7980479 G T 33 60 BRCA TCGA-A1-A0SO WDR45L SNP Missense_Mutation 17 80574405 A C 10 88 BRCA TCGA-A1-A0SO ASXL3 SNP Missense_Mutation 18 31324097 C A 30 58 BRCA TCGA-A1-A0SO GALNT1 SNP Silent 18 33267013 C T 29 96 BRCA TCGA-A1-A0SO ELP2 SNP Missense_Mutation 18 33726241 C G 20 93 BRCA TCGA-A1-A0SO WDR7 SNP Missense_Mutation 18 54444046 C G 28 90 BRCA TCGA-A1-A0SO NARS SNP Missense_Mutation 18 55274697 G T 33 76 BRCA TCGA-A1-A0SO BCL2 SNP Silent 18 60985588 G A 33 55 BRCA TCGA-A1-A0SO PPAN-P2RY11 SNP Missense_Mutation 19 10224439 G T 48 50 BRCA TCGA-A1-A0SO ZNF442 SNP Missense_Mutation 19 12461308 A T 7 71 BRCA TCGA-A1-A0SO BEST2 SNP Missense_Mutation 19 12867020 G C 43 93 BRCA TCGA-A1-A0SO CPAMD8 SNP Missense_Mutation 19 17015092 C A 17 78 BRCA TCGA-A1-A0SO TMEM161A SNP Silent 19 19232393 C G 25 61 BRCA TCGA-A1-A0SO ZNF714 SNP Translation_Start_Site 19 21281038 G A 36 56 BRCA TCGA-A1-A0SO KIRREL2 SNP Missense_Mutation 19 36352899 G T 35 53 BRCA TCGA-A1-A0SO SIPA1L3 SNP Missense_Mutation 19 38621312 G A 40 84 BRCA TCGA-A1-A0SO FCGBP SNP Missense_Mutation 19 40412161 A C 11 60 BRCA TCGA-A1-A0SO ZNF780A SNP Missense_Mutation 19 40587737 C A 32 55 BRCA TCGA-A1-A0SO HIPK4 SNP Missense_Mutation 19 40889772 T A 59 67 BRCA TCGA-A1-A0SO SPTBN4 SNP Missense_Mutation 19 41072203 G C 42 96 BRCA TCGA-A1-A0SO HDGFRP2 SNP Silent 19 4493843 G T 37 13 BRCA TCGA-A1-A0SO PLEKHA4 SNP Silent 19 49344514 G C 46 49 BRCA TCGA-A1-A0SO ZNF528 SNP Missense_Mutation 19 52919021 T G 56 79 BRCA TCGA-A1-A0SO NLRP12 SNP Missense_Mutation 19 54314363 C T 27 49 BRCA TCGA-A1-A0SO SSC5D SNP Nonsense_Mutation 19 56024423 C A 29 50 BRCA TCGA-A1-A0SO FAM123C SNP Silent 2 131520314 G A 47 37 BRCA TCGA-A1-A0SO LCT SNP Silent 2 136575337 C T 24 51 BRCA TCGA-A1-A0SO TANC1 SNP Missense_Mutation 2 160086123 G C 42 100 BRCA TCGA-A1-A0SO SCN7A SNP Missense_Mutation 2 167322362 C T 17 99 BRCA TCGA-A1-A0SO CHN1 SNP Missense_Mutation 2 175689201 A T 3 92 BRCA TCGA-A1-A0SO TTN SNP Silent 2 179428167 C T 19 29 BRCA TCGA-A1-A0SO TTN SNP Missense_Mutation 2 179558410 T A 54 76 BRCA TCGA-A1-A0SO FAM117B SNP Missense_Mutation 2 203560685 A T 16 88 BRCA TCGA-A1-A0SO IKZF2 SNP Missense_Mutation 2 213872586 T A 51 73 BRCA TCGA-A1-A0SO CXCR1 DNP Missense_Mutation 2 219029170 CC AA 26 82 BRCA TCGA-A1-A0SO COL4A3 SNP Missense_Mutation 2 228147120 T A 52 76 BRCA TCGA-A1-A0SO PKDCC SNP Silent 2 42284801 G A 33 56 BRCA TCGA-A1-A0SO RTN4 SNP Missense_Mutation 2 55253457 G T 46 40 BRCA TCGA-A1-A0SO CCDC104 SNP Missense_Mutation 2 55771103 A G 4 53 BRCA TCGA-A1-A0SO USP34 SNP Silent 2 61415828 A T 11 53 BRCA TCGA-A1-A0SO ARHGAP25 SNP Missense_Mutation 2 69040480 C A 26 99 BRCA TCGA-A1-A0SO DYSF SNP Missense_Mutation 2 71795113 G A 46 63 BRCA TCGA-A1-A0SO TACR1 SNP Silent 2 75425803 T A 55 8 BRCA TCGA-A1-A0SO REEP1 SNP Missense_Mutation 2 86479180 C A 17 84 BRCA TCGA-A1-A0SO PROCR SNP Silent 20 33764173 G A 44 56 BRCA TCGA-A1-A0SO CHD6 SNP Missense_Mutation 20 40033370 G C 42 60 BRCA TCGA-A1-A0SO MATN4 SNP Missense_Mutation 20 43927146 C A 20 99 BRCA TCGA-A1-A0SO EYA2 SNP Missense_Mutation 20 45717926 A T 10 88 BRCA TCGA-A1-A0SO C20orf43 SNP Missense_Mutation 20 55093275 A T 3 77 BRCA TCGA-A1-A0SO PMEPA1 SNP Nonsense_Mutation 20 56227204 C A 30 72 BRCA TCGA-A1-A0SO SAMSN1 SNP Silent 21 15872964 A G 8 51 BRCA TCGA-A1-A0SO ADAMTS1 SNP Silent 21 28212817 C G 19 53 BRCA TCGA-A1-A0SO ERG SNP Missense_Mutation 21 39775576 T A 56 49 BRCA TCGA-A1-A0SO KRTAP10-7 SNP Missense_Mutation 21 46021285 G T 46 61 BRCA TCGA-A1-A0SO PI4KA DNP Missense_Mutation 22 21150531 TC CA 50 89 BRCA TCGA-A1-A0SO GGT5 SNP Missense_Mutation 22 24627424 C A 30 60 BRCA TCGA-A1-A0SO MYO18B SNP Missense_Mutation 22 26307000 G A 39 88 BRCA TCGA-A1-A0SO CSF2RB SNP Missense_Mutation 22 37322204 A T 6 47 BRCA TCGA-A1-A0SO CACNA1I SNP Silent 22 40075213 C T 31 50 BRCA TCGA-A1-A0SO ENTHD1 SNP Missense_Mutation 22 40139929 G T 33 36 BRCA TCGA-A1-A0SO CHADL SNP Silent 22 41635537 G A 34 54 BRCA TCGA-A1-A0SO CSF2RA SNP Missense_Mutation 23 1422866 G A 40 44 BRCA TCGA-A1-A0SO IDS SNP Missense_Mutation 23 148568462 C T 30 52 BRCA TCGA-A1-A0SO ATP2B3 SNP Missense_Mutation 23 152830499 G C 37 94 BRCA TCGA-A1-A0SO ARSE SNP Missense_Mutation 23 2861123 C G 21 69 BRCA TCGA-A1-A0SO CACNA1F SNP Missense_Mutation 23 49066136 C A 24 95 BRCA TCGA-A1-A0SO CACNA1F SNP Silent 23 49089736 G A 41 55 BRCA TCGA-A1-A0SO GAGE10 SNP Missense_Mutation 23 49173663 G T 34 40 BRCA TCGA-A1-A0SO LAS1L SNP Missense_Mutation 23 64734836 T G 59 55 BRCA TCGA-A1-A0SO AR SNP Missense_Mutation 23 66942814 C A 20 53 BRCA TCGA-A1-A0SO BBX SNP Missense_Mutation 3 107466845 A G 14 51 BRCA TCGA-A1-A0SO MORC1 SNP Missense_Mutation 3 108812333 C A 21 76 BRCA TCGA-A1-A0SO NDUFB4 SNP Missense_Mutation 3 120315286 C T 23 67 BRCA TCGA-A1-A0SO GOLGB1 SNP Nonsense_Mutation 3 121415745 C A 30 65 BRCA TCGA-A1-A0SO MYLK SNP Missense_Mutation 3 123512607 G T 42 58 BRCA TCGA-A1-A0SO GYG1 SNP Splice_site 3 148712063 A T 11 88 BRCA TCGA-A1-A0SO GHSR SNP Missense_Mutation 3 172165999 A T 10 62 BRCA TCGA-A1-A0SO EPHB3 SNP Missense_Mutation 3 184299147 G T 40 54 BRCA TCGA-A1-A0SO SDHAP2 SNP Silent 3 195400839 C T 31 49 BRCA TCGA-A1-A0SO LRRC33 SNP Missense_Mutation 3 196387493 C G 24 78 BRCA TCGA-A1-A0SO MFI2 SNP Silent 3 196743115 C T 19 43 BRCA TCGA-A1-A0SO NBEAL2 DEL Frame_Shift_Del 3 47041418 CTTCT - 28 83 BRCA TCGA-A1-A0SO UQCRC1 DEL In_Frame_Del 3 48638832 CTGCATATGTCCATGGGATGC - 32 70 BRCA TCGA-A1-A0SO ARL8B SNP Missense_Mutation 3 5164036 C G 31 62 BRCA TCGA-A1-A0SO DCLK2 SNP Missense_Mutation 4 151145689 C G 17 79 BRCA TCGA-A1-A0SO ODZ3 SNP Missense_Mutation 4 183522142 T A 54 49 BRCA TCGA-A1-A0SO KLKB1 SNP Missense_Mutation 4 187159474 G A 40 52 BRCA TCGA-A1-A0SO HERC3 SNP Silent 4 89597532 C T 21 56 BRCA TCGA-A1-A0SO UNC5C SNP Missense_Mutation 4 96199426 C G 22 86 BRCA TCGA-A1-A0SO DNAH5 SNP Missense_Mutation 5 13868016 T A 54 88 BRCA TCGA-A1-A0SO PCDH12 SNP Missense_Mutation 5 141329074 G A 35 54 BRCA TCGA-A1-A0SO GRIA1 DEL Frame_Shift_Del 5 153085287 ATCACTTTGGTCCGGGA - 16 88 BRCA TCGA-A1-A0SO SGCD SNP Silent 5 156184694 A G 10 49 BRCA TCGA-A1-A0SO NIPAL4 SNP Missense_Mutation 5 156890274 C T 31 51 BRCA TCGA-A1-A0SO BTNL9 SNP Silent 5 180475204 C A 25 44 BRCA TCGA-A1-A0SO CDH18 SNP Missense_Mutation 5 19503214 A C 4 86 BRCA TCGA-A1-A0SO CCDC127 SNP Missense_Mutation 5 205576 C A 28 45 BRCA TCGA-A1-A0SO NADKD1 SNP Silent 5 36211996 C T 25 59 BRCA TCGA-A1-A0SO FGF10 SNP Silent 5 44388749 G T 35 97 BRCA TCGA-A1-A0SO PPAP2A SNP Missense_Mutation 5 54771192 A C 13 78 BRCA TCGA-A1-A0SO ISCA1P1 SNP Silent 5 62072647 C G 22 54 BRCA TCGA-A1-A0SO ANKRD31 SNP Silent 5 74400296 C A 30 41 BRCA TCGA-A1-A0SO ARSB SNP Missense_Mutation 5 78181641 C T 22 99 BRCA TCGA-A1-A0SO LYSMD3 SNP Missense_Mutation 5 89815236 G C 45 63 BRCA TCGA-A1-A0SO TSPYL1 SNP Missense_Mutation 6 116599945 G C 33 72 BRCA TCGA-A1-A0SO RANBP9 SNP Missense_Mutation 6 13632730 G A 40 73 BRCA TCGA-A1-A0SO SASH1 SNP Splice_site 6 148861581 A T 13 78 BRCA TCGA-A1-A0SO UST SNP Silent 6 149068740 C T 32 61 BRCA TCGA-A1-A0SO EZR SNP Missense_Mutation 6 159190927 C A 28 53 BRCA TCGA-A1-A0SO T SNP Missense_Mutation 6 166571853 G C 47 92 BRCA TCGA-A1-A0SO OR5V1 SNP Silent 6 29323322 G C 35 48 BRCA TCGA-A1-A0SO DPCR1 SNP Missense_Mutation 6 30916555 C G 20 39 BRCA TCGA-A1-A0SO BTBD9 SNP Missense_Mutation 6 38142776 G T 44 61 BRCA TCGA-A1-A0SO PPP2R5D SNP Silent 6 42974675 C T 28 86 BRCA TCGA-A1-A0SO SLC35B2 SNP Silent 6 44223091 G C 35 62 BRCA TCGA-A1-A0SO FILIP1 SNP Missense_Mutation 6 76023340 G T 48 66 BRCA TCGA-A1-A0SO SLC35B3 SNP Silent 6 8417178 A G 4 60 BRCA TCGA-A1-A0SO MOSPD3 SNP Silent 7 100210890 C T 17 62 BRCA TCGA-A1-A0SO MUC17 SNP Missense_Mutation 7 100684815 C T 20 46 BRCA TCGA-A1-A0SO SLC13A4 SNP Silent 7 135380202 G T 46 54 BRCA TCGA-A1-A0SO DGKI SNP Missense_Mutation 7 137339506 C A 31 73 BRCA TCGA-A1-A0SO TBXAS1 SNP Missense_Mutation 7 139661880 G C 48 61 BRCA TCGA-A1-A0SO CLCN1 SNP Missense_Mutation 7 143013381 C A 26 57 BRCA TCGA-A1-A0SO NOBOX SNP Silent 7 144101772 C T 26 38 BRCA TCGA-A1-A0SO KRBA1 SNP Missense_Mutation 7 149425677 C T 24 50 BRCA TCGA-A1-A0SO HTR5A SNP Missense_Mutation 7 154862919 G T 39 97 BRCA TCGA-A1-A0SO RBM33 SNP Silent 7 155499624 C A 28 55 BRCA TCGA-A1-A0SO AMZ1 SNP Nonsense_Mutation 7 2740317 C T 21 48 BRCA TCGA-A1-A0SO TRIL SNP Missense_Mutation 7 28997619 C T 26 65 BRCA TCGA-A1-A0SO TBX20 SNP Missense_Mutation 7 35242302 G T 43 97 BRCA TCGA-A1-A0SO URGCP SNP Missense_Mutation 7 43918056 T A 62 89 BRCA TCGA-A1-A0SO ADCY1 SNP Missense_Mutation 7 45662233 T G 50 86 BRCA TCGA-A1-A0SO CACNA2D1 SNP Missense_Mutation 7 81643739 C A 20 59 BRCA TCGA-A1-A0SO GRM3 SNP Missense_Mutation 7 86468211 G C 33 100 BRCA TCGA-A1-A0SO TNFRSF11B SNP Nonsense_Mutation 8 119938847 C A 32 69 BRCA TCGA-A1-A0SO NOV SNP Missense_Mutation 8 120431463 A T 11 94 BRCA TCGA-A1-A0SO CPSF1 SNP Silent 8 145623208 G T 42 53 BRCA TCGA-A1-A0SO KCNU1 SNP Silent 8 36671892 T C 60 55 BRCA TCGA-A1-A0SO ANK1 SNP Missense_Mutation 8 41580687 C G 32 100 BRCA TCGA-A1-A0SO IKBKB SNP Missense_Mutation 8 42177138 G A 41 84 BRCA TCGA-A1-A0SO LYN SNP Missense_Mutation 8 56863331 G A 45 100 BRCA TCGA-A1-A0SO RPL35 SNP Missense_Mutation 9 127620210 G C 38 100 BRCA TCGA-A1-A0SO ASS1 SNP Missense_Mutation 9 133355834 G C 37 79 BRCA TCGA-A1-A0SO PHF2 DEL Frame_Shift_Del 9 96425216 A - 5 73 BRCA TCGA-A1-A0SP TXNIP SNP Missense_Mutation 1 145440077 A G 8 59 BRCA TCGA-A1-A0SP ZNF687 SNP Missense_Mutation 1 151259248 G A 41 80 BRCA TCGA-A1-A0SP ASPM DEL Frame_Shift_Del 1 197056085 G - 47 53 BRCA TCGA-A1-A0SP ZC3H11A SNP Missense_Mutation 1 203798941 C T 17 63 BRCA TCGA-A1-A0SP KCTD3 SNP Missense_Mutation 1 215753269 C G 19 62 BRCA TCGA-A1-A0SP ARID1A SNP Missense_Mutation 1 27106816 C T 23 75 BRCA TCGA-A1-A0SP ZBTB8B SNP Missense_Mutation 1 32937081 C T 27 53 BRCA TCGA-A1-A0SP CCDC172 DEL Frame_Shift_Del 10 118101618 A - 12 80 BRCA TCGA-A1-A0SP KIF20B DEL Frame_Shift_Del 10 91483856 T - 56 76 BRCA TCGA-A1-A0SP PDE6C SNP Missense_Mutation 10 95394645 A C 8 77 BRCA TCGA-A1-A0SP ALDH18A1 SNP Missense_Mutation 10 97371060 A G 12 86 BRCA TCGA-A1-A0SP ABCG4 SNP Silent 11 119028976 C T 21 60 BRCA TCGA-A1-A0SP TECTA SNP Silent 11 121031032 C T 19 40 BRCA TCGA-A1-A0SP ATG2A SNP Silent 11 64668490 C T 26 56 BRCA TCGA-A1-A0SP BATF2 SNP Nonsense_Mutation 11 64756807 G A 48 61 BRCA TCGA-A1-A0SP ARHGEF17 SNP Missense_Mutation 11 73020359 G T 39 63 BRCA TCGA-A1-A0SP YEATS4 INS Frame_Shift_Ins 12 69784092 - A 49 73 BRCA TCGA-A1-A0SP LOC643677 SNP Missense_Mutation 13 103393722 C A 32 51 BRCA TCGA-A1-A0SP PCDH20 SNP Missense_Mutation 13 61985500 A T 12 91 BRCA TCGA-A1-A0SP TXNDC16 SNP Nonsense_Mutation 14 52978095 C A 30 65 BRCA TCGA-A1-A0SP CYFIP1 SNP Missense_Mutation 15 22947066 G A 41 99 BRCA TCGA-A1-A0SP NUSAP1 DEL Frame_Shift_Del 15 41669445 A - 8 50 BRCA TCGA-A1-A0SP C15orf58 SNP Missense_Mutation 15 90784940 A G 11 61 BRCA TCGA-A1-A0SP KCNG4 SNP Silent 16 84270972 G A 36 58 BRCA TCGA-A1-A0SP GPATCH8 SNP Silent 17 42477336 C T 20 62 BRCA TCGA-A1-A0SP TP53 SNP Nonsense_Mutation 17 7578382 G C 45 58 BRCA TCGA-A1-A0SP DNAH17 SNP Missense_Mutation 17 76433854 C T 27 99 BRCA TCGA-A1-A0SP POU2F2 SNP Missense_Mutation 19 42599447 G T 42 75 BRCA TCGA-A1-A0SP LRRC4B SNP Missense_Mutation 19 51022151 G T 37 59 BRCA TCGA-A1-A0SP ZNF749 SNP Silent 19 57956358 C T 25 49 BRCA TCGA-A1-A0SP BSG SNP Missense_Mutation 19 580426 C T 22 60 BRCA TCGA-A1-A0SP SLC4A10 SNP Missense_Mutation 2 162757469 G A 41 100 BRCA TCGA-A1-A0SP COPS7B SNP Missense_Mutation 2 232653392 C T 30 93 BRCA TCGA-A1-A0SP KCNQ2 SNP Missense_Mutation 20 62045493 A G 2 78 BRCA TCGA-A1-A0SP POTEH SNP Missense_Mutation 22 16287562 G C 34 52 BRCA TCGA-A1-A0SP THAP7 SNP Missense_Mutation 22 21354432 C T 23 65 BRCA TCGA-A1-A0SP SHANK3 SNP Missense_Mutation 22 51133438 T G 59 38 BRCA TCGA-A1-A0SP ALG13 SNP Missense_Mutation 23 110970225 G A 45 64 BRCA TCGA-A1-A0SP ZMYM3 SNP Missense_Mutation 23 70462188 G C 35 81 BRCA TCGA-A1-A0SP LRIT3 SNP Silent 4 110789053 C A 22 49 BRCA TCGA-A1-A0SP FBXW7 DEL Frame_Shift_Del 4 153253808 G - 37 88 BRCA TCGA-A1-A0SP MARCH1 SNP Silent 4 164507069 G A 38 59 BRCA TCGA-A1-A0SP THBS4 SNP Silent 5 79375018 G A 39 12 BRCA TCGA-A1-A0SP HIST1H2BK SNP Missense_Mutation 6 27114460 C T 19 67 BRCA TCGA-A1-A0SP MMS22L SNP Missense_Mutation 6 97634387 G A 38 84 BRCA TCGA-A1-A0SP SDK1 SNP Missense_Mutation 7 4185495 G A 35 64 BRCA TCGA-A1-A0SP EPPK1 SNP Silent 8 144947299 C T 30 59 BRCA TCGA-A1-A0SP SVEP1 SNP Missense_Mutation 9 113170187 C G 21 100 BRCA TCGA-A1-A0SQ MTOR SNP Silent 1 11300583 G C 33 58 BRCA TCGA-A1-A0SQ FAM71A SNP Missense_Mutation 1 212799630 G A 33 50 BRCA TCGA-A1-A0SQ WNT4 SNP Missense_Mutation 1 22446727 G A 40 95 BRCA TCGA-A1-A0SQ GATA3 INS Frame_Shift_Ins 10 8115955 - C 6 92 BRCA TCGA-A1-A0SQ PLCE1 SNP Missense_Mutation 10 96076406 C A 18 79 BRCA TCGA-A1-A0SQ HYOU1 SNP Missense_Mutation 11 118917361 G A 39 56 BRCA TCGA-A1-A0SQ ANKLE2 SNP Missense_Mutation 12 133313525 G A 39 95 BRCA TCGA-A1-A0SQ TTC7B SNP Missense_Mutation 14 91156023 G A 38 61 BRCA TCGA-A1-A0SQ GANC SNP Missense_Mutation 15 42619578 G A 41 97 BRCA TCGA-A1-A0SQ CGNL1 SNP Silent 15 57754042 T C 51 46 BRCA TCGA-A1-A0SQ TMEM132E SNP Silent 17 32963064 G A 38 42 BRCA TCGA-A1-A0SQ RFNG SNP Missense_Mutation 17 80008605 G A 38 90 BRCA TCGA-A1-A0SQ RASGRP4 SNP Silent 19 38910824 G A 39 22 BRCA TCGA-A1-A0SQ MAP4K1 SNP Silent 19 39092118 G A 41 64 BRCA TCGA-A1-A0SQ BCKDHA SNP Silent 19 41903744 G A 37 52 BRCA TCGA-A1-A0SQ PTPRH SNP Missense_Mutation 19 55707989 C G 22 59 BRCA TCGA-A1-A0SQ CCDC106 SNP Silent 19 56160842 C T 32 72 BRCA TCGA-A1-A0SQ KIF1A SNP Missense_Mutation 2 241684897 G A 42 97 BRCA TCGA-A1-A0SQ BMX SNP Missense_Mutation 23 15554529 G A 37 48 BRCA TCGA-A1-A0SQ DCAF8L1 SNP Missense_Mutation 23 27998516 G C 45 51 BRCA TCGA-A1-A0SQ C3orf30 SNP Missense_Mutation 3 118865802 G A 40 51 BRCA TCGA-A1-A0SQ MCCC1 INS Frame_Shift_Ins 3 182812366 - A 29 77 BRCA TCGA-A1-A0SQ METAP1 SNP Missense_Mutation 4 99966365 G T 41 98 BRCA TCGA-A1-A0SQ PIM1 SNP Silent 6 37139176 C T 17 80 BRCA TCGA-A1-A0SQ MUC12 SNP Missense_Mutation 7 100639913 C G 25 39 BRCA TCGA-A1-A0SQ XRCC2 SNP Missense_Mutation 7 152345989 G A 40 89 BRCA TCGA-A1-A0SQ SEMA3A SNP Missense_Mutation 7 83610743 G A 39 79 BRCA TCGA-A1-A0SQ RP1L1 SNP Nonsense_Mutation 8 10466300 G A 45 52 BRCA TCGA-A1-A0SQ ANK1 SNP Missense_Mutation 8 41551422 C T 19 86 BRCA TCGA-A1-A0SQ NTRK2 SNP Silent 9 87635261 C T 18 58 BRCA TCGA-A2-A04N CD55 DEL Frame_Shift_Del 1 207498015 A - 14 55 BRCA TCGA-A2-A04N DHX32 SNP Silent 10 127527669 A G 13 45 BRCA TCGA-A2-A04N MYO3A SNP Missense_Mutation 10 26409687 A G 7 79 BRCA TCGA-A2-A04N KIRREL3 SNP Silent 11 126294697 C T 28 81 BRCA TCGA-A2-A04N RAD9A SNP Nonsense_Mutation 11 67161199 T A 59 49 BRCA TCGA-A2-A04N RNFT2 SNP Missense_Mutation 12 117178862 C T 19 68 BRCA TCGA-A2-A04N OR4L1 SNP Missense_Mutation 14 20528495 G A 40 52 BRCA TCGA-A2-A04N VRTN SNP Missense_Mutation 14 74824516 C T 23 66 BRCA TCGA-A2-A04N EML5 SNP Missense_Mutation 14 89172755 T A 64 86 BRCA TCGA-A2-A04N TCF12 SNP Missense_Mutation 15 57554331 A C 5 71 BRCA TCGA-A2-A04N ANKRD34C SNP Missense_Mutation 15 79586096 C T 31 92 BRCA TCGA-A2-A04N UNC45B SNP Missense_Mutation 17 33496946 C T 31 78 BRCA TCGA-A2-A04N GDPD1 SNP Missense_Mutation 17 57334498 G A 41 95 BRCA TCGA-A2-A04N PIK3C3 SNP Missense_Mutation 18 39613908 C A 28 96 BRCA TCGA-A2-A04N MYO5B SNP Missense_Mutation 18 47402068 T G 63 55 BRCA TCGA-A2-A04N LAMA1 SNP Silent 18 7046346 G A 48 59 BRCA TCGA-A2-A04N ZNF791 SNP Missense_Mutation 19 12734520 G T 36 56 BRCA TCGA-A2-A04N OR10H1 SNP Missense_Mutation 19 15918231 G A 40 48 BRCA TCGA-A2-A04N ZNF461 SNP Silent 19 37129666 G A 38 53 BRCA TCGA-A2-A04N MUC16 SNP Missense_Mutation 19 9088087 G T 35 51 BRCA TCGA-A2-A04N SCN2A SNP Missense_Mutation 2 166201098 A C 2 92 BRCA TCGA-A2-A04N TTN SNP Silent 2 179640414 G T 45 64 BRCA TCGA-A2-A04N KANSL1L SNP Silent 2 211018779 C T 32 75 BRCA TCGA-A2-A04N PRKAG3 SNP Missense_Mutation 2 219688550 A G 11 76 BRCA TCGA-A2-A04N REG1B SNP Missense_Mutation 2 79314722 G A 37 51 BRCA TCGA-A2-A04N KIF16B SNP Splice_Site 20 16474996 C A 24 93 BRCA TCGA-A2-A04N ASXL1 SNP Nonsense_Mutation 20 31021535 C T 29 88 BRCA TCGA-A2-A04N PCNT SNP Missense_Mutation 21 47821574 C T 24 51 BRCA TCGA-A2-A04N MAGEE2 SNP Missense_Mutation 23 75004120 C G 32 55 BRCA TCGA-A2-A04N COL6A6 SNP Missense_Mutation 3 130292858 G T 34 24 BRCA TCGA-A2-A04N PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-A2-A04N ELP6 SNP Splice_site 3 47555027 C A 24 65 BRCA TCGA-A2-A04N SCLT1 SNP Missense_Mutation 4 129886386 T A 52 52 BRCA TCGA-A2-A04N FAM13A SNP Silent 4 89649699 A G 4 49 BRCA TCGA-A2-A04N MAP3K1 DEL Frame_Shift_Del 5 56168534 C - 32 80 BRCA TCGA-A2-A04N MAP3K1 DEL In_Frame_Del 5 56181812 GTT - 36 65 BRCA TCGA-A2-A04N MAP3K1 SNP Missense_Mutation 5 56183211 A G 4 86 BRCA TCGA-A2-A04N MAP3K1 SNP Missense_Mutation 5 56184105 G T 48 94 BRCA TCGA-A2-A04N ZSCAN12 SNP Missense_Mutation 6 28365880 C G 28 66 BRCA TCGA-A2-A04N CHN2 SNP Missense_Mutation 7 29535591 C A 20 63 BRCA TCGA-A2-A04N TSNARE1 SNP Missense_Mutation 8 143356158 C T 30 56 BRCA TCGA-A2-A04N WRN DEL In_Frame_Del 8 30945377 AAG - 1 59 BRCA TCGA-A2-A04N OR1J4 SNP Missense_Mutation 9 125281810 C T 23 85 BRCA TCGA-A2-A04P HIPK1 SNP Missense_Mutation 1 114510483 A G 4 72 BRCA TCGA-A2-A04P UBE2J2 SNP Missense_Mutation 1 1190626 G A 34 83 BRCA TCGA-A2-A04P SETDB1 SNP Missense_Mutation 1 150933074 G T 43 96 BRCA TCGA-A2-A04P FASLG SNP Missense_Mutation 1 172628648 C A 29 76 BRCA TCGA-A2-A04P CYB5R1 SNP Missense_Mutation 1 202935062 G C 41 94 BRCA TCGA-A2-A04P EIF4G3 DEL In_Frame_Del 1 21268078 TTTTGCATCTTCACTAAGGCAAGTTCT - 56 54 BRCA TCGA-A2-A04P RYR2 SNP Splice_site 1 237586392 G T 44 51 BRCA TCGA-A2-A04P GJA4 SNP Missense_Mutation 1 35260061 C G 24 74 BRCA TCGA-A2-A04P EIF2C4 SNP Missense_Mutation 1 36298080 C G 27 60 BRCA TCGA-A2-A04P HEYL SNP Nonsense_Mutation 1 40092514 G A 39 51 BRCA TCGA-A2-A04P NPHP4 SNP Silent 1 5926438 A T 1 49 BRCA TCGA-A2-A04P NOL9 SNP Silent 1 6593398 C G 17 53 BRCA TCGA-A2-A04P PPRC1 SNP Missense_Mutation 10 103907133 C T 17 58 BRCA TCGA-A2-A04P TDRD1 SNP Missense_Mutation 10 115964497 T C 57 66 BRCA TCGA-A2-A04P RPP38 SNP Missense_Mutation 10 15145558 T C 52 17 BRCA TCGA-A2-A04P PTCHD3 SNP Missense_Mutation 10 27702555 C T 19 58 BRCA TCGA-A2-A04P ARHGAP22 SNP Missense_Mutation 10 49658718 G C 41 53 BRCA TCGA-A2-A04P C10orf71 SNP Missense_Mutation 10 50532310 A G 9 50 BRCA TCGA-A2-A04P ERCC6 SNP Silent 10 50690883 C A 17 68 BRCA TCGA-A2-A04P GSTP1 SNP Silent 11 67353658 C G 25 51 BRCA TCGA-A2-A04P TAS2R31 SNP Missense_Mutation 12 11183563 T G 54 47 BRCA TCGA-A2-A04P RBM19 SNP Missense_Mutation 12 114296661 T C 50 53 BRCA TCGA-A2-A04P PTPRO SNP Missense_Mutation 12 15637127 G C 36 85 BRCA TCGA-A2-A04P SLCO1C1 SNP Missense_Mutation 12 20890110 G C 33 52 BRCA TCGA-A2-A04P PYROXD1 SNP Missense_Mutation 12 21621644 G C 33 83 BRCA TCGA-A2-A04P FGF6 SNP Missense_Mutation 12 4543446 G A 40 73 BRCA TCGA-A2-A04P BIN2 SNP Missense_Mutation 12 51696916 G A 47 50 BRCA TCGA-A2-A04P PDE1B SNP Silent 12 54962960 G T 43 67 BRCA TCGA-A2-A04P ERBB3 SNP Missense_Mutation 12 56495315 A C 14 52 BRCA TCGA-A2-A04P VWF SNP Silent 12 6078555 G A 37 41 BRCA TCGA-A2-A04P OTOGL SNP Missense_Mutation 12 80712472 C G 24 85 BRCA TCGA-A2-A04P N4BP2L2 SNP Silent 13 33018233 C T 26 40 BRCA TCGA-A2-A04P MAB21L1 SNP Silent 13 36050009 C T 21 100 BRCA TCGA-A2-A04P OR4L1 SNP Silent 14 20529103 A G 4 58 BRCA TCGA-A2-A04P ABHD4 SNP Silent 14 23078768 G A 39 33 BRCA TCGA-A2-A04P MTHFD1 SNP Missense_Mutation 14 64906860 C G 32 100 BRCA TCGA-A2-A04P SPTBN5 SNP Missense_Mutation 15 42185136 A C 3 89 BRCA TCGA-A2-A04P TTBK2 SNP Silent 15 43045173 T C 56 57 BRCA TCGA-A2-A04P DPP8 SNP Splice_Site 15 65799695 T A 53 81 BRCA TCGA-A2-A04P ITGA11 SNP Splice_Site 15 68599782 C A 28 87 BRCA TCGA-A2-A04P SALL1 SNP Missense_Mutation 16 51173426 A G 12 78 BRCA TCGA-A2-A04P VAC14 SNP Missense_Mutation 16 70796918 C T 28 51 BRCA TCGA-A2-A04P CNTNAP4 SNP Missense_Mutation 16 76587299 C A 22 55 BRCA TCGA-A2-A04P MYO18A SNP Missense_Mutation 17 27448654 G A 38 83 BRCA TCGA-A2-A04P DHX58 SNP Missense_Mutation 17 40259747 A T 7 88 BRCA TCGA-A2-A04P CEP95 SNP Missense_Mutation 17 62506293 C A 24 62 BRCA TCGA-A2-A04P TP53 DEL Frame_Shift_Del 17 7579364 C - 18 58 BRCA TCGA-A2-A04P RPTOR SNP Missense_Mutation 17 78867561 G C 34 98 BRCA TCGA-A2-A04P ENSG00000215512 SNP Missense_Mutation 18 15325936 G T 47 54 BRCA TCGA-A2-A04P EMILIN2 SNP Missense_Mutation 18 2890828 C A 26 97 BRCA TCGA-A2-A04P LOXHD1 SNP Missense_Mutation 18 44122705 C G 21 96 BRCA TCGA-A2-A04P GRIN3B SNP Missense_Mutation 19 1005266 C T 27 94 BRCA TCGA-A2-A04P OR7A10 DEL Frame_Shift_Del 19 14952332 AGGCCATCACGGTCAGA - 15 59 BRCA TCGA-A2-A04P PGLS SNP Splice_Site 19 17628661 T A 57 90 BRCA TCGA-A2-A04P LIPE SNP Silent 19 42911525 C G 29 54 BRCA TCGA-A2-A04P DUS3L SNP Missense_Mutation 19 5785618 A T 6 85 BRCA TCGA-A2-A04P PLEKHB2 SNP Missense_Mutation 2 131904268 C G 19 47 BRCA TCGA-A2-A04P TANC1 SNP Missense_Mutation 2 160035597 G A 48 100 BRCA TCGA-A2-A04P USP37 SNP Missense_Mutation 2 219411017 C G 29 64 BRCA TCGA-A2-A04P PSMD1 SNP Missense_Mutation 2 231927249 G A 39 88 BRCA TCGA-A2-A04P RBM44 SNP Missense_Mutation 2 238726909 G A 48 45 BRCA TCGA-A2-A04P ILKAP DEL Frame_Shift_Del 2 239079209 C - 19 96 BRCA TCGA-A2-A04P C2orf18 SNP Silent 2 26998354 C T 21 61 BRCA TCGA-A2-A04P SOS1 SNP Nonsense_Mutation 2 39281774 G C 45 74 BRCA TCGA-A2-A04P DNAH6 SNP Silent 2 84881840 T C 63 57 BRCA TCGA-A2-A04P C20orf132 SNP Missense_Mutation 20 35737007 T C 54 73 BRCA TCGA-A2-A04P C20orf132 SNP Splice_Site 20 35743575 C T 17 77 BRCA TCGA-A2-A04P CXADR SNP Silent 21 18933138 C G 30 50 BRCA TCGA-A2-A04P IL10RB SNP Missense_Mutation 21 34652083 G A 36 51 BRCA TCGA-A2-A04P KCNJ4 SNP Missense_Mutation 22 38823629 G T 44 99 BRCA TCGA-A2-A04P ATF4 SNP Missense_Mutation 22 39917510 C G 31 69 BRCA TCGA-A2-A04P PACSIN2 SNP Splice_site 22 43267475 C G 22 97 BRCA TCGA-A2-A04P SERPINA7 SNP Silent 23 105278253 T G 55 49 BRCA TCGA-A2-A04P PAK3 SNP Missense_Mutation 23 110459702 A C 10 76 BRCA TCGA-A2-A04P MAGEA1 SNP Missense_Mutation 23 152482175 A G 10 56 BRCA TCGA-A2-A04P ASB9 SNP Missense_Mutation 23 15267033 C T 18 51 BRCA TCGA-A2-A04P PHEX SNP Missense_Mutation 23 22237179 T C 57 85 BRCA TCGA-A2-A04P IL1RAPL1 SNP Missense_Mutation 23 29973934 G T 44 94 BRCA TCGA-A2-A04P AKAP4 SNP Missense_Mutation 23 49957298 A T 8 69 BRCA TCGA-A2-A04P SHROOM4 SNP Silent 23 50381257 C A 21 60 BRCA TCGA-A2-A04P CCRL1 SNP Missense_Mutation 3 132320043 A G 8 89 BRCA TCGA-A2-A04P KCNAB1 SNP Missense_Mutation 3 155838561 A T 7 61 BRCA TCGA-A2-A04P PIK3CA SNP Missense_Mutation 3 178916876 G A 37 97 BRCA TCGA-A2-A04P IQCF1 SNP Missense_Mutation 3 51928941 C A 17 48 BRCA TCGA-A2-A04P ROBO2 SNP Missense_Mutation 3 77651571 G T 34 74 BRCA TCGA-A2-A04P ADAD1 SNP Splice_site 4 123304955 T G 57 49 BRCA TCGA-A2-A04P UNC5C SNP Missense_Mutation 4 96166163 C G 20 59 BRCA TCGA-A2-A04P PDLIM4 SNP Missense_Mutation 5 131607861 A T 3 69 BRCA TCGA-A2-A04P PCDHA13 SNP Missense_Mutation 5 140263402 G A 44 55 BRCA TCGA-A2-A04P PCDHGB4 SNP Missense_Mutation 5 140769441 G A 37 82 BRCA TCGA-A2-A04P RBM27 SNP Missense_Mutation 5 145610352 C A 20 94 BRCA TCGA-A2-A04P HTR1A DEL Frame_Shift_Del 5 63257274 G - 47 68 BRCA TCGA-A2-A04P HTR1A SNP Missense_Mutation 5 63257275 G A 43 96 BRCA TCGA-A2-A04P BVES SNP Missense_Mutation 6 105573408 C T 29 84 BRCA TCGA-A2-A04P ERVFRD-1 SNP Silent 6 11104836 A G 11 52 BRCA TCGA-A2-A04P WTAP SNP Missense_Mutation 6 160164703 A C 12 93 BRCA TCGA-A2-A04P SRPK1 SNP Missense_Mutation 6 35810362 C A 18 97 BRCA TCGA-A2-A04P FARS2 SNP Missense_Mutation 6 5431360 G C 41 95 BRCA TCGA-A2-A04P UFL1 SNP Missense_Mutation 6 96997376 A G 4 67 BRCA TCGA-A2-A04P KLHL32 SNP Missense_Mutation 6 97533213 G T 47 100 BRCA TCGA-A2-A04P MUC12 SNP Missense_Mutation 7 100635585 C T 21 48 BRCA TCGA-A2-A04P OR9A2 SNP Missense_Mutation 7 142723943 G C 33 69 BRCA TCGA-A2-A04P INTS1 SNP Missense_Mutation 7 1535175 G A 39 71 BRCA TCGA-A2-A04P PDE1C SNP Silent 7 31887635 C T 25 51 BRCA TCGA-A2-A04P OGDH SNP Missense_Mutation 7 44734067 G A 48 100 BRCA TCGA-A2-A04P GRM3 SNP Missense_Mutation 7 86468742 C G 18 77 BRCA TCGA-A2-A04P AKAP9 SNP Missense_Mutation 7 91690649 C G 24 74 BRCA TCGA-A2-A04P FAM135B SNP Missense_Mutation 8 139263115 C A 25 72 BRCA TCGA-A2-A04P TEX15 SNP Missense_Mutation 8 30702239 C G 20 39 BRCA TCGA-A2-A04P HOOK3 SNP Missense_Mutation 8 42819469 G C 41 85 BRCA TCGA-A2-A04P HGSNAT SNP Missense_Mutation 8 43052147 C G 29 48 BRCA TCGA-A2-A04P CNGB3 SNP Splice_site 8 87751884 T A 56 69 BRCA TCGA-A2-A04P TEX10 SNP Silent 9 103065953 G A 47 52 BRCA TCGA-A2-A04P FKBP15 DEL In_Frame_Del 9 115931997 CCTGAGGAGGCAACGGGACAGCTT - 26 57 BRCA TCGA-A2-A04P SEMA4D SNP Nonsense_Mutation 9 92017794 G A 46 68 BRCA TCGA-A2-A04Q ARHGEF10L SNP Silent 1 17964411 C A 32 60 BRCA TCGA-A2-A04Q DNAH14 INS Splice_Site 1 225328430 - AG 49 33 BRCA TCGA-A2-A04Q SEC31B SNP Missense_Mutation 10 102247512 C T 31 62 BRCA TCGA-A2-A04Q ARID2 SNP Missense_Mutation 12 46230605 G A 39 100 BRCA TCGA-A2-A04Q NF1 SNP Nonsense_Mutation 17 29548939 G A 43 98 BRCA TCGA-A2-A04Q TEKT1 SNP Silent 17 6733605 T G 56 56 BRCA TCGA-A2-A04Q GPI INS Frame_Shift_Ins 19 34856187 - G 23 53 BRCA TCGA-A2-A04Q ARHGEF1 SNP Splice_site 19 42396193 C T 27 78 BRCA TCGA-A2-A04Q NF1P6 SNP Silent 22 16346045 T C 64 50 BRCA TCGA-A2-A04Q CLSTN2 SNP Silent 3 140251267 C T 19 50 BRCA TCGA-A2-A04Q MST1 DEL Frame_Shift_Del 3 49723112 T - 60 86 BRCA TCGA-A2-A04Q CASP2 SNP Missense_Mutation 7 142985571 C T 32 50 BRCA TCGA-A2-A04Q HECW1 SNP Silent 7 43590145 C T 27 37 BRCA TCGA-A2-A04R ECM1 SNP Missense_Mutation 1 150484230 C A 28 71 BRCA TCGA-A2-A04R LCE2A DEL Frame_Shift_Del 1 152671581 C - 26 46 BRCA TCGA-A2-A04R LCE2A SNP Missense_Mutation 1 152671582 C G 24 49 BRCA TCGA-A2-A04R ZNF238 SNP Silent 1 244218516 C T 27 50 BRCA TCGA-A2-A04R CSMD2 SNP Missense_Mutation 1 34068091 G T 41 65 BRCA TCGA-A2-A04R C10orf88 SNP Missense_Mutation 10 124708257 G T 35 69 BRCA TCGA-A2-A04R TUBGCP2 SNP Missense_Mutation 10 135113545 T C 57 51 BRCA TCGA-A2-A04R FAM107B SNP Missense_Mutation 10 14816305 C A 28 53 BRCA TCGA-A2-A04R MASTL SNP Missense_Mutation 10 27454445 A T 16 52 BRCA TCGA-A2-A04R FUT11 SNP Missense_Mutation 10 75532267 C A 19 62 BRCA TCGA-A2-A04R LRIT1 SNP Silent 10 85993929 G A 43 52 BRCA TCGA-A2-A04R EXPH5 SNP Missense_Mutation 11 108381259 A T 2 49 BRCA TCGA-A2-A04R NPAS4 SNP Missense_Mutation 11 66191919 C G 22 59 BRCA TCGA-A2-A04R ENSG00000179821 SNP Missense_Mutation 12 105370677 C T 27 51 BRCA TCGA-A2-A04R IFLTD1 SNP Missense_Mutation 12 25679085 T G 56 41 BRCA TCGA-A2-A04R TM7SF3 SNP Nonsense_Mutation 12 27127095 C A 32 98 BRCA TCGA-A2-A04R ACVR1B SNP Missense_Mutation 12 52374976 C G 17 71 BRCA TCGA-A2-A04R NALCN SNP Silent 13 101712242 C T 27 37 BRCA TCGA-A2-A04R FAM155A SNP Silent 13 108518417 C T 19 56 BRCA TCGA-A2-A04R TRAF3 SNP Splice_Site 14 103336784 G T 44 98 BRCA TCGA-A2-A04R OR11H4 SNP Missense_Mutation 14 20711110 G T 34 52 BRCA TCGA-A2-A04R OR10G2 SNP Missense_Mutation 14 22102870 C G 28 60 BRCA TCGA-A2-A04R NPAS3 SNP Missense_Mutation 14 34269056 G A 37 99 BRCA TCGA-A2-A04R FRMD6 SNP Splice_site 14 52186774 G T 33 53 BRCA TCGA-A2-A04R FMN1 SNP Missense_Mutation 15 33359400 C T 27 50 BRCA TCGA-A2-A04R ZNF592 SNP Missense_Mutation 15 85325940 C A 24 95 BRCA TCGA-A2-A04R SYNM SNP Missense_Mutation 15 99645494 G A 39 65 BRCA TCGA-A2-A04R GPR179 SNP Nonsense_Mutation 17 36485058 C T 21 62 BRCA TCGA-A2-A04R MPO SNP Missense_Mutation 17 56348081 C T 23 51 BRCA TCGA-A2-A04R B4GALT6 SNP Silent 18 29211065 G A 34 57 BRCA TCGA-A2-A04R RTTN SNP Missense_Mutation 18 67721498 A G 15 75 BRCA TCGA-A2-A04R COL5A3 SNP Missense_Mutation 19 10097018 C A 24 52 BRCA TCGA-A2-A04R USE1 SNP Missense_Mutation 19 17330504 G A 40 96 BRCA TCGA-A2-A04R COMP SNP Silent 19 18897405 G A 48 58 BRCA TCGA-A2-A04R VSTM2B SNP Missense_Mutation 19 30054804 C A 28 62 BRCA TCGA-A2-A04R ZNF571 SNP Missense_Mutation 19 38055665 C A 32 59 BRCA TCGA-A2-A04R MEGF8 SNP Missense_Mutation 19 42861080 A T 6 50 BRCA TCGA-A2-A04R ZNF229 SNP Missense_Mutation 19 44933974 G A 37 51 BRCA TCGA-A2-A04R SIGLEC12 SNP Silent 19 52004714 G T 39 50 BRCA TCGA-A2-A04R FBN3 SNP Missense_Mutation 19 8171110 G C 40 50 BRCA TCGA-A2-A04R ZNF562 SNP Missense_Mutation 19 9768710 C G 32 62 BRCA TCGA-A2-A04R GCC2 SNP Missense_Mutation 2 109100752 C G 24 55 BRCA TCGA-A2-A04R LRP2 SNP Silent 2 170177381 C T 27 44 BRCA TCGA-A2-A04R HNRNPA3 SNP Nonsense_Mutation 2 178080348 C T 19 68 BRCA TCGA-A2-A04R TTN SNP Missense_Mutation 2 179457975 C A 18 100 BRCA TCGA-A2-A04R HECW2 SNP Missense_Mutation 2 197143359 T C 59 60 BRCA TCGA-A2-A04R E2F1 SNP Missense_Mutation 20 32267630 T C 49 88 BRCA TCGA-A2-A04R GTPBP5 SNP Missense_Mutation 20 60770921 A C 3 57 BRCA TCGA-A2-A04R OSBPL2 SNP Missense_Mutation 20 60868880 C A 23 50 BRCA TCGA-A2-A04R KRTAP11-1 SNP Silent 21 32253424 G C 33 48 BRCA TCGA-A2-A04R COL18A1 DEL Frame_Shift_Del 21 46888640 GGAGCCTGGCGCC - 47 52 BRCA TCGA-A2-A04R PEX26 SNP Missense_Mutation 22 18562697 G A 47 87 BRCA TCGA-A2-A04R CELSR1 DEL Splice_Site 22 46759085 CTGATGGTTCAAATTGAAGTTTCATTA - 24 58 BRCA TCGA-A2-A04R DUSP9 SNP Missense_Mutation 23 152915602 T A 56 73 BRCA TCGA-A2-A04R PTCHD1 SNP Missense_Mutation 23 23411288 C A 20 56 BRCA TCGA-A2-A04R IL1RAPL1 SNP Missense_Mutation 23 29935650 G T 47 96 BRCA TCGA-A2-A04R CASK SNP Missense_Mutation 23 41413141 C G 29 97 BRCA TCGA-A2-A04R EFNB1 SNP Missense_Mutation 23 68060252 C T 19 92 BRCA TCGA-A2-A04R EDA SNP Missense_Mutation 23 69247730 C A 18 78 BRCA TCGA-A2-A04R IQCB1 SNP Missense_Mutation 3 121507139 G C 45 87 BRCA TCGA-A2-A04R SCN11A SNP Missense_Mutation 3 38991797 G T 45 73 BRCA TCGA-A2-A04R RNF123 SNP Missense_Mutation 3 49751012 T C 59 87 BRCA TCGA-A2-A04R CACNA1D SNP Missense_Mutation 3 53769505 T A 50 92 BRCA TCGA-A2-A04R CACNA2D3 SNP Silent 3 54676226 C T 24 52 BRCA TCGA-A2-A04R DNAH12 SNP Splice_site 3 57456362 T A 49 92 BRCA TCGA-A2-A04R ODZ3 SNP Silent 4 183594306 C A 32 85 BRCA TCGA-A2-A04R PTTG2 SNP Silent 4 37962151 C T 29 48 BRCA TCGA-A2-A04R USP46 SNP Silent 4 53468079 A G 8 43 BRCA TCGA-A2-A04R POLR2B SNP Silent 4 57888327 C T 32 72 BRCA TCGA-A2-A04R RAPGEF6 SNP Splice_site 5 130785738 T G 62 93 BRCA TCGA-A2-A04R SPRY4 SNP Silent 5 141694299 T A 59 23 BRCA TCGA-A2-A04R FAM114A2 SNP Missense_Mutation 5 153374519 G A 46 78 BRCA TCGA-A2-A04R DOK3 SNP Missense_Mutation 5 176931757 A T 9 71 BRCA TCGA-A2-A04R HIST1H2AL SNP Missense_Mutation 6 27833360 G C 33 96 BRCA TCGA-A2-A04R POLH SNP Splice_Site 6 43578461 G T 44 96 BRCA TCGA-A2-A04R KCND2 SNP Missense_Mutation 7 119915612 G T 42 100 BRCA TCGA-A2-A04R GIMAP6 SNP Silent 7 150325167 C G 21 51 BRCA TCGA-A2-A04R GIMAP6 SNP Silent 7 150325173 G T 34 48 BRCA TCGA-A2-A04R NOS3 SNP Missense_Mutation 7 150698415 G A 33 94 BRCA TCGA-A2-A04R GRM3 SNP Missense_Mutation 7 86415883 G C 40 87 BRCA TCGA-A2-A04R ZFPM2 SNP Missense_Mutation 8 106813723 G T 36 57 BRCA TCGA-A2-A04R FAM167A SNP Missense_Mutation 8 11301703 T A 54 51 BRCA TCGA-A2-A04R FAM135B SNP Splice_Site 8 139255184 C A 18 93 BRCA TCGA-A2-A04R PLAT SNP Missense_Mutation 8 42033530 C G 19 51 BRCA TCGA-A2-A04R NR6A1 SNP Missense_Mutation 9 127316626 C G 32 84 BRCA TCGA-A2-A04R ADAMTSL1 DNP Nonsense_Mutation 9 18817201 GG CT 35 45 BRCA TCGA-A2-A04R LOC643827 SNP Silent 9 65595103 C A 23 54 BRCA TCGA-A2-A04U MTOR SNP Silent 1 11217313 C T 20 62 BRCA TCGA-A2-A04U ENSA SNP Missense_Mutation 1 150601942 G T 41 85 BRCA TCGA-A2-A04U KIF21B SNP Missense_Mutation 1 200967640 A C 12 91 BRCA TCGA-A2-A04U GNPAT SNP Missense_Mutation 1 231406515 G A 46 60 BRCA TCGA-A2-A04U HNRNPU SNP Missense_Mutation 1 245025803 T A 56 60 BRCA TCGA-A2-A04U USP1 SNP Missense_Mutation 1 62914231 T A 55 91 BRCA TCGA-A2-A04U CASP1 SNP Missense_Mutation 11 104905093 T C 54 74 BRCA TCGA-A2-A04U FNBP4 SNP Missense_Mutation 11 47753019 G C 48 60 BRCA TCGA-A2-A04U SCUBE2 SNP Silent 11 9074689 G A 40 54 BRCA TCGA-A2-A04U PRDM4 SNP Missense_Mutation 12 108145695 C G 30 98 BRCA TCGA-A2-A04U SLC2A13 SNP Missense_Mutation 12 40422247 C G 29 98 BRCA TCGA-A2-A04U BDKRB1 SNP Missense_Mutation 14 96730708 G A 37 57 BRCA TCGA-A2-A04U FMN1 SNP Missense_Mutation 15 33261324 T C 51 48 BRCA TCGA-A2-A04U CILP SNP Missense_Mutation 15 65490491 T A 56 54 BRCA TCGA-A2-A04U CHD2 SNP Silent 15 93510696 A G 2 48 BRCA TCGA-A2-A04U ABCC12 SNP Silent 16 48172233 T C 55 58 BRCA TCGA-A2-A04U CNOT1 SNP Silent 16 58564183 C T 21 68 BRCA TCGA-A2-A04U SHISA6 SNP Missense_Mutation 17 11461131 G A 38 63 BRCA TCGA-A2-A04U BZRAP1 SNP Missense_Mutation 17 56403701 G A 38 73 BRCA TCGA-A2-A04U TP53 DEL Frame_Shift_Del 17 7579364 C - 18 58 BRCA TCGA-A2-A04U TP53 SNP Missense_Mutation 17 7579367 T C 57 64 BRCA TCGA-A2-A04U LAMA3 SNP Missense_Mutation 18 21530014 C T 21 62 BRCA TCGA-A2-A04U TCEB3B SNP Missense_Mutation 18 44560555 C T 19 48 BRCA TCGA-A2-A04U NBAS SNP Missense_Mutation 2 15372613 C A 21 54 BRCA TCGA-A2-A04U NUP35 SNP Missense_Mutation 2 184022174 T G 64 86 BRCA TCGA-A2-A04U CCDC108 SNP Missense_Mutation 2 219894866 C A 25 71 BRCA TCGA-A2-A04U TCF7L1 SNP Silent 2 85361198 C G 23 53 BRCA TCGA-A2-A04U ADAMTS5 SNP Missense_Mutation 21 28315764 T A 50 89 BRCA TCGA-A2-A04U ZDHHC8 SNP Silent 22 20127347 C T 31 42 BRCA TCGA-A2-A04U TNRC6B SNP Missense_Mutation 22 40661106 A T 12 71 BRCA TCGA-A2-A04U MAGEB6 SNP Missense_Mutation 23 26213143 G C 38 52 BRCA TCGA-A2-A04U MXRA5 SNP Silent 23 3261749 C T 19 27 BRCA TCGA-A2-A04U CXorf22 SNP Missense_Mutation 23 35984770 A T 12 53 BRCA TCGA-A2-A04U GPR174 SNP Missense_Mutation 23 78426996 T A 49 49 BRCA TCGA-A2-A04U ATP2B2 DEL Frame_Shift_Del 3 10417218 GCAC - 46 97 BRCA TCGA-A2-A04U ATP2B2 DEL Frame_Shift_Del 3 10417224 A - 15 89 BRCA TCGA-A2-A04U ATP2B2 DEL Frame_Shift_Del 3 10417227 CGGG - 19 66 BRCA TCGA-A2-A04U ATP2B2 DEL Frame_Shift_Del 3 10417234 GC - 46 68 BRCA TCGA-A2-A04U MUC4 SNP Silent 3 195513060 G A 40 46 BRCA TCGA-A2-A04U GAR1 SNP Missense_Mutation 4 110737351 T G 56 59 BRCA TCGA-A2-A04U ZFYVE28 SNP Silent 4 2321938 G A 39 44 BRCA TCGA-A2-A04U PCDHGB7 SNP Missense_Mutation 5 140799111 T G 59 90 BRCA TCGA-A2-A04U ENSG00000227087 SNP Silent 5 79627800 C T 19 39 BRCA TCGA-A2-A04U BACH2 SNP Missense_Mutation 6 90660232 G C 40 37 BRCA TCGA-A2-A04U MOGAT3 SNP Missense_Mutation 7 100841573 G C 45 51 BRCA TCGA-A2-A04U SEPT14 SNP Missense_Mutation 7 55929654 T C 57 50 BRCA TCGA-A2-A04U ABCB1 SNP Missense_Mutation 7 87145943 C T 22 100 BRCA TCGA-A2-A04U FZD1 SNP Missense_Mutation 7 90895264 T A 56 89 BRCA TCGA-A2-A04U CPSF4 SNP Missense_Mutation 7 99045885 A C 14 91 BRCA TCGA-A2-A04U STRBP SNP Missense_Mutation 9 125898790 C T 32 100 BRCA TCGA-A2-A04U LMX1B SNP Missense_Mutation 9 129458599 G A 37 98 BRCA TCGA-A2-A04U EHMT1 SNP Missense_Mutation 9 140676797 T G 55 90 BRCA TCGA-A2-A04U VLDLR SNP Missense_Mutation 9 2643403 G A 40 79 BRCA TCGA-A2-A04U CREB3 SNP Missense_Mutation 9 35732815 C A 24 57 BRCA TCGA-A2-A04U FRMPD1 SNP Silent 9 37708487 C T 31 30 BRCA TCGA-A2-A04V SV2A SNP Missense_Mutation 1 149879682 C T 20 51 BRCA TCGA-A2-A04V UBAP2L SNP Silent 1 154227320 C T 29 73 BRCA TCGA-A2-A04V KHDRBS1 DEL In_Frame_Del 1 32495940 GAG - 45 81 BRCA TCGA-A2-A04V MRGPRX3 SNP Missense_Mutation 11 18158850 C T 19 47 BRCA TCGA-A2-A04V OR5L1 SNP Missense_Mutation 11 55579499 G T 36 47 BRCA TCGA-A2-A04V ODZ4 SNP Missense_Mutation 11 78498080 G T 44 71 BRCA TCGA-A2-A04V SPTB SNP Missense_Mutation 14 65266520 C T 19 74 BRCA TCGA-A2-A04V ZNF843 SNP Missense_Mutation 16 31447564 C T 23 48 BRCA TCGA-A2-A04V CHD9 SNP Missense_Mutation 16 53190227 T G 62 57 BRCA TCGA-A2-A04V ZDHHC1 SNP Missense_Mutation 16 67432541 A C 11 75 BRCA TCGA-A2-A04V KANSL1 DEL Frame_Shift_Del 17 44110510 CA - 29 85 BRCA TCGA-A2-A04V MIF4GD DEL Frame_Shift_Del 17 73264205 AC - 2 88 BRCA TCGA-A2-A04V APLP1 SNP Silent 19 36365645 G A 39 52 BRCA TCGA-A2-A04V GRIK5 SNP Missense_Mutation 19 42566998 A T 12 91 BRCA TCGA-A2-A04V ZXDA SNP Silent 23 57935544 C A 29 49 BRCA TCGA-A2-A04V PIK3CA SNP Splice_site 3 178917478 G A 44 99 BRCA TCGA-A2-A04V TAPT1 SNP Silent 4 16193020 G A 39 46 BRCA TCGA-A2-A04V HEATR7B2 SNP Silent 5 41058282 G A 40 44 BRCA TCGA-A2-A04V ACTBL2 SNP Missense_Mutation 5 56777892 C G 32 94 BRCA TCGA-A2-A04V TRMT12 SNP Silent 8 125463552 T C 55 43 BRCA TCGA-A2-A04V PLEKHA2 INS Frame_Shift_Ins 8 38809720 - C 58 50 BRCA TCGA-A2-A04V TMEM246 SNP Missense_Mutation 9 104238634 G T 44 57 BRCA TCGA-A2-A04V FANCC SNP Missense_Mutation 9 98011555 C A 32 53 BRCA TCGA-A2-A04W THBS3 SNP Silent 1 155167681 G C 34 57 BRCA TCGA-A2-A04W ABL2 SNP Missense_Mutation 1 179095520 C A 32 95 BRCA TCGA-A2-A04W C1orf222 SNP Missense_Mutation 1 1900265 C T 29 57 BRCA TCGA-A2-A04W CR1 SNP Missense_Mutation 1 207793269 G A 41 49 BRCA TCGA-A2-A04W USH2A SNP Missense_Mutation 1 216246562 T C 55 77 BRCA TCGA-A2-A04W USH2A SNP Silent 1 216498908 G A 45 50 BRCA TCGA-A2-A04W RYR2 SNP Missense_Mutation 1 237897015 G A 41 98 BRCA TCGA-A2-A04W EPB41 SNP Missense_Mutation 1 29344900 C G 23 85 BRCA TCGA-A2-A04W LPPR5 SNP Missense_Mutation 1 99358642 C T 27 84 BRCA TCGA-A2-A04W TRIM8 SNP Missense_Mutation 10 104416924 C G 30 97 BRCA TCGA-A2-A04W GTPBP4 SNP Silent 10 1046775 C G 32 63 BRCA TCGA-A2-A04W ARMC4 SNP Missense_Mutation 10 28273951 G A 45 61 BRCA TCGA-A2-A04W VSTM4 SNP Splice_site 10 50294067 G C 45 54 BRCA TCGA-A2-A04W EGR2 SNP Missense_Mutation 10 64573184 C T 31 97 BRCA TCGA-A2-A04W MMS19 SNP Nonsense_Mutation 10 99222427 G T 45 78 BRCA TCGA-A2-A04W NPAT SNP Missense_Mutation 11 108047018 C T 29 74 BRCA TCGA-A2-A04W OR10G4 SNP Missense_Mutation 11 123887198 C A 25 53 BRCA TCGA-A2-A04W OR52N5 SNP Missense_Mutation 11 5799262 G C 45 62 BRCA TCGA-A2-A04W ACER3 SNP Splice_site 11 76726161 G C 35 83 BRCA TCGA-A2-A04W MYBPC1 SNP Missense_Mutation 12 102040663 G C 33 82 BRCA TCGA-A2-A04W GNPTAB SNP Nonsense_Mutation 12 102158936 G A 37 77 BRCA TCGA-A2-A04W TAS2R9 SNP Missense_Mutation 12 10962482 C T 32 57 BRCA TCGA-A2-A04W ATXN2 SNP Missense_Mutation 12 111991992 C T 29 92 BRCA TCGA-A2-A04W SBNO1 SNP Silent 12 123795660 C G 29 52 BRCA TCGA-A2-A04W NACA SNP Missense_Mutation 12 57115051 C G 30 50 BRCA TCGA-A2-A04W CHD4 SNP Nonsense_Mutation 12 6688060 C A 30 74 BRCA TCGA-A2-A04W PTPRQ SNP Missense_Mutation 12 81013271 A G 12 83 BRCA TCGA-A2-A04W NUFIP1 SNP Missense_Mutation 13 45540046 C G 29 75 BRCA TCGA-A2-A04W LMO7 SNP Missense_Mutation 13 76430698 C T 29 81 BRCA TCGA-A2-A04W C15orf55 SNP Missense_Mutation 15 34640323 C T 21 60 BRCA TCGA-A2-A04W CASC5 SNP Missense_Mutation 15 40914718 G A 45 51 BRCA TCGA-A2-A04W TMC5 DEL Frame_Shift_Del 16 19501758 CT - 24 62 BRCA TCGA-A2-A04W EDC4 SNP Silent 16 67913012 C A 23 31 BRCA TCGA-A2-A04W CDH15 SNP Missense_Mutation 16 89254650 G A 38 57 BRCA TCGA-A2-A04W PLXDC1 SNP Missense_Mutation 17 37263689 C T 29 69 BRCA TCGA-A2-A04W KIF1C SNP Silent 17 4906086 C T 31 48 BRCA TCGA-A2-A04W TP53 SNP Missense_Mutation 17 7577124 C T 18 81 BRCA TCGA-A2-A04W TBCD SNP Missense_Mutation 17 80767627 G A 45 88 BRCA TCGA-A2-A04W TTC39C SNP Silent 18 21712496 C T 30 64 BRCA TCGA-A2-A04W KCTD1 SNP Missense_Mutation 18 24035810 C G 30 99 BRCA TCGA-A2-A04W LOXHD1 SNP Silent 18 44104553 C T 22 53 BRCA TCGA-A2-A04W YES1 SNP Missense_Mutation 18 756691 G A 45 72 BRCA TCGA-A2-A04W DDX49 SNP Missense_Mutation 19 19035754 C T 32 73 BRCA TCGA-A2-A04W ZNF296 SNP Missense_Mutation 19 45574867 C T 31 50 BRCA TCGA-A2-A04W IGLON5 SNP Nonsense_Mutation 19 51831946 C G 29 75 BRCA TCGA-A2-A04W ZNF808 SNP Missense_Mutation 19 53057385 A G 13 58 BRCA TCGA-A2-A04W NLRP13 SNP Nonsense_Mutation 19 56423843 G C 45 48 BRCA TCGA-A2-A04W NLRP13 SNP Missense_Mutation 19 56424232 G C 45 45 BRCA TCGA-A2-A04W ZNF667 SNP Nonsense_Mutation 19 56953658 G A 45 50 BRCA TCGA-A2-A04W ZNF772 SNP Missense_Mutation 19 57984669 C A 30 54 BRCA TCGA-A2-A04W ASNSD1 SNP Missense_Mutation 2 190535312 C G 32 55 BRCA TCGA-A2-A04W CRYGC SNP Nonsense_Mutation 2 208993007 G A 47 59 BRCA TCGA-A2-A04W PTH2R SNP Missense_Mutation 2 209302289 G A 41 94 BRCA TCGA-A2-A04W CTDSP1 SNP Missense_Mutation 2 219269049 G C 45 97 BRCA TCGA-A2-A04W CAD SNP Missense_Mutation 2 27449820 G A 45 94 BRCA TCGA-A2-A04W SRBD1 SNP Silent 2 45789854 C T 23 50 BRCA TCGA-A2-A04W STON1-GTF2A1L SNP Missense_Mutation 2 48808551 C G 32 71 BRCA TCGA-A2-A04W DYSF SNP Splice_Site 2 71871094 G A 35 99 BRCA TCGA-A2-A04W CNGA3 SNP Silent 2 99013187 G A 33 61 BRCA TCGA-A2-A04W OPRL1 SNP Missense_Mutation 20 62729457 C G 32 99 BRCA TCGA-A2-A04W C21orf91 SNP Missense_Mutation 21 19190578 C A 17 67 BRCA TCGA-A2-A04W SOD1 SNP Missense_Mutation 21 33039646 C G 32 49 BRCA TCGA-A2-A04W ISX SNP Splice_Site 22 35480375 G C 33 93 BRCA TCGA-A2-A04W ZIC3 SNP Missense_Mutation 23 136652162 C G 32 72 BRCA TCGA-A2-A04W GABRQ SNP Silent 23 151815558 C T 31 38 BRCA TCGA-A2-A04W DCAF8L2 SNP Silent 23 27765792 G A 33 55 BRCA TCGA-A2-A04W IL1RAPL1 SNP Missense_Mutation 23 29301288 C T 23 60 BRCA TCGA-A2-A04W FAM47A SNP Silent 23 34150228 G A 40 46 BRCA TCGA-A2-A04W KIAA2022 SNP Missense_Mutation 23 73963037 G A 34 73 BRCA TCGA-A2-A04W TRIM42 SNP Missense_Mutation 3 140401809 G A 37 54 BRCA TCGA-A2-A04W ATR SNP Missense_Mutation 3 142172007 G A 38 68 BRCA TCGA-A2-A04W PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A2-A04W MUC4 SNP Silent 3 195490502 G A 37 49 BRCA TCGA-A2-A04W ZDHHC3 SNP Missense_Mutation 3 44959580 T A 55 53 BRCA TCGA-A2-A04W FAT4 SNP Missense_Mutation 4 126412418 C G 32 81 BRCA TCGA-A2-A04W GK3P SNP Missense_Mutation 4 166200610 G C 33 75 BRCA TCGA-A2-A04W HTT SNP Missense_Mutation 4 3224137 G A 45 100 BRCA TCGA-A2-A04W SPINK2 SNP Missense_Mutation 4 57677909 C G 17 68 BRCA TCGA-A2-A04W TMPRSS11E SNP Missense_Mutation 4 69334622 C A 21 50 BRCA TCGA-A2-A04W GRID2 SNP Missense_Mutation 4 94031970 G A 33 98 BRCA TCGA-A2-A04W UNC5C SNP Missense_Mutation 4 96123917 C T 20 87 BRCA TCGA-A2-A04W DNAH5 SNP Silent 5 13708337 G A 45 57 BRCA TCGA-A2-A04W PCDHA7 SNP Missense_Mutation 5 140214152 C T 27 66 BRCA TCGA-A2-A04W PCDHB7 SNP Missense_Mutation 5 140552525 G A 41 80 BRCA TCGA-A2-A04W PCDHGB7 SNP Missense_Mutation 5 140798033 G A 33 100 BRCA TCGA-A2-A04W ATP10B SNP Missense_Mutation 5 160067594 C G 29 99 BRCA TCGA-A2-A04W WWC1 SNP Missense_Mutation 5 167855767 G A 46 59 BRCA TCGA-A2-A04W ULBP3 SNP Missense_Mutation 6 150387233 C G 29 53 BRCA TCGA-A2-A04W HIST1H2AK SNP Missense_Mutation 6 27805901 C T 31 81 BRCA TCGA-A2-A04W BAI3 SNP Missense_Mutation 6 70070933 G C 46 53 BRCA TCGA-A2-A04W MDN1 SNP Missense_Mutation 6 90371881 C G 32 52 BRCA TCGA-A2-A04W MUC17 SNP Missense_Mutation 7 100685492 C T 30 37 BRCA TCGA-A2-A04W SMO SNP Silent 7 128850818 G A 33 55 BRCA TCGA-A2-A04W CCT8L1 SNP Nonsense_Mutation 7 152144042 G A 47 74 BRCA TCGA-A2-A04W POU6F2 SNP Silent 7 39503850 G C 45 78 BRCA TCGA-A2-A04W TNRC18 SNP Silent 7 5399197 C T 29 57 BRCA TCGA-A2-A04W SEMA3C SNP Nonsense_Mutation 7 80418802 C A 30 88 BRCA TCGA-A2-A04W SEMA3E SNP Silent 7 83119463 G A 45 59 BRCA TCGA-A2-A04W SEMA3A SNP Missense_Mutation 7 83634727 G C 45 84 BRCA TCGA-A2-A04W RGS22 SNP Missense_Mutation 8 101092487 G C 33 61 BRCA TCGA-A2-A04W WDR67 SNP Silent 8 124132400 C T 32 80 BRCA TCGA-A2-A04W TG SNP Missense_Mutation 8 133945871 G T 45 76 BRCA TCGA-A2-A04W PLEC SNP Missense_Mutation 8 145001160 C G 32 52 BRCA TCGA-A2-A04W GINS4 SNP Silent 8 41397268 G A 38 45 BRCA TCGA-A2-A04W DNAJC25-GNG10 SNP Missense_Mutation 9 114429136 G C 33 71 BRCA TCGA-A2-A04W UBAC1 SNP Silent 9 138845595 G C 41 57 BRCA TCGA-A2-A04W SLC34A3 SNP Nonsense_Mutation 9 140126583 C T 29 54 BRCA TCGA-A2-A04W FREM1 SNP Silent 9 14868949 C T 31 46 BRCA TCGA-A2-A04W TAF1L SNP Missense_Mutation 9 32634886 A G 5 71 BRCA TCGA-A2-A04X UBE2Q1 DEL Frame_Shift_Del 1 154528347 CTTT - 24 73 BRCA TCGA-A2-A04X ITGB1 SNP Silent 10 33217185 T C 59 41 BRCA TCGA-A2-A04X WIF1 SNP Missense_Mutation 12 65514331 C T 29 93 BRCA TCGA-A2-A04X EEA1 SNP Missense_Mutation 12 93226389 C G 32 94 BRCA TCGA-A2-A04X CYSLTR2 SNP Missense_Mutation 13 49281015 G A 42 46 BRCA TCGA-A2-A04X IPO4 SNP Missense_Mutation 14 24656970 G A 45 63 BRCA TCGA-A2-A04X FANCM DEL In_Frame_Del 14 45658083 GAA - 45 69 BRCA TCGA-A2-A04X DNAH3 SNP Missense_Mutation 16 20974834 C T 30 70 BRCA TCGA-A2-A04X ZNF213 SNP Silent 16 3191255 C T 31 48 BRCA TCGA-A2-A04X SARM1 SNP Nonsense_Mutation 17 26723195 G T 41 84 BRCA TCGA-A2-A04X VPS53 SNP Silent 17 559191 C T 29 46 BRCA TCGA-A2-A04X DNAH17 SNP Missense_Mutation 17 76556902 C A 30 78 BRCA TCGA-A2-A04X GTPBP3 SNP Missense_Mutation 19 17448438 G C 41 64 BRCA TCGA-A2-A04X LRP2 SNP Missense_Mutation 2 170060630 C G 23 100 BRCA TCGA-A2-A04X FBXO11 SNP Missense_Mutation 2 48047527 C T 29 100 BRCA TCGA-A2-A04X ZNF840 SNP Missense_Mutation 20 45093521 A G 2 55 BRCA TCGA-A2-A04X IL10RB SNP Missense_Mutation 21 34652113 C T 27 60 BRCA TCGA-A2-A04X SHROOM4 SNP Silent 23 50376535 G A 47 51 BRCA TCGA-A2-A04X NNT SNP Missense_Mutation 5 43704416 C G 32 71 BRCA TCGA-A2-A04X WTAP SNP Silent 6 160169354 G T 47 100 BRCA TCGA-A2-A04X LRRC16A SNP Silent 6 25600890 G A 41 47 BRCA TCGA-A2-A04X PTK7 SNP Silent 6 43099859 G A 33 56 BRCA TCGA-A2-A04X CLIC5 SNP Missense_Mutation 6 46047880 C T 29 52 BRCA TCGA-A2-A04X GSTA5 SNP Silent 6 52701123 G A 40 56 BRCA TCGA-A2-A04X MGAM SNP Missense_Mutation 7 141780655 C T 30 58 BRCA TCGA-A2-A04X STK31 SNP Missense_Mutation 7 23825188 G C 40 88 BRCA TCGA-A2-A04X COL1A2 SNP Missense_Mutation 7 94043006 C T 28 77 BRCA TCGA-A2-A04X CA9 SNP Missense_Mutation 9 35674290 G T 41 79 BRCA TCGA-A2-A04X OGN SNP Missense_Mutation 9 95147960 C G 30 73 BRCA TCGA-A2-A04Y DVL1 SNP Silent 1 1275142 C A 25 55 BRCA TCGA-A2-A04Y NBPF14 SNP Missense_Mutation 1 148017589 G A 41 46 BRCA TCGA-A2-A04Y VPS72 SNP Silent 1 151150560 G A 39 33 BRCA TCGA-A2-A04Y WDR64 SNP Missense_Mutation 1 241823900 G C 33 79 BRCA TCGA-A2-A04Y AHDC1 SNP Missense_Mutation 1 27876673 T G 59 87 BRCA TCGA-A2-A04Y GJB4 SNP Missense_Mutation 1 35227586 A C 6 48 BRCA TCGA-A2-A04Y C1orf50 SNP Missense_Mutation 1 43232996 C T 26 45 BRCA TCGA-A2-A04Y PIP4K2A SNP Missense_Mutation 10 22880688 G T 43 100 BRCA TCGA-A2-A04Y ZNF438 DEL In_Frame_Del 10 31138771 CTGGCT - 28 51 BRCA TCGA-A2-A04Y ARNTL DEL Splice_site 11 13375994 CAGTA - 21 74 BRCA TCGA-A2-A04Y SOX6 SNP Splice_site 11 16007966 C T 30 100 BRCA TCGA-A2-A04Y ATHL1 SNP Missense_Mutation 11 289844 A C 6 43 BRCA TCGA-A2-A04Y NR1H4 SNP Missense_Mutation 12 100928730 G C 33 98 BRCA TCGA-A2-A04Y IPO8 SNP Missense_Mutation 12 30822138 C G 29 97 BRCA TCGA-A2-A04Y AP1G2 SNP Missense_Mutation 14 24035597 C T 24 91 BRCA TCGA-A2-A04Y BDKRB2 SNP Missense_Mutation 14 96707798 G T 38 53 BRCA TCGA-A2-A04Y UNC45A SNP Missense_Mutation 15 91479403 C T 22 60 BRCA TCGA-A2-A04Y DYNC1LI2 SNP Missense_Mutation 16 66766320 T C 49 79 BRCA TCGA-A2-A04Y P2RX5 SNP Missense_Mutation 17 3592830 C T 19 31 BRCA TCGA-A2-A04Y ARHGAP23 SNP Missense_Mutation 17 36646353 C A 19 31 BRCA TCGA-A2-A04Y RNF213 SNP Missense_Mutation 17 78346457 A C 14 72 BRCA TCGA-A2-A04Y PAFAH1B3 SNP Missense_Mutation 19 42801429 T G 59 53 BRCA TCGA-A2-A04Y RGPD4 SNP Missense_Mutation 2 108496541 C A 25 81 BRCA TCGA-A2-A04Y NEB SNP Splice_Site 2 152420119 C A 18 98 BRCA TCGA-A2-A04Y PXDN INS Frame_Shift_Ins 2 1684022 - AT 41 83 BRCA TCGA-A2-A04Y CALCRL SNP Missense_Mutation 2 188211077 C G 30 80 BRCA TCGA-A2-A04Y CPXCR1 SNP Missense_Mutation 23 88008777 C T 25 40 BRCA TCGA-A2-A04Y HRH1 SNP Missense_Mutation 3 11301157 C T 31 59 BRCA TCGA-A2-A04Y LDB2 SNP Missense_Mutation 4 16597371 G T 44 71 BRCA TCGA-A2-A04Y KIAA0232 DEL Frame_Shift_Del 4 6863013 A - 9 66 BRCA TCGA-A2-A04Y ADGB SNP Missense_Mutation 6 147047304 G A 45 81 BRCA TCGA-A2-A04Y TIAM2 DEL In_Frame_Del 6 155571033 AGA - 7 92 BRCA TCGA-A2-A04Y CCDC167 SNP Missense_Mutation 6 37452634 A C 10 63 BRCA TCGA-A2-A04Y GIGYF1 SNP Silent 7 100285619 G A 40 47 BRCA TCGA-A2-A04Y CALU SNP Missense_Mutation 7 128388708 A G 3 76 BRCA TCGA-A2-A04Y ENPP2 SNP Missense_Mutation 8 120594788 T C 51 91 BRCA TCGA-A2-A04Y EGR3 DEL Frame_Shift_Del 8 22548865 G - 47 58 BRCA TCGA-A2-A04Y TNC SNP Missense_Mutation 9 117838681 T C 60 72 BRCA TCGA-A2-A04Y CAMSAP1 SNP Missense_Mutation 9 138710894 C A 28 56 BRCA TCGA-A2-A04Y PCSK5 SNP Nonstop_Mutation 9 78790217 A C 15 45 BRCA TCGA-A2-A04Y NOL8 SNP Silent 9 95077554 A C 11 52 BRCA TCGA-A2-A0CL ZC3H12C SNP Missense_Mutation 11 110035921 C T 23 85 BRCA TCGA-A2-A0CL MDM2 SNP Missense_Mutation 12 69233129 C T 31 79 BRCA TCGA-A2-A0CL ATN1 SNP Missense_Mutation 12 7045461 C T 24 59 BRCA TCGA-A2-A0CL TPPP2 SNP Missense_Mutation 14 21500171 A G 10 61 BRCA TCGA-A2-A0CL ARHGAP23 SNP Missense_Mutation 17 36626102 G A 38 70 BRCA TCGA-A2-A0CL MRC2 SNP Nonsense_Mutation 17 60765922 C A 31 79 BRCA TCGA-A2-A0CL KLK12 SNP Silent 19 51535184 G A 39 12 BRCA TCGA-A2-A0CL REV1 SNP Nonsense_Mutation 2 100046338 G C 45 96 BRCA TCGA-A2-A0CL SCN2A SNP Missense_Mutation 2 166179704 A T 10 69 BRCA TCGA-A2-A0CL C20orf72 SNP Nonsense_Mutation 20 17970619 G A 41 86 BRCA TCGA-A2-A0CL PYGB SNP Missense_Mutation 20 25252034 C T 29 95 BRCA TCGA-A2-A0CL POFUT2 SNP Silent 21 46705636 G A 45 64 BRCA TCGA-A2-A0CL CARD10 SNP Nonsense_Mutation 22 37912135 G A 45 76 BRCA TCGA-A2-A0CL ENOX2 SNP Missense_Mutation 23 129769019 A C 3 75 BRCA TCGA-A2-A0CL HDX SNP Missense_Mutation 23 83723943 C T 19 84 BRCA TCGA-A2-A0CL SLC2A2 SNP Missense_Mutation 3 170736326 A G 11 49 BRCA TCGA-A2-A0CL CEP135 SNP Nonsense_Mutation 4 56883874 C T 31 53 BRCA TCGA-A2-A0CL MEP1A SNP Silent 6 46803035 G A 45 51 BRCA TCGA-A2-A0CL C9orf114 SNP Missense_Mutation 9 131587304 C G 30 69 BRCA TCGA-A2-A0CM LOC100131261 SNP Missense_Mutation 1 118320960 G T 46 65 BRCA TCGA-A2-A0CM PRUNE SNP Missense_Mutation 1 150999720 G A 45 87 BRCA TCGA-A2-A0CM YY1AP1 SNP Missense_Mutation 1 155646348 C G 32 66 BRCA TCGA-A2-A0CM SPTA1 SNP Missense_Mutation 1 158589080 C A 32 62 BRCA TCGA-A2-A0CM SZT2 SNP Missense_Mutation 1 43908878 G C 33 79 BRCA TCGA-A2-A0CM SMNDC1 SNP Silent 10 112057441 G A 39 48 BRCA TCGA-A2-A0CM MGMT SNP Nonsense_Mutation 10 131565072 C A 26 55 BRCA TCGA-A2-A0CM ZNF22 SNP Missense_Mutation 10 45499229 C T 22 82 BRCA TCGA-A2-A0CM EXPH5 SNP Silent 11 108381164 C T 32 52 BRCA TCGA-A2-A0CM OR4C12 SNP Silent 11 50003441 C T 29 56 BRCA TCGA-A2-A0CM ODZ4 SNP Missense_Mutation 11 78399254 C T 27 99 BRCA TCGA-A2-A0CM C12orf71 SNP Missense_Mutation 12 27235309 C A 24 57 BRCA TCGA-A2-A0CM BICD1 SNP Missense_Mutation 12 32520614 G A 34 94 BRCA TCGA-A2-A0CM IFT88 SNP Missense_Mutation 13 21173632 G T 33 78 BRCA TCGA-A2-A0CM BMP4 SNP Nonsense_Mutation 14 54416966 G T 42 77 BRCA TCGA-A2-A0CM SLTM SNP Silent 15 59205704 T A 64 60 BRCA TCGA-A2-A0CM ZNF689 SNP Missense_Mutation 16 30615937 C T 23 64 BRCA TCGA-A2-A0CM CDH11 SNP Missense_Mutation 16 65032473 G T 41 95 BRCA TCGA-A2-A0CM IRF8 SNP Silent 16 85954813 C G 32 56 BRCA TCGA-A2-A0CM LOC100288795 INS In_Frame_Ins 17 4544978 - TGA 41 50 BRCA TCGA-A2-A0CM TP53 DEL Frame_Shift_Del 17 7578239 C - 30 51 BRCA TCGA-A2-A0CM CARD14 SNP Silent 17 78171932 C T 32 44 BRCA TCGA-A2-A0CM ZCCHC2 SNP Missense_Mutation 18 60242018 C G 32 68 BRCA TCGA-A2-A0CM SYDE1 SNP Missense_Mutation 19 15222237 C G 29 78 BRCA TCGA-A2-A0CM FAM129C SNP Missense_Mutation 19 17664329 C T 30 51 BRCA TCGA-A2-A0CM ZNF77 SNP Missense_Mutation 19 2933696 G C 45 38 BRCA TCGA-A2-A0CM TTYH1 SNP Missense_Mutation 19 54946801 C T 32 69 BRCA TCGA-A2-A0CM ADA SNP Splice_site 20 43257689 C T 27 93 BRCA TCGA-A2-A0CM CBS SNP Missense_Mutation 21 44479399 C T 28 71 BRCA TCGA-A2-A0CM ATP1B3 SNP Nonsense_Mutation 3 141622516 C G 29 75 BRCA TCGA-A2-A0CM GMPS SNP Missense_Mutation 3 155623998 G C 33 100 BRCA TCGA-A2-A0CM CCDC39 SNP Nonsense_Mutation 3 180359800 G A 45 83 BRCA TCGA-A2-A0CM FREM3 SNP Missense_Mutation 4 144619575 C T 32 79 BRCA TCGA-A2-A0CM CDKL2 SNP Nonsense_Mutation 4 76529120 G A 45 88 BRCA TCGA-A2-A0CM HPSE SNP Missense_Mutation 4 84255926 G T 38 53 BRCA TCGA-A2-A0CM CDC20B SNP Silent 5 54436170 G C 33 50 BRCA TCGA-A2-A0CM THBS4 SNP Missense_Mutation 5 79366973 G A 33 100 BRCA TCGA-A2-A0CM ELL2 SNP Missense_Mutation 5 95236466 C G 32 58 BRCA TCGA-A2-A0CM PRSS35 SNP Missense_Mutation 6 84234145 G A 37 88 BRCA TCGA-A2-A0CM PPP1R9A SNP Silent 7 94855425 A G 3 55 BRCA TCGA-A2-A0CM KIAA0146 SNP Silent 8 48614556 G T 39 50 BRCA TCGA-A2-A0CM CHD7 SNP Silent 8 61693870 C A 21 53 BRCA TCGA-A2-A0CM PRDM14 INS Splice_site 8 70971077 - G 54 71 BRCA TCGA-A2-A0CM TRIQK SNP Missense_Mutation 8 93929213 C T 18 87 BRCA TCGA-A2-A0CM COBRA1 DEL In_Frame_Del 9 140166539 CCTTTGGCGACTTGG - 18 79 BRCA TCGA-A2-A0CM IFNA2 SNP Missense_Mutation 9 21385235 G T 35 58 BRCA TCGA-A2-A0CM SLC28A3 SNP Missense_Mutation 9 86909149 C T 25 69 BRCA TCGA-A2-A0CP NID1 SNP Missense_Mutation 1 236201470 C T 27 44 BRCA TCGA-A2-A0CP METTL7A SNP Missense_Mutation 12 51323842 C T 26 68 BRCA TCGA-A2-A0CP ENSG00000234719 DEL In_Frame_Del 16 12021296 TGG - 51 51 BRCA TCGA-A2-A0CP CMIP DEL Frame_Shift_Del 16 81739192 GC - 42 83 BRCA TCGA-A2-A0CP KRTAP4-9 SNP Missense_Mutation 17 39262140 C A 30 63 BRCA TCGA-A2-A0CP BAHCC1 DEL Frame_Shift_Del 17 79412530 C - 30 57 BRCA TCGA-A2-A0CP CLHC1 SNP Missense_Mutation 2 55408757 C A 30 61 BRCA TCGA-A2-A0CP PCIF1 SNP Silent 20 44575922 G A 39 43 BRCA TCGA-A2-A0CP MSL3 SNP Missense_Mutation 23 11783689 C T 27 73 BRCA TCGA-A2-A0CP AWAT2 SNP Missense_Mutation 23 69262054 C T 23 48 BRCA TCGA-A2-A0CP PIK3CA SNP Missense_Mutation 3 178938934 G A 45 98 BRCA TCGA-A2-A0CP PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A2-A0CP MYRIP SNP Missense_Mutation 3 40275393 T C 55 80 BRCA TCGA-A2-A0CP MRFAP1L1 SNP Missense_Mutation 4 6711224 C T 31 55 BRCA TCGA-A2-A0CP MAP3K1 SNP Nonsense_Mutation 5 56170973 G T 41 94 BRCA TCGA-A2-A0CP BTN3A2 SNP Silent 6 26368860 C T 24 52 BRCA TCGA-A2-A0CP POLR1C SNP Splice_site 6 43484915 A G 4 86 BRCA TCGA-A2-A0CP SNTG1 SNP Silent 8 51449300 C T 27 54 BRCA TCGA-A2-A0CP GAPVD1 SNP Missense_Mutation 9 128117999 G A 47 100 BRCA TCGA-A2-A0CQ SLC9C2 SNP Silent 1 173542380 G A 36 52 BRCA TCGA-A2-A0CQ PADI4 SNP Missense_Mutation 1 17668843 C T 27 84 BRCA TCGA-A2-A0CQ SLC9A1 SNP Silent 1 27436074 G C 33 64 BRCA TCGA-A2-A0CQ MACF1 SNP Missense_Mutation 1 39853331 G C 36 52 BRCA TCGA-A2-A0CQ AGRN SNP Silent 1 985656 C T 19 39 BRCA TCGA-A2-A0CQ DIP2C SNP Silent 10 323355 G A 45 80 BRCA TCGA-A2-A0CQ ENSG00000181943 SNP Missense_Mutation 11 55259570 G T 41 55 BRCA TCGA-A2-A0CQ CACNA1C SNP Silent 12 2797846 C T 27 63 BRCA TCGA-A2-A0CQ OR6C2 SNP Silent 12 55846918 A G 8 49 BRCA TCGA-A2-A0CQ AKAP11 SNP Missense_Mutation 13 42875568 G A 36 62 BRCA TCGA-A2-A0CQ TRIP11 SNP Missense_Mutation 14 92499550 T C 52 46 BRCA TCGA-A2-A0CQ CTCF SNP Missense_Mutation 16 67654645 C G 30 100 BRCA TCGA-A2-A0CQ NEK8 SNP Missense_Mutation 17 27068449 G C 47 99 BRCA TCGA-A2-A0CQ MFSD11 SNP Silent 17 74772590 C T 27 41 BRCA TCGA-A2-A0CQ ENSG00000237368 SNP Silent 18 14156234 A G 13 50 BRCA TCGA-A2-A0CQ ZNF878 SNP Silent 19 12164066 C T 22 44 BRCA TCGA-A2-A0CQ PALM3 SNP Silent 19 14165287 C T 23 31 BRCA TCGA-A2-A0CQ UPF1 SNP Missense_Mutation 19 18965708 C T 19 82 BRCA TCGA-A2-A0CQ ZNF578 SNP Missense_Mutation 19 53014601 T A 58 47 BRCA TCGA-A2-A0CQ DOCK10 SNP Missense_Mutation 2 225729785 C T 20 81 BRCA TCGA-A2-A0CQ STARD7 SNP Missense_Mutation 2 96861112 G A 43 90 BRCA TCGA-A2-A0CQ CLTCL1 SNP Missense_Mutation 22 19203720 G A 37 93 BRCA TCGA-A2-A0CQ AFF2 SNP Missense_Mutation 23 147744200 C A 32 69 BRCA TCGA-A2-A0CQ PTCHD1 SNP Missense_Mutation 23 23397729 A T 12 86 BRCA TCGA-A2-A0CQ BOC SNP Silent 3 113005658 C T 22 46 BRCA TCGA-A2-A0CQ PLXNA1 SNP Splice_Site 3 126736736 G A 44 97 BRCA TCGA-A2-A0CQ COL6A5 SNP Missense_Mutation 3 130116502 C T 22 62 BRCA TCGA-A2-A0CQ IQCG SNP Missense_Mutation 3 197618393 A G 4 62 BRCA TCGA-A2-A0CQ NDNF SNP Missense_Mutation 4 121966920 G A 39 64 BRCA TCGA-A2-A0CQ PIK3R1 INS In_Frame_Ins 5 67589607 - AGAAAAAAGTCG 5 89 BRCA TCGA-A2-A0CQ MEPCE SNP Silent 7 100028415 T A 55 59 BRCA TCGA-A2-A0CQ KCTD7 SNP Missense_Mutation 7 66103260 G T 38 98 BRCA TCGA-A2-A0CQ GRHL2 SNP Missense_Mutation 8 102661656 A T 11 61 BRCA TCGA-A2-A0CQ KCNV1 SNP Silent 8 110980575 C T 23 36 BRCA TCGA-A2-A0CQ IPPK SNP Silent 9 95381788 A G 11 49 BRCA TCGA-A2-A0CS VPS13D SNP Missense_Mutation 1 12445347 G A 34 68 BRCA TCGA-A2-A0CS GPA33 SNP Silent 1 167024281 G T 46 46 BRCA TCGA-A2-A0CS FMO1 SNP Missense_Mutation 1 171236862 C A 29 85 BRCA TCGA-A2-A0CS PTPN14 SNP Missense_Mutation 1 214557597 G A 37 78 BRCA TCGA-A2-A0CS LARP4B SNP Missense_Mutation 10 871788 C A 30 71 BRCA TCGA-A2-A0CS OR4S2 SNP Missense_Mutation 11 55419253 G T 36 56 BRCA TCGA-A2-A0CS OR10A2 SNP Missense_Mutation 11 6891161 G T 42 73 BRCA TCGA-A2-A0CS CDKN1B INS Frame_Shift_Ins 12 12871146 - C 54 52 BRCA TCGA-A2-A0CS GLT1D1 SNP Silent 12 129467539 C T 19 28 BRCA TCGA-A2-A0CS RAPGEF3 SNP Nonsense_Mutation 12 48141337 G A 38 59 BRCA TCGA-A2-A0CS DLK1 SNP Silent 14 101200651 C T 27 51 BRCA TCGA-A2-A0CS ATG2B SNP Missense_Mutation 14 96797849 T C 62 80 BRCA TCGA-A2-A0CS MAN2C1 SNP Silent 15 75651980 C T 23 43 BRCA TCGA-A2-A0CS PRSS33 SNP Missense_Mutation 16 2834663 C G 24 59 BRCA TCGA-A2-A0CS MYH1 SNP Silent 17 10404694 G A 39 27 BRCA TCGA-A2-A0CS TRIM16L SNP Silent 17 18638608 C T 27 29 BRCA TCGA-A2-A0CS KRT35 SNP Silent 17 39633898 G T 43 30 BRCA TCGA-A2-A0CS LLGL2 DEL Frame_Shift_Del 17 73564739 GCCGGCA - 38 86 BRCA TCGA-A2-A0CS DSG3 SNP Missense_Mutation 18 29044224 C T 23 57 BRCA TCGA-A2-A0CS S1PR5 SNP Missense_Mutation 19 10625096 C T 19 72 BRCA TCGA-A2-A0CS JSRP1 SNP Splice_Site 19 2254442 A T 6 65 BRCA TCGA-A2-A0CS BMPR2 SNP Nonsense_Mutation 2 203242213 C T 25 79 BRCA TCGA-A2-A0CS KIF16B SNP Missense_Mutation 20 16486798 C T 20 100 BRCA TCGA-A2-A0CS ATP2B3 SNP Missense_Mutation 23 152807217 G T 48 62 BRCA TCGA-A2-A0CS FAM120C SNP Silent 23 54161503 T A 51 51 BRCA TCGA-A2-A0CS TBL1XR1 SNP Missense_Mutation 3 176752091 T C 52 55 BRCA TCGA-A2-A0CS PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A2-A0CS ADH7 SNP Missense_Mutation 4 100341731 C T 19 67 BRCA TCGA-A2-A0CS ADAMTS2 SNP Silent 5 178556987 G A 40 35 BRCA TCGA-A2-A0CS GPR98 SNP Silent 5 90086905 T C 55 50 BRCA TCGA-A2-A0CS LOC100287918 SNP Silent 6 127981108 T C 51 46 BRCA TCGA-A2-A0CS VNN1 SNP Missense_Mutation 6 133015262 T C 49 85 BRCA TCGA-A2-A0CS OR10C1 SNP Silent 6 29408551 C T 23 40 BRCA TCGA-A2-A0CS MDGA1 DEL Frame_Shift_Del 6 37612289 TA - 61 52 BRCA TCGA-A2-A0CS PKHD1 SNP Missense_Mutation 6 51637584 A T 2 76 BRCA TCGA-A2-A0CS ZNF292 SNP Silent 6 87865327 C T 23 78 BRCA TCGA-A2-A0CS TAS2R16 SNP Missense_Mutation 7 122635049 G A 45 53 BRCA TCGA-A2-A0CS MLL3 INS Frame_Shift_Ins 7 151851131 - A 49 47 BRCA TCGA-A2-A0CS EFR3A DEL Frame_Shift_Del 8 132998454 G - 37 93 BRCA TCGA-A2-A0CS ST3GAL1 DEL In_Frame_Del 8 134474151 GAGGAT - 33 48 BRCA TCGA-A2-A0CS SARDH SNP Missense_Mutation 9 136599022 C T 21 57 BRCA TCGA-A2-A0CS LINGO2 SNP Missense_Mutation 9 27949369 G T 46 100 BRCA TCGA-A2-A0CS DIRAS2 SNP Missense_Mutation 9 93375893 G A 38 98 BRCA TCGA-A2-A0CT TCHH SNP Missense_Mutation 1 152085140 C G 32 51 BRCA TCGA-A2-A0CT UBAP2L SNP Silent 1 154229568 C T 30 51 BRCA TCGA-A2-A0CT HSPA7 SNP Missense_Mutation 1 161577161 G A 34 63 BRCA TCGA-A2-A0CT ASPM SNP Silent 1 197111819 G T 45 59 BRCA TCGA-A2-A0CT SIPA1L2 SNP Missense_Mutation 1 232561348 C T 21 59 BRCA TCGA-A2-A0CT LYST SNP Missense_Mutation 1 235969153 C T 32 80 BRCA TCGA-A2-A0CT SLC2A1 SNP Silent 1 43393369 G A 45 75 BRCA TCGA-A2-A0CT LRRIQ3 SNP Missense_Mutation 1 74507579 C A 30 60 BRCA TCGA-A2-A0CT INPP5F SNP Nonsense_Mutation 10 121583335 C T 29 100 BRCA TCGA-A2-A0CT NUDT5 SNP Missense_Mutation 10 12215795 C T 29 94 BRCA TCGA-A2-A0CT FRMD4A SNP Silent 10 13782556 G A 36 67 BRCA TCGA-A2-A0CT KIF11 SNP Missense_Mutation 10 94393475 G T 48 53 BRCA TCGA-A2-A0CT MUC6 SNP Missense_Mutation 11 1015932 G A 37 53 BRCA TCGA-A2-A0CT MUC6 SNP Silent 11 1015973 G A 45 52 BRCA TCGA-A2-A0CT MUC6 SNP Missense_Mutation 11 1017276 G C 33 49 BRCA TCGA-A2-A0CT NDUFS3 SNP Silent 11 47603972 C T 31 54 BRCA TCGA-A2-A0CT OR10A6 SNP Missense_Mutation 11 7949711 G A 41 51 BRCA TCGA-A2-A0CT ALDH1L2 SNP Silent 12 105456678 G A 40 54 BRCA TCGA-A2-A0CT MLL2 SNP Missense_Mutation 12 49427728 T A 54 90 BRCA TCGA-A2-A0CT MCRS1 SNP Missense_Mutation 12 49953743 G C 38 64 BRCA TCGA-A2-A0CT KRT1 SNP Missense_Mutation 12 53069105 C T 22 58 BRCA TCGA-A2-A0CT VWF SNP Silent 12 6122726 G A 40 43 BRCA TCGA-A2-A0CT RCBTB2 SNP Silent 13 49075943 A T 7 43 BRCA TCGA-A2-A0CT MYH6 SNP Silent 14 23874854 G A 40 51 BRCA TCGA-A2-A0CT LTBP2 SNP Missense_Mutation 14 74972768 C T 27 55 BRCA TCGA-A2-A0CT SERPINA10 SNP Silent 14 94756847 C T 27 31 BRCA TCGA-A2-A0CT HCN4 SNP Missense_Mutation 15 73621931 G A 38 68 BRCA TCGA-A2-A0CT FBXO22 SNP Missense_Mutation 15 76196845 T C 51 73 BRCA TCGA-A2-A0CT MYH11 SNP Missense_Mutation 16 15818522 G C 33 57 BRCA TCGA-A2-A0CT TBL3 SNP Missense_Mutation 16 2024405 A G 10 64 BRCA TCGA-A2-A0CT ZSCAN10 SNP Silent 16 3140511 G A 37 6 BRCA TCGA-A2-A0CT ADCY7 SNP Missense_Mutation 16 50324435 C G 32 57 BRCA TCGA-A2-A0CT GPR97 SNP Missense_Mutation 16 57714456 C T 19 68 BRCA TCGA-A2-A0CT EFCAB5 SNP Missense_Mutation 17 28380797 C T 19 51 BRCA TCGA-A2-A0CT NXN SNP Silent 17 729229 C T 26 49 BRCA TCGA-A2-A0CT ST6GALNAC1 SNP Missense_Mutation 17 74623542 C G 30 76 BRCA TCGA-A2-A0CT CCDC40 SNP Missense_Mutation 17 78055837 C A 25 75 BRCA TCGA-A2-A0CT MYH10 SNP Missense_Mutation 17 8384646 G A 33 84 BRCA TCGA-A2-A0CT MYH10 SNP Missense_Mutation 17 8424562 C T 29 100 BRCA TCGA-A2-A0CT CDH2 SNP Missense_Mutation 18 25565518 C G 32 65 BRCA TCGA-A2-A0CT KIAA1468 SNP Silent 18 59854856 C A 31 60 BRCA TCGA-A2-A0CT ANKRD12 SNP Missense_Mutation 18 9195688 C T 29 94 BRCA TCGA-A2-A0CT STX10 SNP Nonsense_Mutation 19 13260551 C A 32 78 BRCA TCGA-A2-A0CT ZNF486 SNP Missense_Mutation 19 20308633 C G 29 78 BRCA TCGA-A2-A0CT CYP2S1 SNP Silent 19 41703775 C T 27 49 BRCA TCGA-A2-A0CT ZNF473 SNP Missense_Mutation 19 50548923 G T 40 93 BRCA TCGA-A2-A0CT OR2Z1 SNP Silent 19 8841768 G T 48 56 BRCA TCGA-A2-A0CT CNGA3 SNP Missense_Mutation 2 99013495 C T 27 56 BRCA TCGA-A2-A0CT TMEM74B SNP Silent 20 1161624 G A 46 63 BRCA TCGA-A2-A0CT SYCP2 SNP Missense_Mutation 20 58467646 G A 37 54 BRCA TCGA-A2-A0CT KCTD17 SNP Silent 22 37455388 C T 27 40 BRCA TCGA-A2-A0CT ZNF280C SNP Missense_Mutation 23 129370542 G T 44 60 BRCA TCGA-A2-A0CT TBL1X SNP Missense_Mutation 23 9683009 G T 41 90 BRCA TCGA-A2-A0CT CHRD SNP Silent 3 184104513 C T 19 49 BRCA TCGA-A2-A0CT CEP19 SNP Nonsense_Mutation 3 196434580 C A 30 70 BRCA TCGA-A2-A0CT CLASP2 SNP Missense_Mutation 3 33644558 C T 29 96 BRCA TCGA-A2-A0CT AMIGO3 SNP Missense_Mutation 3 49756034 A G 14 49 BRCA TCGA-A2-A0CT FLNB INS In_Frame_Ins 3 58135903 - CGT 22 77 BRCA TCGA-A2-A0CT IL17RC SNP Silent 3 9974335 C T 32 52 BRCA TCGA-A2-A0CT ZNF518B SNP Missense_Mutation 4 10445216 C T 30 71 BRCA TCGA-A2-A0CT ANK2 SNP Missense_Mutation 4 114238897 C G 32 77 BRCA TCGA-A2-A0CT TKTL2 SNP Missense_Mutation 4 164393824 A G 4 73 BRCA TCGA-A2-A0CT GRK4 SNP Missense_Mutation 4 3039136 C G 31 36 BRCA TCGA-A2-A0CT FRYL SNP Silent 4 48636482 A G 16 62 BRCA TCGA-A2-A0CT C4orf40 SNP Missense_Mutation 4 71021774 C T 19 50 BRCA TCGA-A2-A0CT TSLP SNP Silent 5 110411667 G A 33 52 BRCA TCGA-A2-A0CT PCDHA4 SNP Missense_Mutation 5 140188814 G A 39 64 BRCA TCGA-A2-A0CT PCDHGB4 SNP Silent 5 140768708 C T 23 36 BRCA TCGA-A2-A0CT LARS SNP Missense_Mutation 5 145537087 C T 30 76 BRCA TCGA-A2-A0CT ITK SNP Missense_Mutation 5 156638350 G A 39 91 BRCA TCGA-A2-A0CT BTNL3 SNP Missense_Mutation 5 180420100 G A 47 49 BRCA TCGA-A2-A0CT RASA1 SNP Missense_Mutation 5 86564633 C T 31 65 BRCA TCGA-A2-A0CT AKAP12 SNP Missense_Mutation 6 151671669 G A 45 100 BRCA TCGA-A2-A0CT HIST1H2AK SNP Missense_Mutation 6 27806113 G A 37 73 BRCA TCGA-A2-A0CT ABCF1 SNP Missense_Mutation 6 30558385 G C 33 59 BRCA TCGA-A2-A0CT TAP1 SNP Silent 6 32813449 G A 38 50 BRCA TCGA-A2-A0CT TBCC SNP Missense_Mutation 6 42713573 G A 37 77 BRCA TCGA-A2-A0CT TTBK1 SNP Missense_Mutation 6 43251629 C T 31 69 BRCA TCGA-A2-A0CT CDYL SNP Missense_Mutation 6 4943943 G A 33 99 BRCA TCGA-A2-A0CT RREB1 SNP Missense_Mutation 6 7247355 G A 40 48 BRCA TCGA-A2-A0CT TBX18 SNP Missense_Mutation 6 85448266 G T 44 98 BRCA TCGA-A2-A0CT ABCB1 SNP Silent 7 87135240 C T 19 45 BRCA TCGA-A2-A0CT SLC25A13 SNP Missense_Mutation 7 95822392 C T 27 100 BRCA TCGA-A2-A0CT RP1L1 SNP Missense_Mutation 8 10469311 G A 38 56 BRCA TCGA-A2-A0CT PKHD1L1 SNP Missense_Mutation 8 110499005 C T 19 75 BRCA TCGA-A2-A0CT EXT1 SNP Missense_Mutation 8 119122505 T C 62 92 BRCA TCGA-A2-A0CT ATAD2 SNP Silent 8 124340530 C T 30 52 BRCA TCGA-A2-A0CT LYN SNP Missense_Mutation 8 56864664 A T 2 49 BRCA TCGA-A2-A0CT SETX DEL In_Frame_Del 9 135140193 ACC - 2 53 BRCA TCGA-A2-A0CT ZNF658 SNP Missense_Mutation 9 40772564 C T 27 59 BRCA TCGA-A2-A0CT PRUNE2 SNP Missense_Mutation 9 79325463 C T 20 70 BRCA TCGA-A2-A0CU IRF2BP2 INS Frame_Shift_Ins 1 234743301 - A 41 100 BRCA TCGA-A2-A0CU LOC729020 SNP Missense_Mutation 10 105006118 G T 41 53 BRCA TCGA-A2-A0CU GLB1L3 SNP Missense_Mutation 11 134179562 C T 30 79 BRCA TCGA-A2-A0CU ABCC8 SNP Missense_Mutation 11 17428939 G A 37 92 BRCA TCGA-A2-A0CU LOC645490 SNP Missense_Mutation 11 20596552 T A 51 55 BRCA TCGA-A2-A0CU EHF SNP Missense_Mutation 11 34664214 C G 22 61 BRCA TCGA-A2-A0CU OR56A1 SNP Missense_Mutation 11 6048841 G A 46 61 BRCA TCGA-A2-A0CU PGA5 SNP Missense_Mutation 11 61017206 C G 18 81 BRCA TCGA-A2-A0CU PPP1R32 SNP Missense_Mutation 11 61258004 A C 9 49 BRCA TCGA-A2-A0CU TMEM233 SNP Splice_Site 12 120031840 G A 44 87 BRCA TCGA-A2-A0CU WIF1 SNP Missense_Mutation 12 65460458 G C 33 63 BRCA TCGA-A2-A0CU GNB3 SNP Nonsense_Mutation 12 6952161 C T 19 77 BRCA TCGA-A2-A0CU CILP SNP Missense_Mutation 15 65491181 G T 34 66 BRCA TCGA-A2-A0CU SPNS1 SNP Missense_Mutation 16 28986519 C G 23 65 BRCA TCGA-A2-A0CU SRCAP SNP Missense_Mutation 16 30722123 C T 25 68 BRCA TCGA-A2-A0CU SOCS7 SNP Silent 17 36522192 C T 21 55 BRCA TCGA-A2-A0CU ZNF486 SNP Silent 19 20307906 G T 47 72 BRCA TCGA-A2-A0CU REV1 SNP Silent 2 100019354 G A 35 70 BRCA TCGA-A2-A0CU NYAP2 SNP Missense_Mutation 2 226273793 G A 37 94 BRCA TCGA-A2-A0CU NRBP1 DEL Frame_Shift_Del 2 27656951 G - 35 53 BRCA TCGA-A2-A0CU SPANXC SNP Missense_Mutation 23 140335783 C T 27 44 BRCA TCGA-A2-A0CU FMR1NB SNP Splice_site 23 147106385 C T 27 50 BRCA TCGA-A2-A0CU LOC100288788 SNP Silent 23 65176943 T C 58 47 BRCA TCGA-A2-A0CU KIAA2022 DEL Frame_Shift_Del 23 73963301 A - 9 69 BRCA TCGA-A2-A0CU DGKG SNP Splice_site 3 185986591 G A 40 98 BRCA TCGA-A2-A0CU LDB2 SNP Missense_Mutation 4 16504298 A T 12 63 BRCA TCGA-A2-A0CU SNX25 SNP Splice_Site 4 186274637 A T 7 90 BRCA TCGA-A2-A0CU DCAF4L1 SNP Missense_Mutation 4 41984183 G A 39 71 BRCA TCGA-A2-A0CU YIPF7 SNP Missense_Mutation 4 44626756 A T 4 68 BRCA TCGA-A2-A0CU TMPRSS11B SNP Silent 4 69094493 A T 7 52 BRCA TCGA-A2-A0CU UPLP SNP Missense_Mutation 7 102279621 C T 31 50 BRCA TCGA-A2-A0CU PARP12 SNP Missense_Mutation 7 139726015 C G 21 85 BRCA TCGA-A2-A0CU CYP7B1 SNP Silent 8 65527680 G A 40 55 BRCA TCGA-A2-A0CU FREM1 SNP Missense_Mutation 9 14851595 G A 38 54 BRCA TCGA-A2-A0CU KDM4C SNP Silent 9 6793072 G A 36 41 BRCA TCGA-A2-A0CV ABCB10 SNP Missense_Mutation 1 229683401 G C 33 60 BRCA TCGA-A2-A0CV HS2ST1 SNP Missense_Mutation 1 87549897 A G 13 53 BRCA TCGA-A2-A0CV GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-A2-A0CV AHNAK SNP Missense_Mutation 11 62295540 T C 50 58 BRCA TCGA-A2-A0CV TMEM132D SNP Silent 12 129569107 G A 37 25 BRCA TCGA-A2-A0CV TUBA1C SNP Missense_Mutation 12 49666122 G T 47 97 BRCA TCGA-A2-A0CV FAM179B SNP Nonsense_Mutation 14 45431733 C T 31 57 BRCA TCGA-A2-A0CV SYT16 SNP Missense_Mutation 14 62536500 G A 39 50 BRCA TCGA-A2-A0CV ANPEP SNP Missense_Mutation 15 90347575 C T 23 93 BRCA TCGA-A2-A0CV VWA3A SNP Silent 16 22143005 G A 38 26 BRCA TCGA-A2-A0CV GLTSCR2 SNP Missense_Mutation 19 48258141 A G 6 55 BRCA TCGA-A2-A0CV SYT5 SNP Missense_Mutation 19 55690340 G A 47 69 BRCA TCGA-A2-A0CV HECW2 SNP Silent 2 197183859 G A 39 18 BRCA TCGA-A2-A0CV SNTA1 SNP Missense_Mutation 20 31996318 C A 26 65 BRCA TCGA-A2-A0CV CPT1B SNP Missense_Mutation 22 51008742 C T 27 62 BRCA TCGA-A2-A0CV GOLGB1 SNP Missense_Mutation 3 121415242 C A 28 57 BRCA TCGA-A2-A0CV ROBO1 SNP Missense_Mutation 3 78719385 C G 26 99 BRCA TCGA-A2-A0CV LRBA SNP Missense_Mutation 4 151223818 T C 49 90 BRCA TCGA-A2-A0CV PCDHA12 SNP Silent 5 140256806 G A 44 44 BRCA TCGA-A2-A0CV CMYA5 SNP Missense_Mutation 5 79032395 G A 38 52 BRCA TCGA-A2-A0CV TTK SNP Missense_Mutation 6 80746264 G A 43 98 BRCA TCGA-A2-A0CV FAM20C SNP Missense_Mutation 7 299785 G C 41 100 BRCA TCGA-A2-A0CV EIF2C2 SNP Missense_Mutation 8 141561427 G A 38 60 BRCA TCGA-A2-A0CV CARD9 SNP Missense_Mutation 9 139266359 T C 63 70 BRCA TCGA-A2-A0CV GNE SNP Missense_Mutation 9 36217480 C T 27 64 BRCA TCGA-A2-A0CW GNAT2 DEL Splice_Site 1 110148929 C - 18 99 BRCA TCGA-A2-A0CW SF3B4 SNP Missense_Mutation 1 149895759 C A 31 76 BRCA TCGA-A2-A0CW TSTD1 SNP Silent 1 161008416 G T 40 50 BRCA TCGA-A2-A0CW USH2A SNP Missense_Mutation 1 216348792 C T 24 69 BRCA TCGA-A2-A0CW HSPG2 SNP Missense_Mutation 1 22211365 C T 29 92 BRCA TCGA-A2-A0CW RYR2 SNP Missense_Mutation 1 237711763 C A 24 100 BRCA TCGA-A2-A0CW AKT3 SNP Splice_site 1 243727150 A G 2 61 BRCA TCGA-A2-A0CW ZNF642 SNP Missense_Mutation 1 40961283 C T 32 95 BRCA TCGA-A2-A0CW AGAP7 SNP Missense_Mutation 10 51465579 A G 13 58 BRCA TCGA-A2-A0CW ATHL1 SNP Missense_Mutation 11 289917 G A 37 67 BRCA TCGA-A2-A0CW DRD4 SNP Missense_Mutation 11 640571 G A 40 58 BRCA TCGA-A2-A0CW OR2D2 SNP Silent 11 6913663 G A 39 47 BRCA TCGA-A2-A0CW SLC6A13 SNP Missense_Mutation 12 352926 A T 3 94 BRCA TCGA-A2-A0CW PDZRN4 SNP Missense_Mutation 12 41946516 G A 37 100 BRCA TCGA-A2-A0CW CSRNP2 SNP Missense_Mutation 12 51457800 A G 11 72 BRCA TCGA-A2-A0CW C12orf57 SNP Missense_Mutation 12 7053746 G A 40 68 BRCA TCGA-A2-A0CW KIAA1199 SNP Missense_Mutation 15 81229087 C G 32 67 BRCA TCGA-A2-A0CW UNC45A SNP Missense_Mutation 15 91485969 T G 64 50 BRCA TCGA-A2-A0CW CNOT1 SNP Nonsense_Mutation 16 58589801 G A 45 100 BRCA TCGA-A2-A0CW CCDC79 SNP Missense_Mutation 16 66803899 G T 36 50 BRCA TCGA-A2-A0CW WWP2 SNP Missense_Mutation 16 69971470 A T 7 92 BRCA TCGA-A2-A0CW ZNF821 SNP Missense_Mutation 16 71893986 C G 30 76 BRCA TCGA-A2-A0CW MYO1D SNP Missense_Mutation 17 31087405 A T 12 89 BRCA TCGA-A2-A0CW CDK12 SNP Missense_Mutation 17 37681111 G T 44 66 BRCA TCGA-A2-A0CW EZH1 SNP Missense_Mutation 17 40856673 C G 27 100 BRCA TCGA-A2-A0CW TP53 SNP Nonsense_Mutation 17 7578263 G A 39 67 BRCA TCGA-A2-A0CW RNF213 SNP Missense_Mutation 17 78360175 C T 31 50 BRCA TCGA-A2-A0CW MAFG SNP Silent 17 79880760 C T 29 52 BRCA TCGA-A2-A0CW MFSD6L SNP Missense_Mutation 17 8702017 G C 47 52 BRCA TCGA-A2-A0CW BCAT2 SNP Missense_Mutation 19 49303011 C T 19 43 BRCA TCGA-A2-A0CW VRK3 SNP Missense_Mutation 19 50482398 G T 33 53 BRCA TCGA-A2-A0CW ZNF480 SNP Missense_Mutation 19 52824933 G C 33 49 BRCA TCGA-A2-A0CW ZNF160 SNP Missense_Mutation 19 53571578 C T 29 49 BRCA TCGA-A2-A0CW ZNF160 SNP Missense_Mutation 19 53573463 A C 14 55 BRCA TCGA-A2-A0CW PPP6R1 SNP Missense_Mutation 19 55753591 G T 33 84 BRCA TCGA-A2-A0CW LRP2 SNP Missense_Mutation 2 170042184 C T 30 89 BRCA TCGA-A2-A0CW JPH2 SNP Missense_Mutation 20 42788508 C T 31 77 BRCA TCGA-A2-A0CW ZNF335 SNP Silent 20 44596988 C T 29 60 BRCA TCGA-A2-A0CW BRWD1 SNP Missense_Mutation 21 40570751 C T 30 50 BRCA TCGA-A2-A0CW BRWD1 SNP Missense_Mutation 21 40570851 C G 32 58 BRCA TCGA-A2-A0CW BRWD1 SNP Missense_Mutation 21 40571558 C G 32 65 BRCA TCGA-A2-A0CW TCEAL2 SNP Missense_Mutation 23 101382274 C A 17 65 BRCA TCGA-A2-A0CW IRS4 SNP Silent 23 107979179 G A 39 52 BRCA TCGA-A2-A0CW ITIH6 DEL Frame_Shift_Del 23 54784623 AGCAG - 7 44 BRCA TCGA-A2-A0CW RPS6KA6 SNP Missense_Mutation 23 83411145 C T 29 98 BRCA TCGA-A2-A0CW ARHGAP31 SNP Missense_Mutation 3 119133553 C T 27 61 BRCA TCGA-A2-A0CW PIK3CA SNP Missense_Mutation 3 178952090 G C 47 100 BRCA TCGA-A2-A0CW PRRT3 SNP Missense_Mutation 3 9990556 G A 38 64 BRCA TCGA-A2-A0CW SCFD2 SNP Missense_Mutation 4 54231342 G C 46 81 BRCA TCGA-A2-A0CW GRID2 SNP Missense_Mutation 4 94377069 C T 19 90 BRCA TCGA-A2-A0CW TCF7 SNP Missense_Mutation 5 133481516 T A 55 57 BRCA TCGA-A2-A0CW RTN4IP1 DEL Frame_Shift_Del 6 107076797 TAATCCTTCT - 53 71 BRCA TCGA-A2-A0CW DOPEY1 SNP Silent 6 83877655 C G 23 49 BRCA TCGA-A2-A0CW MUC12 SNP Missense_Mutation 7 100639291 C T 32 56 BRCA TCGA-A2-A0CW MUC12 SNP Missense_Mutation 7 100647790 C T 32 53 BRCA TCGA-A2-A0CW ZNF705D SNP Missense_Mutation 8 11970495 G A 37 49 BRCA TCGA-A2-A0CW EIF2C2 SNP Missense_Mutation 8 141566309 G C 36 100 BRCA TCGA-A2-A0CW RP1 SNP Missense_Mutation 8 55540804 C A 25 52 BRCA TCGA-A2-A0CW SVEP1 SNP Silent 9 113192280 A C 1 57 BRCA TCGA-A2-A0CW CCDC171 DEL Frame_Shift_Del 9 15778997 TT - 56 52 BRCA TCGA-A2-A0CX CSF1 SNP Missense_Mutation 1 110466073 C T 29 71 BRCA TCGA-A2-A0CX LYSMD1 SNP Missense_Mutation 1 151137724 G A 39 68 BRCA TCGA-A2-A0CX INSRR SNP Missense_Mutation 1 156819062 G A 39 69 BRCA TCGA-A2-A0CX IFI16 SNP Missense_Mutation 1 158988118 G A 45 64 BRCA TCGA-A2-A0CX DEGS1 SNP Missense_Mutation 1 224377343 G A 45 62 BRCA TCGA-A2-A0CX NVL SNP Missense_Mutation 1 224477395 C T 28 51 BRCA TCGA-A2-A0CX KIAA1383 SNP Missense_Mutation 1 232942483 G A 45 59 BRCA TCGA-A2-A0CX SCMH1 SNP Silent 1 41617301 G A 41 58 BRCA TCGA-A2-A0CX EFCAB7 SNP Missense_Mutation 1 64027432 G C 45 53 BRCA TCGA-A2-A0CX ZZZ3 SNP Missense_Mutation 1 78034122 C G 30 51 BRCA TCGA-A2-A0CX USP33 SNP Silent 1 78191440 G C 45 55 BRCA TCGA-A2-A0CX BLOC1S2 SNP Missense_Mutation 10 102046374 C T 29 73 BRCA TCGA-A2-A0CX FAM178A SNP Silent 10 102705188 G T 45 66 BRCA TCGA-A2-A0CX C10orf2 SNP Silent 10 102748459 C T 32 50 BRCA TCGA-A2-A0CX PNLIPRP3 SNP Missense_Mutation 10 118196289 C T 29 47 BRCA TCGA-A2-A0CX DHTKD1 SNP Missense_Mutation 10 12123578 G A 45 95 BRCA TCGA-A2-A0CX FAM196A SNP Nonsense_Mutation 10 128974473 G A 48 85 BRCA TCGA-A2-A0CX STAM SNP Splice_Site 10 17702462 G C 33 95 BRCA TCGA-A2-A0CX PARD3 SNP Silent 10 34400415 C T 32 86 BRCA TCGA-A2-A0CX NET1 SNP Missense_Mutation 10 5495482 G A 45 69 BRCA TCGA-A2-A0CX C10orf107 SNP Missense_Mutation 10 63519907 G C 33 58 BRCA TCGA-A2-A0CX TCTN3 SNP Silent 10 97442429 G A 45 66 BRCA TCGA-A2-A0CX C11orf87 SNP Missense_Mutation 11 109294466 G A 38 82 BRCA TCGA-A2-A0CX HEPACAM SNP Missense_Mutation 11 124793676 C G 30 78 BRCA TCGA-A2-A0CX PSMA1 SNP Missense_Mutation 11 14539262 C A 32 82 BRCA TCGA-A2-A0CX PRR5L SNP Missense_Mutation 11 36472825 G A 44 71 BRCA TCGA-A2-A0CX RRM1 SNP Missense_Mutation 11 4133255 C T 32 100 BRCA TCGA-A2-A0CX FNBP4 SNP Missense_Mutation 11 47765568 G C 41 100 BRCA TCGA-A2-A0CX CDHR5 SNP Missense_Mutation 11 618843 C G 32 49 BRCA TCGA-A2-A0CX CDHR5 SNP Missense_Mutation 11 621446 C T 29 48 BRCA TCGA-A2-A0CX CDHR5 SNP Missense_Mutation 11 621862 C G 29 68 BRCA TCGA-A2-A0CX CDHR5 SNP Missense_Mutation 11 621871 C T 30 60 BRCA TCGA-A2-A0CX B3GNT1 SNP Silent 11 66114072 G A 39 50 BRCA TCGA-A2-A0CX C2CD3 SNP Silent 11 73789584 C T 29 50 BRCA TCGA-A2-A0CX PAK1 SNP Missense_Mutation 11 77103382 C T 32 100 BRCA TCGA-A2-A0CX RPL27A SNP Translation_Start_Site 11 8704303 G A 40 52 BRCA TCGA-A2-A0CX DEPDC4 SNP Missense_Mutation 12 100657398 T G 64 51 BRCA TCGA-A2-A0CX ALDH1L2 SNP Missense_Mutation 12 105425679 G A 41 100 BRCA TCGA-A2-A0CX SART3 SNP Missense_Mutation 12 108920032 G C 33 50 BRCA TCGA-A2-A0CX ETV6 SNP Missense_Mutation 12 11905408 C T 30 86 BRCA TCGA-A2-A0CX BICD1 SNP Missense_Mutation 12 32369283 C G 32 73 BRCA TCGA-A2-A0CX FGD4 SNP Missense_Mutation 12 32751440 G A 45 76 BRCA TCGA-A2-A0CX PKP2 SNP Missense_Mutation 12 32955343 C G 29 83 BRCA TCGA-A2-A0CX C12orf40 SNP Silent 12 40034769 G C 45 53 BRCA TCGA-A2-A0CX PPHLN1 DEL Frame_Shift_Del 12 42835152 G - 47 53 BRCA TCGA-A2-A0CX TUBA1B SNP Missense_Mutation 12 49521752 C G 32 98 BRCA TCGA-A2-A0CX CALCOCO1 SNP Nonsense_Mutation 12 54109013 C A 29 66 BRCA TCGA-A2-A0CX CS SNP Missense_Mutation 12 56668617 C G 32 99 BRCA TCGA-A2-A0CX R3HDM2 SNP Missense_Mutation 12 57648837 C T 30 95 BRCA TCGA-A2-A0CX ATP2B1 SNP Missense_Mutation 12 90015427 G T 48 98 BRCA TCGA-A2-A0CX SLC10A2 SNP Silent 13 103701763 C T 32 79 BRCA TCGA-A2-A0CX KL SNP Missense_Mutation 13 33638166 G C 33 48 BRCA TCGA-A2-A0CX ATP7B SNP Silent 13 52544779 C T 30 49 BRCA TCGA-A2-A0CX CDC42BPB SNP Missense_Mutation 14 103434954 C G 32 83 BRCA TCGA-A2-A0CX ADAM6 SNP Splice_Site 14 106800056 C T 24 48 BRCA TCGA-A2-A0CX EDDM3A SNP Silent 14 21216105 C T 17 48 BRCA TCGA-A2-A0CX ARHGAP5 SNP Nonsense_Mutation 14 32623834 C T 29 99 BRCA TCGA-A2-A0CX CCDC88C SNP Silent 14 91779976 C T 22 52 BRCA TCGA-A2-A0CX SYNE3 SNP Missense_Mutation 14 95921936 C T 29 66 BRCA TCGA-A2-A0CX DENND4A SNP Missense_Mutation 15 65962379 C G 32 100 BRCA TCGA-A2-A0CX SCAPER SNP Missense_Mutation 15 77087744 G C 41 67 BRCA TCGA-A2-A0CX TEKT5 SNP Silent 16 10721461 C T 27 35 BRCA TCGA-A2-A0CX ZC3H7A SNP Missense_Mutation 16 11868331 G A 44 62 BRCA TCGA-A2-A0CX MKL2 SNP Missense_Mutation 16 14340567 G C 33 67 BRCA TCGA-A2-A0CX NOMO1 SNP Missense_Mutation 16 14978247 G A 37 73 BRCA TCGA-A2-A0CX ABCC1 SNP Silent 16 16200631 C T 29 37 BRCA TCGA-A2-A0CX SETD1A SNP Silent 16 30970121 C T 31 51 BRCA TCGA-A2-A0CX ZNF597 SNP Missense_Mutation 16 3487521 C G 29 75 BRCA TCGA-A2-A0CX ABCC12 SNP Silent 16 48139206 G A 37 13 BRCA TCGA-A2-A0CX NOB1 SNP Silent 16 69788555 G C 37 55 BRCA TCGA-A2-A0CX PDXDC2 SNP Missense_Mutation 16 70020388 G A 37 44 BRCA TCGA-A2-A0CX HYDIN SNP Missense_Mutation 16 70889175 C T 32 66 BRCA TCGA-A2-A0CX ZNF23 SNP Silent 16 71482893 G A 45 67 BRCA TCGA-A2-A0CX ZFHX3 SNP Nonsense_Mutation 16 72830478 G A 47 77 BRCA TCGA-A2-A0CX RAB11FIP4 SNP Missense_Mutation 17 29850591 G A 41 94 BRCA TCGA-A2-A0CX RAB11FIP4 SNP Missense_Mutation 17 29850600 G C 45 94 BRCA TCGA-A2-A0CX RAB11FIP4 SNP Silent 17 29850958 G A 45 75 BRCA TCGA-A2-A0CX RAB11FIP4 SNP Silent 17 29851006 G A 47 48 BRCA TCGA-A2-A0CX TOP2A SNP Missense_Mutation 17 38569453 G C 45 62 BRCA TCGA-A2-A0CX CAMTA2 SNP Missense_Mutation 17 4876514 C G 30 94 BRCA TCGA-A2-A0CX MBTD1 SNP Missense_Mutation 17 49280258 C G 29 98 BRCA TCGA-A2-A0CX RABEP1 SNP Nonsense_Mutation 17 5235303 C T 31 68 BRCA TCGA-A2-A0CX MKS1 SNP Missense_Mutation 17 56288047 G T 47 81 BRCA TCGA-A2-A0CX SMG8 SNP Missense_Mutation 17 57292214 G A 33 96 BRCA TCGA-A2-A0CX BRIP1 SNP Missense_Mutation 17 59876540 C G 29 96 BRCA TCGA-A2-A0CX TLK2 SNP Missense_Mutation 17 60654101 G C 33 100 BRCA TCGA-A2-A0CX DDX5 SNP Silent 17 62499308 T G 56 62 BRCA TCGA-A2-A0CX TP53 SNP Missense_Mutation 17 7577121 G A 38 65 BRCA TCGA-A2-A0CX PER1 SNP Missense_Mutation 17 8053552 G A 41 94 BRCA TCGA-A2-A0CX ZNF750 SNP Missense_Mutation 17 80789153 C T 32 55 BRCA TCGA-A2-A0CX ANKRD30B SNP Splice_Site 18 14763684 G A 33 53 BRCA TCGA-A2-A0CX CABYR SNP Nonsense_Mutation 18 21736510 G T 33 35 BRCA TCGA-A2-A0CX CCDC102B SNP Missense_Mutation 18 66504023 G A 37 51 BRCA TCGA-A2-A0CX DNM2 SNP Missense_Mutation 19 10935742 G A 37 97 BRCA TCGA-A2-A0CX RGL3 SNP Nonsense_Mutation 19 11526649 G A 38 50 BRCA TCGA-A2-A0CX CNN1 SNP Missense_Mutation 19 11657670 C G 29 70 BRCA TCGA-A2-A0CX IL27RA SNP Silent 19 14150608 C T 23 32 BRCA TCGA-A2-A0CX MED26 SNP Silent 19 16687332 G A 33 57 BRCA TCGA-A2-A0CX PDE4C SNP Missense_Mutation 19 18328995 G T 47 93 BRCA TCGA-A2-A0CX ZNF208 SNP Missense_Mutation 19 22154006 C G 30 65 BRCA TCGA-A2-A0CX SNP Silent 19 34583760 G A 45 51 BRCA TCGA-A2-A0CX MAP3K10 SNP Missense_Mutation 19 40704438 T A 62 87 BRCA TCGA-A2-A0CX CIC SNP Nonsense_Mutation 19 42791325 G T 41 63 BRCA TCGA-A2-A0CX LIPE SNP Splice_site 19 42910313 C T 21 92 BRCA TCGA-A2-A0CX CD3EAP SNP Missense_Mutation 19 45912334 G A 33 49 BRCA TCGA-A2-A0CX ERCC1 SNP Missense_Mutation 19 45920148 G C 43 90 BRCA TCGA-A2-A0CX KPTN SNP Missense_Mutation 19 47986455 C T 30 94 BRCA TCGA-A2-A0CX CACNG6 SNP Missense_Mutation 19 54502978 G A 44 70 BRCA TCGA-A2-A0CX VSTM1 SNP Missense_Mutation 19 54545444 G A 45 67 BRCA TCGA-A2-A0CX NLRP11 SNP Missense_Mutation 19 56321506 G C 33 47 BRCA TCGA-A2-A0CX NLRP4 SNP Silent 19 56363563 C G 29 52 BRCA TCGA-A2-A0CX NLRP4 SNP Missense_Mutation 19 56363675 C G 29 53 BRCA TCGA-A2-A0CX NLRP8 SNP Missense_Mutation 19 56459312 C T 29 61 BRCA TCGA-A2-A0CX ZRANB3 SNP Missense_Mutation 2 136103162 C T 32 83 BRCA TCGA-A2-A0CX SCN7A SNP Missense_Mutation 2 167330770 T C 49 47 BRCA TCGA-A2-A0CX PPIG SNP Missense_Mutation 2 170488421 G C 33 95 BRCA TCGA-A2-A0CX METTL5 SNP Missense_Mutation 2 170672003 C G 32 58 BRCA TCGA-A2-A0CX AGPS SNP Missense_Mutation 2 178301510 G A 45 93 BRCA TCGA-A2-A0CX SSFA2 SNP Missense_Mutation 2 182787116 G A 45 75 BRCA TCGA-A2-A0CX FAM171B SNP Missense_Mutation 2 187627333 C G 24 99 BRCA TCGA-A2-A0CX BMPR2 SNP Silent 2 203383637 G A 33 53 BRCA TCGA-A2-A0CX UGT1A4 SNP Missense_Mutation 2 234627740 G A 40 4 BRCA TCGA-A2-A0CX GCKR SNP Missense_Mutation 2 27746251 C T 21 52 BRCA TCGA-A2-A0CX WDR43 SNP Missense_Mutation 2 29152515 C T 19 67 BRCA TCGA-A2-A0CX CDKL4 SNP Missense_Mutation 2 39453083 G C 33 98 BRCA TCGA-A2-A0CX TTC7A SNP Silent 2 47249093 C T 29 56 BRCA TCGA-A2-A0CX MSH6 SNP Missense_Mutation 2 48028268 C T 32 86 BRCA TCGA-A2-A0CX KIAA1841 SNP Missense_Mutation 2 61297579 C G 29 76 BRCA TCGA-A2-A0CX MEIS1 SNP Missense_Mutation 2 66739364 C T 27 72 BRCA TCGA-A2-A0CX CBFA2T2 SNP Missense_Mutation 20 32199100 G A 45 100 BRCA TCGA-A2-A0CX NCOA6 SNP Missense_Mutation 20 33329945 C G 32 81 BRCA TCGA-A2-A0CX MYH7B SNP Silent 20 33575681 C T 31 43 BRCA TCGA-A2-A0CX CEP250 SNP Missense_Mutation 20 34086459 C A 26 48 BRCA TCGA-A2-A0CX PANK2 SNP Missense_Mutation 20 3888593 G C 41 95 BRCA TCGA-A2-A0CX RBPJL SNP Missense_Mutation 20 43943089 G C 45 94 BRCA TCGA-A2-A0CX SLC13A3 SNP Missense_Mutation 20 45212300 G T 33 98 BRCA TCGA-A2-A0CX HAO1 SNP Missense_Mutation 20 7915161 G A 45 95 BRCA TCGA-A2-A0CX BID SNP Missense_Mutation 22 18220787 C T 32 61 BRCA TCGA-A2-A0CX UFD1L SNP Missense_Mutation 22 19462608 G A 37 95 BRCA TCGA-A2-A0CX GGTLC2 SNP Silent 22 22989670 C T 31 51 BRCA TCGA-A2-A0CX EWSR1 SNP Nonsense_Mutation 22 29693828 C T 29 81 BRCA TCGA-A2-A0CX ACO2 SNP Missense_Mutation 22 41865178 C G 31 95 BRCA TCGA-A2-A0CX SBF1 SNP Silent 22 50893515 G A 37 50 BRCA TCGA-A2-A0CX BTK SNP Missense_Mutation 23 100615648 C G 29 83 BRCA TCGA-A2-A0CX TCEAL2 SNP Missense_Mutation 23 101381908 C G 32 47 BRCA TCGA-A2-A0CX GPR112 SNP Silent 23 135487956 G T 45 50 BRCA TCGA-A2-A0CX GPR112 SNP Missense_Mutation 23 135487998 G T 45 50 BRCA TCGA-A2-A0CX MCF2 SNP Silent 23 138727745 G A 33 41 BRCA TCGA-A2-A0CX GEMIN8 SNP Missense_Mutation 23 14038218 C T 31 89 BRCA TCGA-A2-A0CX MAGEC3 SNP Silent 23 140953373 C T 32 37 BRCA TCGA-A2-A0CX TAZ SNP Silent 23 153641864 C T 22 48 BRCA TCGA-A2-A0CX GAB3 SNP Missense_Mutation 23 153940741 C T 30 60 BRCA TCGA-A2-A0CX EFHC2 SNP Missense_Mutation 23 44120503 C T 29 48 BRCA TCGA-A2-A0CX CXorf67 SNP Missense_Mutation 23 51150764 C G 32 54 BRCA TCGA-A2-A0CX KDM5C SNP Missense_Mutation 23 53225908 C T 29 78 BRCA TCGA-A2-A0CX MAGED2 SNP Silent 23 54841887 C T 30 72 BRCA TCGA-A2-A0CX ZXDB SNP Missense_Mutation 23 57620855 G C 33 72 BRCA TCGA-A2-A0CX MED12 SNP Silent 23 70340837 C T 29 69 BRCA TCGA-A2-A0CX ZCCHC5 SNP Silent 23 77913174 G T 43 50 BRCA TCGA-A2-A0CX IMPG2 SNP Missense_Mutation 3 100962906 C T 29 58 BRCA TCGA-A2-A0CX NFKBIZ SNP Missense_Mutation 3 101572097 G C 40 60 BRCA TCGA-A2-A0CX WDR52 SNP Missense_Mutation 3 113098205 G T 33 68 BRCA TCGA-A2-A0CX STXBP5L SNP Missense_Mutation 3 120973931 G A 34 97 BRCA TCGA-A2-A0CX MYLK SNP Silent 3 123419231 G A 40 39 BRCA TCGA-A2-A0CX HEG1 SNP Missense_Mutation 3 124738384 G A 33 61 BRCA TCGA-A2-A0CX ACAD11 SNP Missense_Mutation 3 132297703 G A 33 72 BRCA TCGA-A2-A0CX BTD SNP Missense_Mutation 3 15677106 C G 32 49 BRCA TCGA-A2-A0CX GALNTL2 SNP Silent 3 16216721 G A 45 52 BRCA TCGA-A2-A0CX LRRIQ4 SNP Silent 3 169546579 G A 45 62 BRCA TCGA-A2-A0CX FXR1 SNP Missense_Mutation 3 180694051 G C 33 88 BRCA TCGA-A2-A0CX IL1RAP SNP Missense_Mutation 3 190338161 G C 48 76 BRCA TCGA-A2-A0CX KCNH8 SNP Missense_Mutation 3 19389427 G T 45 100 BRCA TCGA-A2-A0CX DLG1 SNP Nonsense_Mutation 3 196846393 G A 45 92 BRCA TCGA-A2-A0CX NEK10 SNP Nonsense_Mutation 3 27203970 G A 37 65 BRCA TCGA-A2-A0CX EPM2AIP1 SNP Missense_Mutation 3 37032949 G C 45 76 BRCA TCGA-A2-A0CX EPM2AIP1 SNP Missense_Mutation 3 37033064 G A 45 58 BRCA TCGA-A2-A0CX SCN5A SNP Missense_Mutation 3 38645489 C T 31 96 BRCA TCGA-A2-A0CX TMEM89 SNP Nonsense_Mutation 3 48658405 G C 45 74 BRCA TCGA-A2-A0CX WDR82 SNP Missense_Mutation 3 52291511 C A 29 98 BRCA TCGA-A2-A0CX WDR82 SNP Silent 3 52293748 C T 29 52 BRCA TCGA-A2-A0CX APPL1 SNP Missense_Mutation 3 57272085 G A 43 70 BRCA TCGA-A2-A0CX NSUN3 SNP Nonsense_Mutation 3 93803063 C T 29 68 BRCA TCGA-A2-A0CX SEC24D SNP Missense_Mutation 4 119653922 G A 33 83 BRCA TCGA-A2-A0CX LETM1 SNP Missense_Mutation 4 1827346 C T 31 95 BRCA TCGA-A2-A0CX OCIAD1 SNP Missense_Mutation 4 48859365 G C 33 56 BRCA TCGA-A2-A0CX EVC SNP Missense_Mutation 4 5755608 G A 33 58 BRCA TCGA-A2-A0CX CABS1 SNP Missense_Mutation 4 71201101 C A 29 51 BRCA TCGA-A2-A0CX AMBN SNP Missense_Mutation 4 71469002 C G 32 67 BRCA TCGA-A2-A0CX PAQR3 SNP Silent 4 79845078 C T 29 56 BRCA TCGA-A2-A0CX PKD2L2 SNP Missense_Mutation 5 137230240 G A 47 54 BRCA TCGA-A2-A0CX CDC23 SNP Missense_Mutation 5 137542199 C T 29 70 BRCA TCGA-A2-A0CX HSPA9 SNP Nonsense_Mutation 5 137909537 G C 45 87 BRCA TCGA-A2-A0CX PCDHA10 SNP Silent 5 140236992 G A 40 43 BRCA TCGA-A2-A0CX PCDHAC1 SNP Silent 5 140306796 C T 28 61 BRCA TCGA-A2-A0CX PCDHGA2 SNP Silent 5 140719243 G C 37 27 BRCA TCGA-A2-A0CX SH3TC2 SNP Missense_Mutation 5 148427519 G A 41 79 BRCA TCGA-A2-A0CX ABLIM3 SNP Missense_Mutation 5 148629383 C T 31 73 BRCA TCGA-A2-A0CX DCTN4 SNP Splice_site 5 150112930 C T 23 69 BRCA TCGA-A2-A0CX ERGIC1 SNP Silent 5 172341817 C T 31 54 BRCA TCGA-A2-A0CX DDX41 SNP Missense_Mutation 5 176942966 G A 34 100 BRCA TCGA-A2-A0CX SDHA SNP Silent 5 236617 G A 39 38 BRCA TCGA-A2-A0CX ITGA1 SNP Missense_Mutation 5 52214648 G A 41 67 BRCA TCGA-A2-A0CX FASTKD3 SNP Nonsense_Mutation 5 7867557 C A 30 63 BRCA TCGA-A2-A0CX ANKRD34B SNP Missense_Mutation 5 79855559 C G 32 64 BRCA TCGA-A2-A0CX T DEL Frame_Shift_Del 6 166580304 C - 30 96 BRCA TCGA-A2-A0CX HIST1H1D SNP Missense_Mutation 6 26234687 C T 18 76 BRCA TCGA-A2-A0CX TRIM10 SNP Missense_Mutation 6 30126372 G A 33 59 BRCA TCGA-A2-A0CX MDC1 SNP Missense_Mutation 6 30679725 C T 30 72 BRCA TCGA-A2-A0CX BRPF3 SNP Missense_Mutation 6 36168619 G C 33 98 BRCA TCGA-A2-A0CX DST SNP Silent 6 56480618 C T 24 53 BRCA TCGA-A2-A0CX MTO1 SNP Missense_Mutation 6 74171591 G A 37 58 BRCA TCGA-A2-A0CX MDN1 SNP Silent 6 90450019 C T 29 56 BRCA TCGA-A2-A0CX SNP Missense_Mutation 7 100609845 G A 45 64 BRCA TCGA-A2-A0CX C7orf60 SNP Missense_Mutation 7 112461888 C T 29 100 BRCA TCGA-A2-A0CX BPGM SNP Silent 7 134346544 G A 45 60 BRCA TCGA-A2-A0CX TAS2R3 SNP Silent 7 141464471 C T 29 58 BRCA TCGA-A2-A0CX PRSS1 SNP Silent 7 142459748 C T 29 77 BRCA TCGA-A2-A0CX ASIC3 SNP Missense_Mutation 7 150746160 G C 35 77 BRCA TCGA-A2-A0CX CYCS SNP Splice_Site 7 25163747 C G 32 62 BRCA TCGA-A2-A0CX ZNRF2 SNP Missense_Mutation 7 30363299 G A 45 91 BRCA TCGA-A2-A0CX RSPH10B2 SNP Missense_Mutation 7 6836384 G A 37 66 BRCA TCGA-A2-A0CX PION SNP Nonsense_Mutation 7 76984911 G A 45 73 BRCA TCGA-A2-A0CX SAMD9 SNP Missense_Mutation 7 92732577 C T 30 59 BRCA TCGA-A2-A0CX UTP23 SNP Silent 8 117784063 G A 33 92 BRCA TCGA-A2-A0CX FAM83A SNP Missense_Mutation 8 124195521 T A 58 66 BRCA TCGA-A2-A0CX FAM91A1 SNP Missense_Mutation 8 124811880 C T 26 100 BRCA TCGA-A2-A0CX ADCY8 SNP Missense_Mutation 8 132051913 C T 29 99 BRCA TCGA-A2-A0CX C8orf31 SNP Missense_Mutation 8 144124425 G A 45 46 BRCA TCGA-A2-A0CX CDCA2 SNP Missense_Mutation 8 25319710 G C 33 49 BRCA TCGA-A2-A0CX RAB11FIP1 SNP Missense_Mutation 8 37729955 G A 38 53 BRCA TCGA-A2-A0CX HOOK3 SNP Missense_Mutation 8 42852707 G A 33 84 BRCA TCGA-A2-A0CX SULF1 SNP Missense_Mutation 8 70536263 G A 33 83 BRCA TCGA-A2-A0CX INTS8 SNP Silent 8 95877829 C T 32 62 BRCA TCGA-A2-A0CX DBC1 SNP Silent 9 121929782 C G 30 64 BRCA TCGA-A2-A0CX NAIF1 SNP Missense_Mutation 9 130825724 C T 32 77 BRCA TCGA-A2-A0CX DOLK SNP Missense_Mutation 9 131708299 C A 32 51 BRCA TCGA-A2-A0CX NUP188 SNP Silent 9 131768007 C T 31 35 BRCA TCGA-A2-A0CX IFNA17 SNP Silent 9 21227804 C A 29 51 BRCA TCGA-A2-A0CX TPM2 SNP Silent 9 35685268 C T 32 69 BRCA TCGA-A2-A0CX FAM75B SNP Missense_Mutation 9 84676058 T C 52 57 BRCA TCGA-A2-A0CX S1PR3 SNP Missense_Mutation 9 91616909 T C 52 71 BRCA TCGA-A2-A0CZ FAM73A SNP Missense_Mutation 1 78269078 A T 7 66 BRCA TCGA-A2-A0CZ GATA3 INS Frame_Shift_Ins 10 8115874 - T 31 85 BRCA TCGA-A2-A0CZ TMEM132B SNP Nonsense_Mutation 12 125834676 C A 31 62 BRCA TCGA-A2-A0CZ SEMA6D SNP Missense_Mutation 15 48056083 G A 37 100 BRCA TCGA-A2-A0CZ TLN2 SNP Missense_Mutation 15 62999439 T C 59 92 BRCA TCGA-A2-A0CZ ALLC SNP Silent 2 3721691 T C 63 60 BRCA TCGA-A2-A0CZ SPRED2 DEL Frame_Shift_Del 2 65540801 G - 35 79 BRCA TCGA-A2-A0CZ TMC2 SNP Missense_Mutation 20 2582823 G A 40 97 BRCA TCGA-A2-A0CZ XIAP SNP Missense_Mutation 23 123019870 T A 53 54 BRCA TCGA-A2-A0CZ TMPRSS7 SNP Missense_Mutation 3 111766802 G A 34 56 BRCA TCGA-A2-A0CZ PRRC2A DEL Frame_Shift_Del 6 31600113 GG - 47 54 BRCA TCGA-A2-A0CZ HLA-DQB1 SNP Silent 6 32632633 C T 21 62 BRCA TCGA-A2-A0D0 CASQ2 SNP Missense_Mutation 1 116280890 C G 32 87 BRCA TCGA-A2-A0D0 TTF2 SNP Silent 1 117634518 G A 48 65 BRCA TCGA-A2-A0D0 TCHH SNP Missense_Mutation 1 152082308 C T 30 50 BRCA TCGA-A2-A0D0 KCNN3 SNP Missense_Mutation 1 154841540 C G 32 94 BRCA TCGA-A2-A0D0 RGL1 SNP Silent 1 183816895 C T 20 69 BRCA TCGA-A2-A0D0 TPR SNP Missense_Mutation 1 186329484 G C 33 93 BRCA TCGA-A2-A0D0 SRRM1 SNP Silent 1 24975442 G A 46 58 BRCA TCGA-A2-A0D0 KHDRBS1 SNP Splice_Site 1 32502510 G A 35 97 BRCA TCGA-A2-A0D0 ZNF33B SNP Missense_Mutation 10 43088872 T C 56 54 BRCA TCGA-A2-A0D0 C10orf12 SNP Missense_Mutation 10 98743239 G A 46 49 BRCA TCGA-A2-A0D0 PDE3B SNP Missense_Mutation 11 14853233 C G 20 38 BRCA TCGA-A2-A0D0 HRAS SNP Silent 11 534227 G A 40 46 BRCA TCGA-A2-A0D0 TNKS1BP1 SNP Nonsense_Mutation 11 57081323 G C 45 57 BRCA TCGA-A2-A0D0 ATXN2 SNP Silent 12 111926531 T C 54 69 BRCA TCGA-A2-A0D0 HECTD4 SNP Missense_Mutation 12 112607429 C G 17 97 BRCA TCGA-A2-A0D0 FBXW8 SNP Missense_Mutation 12 117465850 G A 38 62 BRCA TCGA-A2-A0D0 SLCO1C1 SNP Silent 12 20885886 G C 43 52 BRCA TCGA-A2-A0D0 STK38L SNP Missense_Mutation 12 27450761 T G 64 54 BRCA TCGA-A2-A0D0 ENSG00000118976 SNP Silent 12 3948638 T A 54 47 BRCA TCGA-A2-A0D0 OR6C2 SNP Missense_Mutation 12 55846550 A G 12 71 BRCA TCGA-A2-A0D0 VAMP1 SNP Splice_Site 12 6574108 C G 32 100 BRCA TCGA-A2-A0D0 PPFIA2 DEL In_Frame_Del 12 81688650 GGAAACCATCTC - 43 49 BRCA TCGA-A2-A0D0 MRPL52 SNP Silent 14 23302667 A G 9 56 BRCA TCGA-A2-A0D0 RBM23 SNP Silent 14 23374450 G A 38 49 BRCA TCGA-A2-A0D0 TYRO3 SNP Missense_Mutation 15 41859670 G A 38 65 BRCA TCGA-A2-A0D0 SMAD6 SNP Missense_Mutation 15 67073661 G A 40 86 BRCA TCGA-A2-A0D0 C16orf62 SNP Missense_Mutation 16 19711758 C G 19 59 BRCA TCGA-A2-A0D0 ABCA3 SNP Missense_Mutation 16 2335631 C T 31 59 BRCA TCGA-A2-A0D0 ABCA3 SNP Missense_Mutation 16 2336930 C G 30 96 BRCA TCGA-A2-A0D0 LOC100289169 SNP Missense_Mutation 16 29063669 C G 32 51 BRCA TCGA-A2-A0D0 SLC12A4 SNP Missense_Mutation 16 67995581 G C 37 100 BRCA TCGA-A2-A0D0 CAMTA2 SNP Silent 17 4872988 C T 26 50 BRCA TCGA-A2-A0D0 SLC2A4 SNP Nonstop_Mutation 17 7187850 T C 55 41 BRCA TCGA-A2-A0D0 MRPS7 SNP Silent 17 73261941 G A 41 55 BRCA TCGA-A2-A0D0 TP53 SNP Nonsense_Mutation 17 7578263 G A 39 67 BRCA TCGA-A2-A0D0 ZNF844 SNP Missense_Mutation 19 12186728 C A 30 26 BRCA TCGA-A2-A0D0 NWD1 SNP Silent 19 16860842 C T 18 61 BRCA TCGA-A2-A0D0 ATP4A SNP Splice_site 19 36046578 T G 56 75 BRCA TCGA-A2-A0D0 VAV1 SNP Missense_Mutation 19 6828862 G A 37 92 BRCA TCGA-A2-A0D0 GREB1 SNP Missense_Mutation 2 11773164 G A 48 57 BRCA TCGA-A2-A0D0 ACVR1 SNP Missense_Mutation 2 158636987 C T 19 77 BRCA TCGA-A2-A0D0 CCDC141 SNP Missense_Mutation 2 179702066 A C 2 43 BRCA TCGA-A2-A0D0 PAX3 SNP Missense_Mutation 2 223065949 T C 52 52 BRCA TCGA-A2-A0D0 SLC5A6 SNP Missense_Mutation 2 27428252 C G 19 70 BRCA TCGA-A2-A0D0 BIRC6 SNP Missense_Mutation 2 32738164 G A 36 100 BRCA TCGA-A2-A0D0 AUP1 SNP Missense_Mutation 2 74754449 C G 29 74 BRCA TCGA-A2-A0D0 POLR1A SNP Silent 2 86327172 G A 38 51 BRCA TCGA-A2-A0D0 POLR1A SNP Silent 2 86327220 G A 40 45 BRCA TCGA-A2-A0D0 ASTL SNP Missense_Mutation 2 96795705 G C 42 63 BRCA TCGA-A2-A0D0 ASXL1 SNP Silent 20 31022690 A G 9 53 BRCA TCGA-A2-A0D0 MYH7B SNP Missense_Mutation 20 33575611 G C 39 73 BRCA TCGA-A2-A0D0 KCNJ15 SNP Missense_Mutation 21 39671648 G T 45 52 BRCA TCGA-A2-A0D0 SMCR7L SNP Missense_Mutation 22 39910045 T C 49 94 BRCA TCGA-A2-A0D0 GPR128 SNP Silent 3 100354667 T G 55 46 BRCA TCGA-A2-A0D0 PARP9 DEL Frame_Shift_Del 3 122274300 T - 52 77 BRCA TCGA-A2-A0D0 CSPG5 SNP Missense_Mutation 3 47618393 C T 31 95 BRCA TCGA-A2-A0D0 FBXW7 SNP Missense_Mutation 4 153247366 C T 31 100 BRCA TCGA-A2-A0D0 SNX25 SNP Splice_Site 4 186263128 A G 3 87 BRCA TCGA-A2-A0D0 FAT1 SNP Missense_Mutation 4 187627851 T C 64 65 BRCA TCGA-A2-A0D0 PLEKHG4B SNP Missense_Mutation 5 182269 C T 30 82 BRCA TCGA-A2-A0D0 ARSK SNP Missense_Mutation 5 94939216 C G 30 41 BRCA TCGA-A2-A0D0 RMND1 SNP Silent 6 151748625 T A 61 50 BRCA TCGA-A2-A0D0 CNKSR3 SNP Silent 6 154754627 C T 23 43 BRCA TCGA-A2-A0D0 COL19A1 SNP Missense_Mutation 6 70866053 G T 43 67 BRCA TCGA-A2-A0D0 KIAA1147 SNP Missense_Mutation 7 141362534 G C 44 54 BRCA TCGA-A2-A0D0 DLC1 SNP Missense_Mutation 8 12956886 C G 22 100 BRCA TCGA-A2-A0D0 FAM49B SNP Missense_Mutation 8 130867866 A C 8 61 BRCA TCGA-A2-A0D0 CHD7 DEL In_Frame_Del 8 61729034 CAGGGC - 25 100 BRCA TCGA-A2-A0D0 SGK3 SNP Silent 8 67748219 T C 51 61 BRCA TCGA-A2-A0D0 ARFGEF1 SNP Nonsense_Mutation 8 68208734 G A 45 99 BRCA TCGA-A2-A0D0 SLC27A4 SNP Missense_Mutation 9 131115713 A G 4 89 BRCA TCGA-A2-A0D0 CA9 SNP Missense_Mutation 9 35675543 C G 21 74 BRCA TCGA-A2-A0D1 SPAG17 SNP Missense_Mutation 1 118624074 T G 51 49 BRCA TCGA-A2-A0D1 FMO5 SNP Missense_Mutation 1 146680607 G T 35 68 BRCA TCGA-A2-A0D1 MKI67 SNP Silent 10 129921415 G A 41 46 BRCA TCGA-A2-A0D1 CRY2 SNP Silent 11 45882531 G A 33 59 BRCA TCGA-A2-A0D1 OR5A1 SNP Nonsense_Mutation 11 59211431 C T 27 53 BRCA TCGA-A2-A0D1 UBC INS Frame_Shift_Ins 12 125396685 - G 51 86 BRCA TCGA-A2-A0D1 KCNA5 SNP Silent 12 5153647 C T 32 53 BRCA TCGA-A2-A0D1 TGM1 SNP Silent 14 24724646 G A 37 45 BRCA TCGA-A2-A0D1 MNAT1 SNP Missense_Mutation 14 61285489 G C 33 71 BRCA TCGA-A2-A0D1 UMOD SNP Missense_Mutation 16 20357504 C A 30 57 BRCA TCGA-A2-A0D1 SALL1 SNP Missense_Mutation 16 51174941 C T 27 65 BRCA TCGA-A2-A0D1 HELZ SNP Missense_Mutation 17 65184713 C T 19 98 BRCA TCGA-A2-A0D1 TP53 SNP Nonsense_Mutation 17 7576855 G A 45 57 BRCA TCGA-A2-A0D1 FFAR1 SNP Missense_Mutation 19 35843061 G A 40 65 BRCA TCGA-A2-A0D1 MUC16 SNP Missense_Mutation 19 9084121 G A 40 43 BRCA TCGA-A2-A0D1 MYT1L SNP Missense_Mutation 2 1843052 C G 32 58 BRCA TCGA-A2-A0D1 HDLBP SNP Missense_Mutation 2 242202140 T C 53 50 BRCA TCGA-A2-A0D1 EML6 SNP Silent 2 55119763 G T 42 51 BRCA TCGA-A2-A0D1 NAT8 SNP Missense_Mutation 2 73868674 G T 46 56 BRCA TCGA-A2-A0D1 BPIFB4 SNP Missense_Mutation 20 31671605 G A 41 58 BRCA TCGA-A2-A0D1 SEZ6L DEL Frame_Shift_Del 22 26771550 CGGCAGCA - 27 93 BRCA TCGA-A2-A0D1 NXF3 SNP Missense_Mutation 23 102339332 G C 41 67 BRCA TCGA-A2-A0D1 IDH3G SNP Missense_Mutation 23 153055671 A G 7 63 BRCA TCGA-A2-A0D1 PDHA1 SNP Silent 23 19371264 C T 19 51 BRCA TCGA-A2-A0D1 SLC7A3 SNP Silent 23 70149701 G A 38 41 BRCA TCGA-A2-A0D1 PLCL2 SNP Missense_Mutation 3 17053177 A T 12 91 BRCA TCGA-A2-A0D1 PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-A2-A0D1 XCR1 SNP Missense_Mutation 3 46063416 C G 32 51 BRCA TCGA-A2-A0D1 DDIT4L SNP Silent 4 101108852 T C 55 54 BRCA TCGA-A2-A0D1 USP53 SNP Silent 4 120181041 A G 14 47 BRCA TCGA-A2-A0D1 MAML3 SNP Silent 4 140811603 G A 45 75 BRCA TCGA-A2-A0D1 ARHGAP10 SNP Silent 4 148985600 G A 40 21 BRCA TCGA-A2-A0D1 PDE6A SNP Silent 5 149310672 G A 41 61 BRCA TCGA-A2-A0D1 GPR98 SNP Nonsense_Mutation 5 90052316 G T 45 53 BRCA TCGA-A2-A0D1 ACAT2 SNP Silent 6 160189620 T A 58 38 BRCA TCGA-A2-A0D1 IGF2R SNP Silent 6 160489290 T C 55 43 BRCA TCGA-A2-A0D1 RNF133 SNP Silent 7 122338268 T G 58 40 BRCA TCGA-A2-A0D1 PRRT4 SNP Missense_Mutation 7 127999474 G A 40 75 BRCA TCGA-A2-A0D1 ENSG00000185040 SNP Missense_Mutation 7 76169673 G C 33 54 BRCA TCGA-A2-A0D1 LRP12 SNP Missense_Mutation 8 105503535 G A 41 99 BRCA TCGA-A2-A0D1 C8orf40 SNP Missense_Mutation 8 42407725 G A 45 78 BRCA TCGA-A2-A0D1 DCAF4L2 SNP Missense_Mutation 8 88885215 C T 19 53 BRCA TCGA-A2-A0D1 GRIN1 SNP Missense_Mutation 9 140052856 G C 41 88 BRCA TCGA-A2-A0D1 UNC13B SNP Missense_Mutation 9 35231138 C T 18 96 BRCA TCGA-A2-A0D1 KIAA2026 SNP Silent 9 6007235 G A 34 67 BRCA TCGA-A2-A0D2 DAP3 SNP Missense_Mutation 1 155707956 G A 33 73 BRCA TCGA-A2-A0D2 TTC24 DEL In_Frame_Del 1 156551729 GGCCGCAGCCCT - 43 73 BRCA TCGA-A2-A0D2 CD46 SNP Splice_Site 1 207940997 G C 44 56 BRCA TCGA-A2-A0D2 CHRM3 SNP Silent 1 240071942 G T 41 49 BRCA TCGA-A2-A0D2 AHCTF1 SNP Silent 1 247014469 C G 17 51 BRCA TCGA-A2-A0D2 MSH4 SNP Silent 1 76365305 T C 52 55 BRCA TCGA-A2-A0D2 LRRC8C SNP Missense_Mutation 1 90178433 G C 33 70 BRCA TCGA-A2-A0D2 BCAR3 SNP Missense_Mutation 1 94054925 G T 33 96 BRCA TCGA-A2-A0D2 SLC39A12 SNP Missense_Mutation 10 18292185 G T 47 47 BRCA TCGA-A2-A0D2 TET1 SNP Silent 10 70406740 A G 2 45 BRCA TCGA-A2-A0D2 CARD17 SNP Missense_Mutation 11 104971342 G T 34 41 BRCA TCGA-A2-A0D2 ROBO3 SNP Silent 11 124742417 C T 30 54 BRCA TCGA-A2-A0D2 DDX25 SNP Splice_site 11 125787146 G A 35 81 BRCA TCGA-A2-A0D2 OR52R1 SNP Missense_Mutation 11 4825420 A T 11 63 BRCA TCGA-A2-A0D2 OR10Q1 SNP Missense_Mutation 11 57995968 T A 49 66 BRCA TCGA-A2-A0D2 GLYATL2 SNP Missense_Mutation 11 58602060 A G 13 48 BRCA TCGA-A2-A0D2 KCNK4 DEL Frame_Shift_Del 11 64064433 CAGCGCCTTCTTTTTCT - 25 55 BRCA TCGA-A2-A0D2 SUV420H1 SNP Missense_Mutation 11 67926140 G T 47 96 BRCA TCGA-A2-A0D2 PAAF1 SNP Silent 11 73627700 T C 58 52 BRCA TCGA-A2-A0D2 PHC1 SNP Silent 12 9085307 T C 53 40 BRCA TCGA-A2-A0D2 ACTN1 SNP Silent 14 69343865 G C 38 27 BRCA TCGA-A2-A0D2 MAPK6 SNP Missense_Mutation 15 52338804 G C 33 85 BRCA TCGA-A2-A0D2 WDR93 SNP Missense_Mutation 15 90278750 G A 48 59 BRCA TCGA-A2-A0D2 VWA3A SNP Missense_Mutation 16 22128094 C T 32 57 BRCA TCGA-A2-A0D2 PRKCB SNP Silent 16 24135278 G C 46 55 BRCA TCGA-A2-A0D2 SEC14L5 DEL Frame_Shift_Del 16 5058578 G - 35 50 BRCA TCGA-A2-A0D2 PRDM7 SNP Missense_Mutation 16 90124710 C G 18 51 BRCA TCGA-A2-A0D2 MYH8 SNP Missense_Mutation 17 10297607 G A 34 77 BRCA TCGA-A2-A0D2 SRCIN1 SNP Missense_Mutation 17 36700173 A C 6 62 BRCA TCGA-A2-A0D2 ANKFY1 SNP Missense_Mutation 17 4120392 A G 8 70 BRCA TCGA-A2-A0D2 TANC2 SNP Missense_Mutation 17 61473132 G T 48 100 BRCA TCGA-A2-A0D2 TP53 DEL Frame_Shift_Del 17 7576885 TCTTCTTTGGC - 62 70 BRCA TCGA-A2-A0D2 TBCD SNP Missense_Mutation 17 80765535 C T 25 85 BRCA TCGA-A2-A0D2 FHOD3 SNP Missense_Mutation 18 34273180 A G 14 74 BRCA TCGA-A2-A0D2 ENSG00000225607 DEL Frame_Shift_Del 19 15881928 AGGCGGCAGGCCCTGCGGAAGCGCCA - 7 57 BRCA TCGA-A2-A0D2 USHBP1 SNP Missense_Mutation 19 17370427 C T 28 48 BRCA TCGA-A2-A0D2 SUGP1 SNP Missense_Mutation 19 19407862 C G 24 43 BRCA TCGA-A2-A0D2 MLL4 SNP Missense_Mutation 19 36229228 G T 41 98 BRCA TCGA-A2-A0D2 SPTBN4 SNP Missense_Mutation 19 41063136 T C 54 85 BRCA TCGA-A2-A0D2 PLIN4 SNP Missense_Mutation 19 4508875 G A 39 75 BRCA TCGA-A2-A0D2 MCOLN1 SNP Missense_Mutation 19 7598649 C G 22 45 BRCA TCGA-A2-A0D2 FBN3 SNP Silent 19 8140058 A G 8 46 BRCA TCGA-A2-A0D2 SCN3A SNP Missense_Mutation 2 165997183 G C 35 99 BRCA TCGA-A2-A0D2 PUM2 SNP Missense_Mutation 2 20483175 G C 36 100 BRCA TCGA-A2-A0D2 PIKFYVE SNP Missense_Mutation 2 209190734 C G 32 79 BRCA TCGA-A2-A0D2 DNMT3A SNP Missense_Mutation 2 25463541 G C 41 98 BRCA TCGA-A2-A0D2 CAPN13 SNP Missense_Mutation 2 30987066 C T 30 49 BRCA TCGA-A2-A0D2 C20orf94 SNP Silent 20 10603922 C T 18 57 BRCA TCGA-A2-A0D2 PREX1 SNP Missense_Mutation 20 47309216 C T 21 100 BRCA TCGA-A2-A0D2 TH1L SNP Missense_Mutation 20 57562859 C A 20 81 BRCA TCGA-A2-A0D2 ANGPT4 SNP Missense_Mutation 20 865877 G C 34 60 BRCA TCGA-A2-A0D2 C21orf128 SNP Missense_Mutation 21 43523920 C G 22 53 BRCA TCGA-A2-A0D2 MOV10L1 SNP Missense_Mutation 22 50580592 C G 22 67 BRCA TCGA-A2-A0D2 LAMP2 SNP Silent 23 119562414 G C 34 72 BRCA TCGA-A2-A0D2 MAGEC1 DEL Frame_Shift_Del 23 140993605 GCTTTATTGAGTATTTTCCA - 46 58 BRCA TCGA-A2-A0D2 PDZD4 SNP Silent 23 153068871 G A 40 43 BRCA TCGA-A2-A0D2 RPGR SNP Missense_Mutation 23 38160592 G A 37 95 BRCA TCGA-A2-A0D2 PAGE5 SNP Missense_Mutation 23 55248235 G C 35 57 BRCA TCGA-A2-A0D2 MTMR8 SNP Missense_Mutation 23 63548744 C A 21 51 BRCA TCGA-A2-A0D2 AWAT1 SNP Missense_Mutation 23 69458163 A T 3 66 BRCA TCGA-A2-A0D2 ZCCHC5 SNP Silent 23 77913570 C T 27 47 BRCA TCGA-A2-A0D2 CD86 SNP Silent 3 121825277 G C 37 47 BRCA TCGA-A2-A0D2 CASR SNP Missense_Mutation 3 122002718 C A 17 66 BRCA TCGA-A2-A0D2 KLHL6 SNP Missense_Mutation 3 183225935 G A 40 56 BRCA TCGA-A2-A0D2 TP63 SNP Silent 3 189608638 C T 21 84 BRCA TCGA-A2-A0D2 SLC25A38 SNP Missense_Mutation 3 39436042 G A 42 67 BRCA TCGA-A2-A0D2 PBRM1 SNP Missense_Mutation 3 52651338 C T 29 87 BRCA TCGA-A2-A0D2 INPP4B SNP Missense_Mutation 4 143129611 G C 46 90 BRCA TCGA-A2-A0D2 FRAS1 SNP Missense_Mutation 4 79353539 G C 33 53 BRCA TCGA-A2-A0D2 DAB2 SNP Missense_Mutation 5 39377250 C T 21 62 BRCA TCGA-A2-A0D2 CENPK SNP Silent 5 64850678 A G 16 57 BRCA TCGA-A2-A0D2 GCNT4 SNP Missense_Mutation 5 74325681 G C 36 62 BRCA TCGA-A2-A0D2 HIST1H2BA DEL In_Frame_Del 6 25727483 GCACCAAGGCTGTCACTAAGTACACCA - 42 92 BRCA TCGA-A2-A0D2 LRFN2 SNP Missense_Mutation 6 40400824 G A 38 80 BRCA TCGA-A2-A0D2 PTK7 SNP Missense_Mutation 6 43100201 C A 28 72 BRCA TCGA-A2-A0D2 TDRD6 SNP Missense_Mutation 6 46659314 C T 28 74 BRCA TCGA-A2-A0D2 COL9A1 SNP Missense_Mutation 6 70981371 C T 19 58 BRCA TCGA-A2-A0D2 IMPG1 SNP Missense_Mutation 6 76657075 T C 63 53 BRCA TCGA-A2-A0D2 RELN SNP Missense_Mutation 7 103113311 C T 22 93 BRCA TCGA-A2-A0D2 DOCK4 SNP Missense_Mutation 7 111846181 T C 57 75 BRCA TCGA-A2-A0D2 HDAC9 SNP Missense_Mutation 7 19035653 G A 47 69 BRCA TCGA-A2-A0D2 CARD11 SNP Missense_Mutation 7 2959046 C G 32 70 BRCA TCGA-A2-A0D2 GHRHR SNP Missense_Mutation 7 31014652 C G 31 42 BRCA TCGA-A2-A0D2 ZFP41 SNP Missense_Mutation 8 144332310 G C 33 52 BRCA TCGA-A2-A0D2 IDO2 SNP Silent 8 39871156 C T 23 13 BRCA TCGA-A2-A0D2 TRIM55 SNP Nonsense_Mutation 8 67062591 C G 29 100 BRCA TCGA-A2-A0D3 NOTCH2 SNP Silent 1 120458202 G A 46 48 BRCA TCGA-A2-A0D3 DUSP27 SNP Silent 1 167097767 C T 19 38 BRCA TCGA-A2-A0D3 C1orf129 SNP Nonsense_Mutation 1 170955837 G T 37 49 BRCA TCGA-A2-A0D3 CEP350 SNP Missense_Mutation 1 180047624 G T 36 37 BRCA TCGA-A2-A0D3 NLRP3 SNP Nonsense_Mutation 1 247588840 C T 23 54 BRCA TCGA-A2-A0D3 PTPRU SNP Missense_Mutation 1 29651722 G A 39 93 BRCA TCGA-A2-A0D3 EVI5 SNP Silent 1 93163492 A G 16 63 BRCA TCGA-A2-A0D3 GATA3 INS Frame_Shift_Ins 10 8111543 - T 32 43 BRCA TCGA-A2-A0D3 PKNOX2 SNP Missense_Mutation 11 125301239 C T 19 76 BRCA TCGA-A2-A0D3 C11orf45 SNP Silent 11 128772497 G T 34 45 BRCA TCGA-A2-A0D3 ADAMTS15 SNP Silent 11 130318913 C T 23 50 BRCA TCGA-A2-A0D3 GPHA2 SNP Silent 11 64702634 T A 55 37 BRCA TCGA-A2-A0D3 DDX12 SNP Missense_Mutation 12 9578178 C T 31 75 BRCA TCGA-A2-A0D3 LTA4H SNP Silent 12 96409430 G A 38 58 BRCA TCGA-A2-A0D3 AHNAK2 SNP Silent 14 105417114 G A 40 31 BRCA TCGA-A2-A0D3 POLI SNP Missense_Mutation 18 51820754 T G 53 58 BRCA TCGA-A2-A0D3 ZFP30 DEL Frame_Shift_Del 19 38126198 CATTCCTT - 17 93 BRCA TCGA-A2-A0D3 MYH14 SNP Missense_Mutation 19 50810349 C T 27 55 BRCA TCGA-A2-A0D3 MARCH4 SNP Silent 2 217234735 G A 38 53 BRCA TCGA-A2-A0D3 CXCR1 SNP Missense_Mutation 2 219029099 C T 27 69 BRCA TCGA-A2-A0D3 TFIP11 SNP Missense_Mutation 22 26895384 C T 29 79 BRCA TCGA-A2-A0D3 MAGEC3 SNP Missense_Mutation 23 140985038 C A 31 49 BRCA TCGA-A2-A0D3 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A2-A0D3 GRIA2 SNP Silent 4 158262491 C T 20 88 BRCA TCGA-A2-A0D3 IL17B SNP Missense_Mutation 5 148756510 G A 38 52 BRCA TCGA-A2-A0D3 BAI3 SNP Nonsense_Mutation 6 70070787 C T 23 56 BRCA TCGA-A2-A0D3 DNAJC2 DEL Frame_Shift_Del 7 102960101 GA - 45 50 BRCA TCGA-A2-A0D3 SLC13A1 SNP Missense_Mutation 7 122768936 G A 43 89 BRCA TCGA-A2-A0D3 MLL3 DEL Frame_Shift_Del 7 152012381 G - 35 63 BRCA TCGA-A2-A0D3 SYBU SNP Missense_Mutation 8 110588052 A C 1 91 BRCA TCGA-A2-A0D3 SLC18A1 SNP Missense_Mutation 8 20005189 C A 30 97 BRCA TCGA-A2-A0D3 NRG1 SNP Missense_Mutation 8 32613947 G A 40 81 BRCA TCGA-A2-A0D4 CD1C SNP Missense_Mutation 1 158261173 G T 36 44 BRCA TCGA-A2-A0D4 DNHD1 SNP Missense_Mutation 11 6592127 G A 38 51 BRCA TCGA-A2-A0D4 N4BP2L2 SNP Missense_Mutation 13 33017767 G A 46 51 BRCA TCGA-A2-A0D4 TEP1 SNP Missense_Mutation 14 20876336 A T 7 71 BRCA TCGA-A2-A0D4 KTN1 SNP Silent 14 56114770 G A 33 61 BRCA TCGA-A2-A0D4 KIAA0586 SNP Missense_Mutation 14 58941356 C G 32 62 BRCA TCGA-A2-A0D4 SLC24A4 SNP Missense_Mutation 14 92958577 C T 28 83 BRCA TCGA-A2-A0D4 IQCH SNP Missense_Mutation 15 67782366 T C 61 73 BRCA TCGA-A2-A0D4 SPTBN4 SNP Missense_Mutation 19 41038673 G A 37 83 BRCA TCGA-A2-A0D4 SLC4A10 SNP Silent 2 162711543 T G 53 48 BRCA TCGA-A2-A0D4 NBEAL1 SNP Missense_Mutation 2 204001452 G T 41 67 BRCA TCGA-A2-A0D4 KIF3C SNP Missense_Mutation 2 26204266 C T 26 97 BRCA TCGA-A2-A0D4 GUCY2F SNP Missense_Mutation 23 108718511 C T 19 89 BRCA TCGA-A2-A0D4 ALAS2 SNP Missense_Mutation 23 55039950 G T 44 68 BRCA TCGA-A2-A0D4 ZCCHC5 SNP Missense_Mutation 23 77912638 T A 60 54 BRCA TCGA-A2-A0D4 PABPC5 SNP Missense_Mutation 23 90690698 C A 28 91 BRCA TCGA-A2-A0D4 IQCB1 SNP Missense_Mutation 3 121508941 T C 49 59 BRCA TCGA-A2-A0D4 CHST2 DEL Frame_Shift_Del 3 142841031 T - 51 89 BRCA TCGA-A2-A0D4 PDS5A DEL Frame_Shift_Del 4 39839575 TCCTGACCCACTGCAGCTCTCTTCCT - 54 79 BRCA TCGA-A2-A0D4 PCDHA5 SNP Missense_Mutation 5 140202883 C T 31 62 BRCA TCGA-A2-A0D4 MED23 SNP Missense_Mutation 6 131926396 C A 20 100 BRCA TCGA-A2-A0D4 KIAA0319 INS Splice_Site 6 24566822 - A 29 57 BRCA TCGA-A2-A0D4 MUC17 SNP Silent 7 100676653 T A 54 45 BRCA TCGA-A2-A0D4 CPA1 SNP Silent 7 130027699 C T 17 52 BRCA TCGA-A2-A0EM CPN1 SNP Missense_Mutation 10 101835672 G A 42 55 BRCA TCGA-A2-A0EM MUC2 INS In_Frame_Ins 11 1092598 - CAA 30 77 BRCA TCGA-A2-A0EM TPP1 SNP Splice_site 11 6638532 C T 21 89 BRCA TCGA-A2-A0EM MYO7A SNP Missense_Mutation 11 76910861 C A 22 86 BRCA TCGA-A2-A0EM RCOR1 SNP Missense_Mutation 14 103167650 G T 47 100 BRCA TCGA-A2-A0EM PPP1R13B SNP Missense_Mutation 14 104224078 G T 47 73 BRCA TCGA-A2-A0EM MAGEL2 SNP Nonsense_Mutation 15 23890165 G A 46 70 BRCA TCGA-A2-A0EM MYEF2 SNP Nonsense_Mutation 15 48441260 C T 26 98 BRCA TCGA-A2-A0EM HSP90AB4P SNP Missense_Mutation 15 58983683 C G 20 53 BRCA TCGA-A2-A0EM FGF11 SNP Missense_Mutation 17 7346061 G A 37 68 BRCA TCGA-A2-A0EM CCDC105 SNP Missense_Mutation 19 15131381 C T 21 60 BRCA TCGA-A2-A0EM XIRP2 SNP Missense_Mutation 2 168115850 A T 7 55 BRCA TCGA-A2-A0EM PLCB4 SNP Missense_Mutation 20 9401989 G A 40 100 BRCA TCGA-A2-A0EM ZNF70 SNP Missense_Mutation 22 24086804 T C 56 71 BRCA TCGA-A2-A0EM GPR143 SNP Missense_Mutation 23 9716674 C T 26 90 BRCA TCGA-A2-A0EM PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA TCGA-A2-A0EM GALNT10 SNP Missense_Mutation 5 153760044 C G 23 100 BRCA TCGA-A2-A0EM HRH2 SNP Missense_Mutation 5 175110783 G A 39 85 BRCA TCGA-A2-A0EM SGCZ DEL Frame_Shift_Del 8 14412415 T - 57 50 BRCA TCGA-A2-A0EM COL27A1 SNP Missense_Mutation 9 117004482 A T 8 57 BRCA TCGA-A2-A0EN ANP32E SNP Splice_site 1 150201406 C T 24 48 BRCA TCGA-A2-A0EN SIPA1L2 SNP Silent 1 232607134 G C 39 14 BRCA TCGA-A2-A0EN ZP4 SNP Missense_Mutation 1 238050144 C T 29 63 BRCA TCGA-A2-A0EN CEP104 SNP Missense_Mutation 1 3750452 G A 39 65 BRCA TCGA-A2-A0EN LRRC7 SNP Missense_Mutation 1 70505012 G T 44 97 BRCA TCGA-A2-A0EN MYO7A SNP Missense_Mutation 11 76900501 G A 37 97 BRCA TCGA-A2-A0EN TMEM132B SNP Silent 12 125834884 T A 54 49 BRCA TCGA-A2-A0EN MTUS2 SNP Silent 13 29933490 G A 46 55 BRCA TCGA-A2-A0EN OLFM4 SNP Silent 13 53603067 C T 23 40 BRCA TCGA-A2-A0EN ZBTB25 SNP Missense_Mutation 14 64954287 G A 43 75 BRCA TCGA-A2-A0EN MYH8 SNP Silent 17 10318470 A G 14 43 BRCA TCGA-A2-A0EN TBX4 SNP Nonsense_Mutation 17 59560293 C T 27 62 BRCA TCGA-A2-A0EN ARMC7 SNP Silent 17 73106586 C T 31 51 BRCA TCGA-A2-A0EN SUGP1 SNP Missense_Mutation 19 19387471 G A 40 53 BRCA TCGA-A2-A0EN LCT SNP Missense_Mutation 2 136561583 C T 30 100 BRCA TCGA-A2-A0EN TTN SNP Missense_Mutation 2 179456460 G T 36 89 BRCA TCGA-A2-A0EN ANKZF1 SNP Missense_Mutation 2 220100548 G A 40 49 BRCA TCGA-A2-A0EN PSMD1 INS Frame_Shift_Ins 2 231937097 - A 49 53 BRCA TCGA-A2-A0EN NLRC4 SNP Missense_Mutation 2 32475353 G A 35 55 BRCA TCGA-A2-A0EN RBM39 SNP Missense_Mutation 20 34302208 G T 34 85 BRCA TCGA-A2-A0EN C22orf30 SNP Silent 22 32072739 G A 35 48 BRCA TCGA-A2-A0EN PHEX SNP Missense_Mutation 23 22231059 G A 43 91 BRCA TCGA-A2-A0EN FAM47B SNP Missense_Mutation 23 34961961 C G 20 68 BRCA TCGA-A2-A0EN IL2RG SNP Missense_Mutation 23 70330750 T A 49 73 BRCA TCGA-A2-A0EN SHROOM2 SNP Missense_Mutation 23 9862709 C T 26 51 BRCA TCGA-A2-A0EN RASA2 SNP Splice_Site 3 141292064 G T 44 98 BRCA TCGA-A2-A0EN PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A2-A0EN PIK3CA SNP Missense_Mutation 3 178952139 A T 8 89 BRCA TCGA-A2-A0EN MUC4 SNP Missense_Mutation 3 195489057 C A 31 70 BRCA TCGA-A2-A0EN MSX2 SNP Missense_Mutation 5 174156285 C T 30 100 BRCA TCGA-A2-A0EN RAB24 SNP Missense_Mutation 5 176728751 T C 51 87 BRCA TCGA-A2-A0EN AASS SNP Missense_Mutation 7 121756793 G A 40 100 BRCA TCGA-A2-A0EN MLL3 DEL Frame_Shift_Del 7 151859457 T - 52 49 BRCA TCGA-A2-A0EN KIAA0415 SNP Splice_site 7 4827786 T A 58 48 BRCA TCGA-A2-A0EN SLC29A4 SNP Missense_Mutation 7 5327487 G A 40 58 BRCA TCGA-A2-A0EN OPRK1 SNP Missense_Mutation 8 54142147 C T 19 49 BRCA TCGA-A2-A0EO HIST2H2BE SNP Missense_Mutation 1 149857851 C T 31 100 BRCA TCGA-A2-A0EO MR1 SNP Nonsense_Mutation 1 181021547 C T 29 68 BRCA TCGA-A2-A0EO LAPTM5 SNP Missense_Mutation 1 31206746 C T 31 75 BRCA TCGA-A2-A0EO PNLIPRP3 SNP Silent 10 118202578 G A 39 43 BRCA TCGA-A2-A0EO PLA2G12B SNP Silent 10 74714297 G A 36 58 BRCA TCGA-A2-A0EO DEAF1 SNP Missense_Mutation 11 687941 C A 23 93 BRCA TCGA-A2-A0EO PDE3A SNP Missense_Mutation 12 20782980 G A 44 53 BRCA TCGA-A2-A0EO RAD51AP1 SNP Missense_Mutation 12 4662226 G T 36 61 BRCA TCGA-A2-A0EO SLC25A30 SNP Silent 13 45971426 T A 63 48 BRCA TCGA-A2-A0EO MGA SNP Silent 15 42041007 A T 5 59 BRCA TCGA-A2-A0EO GPR97 SNP Missense_Mutation 16 57719640 G A 44 61 BRCA TCGA-A2-A0EO CBFB SNP Missense_Mutation 16 67100696 G A 34 97 BRCA TCGA-A2-A0EO MYH13 SNP Missense_Mutation 17 10236473 G A 38 72 BRCA TCGA-A2-A0EO GPS2 INS In_Frame_Ins 17 7217829 - ATT 45 75 BRCA TCGA-A2-A0EO ELP2 SNP Silent 18 33722826 C T 26 51 BRCA TCGA-A2-A0EO ZNF471 SNP Missense_Mutation 19 57036477 A T 4 47 BRCA TCGA-A2-A0EO DPP10 SNP Silent 2 116497433 G A 40 42 BRCA TCGA-A2-A0EO SRBD1 SNP Missense_Mutation 2 45704138 C T 17 76 BRCA TCGA-A2-A0EO CCNL1 DEL In_Frame_Del 3 156877732 GAAACTTCC - 45 51 BRCA TCGA-A2-A0EO PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-A2-A0EO TRAK1 SNP Missense_Mutation 3 42226205 G A 38 97 BRCA TCGA-A2-A0EO ENPEP DEL Frame_Shift_Del 4 111397624 T - 51 45 BRCA TCGA-A2-A0EO SH3D19 SNP Missense_Mutation 4 152086824 G A 48 57 BRCA TCGA-A2-A0EO GJA1 SNP Missense_Mutation 6 121768373 T G 63 71 BRCA TCGA-A2-A0EO RDBP INS Frame_Shift_Ins 6 31923041 - A 41 52 BRCA TCGA-A2-A0EQ FAM20B SNP Silent 1 179013003 C T 31 44 BRCA TCGA-A2-A0EQ USH2A SNP Silent 1 216371889 C T 29 51 BRCA TCGA-A2-A0EQ WDR26 SNP Silent 1 224592213 A G 16 46 BRCA TCGA-A2-A0EQ ITPKB SNP Missense_Mutation 1 226924234 C G 32 42 BRCA TCGA-A2-A0EQ C1orf101 SNP Missense_Mutation 1 244735979 C G 32 50 BRCA TCGA-A2-A0EQ SDC3 SNP Silent 1 31349951 C T 23 36 BRCA TCGA-A2-A0EQ LCK SNP Silent 1 32741215 C T 30 45 BRCA TCGA-A2-A0EQ GBP7 SNP Missense_Mutation 1 89613445 C G 32 49 BRCA TCGA-A2-A0EQ OR6X1 SNP Missense_Mutation 11 123624853 C A 25 92 BRCA TCGA-A2-A0EQ E2F8 SNP Missense_Mutation 11 19251216 C T 32 66 BRCA TCGA-A2-A0EQ PAMR1 SNP Missense_Mutation 11 35454330 G C 33 54 BRCA TCGA-A2-A0EQ CHRNA10 SNP Nonsense_Mutation 11 3687755 G C 45 99 BRCA TCGA-A2-A0EQ TRIM68 SNP Silent 11 4626420 C T 29 43 BRCA TCGA-A2-A0EQ PITPNM1 SNP Missense_Mutation 11 67266143 C T 29 79 BRCA TCGA-A2-A0EQ XRRA1 SNP Silent 11 74559241 C G 29 38 BRCA TCGA-A2-A0EQ GUCY2C SNP Missense_Mutation 12 14804406 C A 23 97 BRCA TCGA-A2-A0EQ CELA1 SNP Missense_Mutation 12 51736377 C T 28 52 BRCA TCGA-A2-A0EQ GPC5 SNP Missense_Mutation 13 92345967 C A 17 61 BRCA TCGA-A2-A0EQ PSMA3 SNP Splice_Site 14 58727739 G A 40 91 BRCA TCGA-A2-A0EQ TTLL5 SNP Missense_Mutation 14 76147917 C G 19 69 BRCA TCGA-A2-A0EQ MAGEL2 SNP Missense_Mutation 15 23889829 C T 30 53 BRCA TCGA-A2-A0EQ RYR3 SNP Missense_Mutation 15 34156357 G C 45 47 BRCA TCGA-A2-A0EQ FRMD5 SNP Missense_Mutation 15 44166157 G C 45 81 BRCA TCGA-A2-A0EQ CELF6 SNP Missense_Mutation 15 72608235 G C 33 100 BRCA TCGA-A2-A0EQ MCTP2 SNP Missense_Mutation 15 94945238 T C 49 67 BRCA TCGA-A2-A0EQ GNPTG SNP Silent 16 1412632 G A 41 55 BRCA TCGA-A2-A0EQ CCDC64B SNP Missense_Mutation 16 3080989 C A 26 95 BRCA TCGA-A2-A0EQ STAT5B SNP Missense_Mutation 17 40376874 G A 39 95 BRCA TCGA-A2-A0EQ TP53 DEL In_Frame_Del 17 7578443 AGA - 15 76 BRCA TCGA-A2-A0EQ METTL4 SNP Silent 18 2567036 A G 7 53 BRCA TCGA-A2-A0EQ LIPG SNP Silent 18 47110100 G A 45 50 BRCA TCGA-A2-A0EQ WDR7 SNP Missense_Mutation 18 54385213 A G 8 52 BRCA TCGA-A2-A0EQ SMARCA4 SNP Missense_Mutation 19 11097047 C T 28 73 BRCA TCGA-A2-A0EQ DAPK3 SNP Silent 19 3964285 C T 23 23 BRCA TCGA-A2-A0EQ PLD3 SNP Silent 19 40880504 T G 54 52 BRCA TCGA-A2-A0EQ C19orf54 SNP Missense_Mutation 19 41248631 C T 29 69 BRCA TCGA-A2-A0EQ RANBP2 SNP Missense_Mutation 2 109371670 G C 33 50 BRCA TCGA-A2-A0EQ ACVR2A SNP Missense_Mutation 2 148676122 C G 24 79 BRCA TCGA-A2-A0EQ NR4A2 SNP Missense_Mutation 2 157184493 C A 18 100 BRCA TCGA-A2-A0EQ FAM171B SNP Silent 2 187611928 G A 45 50 BRCA TCGA-A2-A0EQ OTOF SNP Missense_Mutation 2 26690299 C G 32 66 BRCA TCGA-A2-A0EQ EPB41L1 SNP Missense_Mutation 20 34763629 G A 45 99 BRCA TCGA-A2-A0EQ RALGAPB SNP Silent 20 37182575 T G 63 49 BRCA TCGA-A2-A0EQ TMEM189-UBE2V1 SNP Missense_Mutation 20 48760108 C T 27 58 BRCA TCGA-A2-A0EQ ZNF217 SNP Missense_Mutation 20 52192934 G A 38 56 BRCA TCGA-A2-A0EQ DYRK1A SNP Missense_Mutation 21 38850492 G C 45 52 BRCA TCGA-A2-A0EQ DSCAM SNP Missense_Mutation 21 41719830 C A 28 86 BRCA TCGA-A2-A0EQ SLC25A18 SNP Missense_Mutation 22 18072980 G A 38 49 BRCA TCGA-A2-A0EQ DNAJB7 SNP Missense_Mutation 22 41257265 T C 60 52 BRCA TCGA-A2-A0EQ MCAT SNP Missense_Mutation 22 43529357 C T 31 58 BRCA TCGA-A2-A0EQ SMC1B SNP Missense_Mutation 22 45782877 A G 6 70 BRCA TCGA-A2-A0EQ STAG2 SNP Missense_Mutation 23 123199793 A G 8 88 BRCA TCGA-A2-A0EQ AFF2 SNP Missense_Mutation 23 147733566 C T 27 53 BRCA TCGA-A2-A0EQ ZNF674 SNP Missense_Mutation 23 46359485 G C 45 46 BRCA TCGA-A2-A0EQ ZNF674 SNP Missense_Mutation 23 46359952 G C 45 39 BRCA TCGA-A2-A0EQ WDR52 SNP Missense_Mutation 3 113049481 A G 4 83 BRCA TCGA-A2-A0EQ MRPS22 SNP Missense_Mutation 3 139071564 G C 47 95 BRCA TCGA-A2-A0EQ PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A2-A0EQ MUC20 SNP Missense_Mutation 3 195453371 A G 9 48 BRCA TCGA-A2-A0EQ DOCK3 DEL Frame_Shift_Del 3 50816143 G - 47 67 BRCA TCGA-A2-A0EQ BAP1 SNP Missense_Mutation 3 52442600 G C 35 69 BRCA TCGA-A2-A0EQ PPP3CA SNP Missense_Mutation 4 101982313 C G 29 100 BRCA TCGA-A2-A0EQ FAT4 SNP Missense_Mutation 4 126238784 C G 20 64 BRCA TCGA-A2-A0EQ EVC2 SNP Silent 4 5564815 G C 45 59 BRCA TCGA-A2-A0EQ KIAA0825 SNP Missense_Mutation 5 93739405 G C 33 64 BRCA TCGA-A2-A0EQ RSPH4A SNP Missense_Mutation 6 116949275 C G 30 75 BRCA TCGA-A2-A0EQ FNDC1 SNP Missense_Mutation 6 159644608 C T 29 99 BRCA TCGA-A2-A0EQ LRRC16A SNP Silent 6 25471408 C T 32 56 BRCA TCGA-A2-A0EQ TRIM38 SNP Missense_Mutation 6 25966837 C G 29 53 BRCA TCGA-A2-A0EQ NKAPL SNP Missense_Mutation 6 28227456 G A 33 54 BRCA TCGA-A2-A0EQ UBR2 SNP Missense_Mutation 6 42571368 T C 61 77 BRCA TCGA-A2-A0EQ EYS SNP Missense_Mutation 6 65301291 G A 37 64 BRCA TCGA-A2-A0EQ EMID2 SNP Missense_Mutation 7 101090994 G C 33 58 BRCA TCGA-A2-A0EQ COPG2 SNP Missense_Mutation 7 130347816 T G 52 50 BRCA TCGA-A2-A0EQ PKD1L1 SNP Missense_Mutation 7 47968840 C T 29 52 BRCA TCGA-A2-A0EQ ZNF479 SNP Missense_Mutation 7 57187675 G T 48 78 BRCA TCGA-A2-A0EQ ADCY8 SNP Missense_Mutation 8 131922104 C A 23 100 BRCA TCGA-A2-A0EQ ADAMDEC1 SNP Silent 8 24249788 G A 34 46 BRCA TCGA-A2-A0EQ MPDZ SNP Missense_Mutation 9 13168444 C T 29 84 BRCA TCGA-A2-A0EQ TUBB4B SNP Missense_Mutation 9 140137952 G A 46 85 BRCA TCGA-A2-A0ER NPHP4 SNP Missense_Mutation 1 5987774 G A 40 51 BRCA TCGA-A2-A0ER HVCN1 SNP Missense_Mutation 12 111089194 T G 52 54 BRCA TCGA-A2-A0ER RBM19 SNP Missense_Mutation 12 114352823 G A 38 84 BRCA TCGA-A2-A0ER SIPA1L1 SNP Silent 14 72138130 A G 11 58 BRCA TCGA-A2-A0ER CCDC33 SNP Silent 15 74622637 C T 26 37 BRCA TCGA-A2-A0ER ACSM2B SNP Missense_Mutation 16 20576133 G T 44 57 BRCA TCGA-A2-A0ER ZNF331 SNP Silent 19 54081068 G A 33 61 BRCA TCGA-A2-A0ER STEAP3 SNP Missense_Mutation 2 120012348 C T 19 62 BRCA TCGA-A2-A0ER YSK4 SNP Missense_Mutation 2 135745540 C T 25 54 BRCA TCGA-A2-A0ER NCKAP1 SNP Splice_site 2 183848015 T C 56 91 BRCA TCGA-A2-A0ER SLC11A1 SNP Missense_Mutation 2 219249939 G A 40 83 BRCA TCGA-A2-A0ER TTC7A SNP Missense_Mutation 2 47278894 G A 39 52 BRCA TCGA-A2-A0ER HUWE1 SNP Missense_Mutation 23 53570824 C T 23 90 BRCA TCGA-A2-A0ER CADPS SNP Missense_Mutation 3 62385241 C T 31 100 BRCA TCGA-A2-A0ER AADAT SNP Silent 4 170991750 G A 41 53 BRCA TCGA-A2-A0ER SLC36A3 SNP Splice_Site 5 150682787 C A 19 57 BRCA TCGA-A2-A0ER SLC17A4 SNP Splice_site 6 25769214 T C 60 48 BRCA TCGA-A2-A0ER NCOA2 SNP Silent 8 71060629 G A 38 49 BRCA TCGA-A2-A0ER SVEP1 SNP Missense_Mutation 9 113168951 G C 41 53 BRCA TCGA-A2-A0ER PTCH1 SNP Missense_Mutation 9 98211487 G A 37 83 BRCA TCGA-A2-A0ES TLR7 SNP Missense_Mutation 23 12904271 A G 4 89 BRCA TCGA-A2-A0ES CCR4 SNP Silent 3 32995697 G A 46 57 BRCA TCGA-A2-A0ES DNAH8 DEL Frame_Shift_Del 6 38754658 A - 12 80 BRCA TCGA-A2-A0ES EEF1A1 INS Frame_Shift_Ins 6 74228775 - T 8 47 BRCA TCGA-A2-A0ET PMVK SNP Silent 1 154904864 G A 41 49 BRCA TCGA-A2-A0ET DNM3 SNP Missense_Mutation 1 172376937 C T 31 81 BRCA TCGA-A2-A0ET PYCR2 SNP Missense_Mutation 1 226109671 C A 18 90 BRCA TCGA-A2-A0ET GBP4 SNP Missense_Mutation 1 89661003 C T 31 88 BRCA TCGA-A2-A0ET OR51A4 SNP Missense_Mutation 11 4967799 G A 47 62 BRCA TCGA-A2-A0ET NAA25 SNP Silent 12 112513493 G C 33 55 BRCA TCGA-A2-A0ET TMEM132B SNP Nonsense_Mutation 12 126139187 C A 26 70 BRCA TCGA-A2-A0ET GPR182 SNP Missense_Mutation 12 57389412 G A 34 92 BRCA TCGA-A2-A0ET NTN4 SNP Silent 12 96063918 T C 52 68 BRCA TCGA-A2-A0ET DHRS2 SNP Nonsense_Mutation 14 24112421 G T 41 75 BRCA TCGA-A2-A0ET FSCB SNP Silent 14 44973848 T C 56 44 BRCA TCGA-A2-A0ET CACNA1H SNP Silent 16 1270781 C T 19 53 BRCA TCGA-A2-A0ET ZFP90 SNP Missense_Mutation 16 68591931 G T 41 56 BRCA TCGA-A2-A0ET GREB1L SNP Missense_Mutation 18 19098026 T A 56 78 BRCA TCGA-A2-A0ET FAM59A SNP Missense_Mutation 18 29867436 G A 42 98 BRCA TCGA-A2-A0ET TMEM161A SNP Missense_Mutation 19 19240990 C A 32 49 BRCA TCGA-A2-A0ET ATP1A3 SNP Missense_Mutation 19 42471431 G A 39 73 BRCA TCGA-A2-A0ET LIPE SNP Missense_Mutation 19 42930910 A C 5 58 BRCA TCGA-A2-A0ET IWS1 SNP Nonsense_Mutation 2 128262380 C A 30 71 BRCA TCGA-A2-A0ET APOB SNP Silent 2 21260974 G A 45 57 BRCA TCGA-A2-A0ET LTN1 SNP Missense_Mutation 21 30316846 C T 26 62 BRCA TCGA-A2-A0ET F11 SNP Silent 4 187206918 C T 27 52 BRCA TCGA-A2-A0ET TRIO SNP Silent 5 14504592 C T 27 45 BRCA TCGA-A2-A0ET IQGAP2 SNP Nonsense_Mutation 5 75967586 C A 29 100 BRCA TCGA-A2-A0ET MYB INS Frame_Shift_Ins 6 135510996 - T 24 100 BRCA TCGA-A2-A0ET FBXO30 SNP Missense_Mutation 6 146126058 G A 39 100 BRCA TCGA-A2-A0ET UST SNP Missense_Mutation 6 149395109 C T 27 80 BRCA TCGA-A2-A0ET UHRF1BP1 SNP Missense_Mutation 6 34802149 G A 38 84 BRCA TCGA-A2-A0ET C9orf43 SNP Silent 9 116185749 C T 23 25 BRCA TCGA-A2-A0ET TLN1 SNP Missense_Mutation 9 35711750 G A 39 64 BRCA TCGA-A2-A0EU ASTN1 SNP Splice_Site 1 176992539 C T 18 100 BRCA TCGA-A2-A0EU UBR4 SNP Missense_Mutation 1 19504222 C T 29 97 BRCA TCGA-A2-A0EU MOSC1 SNP Missense_Mutation 1 220986672 G A 41 69 BRCA TCGA-A2-A0EU MMEL1 SNP Missense_Mutation 1 2527495 C T 31 84 BRCA TCGA-A2-A0EU CD52 SNP Missense_Mutation 1 26644515 C T 27 50 BRCA TCGA-A2-A0EU EIF2B3 SNP Missense_Mutation 1 45363093 G A 40 86 BRCA TCGA-A2-A0EU DOCK7 SNP Missense_Mutation 1 63084424 G C 33 63 BRCA TCGA-A2-A0EU GBP4 SNP Missense_Mutation 1 89651075 T G 64 50 BRCA TCGA-A2-A0EU ADAM12 SNP Silent 10 127708377 G A 44 50 BRCA TCGA-A2-A0EU IL10RA SNP Missense_Mutation 11 117864082 G A 37 78 BRCA TCGA-A2-A0EU FANCF SNP Missense_Mutation 11 22646285 C T 25 53 BRCA TCGA-A2-A0EU OR4A5 SNP Missense_Mutation 11 51412164 T G 63 65 BRCA TCGA-A2-A0EU DDX11 SNP Missense_Mutation 12 31241984 T C 61 67 BRCA TCGA-A2-A0EU CNTN1 SNP Silent 12 41352942 C T 30 50 BRCA TCGA-A2-A0EU ZDHHC17 SNP Missense_Mutation 12 77208950 G A 47 100 BRCA TCGA-A2-A0EU AMDHD1 SNP Missense_Mutation 12 96360235 G C 41 100 BRCA TCGA-A2-A0EU DCT SNP Missense_Mutation 13 95118847 G A 39 50 BRCA TCGA-A2-A0EU FOXA1 DEL Frame_Shift_Del 14 38061410 C - 29 51 BRCA TCGA-A2-A0EU STRC SNP Missense_Mutation 15 43893206 T C 51 52 BRCA TCGA-A2-A0EU VPS13C SNP Missense_Mutation 15 62161736 C T 19 60 BRCA TCGA-A2-A0EU ZNF592 SNP Silent 15 85345429 G A 35 49 BRCA TCGA-A2-A0EU SARM1 SNP Missense_Mutation 17 26712072 C A 28 82 BRCA TCGA-A2-A0EU SIPA1L3 SNP Silent 19 38631959 A G 14 27 BRCA TCGA-A2-A0EU PTPRH SNP Silent 19 55693164 G A 40 41 BRCA TCGA-A2-A0EU MUC16 SNP Silent 19 9066848 C T 32 49 BRCA TCGA-A2-A0EU ZNF559 SNP Missense_Mutation 19 9453596 A C 9 60 BRCA TCGA-A2-A0EU FMNL2 SNP Silent 2 153504368 C T 28 71 BRCA TCGA-A2-A0EU CTSA SNP Missense_Mutation 20 44521044 A T 4 72 BRCA TCGA-A2-A0EU CYP24A1 SNP Splice_site 20 52779256 C T 23 59 BRCA TCGA-A2-A0EU GRIK1 SNP Missense_Mutation 21 31023551 G A 37 71 BRCA TCGA-A2-A0EU MORC3 SNP Missense_Mutation 21 37736548 A C 11 75 BRCA TCGA-A2-A0EU ABCG1 SNP Missense_Mutation 21 43645875 C T 19 61 BRCA TCGA-A2-A0EU DCAF12L1 SNP Missense_Mutation 23 125685532 G A 38 73 BRCA TCGA-A2-A0EU IGSF1 SNP Missense_Mutation 23 130409529 T C 57 67 BRCA TCGA-A2-A0EU HEG1 SNP Missense_Mutation 3 124746052 A G 11 40 BRCA TCGA-A2-A0EU AADAC SNP Missense_Mutation 3 151545656 A G 4 47 BRCA TCGA-A2-A0EU ADAM29 SNP Missense_Mutation 4 175896776 G T 44 72 BRCA TCGA-A2-A0EU FAM149A SNP Missense_Mutation 4 187074851 C A 21 84 BRCA TCGA-A2-A0EU JAKMIP1 SNP Missense_Mutation 4 6083353 G A 38 51 BRCA TCGA-A2-A0EU PRKG2 SNP Splice_site 4 82056310 A G 5 92 BRCA TCGA-A2-A0EU ARHGAP24 SNP Silent 4 86916604 C T 19 34 BRCA TCGA-A2-A0EU CHSY3 SNP Missense_Mutation 5 129243980 C A 19 98 BRCA TCGA-A2-A0EU PCDHA5 SNP Missense_Mutation 5 140201481 G A 39 95 BRCA TCGA-A2-A0EU PCDHB7 SNP Missense_Mutation 5 140554089 C T 31 72 BRCA TCGA-A2-A0EU PDGFRB SNP Missense_Mutation 5 149510130 T C 51 66 BRCA TCGA-A2-A0EU MAP3K1 INS Frame_Shift_Ins 5 56160679 - A 61 83 BRCA TCGA-A2-A0EU MAP3K1 SNP Missense_Mutation 5 56181765 C G 31 89 BRCA TCGA-A2-A0EU ALDH8A1 SNP Silent 6 135239889 C T 23 9 BRCA TCGA-A2-A0EU TNFAIP3 SNP Silent 6 138200082 C T 19 43 BRCA TCGA-A2-A0EU PKHD1 SNP Missense_Mutation 6 51524257 C T 27 45 BRCA TCGA-A2-A0EU CSMD3 SNP Missense_Mutation 8 113564934 C T 19 77 BRCA TCGA-A2-A0EU CYP11B1 SNP Missense_Mutation 8 143956492 G A 38 88 BRCA TCGA-A2-A0EU BRD3 SNP Missense_Mutation 9 136918422 A T 15 69 BRCA TCGA-A2-A0EU TUBBP5 SNP Missense_Mutation 9 141071280 G T 35 61 BRCA TCGA-A2-A0EU DMRT3 SNP Missense_Mutation 9 990144 T A 57 47 BRCA TCGA-A2-A0EV USH2A SNP Splice_site 1 215802376 C T 22 95 BRCA TCGA-A2-A0EV CELA3B SNP Missense_Mutation 1 22307568 G A 37 47 BRCA TCGA-A2-A0EV OR2L13 SNP Missense_Mutation 1 248263384 C G 26 80 BRCA TCGA-A2-A0EV TESK2 SNP Missense_Mutation 1 45923438 T C 52 86 BRCA TCGA-A2-A0EV KCNAB2 SNP Silent 1 6147566 C T 27 43 BRCA TCGA-A2-A0EV CACUL1 SNP Missense_Mutation 10 120450820 C T 32 99 BRCA TCGA-A2-A0EV DCLRE1C SNP Missense_Mutation 10 14951002 C G 32 56 BRCA TCGA-A2-A0EV HSPA8 SNP Missense_Mutation 11 122930605 A C 4 52 BRCA TCGA-A2-A0EV ESAM SNP Missense_Mutation 11 124626494 C T 32 59 BRCA TCGA-A2-A0EV HYLS1 SNP Missense_Mutation 11 125769927 G A 41 73 BRCA TCGA-A2-A0EV FLRT1 SNP Silent 11 63884963 C T 22 29 BRCA TCGA-A2-A0EV OR6A2 SNP Missense_Mutation 11 6816119 T C 58 61 BRCA TCGA-A2-A0EV RSF1 SNP Missense_Mutation 11 77412285 T G 56 51 BRCA TCGA-A2-A0EV UBE3B SNP Missense_Mutation 12 109959017 T C 64 92 BRCA TCGA-A2-A0EV HOXC4 SNP Silent 12 54448689 G C 42 54 BRCA TCGA-A2-A0EV CLEC6A SNP Splice_Site 12 8618227 T C 57 57 BRCA TCGA-A2-A0EV TMCC3 SNP Missense_Mutation 12 94965266 C G 17 97 BRCA TCGA-A2-A0EV SPG11 SNP Missense_Mutation 15 44864968 G C 34 91 BRCA TCGA-A2-A0EV ZNF609 SNP Silent 15 64792134 C T 27 50 BRCA TCGA-A2-A0EV CLEC16A SNP Missense_Mutation 16 11137916 G A 37 93 BRCA TCGA-A2-A0EV AP1G1 SNP Missense_Mutation 16 71792720 G A 45 85 BRCA TCGA-A2-A0EV NCOR1 SNP Nonsense_Mutation 17 16024444 C A 31 100 BRCA TCGA-A2-A0EV UBA2 SNP Silent 19 34960012 C T 29 58 BRCA TCGA-A2-A0EV ZNF420 SNP Nonsense_Mutation 19 37618814 T G 51 52 BRCA TCGA-A2-A0EV FCGBP SNP Missense_Mutation 19 40368696 C T 23 93 BRCA TCGA-A2-A0EV ARHGAP35 SNP Missense_Mutation 19 47424427 G A 39 74 BRCA TCGA-A2-A0EV CRX SNP Missense_Mutation 19 48343000 G A 44 60 BRCA TCGA-A2-A0EV ZSCAN5A SNP Missense_Mutation 19 56734011 C T 30 55 BRCA TCGA-A2-A0EV ZSCAN5A SNP Missense_Mutation 19 56735006 C G 30 49 BRCA TCGA-A2-A0EV PCP2 SNP Splice_Site 19 7696695 C T 24 73 BRCA TCGA-A2-A0EV CLASP1 SNP Missense_Mutation 2 122161955 G A 45 100 BRCA TCGA-A2-A0EV NEB SNP Missense_Mutation 2 152394411 C T 31 76 BRCA TCGA-A2-A0EV SF3B1 SNP Missense_Mutation 2 198266834 T C 62 93 BRCA TCGA-A2-A0EV CASP8 SNP Missense_Mutation 2 202137448 A C 4 38 BRCA TCGA-A2-A0EV FARP2 SNP Missense_Mutation 2 242396201 G A 39 24 BRCA TCGA-A2-A0EV XDH SNP Missense_Mutation 2 31595149 C T 31 59 BRCA TCGA-A2-A0EV LRPPRC SNP Missense_Mutation 2 44174410 G A 34 82 BRCA TCGA-A2-A0EV TGIF2 SNP Missense_Mutation 20 35219587 C T 22 66 BRCA TCGA-A2-A0EV ZMYND8 SNP Missense_Mutation 20 45867732 G A 43 100 BRCA TCGA-A2-A0EV FAM176C SNP Missense_Mutation 21 33873789 G C 33 68 BRCA TCGA-A2-A0EV NAP1L3 SNP Silent 23 92927934 G A 35 46 BRCA TCGA-A2-A0EV C3orf52 SNP Missense_Mutation 3 111821786 G A 41 55 BRCA TCGA-A2-A0EV ZBBX SNP Silent 3 167034856 C T 25 55 BRCA TCGA-A2-A0EV PIK3CA INS Splice_site 3 178928219 - ATA 41 98 BRCA TCGA-A2-A0EV PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A2-A0EV DGKG SNP Missense_Mutation 3 185986615 C T 23 71 BRCA TCGA-A2-A0EV TRAK1 SNP Nonsense_Mutation 3 42229603 G T 41 99 BRCA TCGA-A2-A0EV CCNG2 SNP Missense_Mutation 4 78080581 C T 26 84 BRCA TCGA-A2-A0EV PCDHGA1 SNP Missense_Mutation 5 140711927 C T 27 81 BRCA TCGA-A2-A0EV PCDHGB5 SNP Missense_Mutation 5 140778347 G A 41 97 BRCA TCGA-A2-A0EV MYO10 SNP Silent 5 16666900 C T 21 56 BRCA TCGA-A2-A0EV GIMAP7 SNP Missense_Mutation 7 150217906 A G 9 53 BRCA TCGA-A2-A0EV ADCY1 SNP Silent 7 45717647 C T 31 28 BRCA TCGA-A2-A0EV HABP4 SNP Missense_Mutation 9 99228042 G A 41 58 BRCA TCGA-A2-A0EW CACNA1E SNP Missense_Mutation 1 181726119 C T 23 73 BRCA TCGA-A2-A0EW LOC100288820 SNP Missense_Mutation 1 233972031 G A 47 52 BRCA TCGA-A2-A0EW NARS2 SNP Missense_Mutation 11 78204212 G C 39 93 BRCA TCGA-A2-A0EW CIT SNP Missense_Mutation 12 120156088 G A 39 100 BRCA TCGA-A2-A0EW OR4N4 SNP Silent 15 22382595 A G 9 49 BRCA TCGA-A2-A0EW CDH1 SNP Splice_Site 16 68844098 A G 7 86 BRCA TCGA-A2-A0EW PIP5K1C SNP Missense_Mutation 19 3653547 T C 49 71 BRCA TCGA-A2-A0EW ZNF45 SNP Missense_Mutation 19 44418767 T C 64 59 BRCA TCGA-A2-A0EW TTN SNP Missense_Mutation 2 179467306 G T 42 51 BRCA TCGA-A2-A0EW CTAG2 SNP Silent 23 153881613 G A 38 50 BRCA TCGA-A2-A0EW PIK3CA SNP Missense_Mutation 3 178936095 A G 7 90 BRCA TCGA-A2-A0EW ARHGAP18 SNP Missense_Mutation 6 129937374 G A 44 97 BRCA TCGA-A2-A0EW CTGF SNP Missense_Mutation 6 132270681 C T 19 88 BRCA TCGA-A2-A0EW DDC SNP Missense_Mutation 7 50605566 C T 20 88 BRCA TCGA-A2-A0EW RAD21 SNP Missense_Mutation 8 117862955 C G 32 92 BRCA TCGA-A2-A0EX KIAA2013 DEL Frame_Shift_Del 1 11985345 T - 56 70 BRCA TCGA-A2-A0EX SHE SNP Missense_Mutation 1 154461722 G A 40 53 BRCA TCGA-A2-A0EX TRIM11 INS Frame_Shift_Ins 1 228584379 - AC 15 52 BRCA TCGA-A2-A0EX PRDM16 SNP Missense_Mutation 1 3301795 G A 40 81 BRCA TCGA-A2-A0EX HK1 SNP Nonsense_Mutation 10 71154851 C T 29 86 BRCA TCGA-A2-A0EX ESPL1 DEL Splice_site 12 53682322 GT - 44 49 BRCA TCGA-A2-A0EX GPR56 SNP Missense_Mutation 16 57691314 C A 17 74 BRCA TCGA-A2-A0EX CDH1 SNP Nonsense_Mutation 16 68849628 C T 21 52 BRCA TCGA-A2-A0EX KRTAP3-2 SNP Missense_Mutation 17 39155871 T A 58 63 BRCA TCGA-A2-A0EX FTSJ3 SNP Missense_Mutation 17 61898202 T C 60 54 BRCA TCGA-A2-A0EX FXYD5 SNP Nonsense_Mutation 19 35649292 G A 47 47 BRCA TCGA-A2-A0EX PLEKHA4 SNP Silent 19 49363612 G A 40 37 BRCA TCGA-A2-A0EX PIKFYVE SNP Silent 2 209212650 C T 22 56 BRCA TCGA-A2-A0EX PRND SNP Missense_Mutation 20 4705447 C A 25 76 BRCA TCGA-A2-A0EX PWP2 SNP Missense_Mutation 21 45528869 C T 29 80 BRCA TCGA-A2-A0EX PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-A2-A0EX WHSC1 INS Frame_Shift_Ins 4 1954980 - G 59 48 BRCA TCGA-A2-A0EX EPB41L4A SNP Missense_Mutation 5 111506043 C T 30 86 BRCA TCGA-A2-A0EX SNX3 SNP Missense_Mutation 6 108581992 C A 27 69 BRCA TCGA-A2-A0EX C6orf228 DEL Frame_Shift_Del 6 11094562 G - 39 57 BRCA TCGA-A2-A0EX GRM1 SNP Missense_Mutation 6 146720226 G A 38 100 BRCA TCGA-A2-A0EX RNF19A SNP Missense_Mutation 8 101300149 T G 52 63 BRCA TCGA-A2-A0EY PTGFRN SNP Missense_Mutation 1 117484574 G A 39 89 BRCA TCGA-A2-A0EY CHRNB2 SNP Silent 1 154543986 C T 29 67 BRCA TCGA-A2-A0EY IGSF8 SNP Silent 1 160063723 G C 39 18 BRCA TCGA-A2-A0EY SPEN SNP Missense_Mutation 1 16260104 G A 45 64 BRCA TCGA-A2-A0EY SPEN SNP Missense_Mutation 1 16260233 G C 33 73 BRCA TCGA-A2-A0EY SPEN SNP Missense_Mutation 1 16260482 G A 33 66 BRCA TCGA-A2-A0EY SPEN SNP Silent 1 16260814 G C 45 39 BRCA TCGA-A2-A0EY SPEN SNP Silent 1 16262320 G A 45 50 BRCA TCGA-A2-A0EY ALPL SNP Missense_Mutation 1 21889712 G A 40 94 BRCA TCGA-A2-A0EY MARK1 SNP Missense_Mutation 1 220835278 G C 33 100 BRCA TCGA-A2-A0EY CDC42BPA SNP Nonsense_Mutation 1 227216475 C A 29 87 BRCA TCGA-A2-A0EY PCNXL2 SNP Missense_Mutation 1 233121777 C T 29 32 BRCA TCGA-A2-A0EY CEP170 SNP Missense_Mutation 1 243349584 C T 29 76 BRCA TCGA-A2-A0EY CC2D1B SNP Missense_Mutation 1 52825462 C T 31 75 BRCA TCGA-A2-A0EY CHD5 SNP Silent 1 6202326 G A 38 35 BRCA TCGA-A2-A0EY ITGB3BP SNP Silent 1 63920061 G A 47 50 BRCA TCGA-A2-A0EY PDCD11 SNP Missense_Mutation 10 105160163 G A 45 71 BRCA TCGA-A2-A0EY FRMD4A SNP Silent 10 13743360 G A 33 80 BRCA TCGA-A2-A0EY DCLRE1C SNP Missense_Mutation 10 14950493 C G 32 73 BRCA TCGA-A2-A0EY MLL SNP Missense_Mutation 11 118375222 C T 29 85 BRCA TCGA-A2-A0EY TRAPPC4 SNP Silent 11 118890872 C T 31 52 BRCA TCGA-A2-A0EY QSER1 SNP Missense_Mutation 11 32955397 C G 32 69 BRCA TCGA-A2-A0EY QSER1 SNP Missense_Mutation 11 32955563 C G 32 80 BRCA TCGA-A2-A0EY LMO2 SNP Missense_Mutation 11 33886164 G A 39 56 BRCA TCGA-A2-A0EY OR4D11 SNP Missense_Mutation 11 59271218 C A 18 60 BRCA TCGA-A2-A0EY FERMT3 SNP Missense_Mutation 11 63986822 G A 38 84 BRCA TCGA-A2-A0EY PCF11 SNP Missense_Mutation 11 82876651 C T 32 68 BRCA TCGA-A2-A0EY ACTR6 SNP Nonsense_Mutation 12 100604127 C G 17 80 BRCA TCGA-A2-A0EY PARPBP SNP Missense_Mutation 12 102569397 C G 29 65 BRCA TCGA-A2-A0EY WDR66 SNP Missense_Mutation 12 122413473 C T 32 60 BRCA TCGA-A2-A0EY KNTC1 SNP Missense_Mutation 12 123089434 G A 40 58 BRCA TCGA-A2-A0EY GRIN2B SNP Silent 12 14018978 C T 32 64 BRCA TCGA-A2-A0EY SLC38A1 SNP Nonsense_Mutation 12 46600987 C A 29 100 BRCA TCGA-A2-A0EY DIP2B SNP Missense_Mutation 12 51127933 G A 45 100 BRCA TCGA-A2-A0EY KRT76 SNP Silent 12 53164971 A G 7 48 BRCA TCGA-A2-A0EY ACSS3 SNP Splice_Site 12 81610679 G C 33 84 BRCA TCGA-A2-A0EY ACSS3 SNP Missense_Mutation 12 81647325 G A 33 99 BRCA TCGA-A2-A0EY A2M SNP Silent 12 9246090 C T 32 58 BRCA TCGA-A2-A0EY LOC643677 SNP Silent 13 103390519 C T 29 50 BRCA TCGA-A2-A0EY LOC643677 SNP Missense_Mutation 13 103399536 C T 30 47 BRCA TCGA-A2-A0EY PARP4 SNP Missense_Mutation 13 25021216 C T 18 61 BRCA TCGA-A2-A0EY PABPC3 SNP Nonsense_Mutation 13 25670378 C G 19 57 BRCA TCGA-A2-A0EY STARD13 SNP Missense_Mutation 13 33859651 C G 28 82 BRCA TCGA-A2-A0EY RCBTB2 SNP Missense_Mutation 13 49089446 C T 29 86 BRCA TCGA-A2-A0EY TDRD3 SNP Silent 13 61057959 G A 38 54 BRCA TCGA-A2-A0EY DNAJC3 SNP Missense_Mutation 13 96438207 G A 45 83 BRCA TCGA-A2-A0EY IPO5 SNP Missense_Mutation 13 98670799 G A 33 100 BRCA TCGA-A2-A0EY CDC42BPB SNP Nonsense_Mutation 14 103465921 G A 45 75 BRCA TCGA-A2-A0EY LTB4R2 SNP Missense_Mutation 14 24780814 G A 37 68 BRCA TCGA-A2-A0EY CLEC14A SNP Missense_Mutation 14 38724848 G A 40 74 BRCA TCGA-A2-A0EY RBM25 SNP Missense_Mutation 14 73576159 C G 32 52 BRCA TCGA-A2-A0EY RYR3 SNP Silent 15 34094087 G A 34 64 BRCA TCGA-A2-A0EY CAPN3 SNP Silent 15 42703522 C T 29 63 BRCA TCGA-A2-A0EY PATL2 SNP Missense_Mutation 15 44965451 G A 37 76 BRCA TCGA-A2-A0EY DMXL2 SNP Nonsense_Mutation 15 51829687 G A 45 85 BRCA TCGA-A2-A0EY MYO9A SNP Missense_Mutation 15 72141301 T A 62 90 BRCA TCGA-A2-A0EY LMAN1L SNP Nonsense_Mutation 15 75111590 C G 29 61 BRCA TCGA-A2-A0EY POLR3K SNP Silent 16 103518 G A 33 69 BRCA TCGA-A2-A0EY ERCC4 SNP Silent 16 14041640 C T 29 63 BRCA TCGA-A2-A0EY ENSG00000185864 SNP Missense_Mutation 16 21858844 C G 29 55 BRCA TCGA-A2-A0EY NOD2 SNP Silent 16 50744980 C T 29 65 BRCA TCGA-A2-A0EY SLC12A3 SNP Missense_Mutation 16 56924230 G A 39 57 BRCA TCGA-A2-A0EY NLRC5 SNP Silent 16 57075469 C T 31 45 BRCA TCGA-A2-A0EY CDH11 SNP Silent 16 65016037 G A 41 57 BRCA TCGA-A2-A0EY HYDIN SNP Silent 16 70993581 G A 37 50 BRCA TCGA-A2-A0EY RFFL SNP Missense_Mutation 17 33344550 C T 29 78 BRCA TCGA-A2-A0EY CWC25 SNP Silent 17 36958378 C G 23 42 BRCA TCGA-A2-A0EY LOC100288229 SNP Silent 17 43625554 G A 47 54 BRCA TCGA-A2-A0EY CACNA1G SNP Missense_Mutation 17 48693656 G T 33 77 BRCA TCGA-A2-A0EY CACNA1G SNP Splice_site 17 48695486 G C 47 51 BRCA TCGA-A2-A0EY GRIN2C SNP Missense_Mutation 17 72850861 C G 30 98 BRCA TCGA-A2-A0EY TNK1 SNP Silent 17 7286594 G A 45 54 BRCA TCGA-A2-A0EY MFSD11 SNP Splice_Site 17 74763467 G A 33 92 BRCA TCGA-A2-A0EY TP53 SNP Missense_Mutation 17 7577580 T C 57 55 BRCA TCGA-A2-A0EY RPTOR SNP Silent 17 78923268 G A 33 68 BRCA TCGA-A2-A0EY MALT1 SNP Missense_Mutation 18 56412910 G A 45 97 BRCA TCGA-A2-A0EY ANKRD12 SNP Missense_Mutation 18 9256837 G A 33 75 BRCA TCGA-A2-A0EY ACP5 SNP Missense_Mutation 19 11687274 C A 32 61 BRCA TCGA-A2-A0EY ZNF625 SNP Missense_Mutation 19 12256707 C T 19 41 BRCA TCGA-A2-A0EY DHPS SNP Missense_Mutation 19 12792473 G C 45 67 BRCA TCGA-A2-A0EY ZNF626 SNP Missense_Mutation 19 20808023 C G 32 55 BRCA TCGA-A2-A0EY CLIP3 SNP Silent 19 36517498 C T 31 43 BRCA TCGA-A2-A0EY ZNF527 SNP Missense_Mutation 19 37880726 G T 34 61 BRCA TCGA-A2-A0EY HNRNPL SNP Missense_Mutation 19 39329054 C T 31 77 BRCA TCGA-A2-A0EY LGALS14 SNP Missense_Mutation 19 40196643 G T 45 45 BRCA TCGA-A2-A0EY ATP1A3 SNP Silent 19 42472978 G A 33 68 BRCA TCGA-A2-A0EY FEM1A SNP Silent 19 4793216 C T 23 30 BRCA TCGA-A2-A0EY ZNF473 SNP Missense_Mutation 19 50550264 C G 31 55 BRCA TCGA-A2-A0EY SHANK1 SNP Missense_Mutation 19 51215349 G A 41 96 BRCA TCGA-A2-A0EY NLRP7 SNP Missense_Mutation 19 55451001 G A 38 50 BRCA TCGA-A2-A0EY NLRP13 SNP Silent 19 56424553 G A 40 42 BRCA TCGA-A2-A0EY ZNF211 SNP Missense_Mutation 19 58152315 A T 7 58 BRCA TCGA-A2-A0EY ZNF587 SNP Nonsense_Mutation 19 58370801 C T 29 47 BRCA TCGA-A2-A0EY MRPS9 SNP Missense_Mutation 2 105713761 G A 37 99 BRCA TCGA-A2-A0EY IL36B SNP Silent 2 113785618 G T 34 48 BRCA TCGA-A2-A0EY GPR39 SNP Silent 2 133174867 C T 29 51 BRCA TCGA-A2-A0EY NEB SNP Missense_Mutation 2 152467080 C G 32 100 BRCA TCGA-A2-A0EY BBS5 SNP Missense_Mutation 2 170359665 G A 45 98 BRCA TCGA-A2-A0EY CHN1 SNP Missense_Mutation 2 175742723 C G 32 100 BRCA TCGA-A2-A0EY SMC6 SNP Nonsense_Mutation 2 17897524 C A 32 79 BRCA TCGA-A2-A0EY TTN SNP Missense_Mutation 2 179422744 C T 21 100 BRCA TCGA-A2-A0EY ZDBF2 SNP Missense_Mutation 2 207175781 C G 29 49 BRCA TCGA-A2-A0EY TMEM169 SNP Missense_Mutation 2 216964838 G A 40 55 BRCA TCGA-A2-A0EY OBSL1 SNP Silent 2 220418356 G A 38 47 BRCA TCGA-A2-A0EY PPP1R7 SNP Missense_Mutation 2 242089920 G A 41 68 BRCA TCGA-A2-A0EY LTBP1 SNP Missense_Mutation 2 33477830 C T 29 80 BRCA TCGA-A2-A0EY STRN DEL Frame_Shift_Del 2 37076895 A - 13 94 BRCA TCGA-A2-A0EY PELI1 SNP Missense_Mutation 2 64321937 G A 45 100 BRCA TCGA-A2-A0EY MTHFD2 SNP Silent 2 74425784 C T 32 27 BRCA TCGA-A2-A0EY PROM2 SNP Silent 2 95952919 G A 45 40 BRCA TCGA-A2-A0EY ZAP70 SNP Missense_Mutation 2 98354504 G A 39 93 BRCA TCGA-A2-A0EY RIN2 SNP Missense_Mutation 20 19955639 C G 31 78 BRCA TCGA-A2-A0EY PLAGL2 SNP Missense_Mutation 20 30784659 G C 33 66 BRCA TCGA-A2-A0EY SALL4 SNP Silent 20 50405595 C T 31 32 BRCA TCGA-A2-A0EY PTK6 SNP Silent 20 62163969 G A 35 60 BRCA TCGA-A2-A0EY KRTAP6-1 SNP Missense_Mutation 21 31986193 C T 21 65 BRCA TCGA-A2-A0EY UMODL1 DEL Frame_Shift_Del 21 43496237 G - 47 60 BRCA TCGA-A2-A0EY UMODL1 SNP Missense_Mutation 21 43496238 G C 41 61 BRCA TCGA-A2-A0EY DIP2A SNP Missense_Mutation 21 47957380 G A 40 99 BRCA TCGA-A2-A0EY SGSM1 SNP Missense_Mutation 22 25301121 C G 32 85 BRCA TCGA-A2-A0EY PRR14L DEL Frame_Shift_Del 22 32108358 GT - 36 64 BRCA TCGA-A2-A0EY BAIAP2L2 SNP Missense_Mutation 22 38494435 C T 30 94 BRCA TCGA-A2-A0EY TRMT2B SNP Missense_Mutation 23 100275496 C T 32 60 BRCA TCGA-A2-A0EY COL4A5 SNP Nonsense_Mutation 23 107834341 C T 29 71 BRCA TCGA-A2-A0EY RGAG1 SNP Missense_Mutation 23 109694797 G A 45 61 BRCA TCGA-A2-A0EY TRPC5 SNP Missense_Mutation 23 111155925 C T 23 99 BRCA TCGA-A2-A0EY LONRF3 SNP Missense_Mutation 23 118123503 G C 41 71 BRCA TCGA-A2-A0EY OCRL SNP Silent 23 128674765 C T 27 60 BRCA TCGA-A2-A0EY F9 SNP Missense_Mutation 23 138630621 C T 25 64 BRCA TCGA-A2-A0EY AFF2 SNP Missense_Mutation 23 147891430 G A 45 85 BRCA TCGA-A2-A0EY PDHA1 SNP Missense_Mutation 23 19373834 G A 33 96 BRCA TCGA-A2-A0EY MBTPS2 SNP Silent 23 21857900 C T 31 48 BRCA TCGA-A2-A0EY DCAF8L1 SNP Missense_Mutation 23 27998944 C A 25 37 BRCA TCGA-A2-A0EY TMEM47 SNP Splice_Site 23 34657505 C T 32 80 BRCA TCGA-A2-A0EY EFHC2 SNP Missense_Mutation 23 44109464 G T 41 52 BRCA TCGA-A2-A0EY MAGIX SNP Missense_Mutation 23 49021148 C T 31 48 BRCA TCGA-A2-A0EY IQSEC2 SNP Silent 23 53276155 C T 29 52 BRCA TCGA-A2-A0EY PDZD11 SNP Silent 23 69509159 C T 23 37 BRCA TCGA-A2-A0EY KIF4A SNP Silent 23 69615655 G A 33 50 BRCA TCGA-A2-A0EY ERCC6L SNP Missense_Mutation 23 71425689 C G 32 48 BRCA TCGA-A2-A0EY MYLK SNP Missense_Mutation 3 123456342 T G 62 59 BRCA TCGA-A2-A0EY CCDC14 DEL Frame_Shift_Del 3 123675589 T - 56 63 BRCA TCGA-A2-A0EY ROPN1 SNP Missense_Mutation 3 123694230 C T 30 77 BRCA TCGA-A2-A0EY PPP2R3A SNP Missense_Mutation 3 135722043 C T 29 69 BRCA TCGA-A2-A0EY ZIC1 SNP Missense_Mutation 3 147128456 C T 31 78 BRCA TCGA-A2-A0EY GYG1 SNP Missense_Mutation 3 148727120 G T 33 55 BRCA TCGA-A2-A0EY SI SNP Missense_Mutation 3 164712085 G T 45 100 BRCA TCGA-A2-A0EY PIK3CA SNP Splice_site 3 178917478 G A 44 99 BRCA TCGA-A2-A0EY ABCF3 SNP Silent 3 183911228 C T 29 63 BRCA TCGA-A2-A0EY NDNF SNP Missense_Mutation 4 121958518 G C 33 88 BRCA TCGA-A2-A0EY ASB5 SNP Silent 4 177146416 T A 59 55 BRCA TCGA-A2-A0EY HTT SNP Silent 4 3162104 G T 46 52 BRCA TCGA-A2-A0EY N4BP2 SNP Silent 4 40127807 C G 29 71 BRCA TCGA-A2-A0EY FAM13A SNP Missense_Mutation 4 89726164 C G 29 54 BRCA TCGA-A2-A0EY SNX24 SNP Silent 5 122337115 A G 7 53 BRCA TCGA-A2-A0EY FBN2 SNP Missense_Mutation 5 127697490 C T 31 100 BRCA TCGA-A2-A0EY FBXW11 SNP Silent 5 171295750 G A 45 56 BRCA TCGA-A2-A0EY PDCD6 SNP Missense_Mutation 5 272878 C G 32 50 BRCA TCGA-A2-A0EY DDX4 SNP Missense_Mutation 5 55056082 C T 32 75 BRCA TCGA-A2-A0EY GCM2 SNP Missense_Mutation 6 10874552 C A 29 62 BRCA TCGA-A2-A0EY FAM54A SNP Silent 6 136560810 G C 41 35 BRCA TCGA-A2-A0EY KATNA1 SNP Missense_Mutation 6 149959615 G C 36 65 BRCA TCGA-A2-A0EY AKAP12 SNP Missense_Mutation 6 151670325 G C 33 77 BRCA TCGA-A2-A0EY SYNE1 SNP Silent 6 152623079 C T 24 55 BRCA TCGA-A2-A0EY HIST1H2BF SNP Missense_Mutation 6 26200015 G A 37 91 BRCA TCGA-A2-A0EY HIST1H1B SNP Missense_Mutation 6 27834879 C G 32 65 BRCA TCGA-A2-A0EY HIST1H2BO SNP Silent 6 27861510 C T 29 78 BRCA TCGA-A2-A0EY TRERF1 SNP Silent 6 42200628 C T 17 61 BRCA TCGA-A2-A0EY MUC17 SNP Nonsense_Mutation 7 100684341 C G 29 55 BRCA TCGA-A2-A0EY NRCAM SNP Splice_site 7 107823364 G T 42 71 BRCA TCGA-A2-A0EY CALD1 SNP Missense_Mutation 7 134552540 G A 37 84 BRCA TCGA-A2-A0EY CALD1 SNP Missense_Mutation 7 134620445 G C 33 83 BRCA TCGA-A2-A0EY SLC13A4 SNP Missense_Mutation 7 135366339 C G 24 49 BRCA TCGA-A2-A0EY ZNF467 SNP Missense_Mutation 7 149461892 C T 31 70 BRCA TCGA-A2-A0EY IL6 SNP Nonsense_Mutation 7 22769293 C A 29 48 BRCA TCGA-A2-A0EY ACTB SNP Missense_Mutation 7 5567953 C T 23 77 BRCA TCGA-A2-A0EY ZNF92 SNP Silent 7 64853754 C T 28 61 BRCA TCGA-A2-A0EY CROT SNP Missense_Mutation 7 87020973 C T 29 98 BRCA TCGA-A2-A0EY SUN1 SNP Missense_Mutation 7 882998 C G 29 82 BRCA TCGA-A2-A0EY CYP3A7 SNP Missense_Mutation 7 99317955 G A 33 62 BRCA TCGA-A2-A0EY TRPS1 SNP Missense_Mutation 8 116427084 C T 31 79 BRCA TCGA-A2-A0EY ELP3 SNP Silent 8 27989918 C T 29 49 BRCA TCGA-A2-A0EY GTF2E2 SNP Splice_Site 8 30472233 C T 32 96 BRCA TCGA-A2-A0EY WRN SNP Missense_Mutation 8 30954325 C T 29 62 BRCA TCGA-A2-A0EY ASH2L SNP Missense_Mutation 8 37996551 G A 33 100 BRCA TCGA-A2-A0EY PRKDC SNP Silent 8 48839893 C T 29 57 BRCA TCGA-A2-A0EY ZFHX4 SNP Silent 8 77765466 C T 19 52 BRCA TCGA-A2-A0EY PAG1 SNP Missense_Mutation 8 81888988 C T 32 87 BRCA TCGA-A2-A0EY DPY19L4 SNP Silent 8 95782692 G A 45 58 BRCA TCGA-A2-A0EY KCNS2 SNP Silent 8 99440888 C T 31 56 BRCA TCGA-A2-A0EY SMC2 SNP Silent 9 106862469 G A 45 56 BRCA TCGA-A2-A0EY FBXW2 SNP Missense_Mutation 9 123533674 G A 45 98 BRCA TCGA-A2-A0EY C5 SNP Missense_Mutation 9 123737059 C G 32 72 BRCA TCGA-A2-A0EY DENND1A SNP Splice_site 9 126520100 G A 35 82 BRCA TCGA-A2-A0EY GOLGA1 SNP Silent 9 127674285 C T 32 51 BRCA TCGA-A2-A0EY C9orf117 SNP Missense_Mutation 9 130474484 G C 33 53 BRCA TCGA-A2-A0EY LAMC3 SNP Silent 9 133907491 C T 19 47 BRCA TCGA-A2-A0EY SETX SNP Missense_Mutation 9 135173682 C T 29 66 BRCA TCGA-A2-A0EY SETX SNP Missense_Mutation 9 135203024 C T 29 63 BRCA TCGA-A2-A0EY LINGO2 SNP Silent 9 27950415 C T 32 59 BRCA TCGA-A2-A0EY C9orf131 SNP Missense_Mutation 9 35043674 C A 32 54 BRCA TCGA-A2-A0EY CD72 SNP Silent 9 35618081 C T 32 59 BRCA TCGA-A2-A0EY CD72 SNP Silent 9 35618271 C T 29 59 BRCA TCGA-A2-A0EY KIAA1432 SNP Missense_Mutation 9 5765456 C G 32 86 BRCA TCGA-A2-A0EY DAPK1 SNP Silent 9 90219926 C T 23 39 BRCA TCGA-A2-A0EY IARS SNP Missense_Mutation 9 95043061 C T 17 93 BRCA TCGA-A2-A0ST PEX11B SNP Missense_Mutation 1 145522575 A G 12 85 BRCA TCGA-A2-A0ST EFHD2 DEL Frame_Shift_Del 1 15736758 G - 47 84 BRCA TCGA-A2-A0ST ARHGAP21 SNP Missense_Mutation 10 24923969 C A 30 94 BRCA TCGA-A2-A0ST PPP2R1B SNP Silent 11 111637041 A C 6 28 BRCA TCGA-A2-A0ST OR11H12 SNP Missense_Mutation 14 19377881 G A 48 59 BRCA TCGA-A2-A0ST ABCC11 SNP Splice_Site 16 48204014 A C 6 84 BRCA TCGA-A2-A0ST NOL3 SNP Missense_Mutation 16 67208570 G C 38 50 BRCA TCGA-A2-A0ST RNASEH2A SNP Silent 19 12917877 G A 35 56 BRCA TCGA-A2-A0ST CCDC142 SNP Nonsense_Mutation 2 74709369 G T 37 53 BRCA TCGA-A2-A0ST RBMXL3 SNP Silent 23 114425975 T C 55 50 BRCA TCGA-A2-A0ST EAF1 SNP Silent 3 15469355 G A 33 61 BRCA TCGA-A2-A0ST FANCE SNP Missense_Mutation 6 35423973 G A 33 50 BRCA TCGA-A2-A0SU FNDC7 SNP Silent 1 109268547 C T 28 53 BRCA TCGA-A2-A0SU GATA3 INS Frame_Shift_Ins 10 8115874 - G 31 85 BRCA TCGA-A2-A0SU UBC SNP Missense_Mutation 12 125397063 C A 29 90 BRCA TCGA-A2-A0SU SMARCC2 SNP Missense_Mutation 12 56558254 T G 60 59 BRCA TCGA-A2-A0SU BRCA2 SNP Nonsense_Mutation 13 32972574 C G 19 47 BRCA TCGA-A2-A0SU CACNA1H SNP Missense_Mutation 16 1260048 G A 38 88 BRCA TCGA-A2-A0SU ADAMTS18 SNP Silent 16 77326976 G A 38 50 BRCA TCGA-A2-A0SU KSR1 SNP Missense_Mutation 17 25910101 G A 43 96 BRCA TCGA-A2-A0SU ACACA SNP Missense_Mutation 17 35468534 C T 27 100 BRCA TCGA-A2-A0SU PNMT SNP Silent 17 37825994 C G 29 53 BRCA TCGA-A2-A0SU ACLY SNP Missense_Mutation 17 40025782 G A 35 100 BRCA TCGA-A2-A0SU AZI1 SNP Nonsense_Mutation 17 79173241 G A 45 54 BRCA TCGA-A2-A0SU SLC38A10 DEL In_Frame_Del 17 79258654 TCTCCACCAGCA - 58 64 BRCA TCGA-A2-A0SU ACTG1 DEL Frame_Shift_Del 17 79477829 CC - 18 81 BRCA TCGA-A2-A0SU ALOXE3 SNP Splice_Site 17 8020092 A C 6 77 BRCA TCGA-A2-A0SU MOCOS SNP Missense_Mutation 18 33793393 C T 26 93 BRCA TCGA-A2-A0SU DLGAP1 SNP Missense_Mutation 18 3879654 G T 39 100 BRCA TCGA-A2-A0SU CACNA1A SNP Missense_Mutation 19 13341008 C T 17 94 BRCA TCGA-A2-A0SU C19orf53 SNP Missense_Mutation 19 13888918 C G 26 84 BRCA TCGA-A2-A0SU NCAN SNP Silent 19 19338574 G A 35 48 BRCA TCGA-A2-A0SU HAUS5 SNP Missense_Mutation 19 36109580 G A 38 52 BRCA TCGA-A2-A0SU REG3A SNP Missense_Mutation 2 79384752 T A 64 38 BRCA TCGA-A2-A0SU CELSR1 SNP Silent 22 46931940 G T 38 49 BRCA TCGA-A2-A0SU IFT122 DEL Frame_Shift_Del 3 129207141 G - 35 50 BRCA TCGA-A2-A0SU MUC4 SNP Missense_Mutation 3 195506501 G A 43 49 BRCA TCGA-A2-A0SU RGS12 SNP Missense_Mutation 4 3318650 C A 28 45 BRCA TCGA-A2-A0SU MOXD1 SNP Silent 6 132643998 G A 39 50 BRCA TCGA-A2-A0SU KIAA1244 SNP Silent 6 138599688 C T 30 47 BRCA TCGA-A2-A0SU GCC1 SNP Missense_Mutation 7 127222606 G A 44 68 BRCA TCGA-A2-A0SU TMEM213 DEL Frame_Shift_Del 7 138482852 GCAGCGCCTCCCC - 46 53 BRCA TCGA-A2-A0SU KIAA1147 DEL In_Frame_Del 7 141365068 TGCCCCCGA - 59 61 BRCA TCGA-A2-A0SU TAS2R5 SNP Missense_Mutation 7 141490297 C G 24 50 BRCA TCGA-A2-A0SU GIMAP7 DEL Frame_Shift_Del 7 150217162 T - 56 82 BRCA TCGA-A2-A0SU TRAPPC9 SNP Missense_Mutation 8 141294029 A C 9 48 BRCA TCGA-A2-A0SV FNDC7 SNP Missense_Mutation 1 109271347 C T 19 62 BRCA TCGA-A2-A0SV BRDT SNP Missense_Mutation 1 92445220 G A 44 53 BRCA TCGA-A2-A0SV ITGA8 SNP Silent 10 15628600 C T 27 44 BRCA TCGA-A2-A0SV OGDHL SNP Silent 10 50966465 G A 35 51 BRCA TCGA-A2-A0SV PTEN DEL In_Frame_Del 10 89685293 ACCATT - 2 89 BRCA TCGA-A2-A0SV DYNC2H1 SNP Splice_site 11 103055626 A G 4 72 BRCA TCGA-A2-A0SV OR51A2 SNP Silent 11 4976683 G A 41 46 BRCA TCGA-A2-A0SV OR52E4 SNP Silent 11 5905807 C T 28 40 BRCA TCGA-A2-A0SV FAT3 SNP Missense_Mutation 11 92543074 G A 42 99 BRCA TCGA-A2-A0SV CIT SNP Missense_Mutation 12 120146063 G A 41 100 BRCA TCGA-A2-A0SV PPM1H SNP Missense_Mutation 12 63042385 G A 38 81 BRCA TCGA-A2-A0SV DYRK2 SNP Missense_Mutation 12 68051820 G T 40 100 BRCA TCGA-A2-A0SV VKORC1 SNP Missense_Mutation 16 31104727 G A 37 46 BRCA TCGA-A2-A0SV SLC6A4 SNP Missense_Mutation 17 28545941 G A 35 86 BRCA TCGA-A2-A0SV ACLY SNP Missense_Mutation 17 40030163 C T 31 100 BRCA TCGA-A2-A0SV AOC3 SNP Silent 17 41008381 C T 28 64 BRCA TCGA-A2-A0SV ITGA2B SNP Splice_site 17 42454377 C T 24 78 BRCA TCGA-A2-A0SV TP53 DEL In_Frame_Del 17 7579343 TGCAAGAAG - 51 72 BRCA TCGA-A2-A0SV CEP76 SNP Missense_Mutation 18 12697393 T C 52 77 BRCA TCGA-A2-A0SV C19orf44 SNP Missense_Mutation 19 16611796 A C 9 52 BRCA TCGA-A2-A0SV SIN3B SNP Silent 19 16962240 G A 40 21 BRCA TCGA-A2-A0SV PREX1 SNP Missense_Mutation 20 47342884 C A 21 69 BRCA TCGA-A2-A0SV ATP9A SNP Missense_Mutation 20 50235558 G A 35 65 BRCA TCGA-A2-A0SV MOV10L1 SNP Missense_Mutation 22 50553671 G A 39 80 BRCA TCGA-A2-A0SV EFNB1 SNP Silent 23 68060260 G A 42 49 BRCA TCGA-A2-A0SV EPHB3 SNP Silent 3 184299398 T C 55 31 BRCA TCGA-A2-A0SV SORBS2 SNP Missense_Mutation 4 186544158 A T 7 54 BRCA TCGA-A2-A0SV PCDHGB2 SNP Silent 5 140740551 T C 51 51 BRCA TCGA-A2-A0SV FAT2 SNP Missense_Mutation 5 150925419 T C 49 49 BRCA TCGA-A2-A0SV PHACTR1 DEL In_Frame_Del 6 13230284 AGG - 3 91 BRCA TCGA-A2-A0SV CFTR DEL In_Frame_Del 7 117305522 AATAATTAG - 1 51 BRCA TCGA-A2-A0SV MLL3 SNP Missense_Mutation 7 151896496 T C 50 56 BRCA TCGA-A2-A0SV HDAC9 SNP Missense_Mutation 7 18801793 G T 37 93 BRCA TCGA-A2-A0SV CSMD1 SNP Splice_Site 8 3216673 C T 18 100 BRCA TCGA-A2-A0SV AMBP SNP Silent 9 116823771 G A 38 47 BRCA TCGA-A2-A0SV MORN5 SNP Silent 9 124936830 C T 19 48 BRCA TCGA-A2-A0SV DMRTA1 SNP Silent 9 22451646 T A 56 62 BRCA TCGA-A2-A0SW TCHH SNP Missense_Mutation 1 152085491 G A 38 50 BRCA TCGA-A2-A0SW RNF2 SNP Silent 1 185060756 C T 32 68 BRCA TCGA-A2-A0SW USH2A SNP Missense_Mutation 1 215848109 G T 46 64 BRCA TCGA-A2-A0SW SRSF11 SNP Missense_Mutation 1 70716474 G A 41 98 BRCA TCGA-A2-A0SW LRRC8B SNP Missense_Mutation 1 90049138 A C 9 69 BRCA TCGA-A2-A0SW SVIL SNP Splice_Site 10 29760173 C T 24 100 BRCA TCGA-A2-A0SW DDX50 SNP Missense_Mutation 10 70666581 G A 33 64 BRCA TCGA-A2-A0SW PDE6C SNP Missense_Mutation 10 95421855 G A 33 94 BRCA TCGA-A2-A0SW C11orf9 SNP Silent 11 61547364 G A 35 58 BRCA TCGA-A2-A0SW GCN1L1 SNP Silent 12 120599749 C T 27 18 BRCA TCGA-A2-A0SW METTL7B SNP Splice_site 12 56076035 C A 23 90 BRCA TCGA-A2-A0SW USP15 SNP Missense_Mutation 12 62786838 G A 48 100 BRCA TCGA-A2-A0SW XPOT SNP Silent 12 64808758 G A 33 60 BRCA TCGA-A2-A0SW CNOT2 SNP Missense_Mutation 12 70724100 G T 45 100 BRCA TCGA-A2-A0SW PTPRB SNP Missense_Mutation 12 70932782 C T 19 78 BRCA TCGA-A2-A0SW SUCLA2 SNP Missense_Mutation 13 48528339 A C 2 88 BRCA TCGA-A2-A0SW NID2 SNP Missense_Mutation 14 52481149 C G 21 20 BRCA TCGA-A2-A0SW PPP4R4 SNP Missense_Mutation 14 94741774 T C 61 69 BRCA TCGA-A2-A0SW SERPINA4 DEL Frame_Shift_Del 14 95029874 C - 29 67 BRCA TCGA-A2-A0SW MCTP2 DEL Frame_Shift_Del 15 95022241 G - 39 68 BRCA TCGA-A2-A0SW FAM20A SNP Missense_Mutation 17 66538936 C T 31 100 BRCA TCGA-A2-A0SW ABCA10 SNP Missense_Mutation 17 67148549 C T 29 68 BRCA TCGA-A2-A0SW TP53 SNP Missense_Mutation 17 7577121 G A 38 65 BRCA TCGA-A2-A0SW SERPINB12 SNP Missense_Mutation 18 61225627 C G 18 50 BRCA TCGA-A2-A0SW RTBDN SNP Silent 19 12945620 T C 55 50 BRCA TCGA-A2-A0SW RPL18A SNP Missense_Mutation 19 17974037 C T 19 80 BRCA TCGA-A2-A0SW XRCC1 SNP Missense_Mutation 19 44079136 G A 33 69 BRCA TCGA-A2-A0SW ZNF160 SNP Missense_Mutation 19 53571424 C T 19 61 BRCA TCGA-A2-A0SW MERTK DEL Frame_Shift_Del 2 112767613 ACTTTATTCCCGATTGGAG - 14 47 BRCA TCGA-A2-A0SW ZC3H6 INS Frame_Shift_Ins 2 113088668 - A 33 84 BRCA TCGA-A2-A0SW NCKAP5 SNP Missense_Mutation 2 133887613 T C 54 83 BRCA TCGA-A2-A0SW TTN SNP Missense_Mutation 2 179614907 T C 54 52 BRCA TCGA-A2-A0SW GPR55 SNP Missense_Mutation 2 231775323 G A 39 53 BRCA TCGA-A2-A0SW CHRND SNP Missense_Mutation 2 233399897 G T 44 62 BRCA TCGA-A2-A0SW MYEOV2 INS Frame_Shift_Ins 2 241066091 - A 49 35 BRCA TCGA-A2-A0SW KANSL3 DEL In_Frame_Del 2 97267981 GTG - 36 81 BRCA TCGA-A2-A0SW L3MBTL SNP Missense_Mutation 20 42143341 C T 27 60 BRCA TCGA-A2-A0SW SNP Missense_Mutation 20 56063465 C G 32 62 BRCA TCGA-A2-A0SW PAK7 SNP Missense_Mutation 20 9546839 T G 51 64 BRCA TCGA-A2-A0SW SULT4A1 SNP Silent 22 44237700 C T 23 7 BRCA TCGA-A2-A0SW CSTF2 SNP Splice_Site 23 100087722 G T 33 75 BRCA TCGA-A2-A0SW ZNF280C SNP Missense_Mutation 23 129354447 C G 30 82 BRCA TCGA-A2-A0SW FIGF SNP Missense_Mutation 23 15364358 T C 51 59 BRCA TCGA-A2-A0SW MUC4 SNP Missense_Mutation 3 195509676 C G 24 51 BRCA TCGA-A2-A0SW MUC4 SNP Missense_Mutation 3 195511180 G A 45 55 BRCA TCGA-A2-A0SW MUC4 SNP Missense_Mutation 3 195514948 G A 35 73 BRCA TCGA-A2-A0SW LRBA SNP Missense_Mutation 4 151829547 G C 41 100 BRCA TCGA-A2-A0SW FGA SNP Missense_Mutation 4 155506918 T C 59 40 BRCA TCGA-A2-A0SW HTT SNP Silent 4 3123086 C T 25 57 BRCA TCGA-A2-A0SW HTRA3 SNP Silent 4 8294069 C T 20 77 BRCA TCGA-A2-A0SW GPRIN3 SNP Missense_Mutation 4 90169167 A T 12 89 BRCA TCGA-A2-A0SW STARD4 SNP Missense_Mutation 5 110835655 G C 45 90 BRCA TCGA-A2-A0SW MARCH3 SNP Silent 5 126250790 G A 40 50 BRCA TCGA-A2-A0SW PCDHB7 SNP Missense_Mutation 5 140554481 G T 44 55 BRCA TCGA-A2-A0SW GNB2L1 SNP Missense_Mutation 5 180669195 A C 7 89 BRCA TCGA-A2-A0SW CDH6 SNP Missense_Mutation 5 31317975 C T 19 76 BRCA TCGA-A2-A0SW PIK3R1 INS In_Frame_Ins 5 67589630 - GATTATATGAAG 15 68 BRCA TCGA-A2-A0SW CPED1 SNP Missense_Mutation 7 120782056 T G 51 62 BRCA TCGA-A2-A0SW VWDE SNP Silent 7 12401070 A G 10 51 BRCA TCGA-A2-A0SW CPA5 SNP Silent 7 130007391 C T 23 49 BRCA TCGA-A2-A0SW PLXNA4 SNP Splice_site 7 131895703 G A 33 100 BRCA TCGA-A2-A0SW HOXA3 SNP Missense_Mutation 7 27148007 C T 19 97 BRCA TCGA-A2-A0SW SLC29A4 SNP Missense_Mutation 7 5339011 C T 26 93 BRCA TCGA-A2-A0SW ZNF107 SNP Missense_Mutation 7 64168226 A G 3 49 BRCA TCGA-A2-A0SW GTF2IRD2B SNP Silent 7 74538956 A G 7 39 BRCA TCGA-A2-A0SW ABCB1 SNP Silent 7 87175254 T C 54 49 BRCA TCGA-A2-A0SW COL14A1 SNP Missense_Mutation 8 121357751 A G 6 50 BRCA TCGA-A2-A0SW ZNF251 SNP Missense_Mutation 8 145948252 A G 4 60 BRCA TCGA-A2-A0SW EFHA2 SNP Silent 8 16942807 G A 41 97 BRCA TCGA-A2-A0SW HR SNP Missense_Mutation 8 21978705 C T 19 64 BRCA TCGA-A2-A0SW CSMD1 SNP Silent 8 2832073 G A 37 41 BRCA TCGA-A2-A0SW DKK4 SNP Splice_site 8 42232280 C T 24 53 BRCA TCGA-A2-A0SX IVL SNP Silent 1 152882981 A T 6 45 BRCA TCGA-A2-A0SX ARHGEF2 SNP Missense_Mutation 1 155921009 C T 29 67 BRCA TCGA-A2-A0SX SMYD2 SNP Silent 1 214491454 A G 4 51 BRCA TCGA-A2-A0SX MTR SNP Missense_Mutation 1 237015858 C T 30 100 BRCA TCGA-A2-A0SX MTR SNP Missense_Mutation 1 237023136 C A 29 56 BRCA TCGA-A2-A0SX SYCE1 SNP Splice_site 10 135370263 G A 40 28 BRCA TCGA-A2-A0SX LGR4 SNP Silent 11 27393924 A C 3 54 BRCA TCGA-A2-A0SX ANKRD11 SNP Missense_Mutation 16 89349106 C T 29 100 BRCA TCGA-A2-A0SX MYH13 SNP Missense_Mutation 17 10248682 C T 28 66 BRCA TCGA-A2-A0SX CACNB1 SNP Missense_Mutation 17 37347809 G T 33 97 BRCA TCGA-A2-A0SX TP53 SNP Missense_Mutation 17 7578253 C A 30 96 BRCA TCGA-A2-A0SX CHST9 SNP Missense_Mutation 18 24497058 T G 52 52 BRCA TCGA-A2-A0SX NOTCH3 SNP Missense_Mutation 19 15281551 C T 27 88 BRCA TCGA-A2-A0SX KIR2DL1 SNP Missense_Mutation 19 55284926 G A 38 50 BRCA TCGA-A2-A0SX FARP2 SNP Splice_Site 2 242312707 T A 57 81 BRCA TCGA-A2-A0SX SOS1 SNP Missense_Mutation 2 39281877 T C 60 89 BRCA TCGA-A2-A0SX RHOQ SNP Silent 2 46803351 A G 4 58 BRCA TCGA-A2-A0SX CTNNA2 SNP Silent 2 80136851 C T 27 40 BRCA TCGA-A2-A0SX ATP9A SNP Missense_Mutation 20 50273503 C T 19 84 BRCA TCGA-A2-A0SX KCNJ6 SNP Missense_Mutation 21 39087178 C A 29 50 BRCA TCGA-A2-A0SX STAG2 SNP Nonsense_Mutation 23 123195704 G T 43 97 BRCA TCGA-A2-A0SX PPEF1 SNP Nonsense_Mutation 23 18800500 G T 33 92 BRCA TCGA-A2-A0SX BMP15 SNP Silent 23 50659301 T C 60 52 BRCA TCGA-A2-A0SX ADPRH SNP Missense_Mutation 3 119306694 G A 43 48 BRCA TCGA-A2-A0SX DROSHA SNP Missense_Mutation 5 31526807 A C 1 70 BRCA TCGA-A2-A0SX HIST1H3B SNP Missense_Mutation 6 26031937 C T 20 98 BRCA TCGA-A2-A0SX C6orf150 SNP Missense_Mutation 6 74161777 G T 42 54 BRCA TCGA-A2-A0SX MICALL2 SNP Missense_Mutation 7 1477788 G T 40 46 BRCA TCGA-A2-A0SX KIAA2026 SNP Missense_Mutation 9 5921255 G T 45 71 BRCA TCGA-A2-A0SY NBPF10 SNP Missense_Mutation 1 145299900 C G 29 45 BRCA TCGA-A2-A0SY ITGA10 SNP Silent 1 145538042 C A 32 61 BRCA TCGA-A2-A0SY PRRC2C SNP Nonsense_Mutation 1 171535915 C G 29 82 BRCA TCGA-A2-A0SY NCF2 SNP Missense_Mutation 1 183542412 C T 29 71 BRCA TCGA-A2-A0SY ASPM SNP Missense_Mutation 1 197071830 C T 23 52 BRCA TCGA-A2-A0SY TRAF3IP3 SNP Missense_Mutation 1 209933475 G A 45 66 BRCA TCGA-A2-A0SY BROX SNP Silent 1 222892339 G A 33 55 BRCA TCGA-A2-A0SY ACTN2 SNP Silent 1 236924389 C T 29 80 BRCA TCGA-A2-A0SY MTR SNP Silent 1 236988693 C T 18 50 BRCA TCGA-A2-A0SY OR2B11 SNP Missense_Mutation 1 247614687 C T 29 62 BRCA TCGA-A2-A0SY OR14I1 SNP Nonsense_Mutation 1 248845388 G C 45 61 BRCA TCGA-A2-A0SY MEGF6 SNP Missense_Mutation 1 3519148 C G 29 68 BRCA TCGA-A2-A0SY PLK3 SNP Silent 1 45271021 C T 30 16 BRCA TCGA-A2-A0SY PLK3 SNP Silent 1 45271308 C G 30 40 BRCA TCGA-A2-A0SY ABCA4 SNP Missense_Mutation 1 94510272 T A 60 93 BRCA TCGA-A2-A0SY HPS1 SNP Missense_Mutation 10 100191027 G A 43 82 BRCA TCGA-A2-A0SY SLK SNP Missense_Mutation 10 105779531 G A 45 96 BRCA TCGA-A2-A0SY SLK SNP Missense_Mutation 10 105779657 C G 29 85 BRCA TCGA-A2-A0SY LRRC27 SNP Missense_Mutation 10 134165200 G A 37 62 BRCA TCGA-A2-A0SY FAM188A SNP Nonsense_Mutation 10 15858876 C T 30 97 BRCA TCGA-A2-A0SY NRP1 SNP Missense_Mutation 10 33502481 C T 29 78 BRCA TCGA-A2-A0SY C10orf12 SNP Silent 10 98742128 A C 7 37 BRCA TCGA-A2-A0SY ACCSL SNP Silent 11 44069730 G A 37 51 BRCA TCGA-A2-A0SY MS4A13 SNP Silent 11 60292781 C T 17 45 BRCA TCGA-A2-A0SY SMPD1 SNP Silent 11 6412017 T G 54 49 BRCA TCGA-A2-A0SY RNF121 SNP Missense_Mutation 11 71706538 G C 33 97 BRCA TCGA-A2-A0SY DNAJB13 SNP Silent 11 73676008 C G 31 45 BRCA TCGA-A2-A0SY NOX4 SNP Nonsense_Mutation 11 89135609 G C 45 62 BRCA TCGA-A2-A0SY TCP11L2 SNP Missense_Mutation 12 106734763 C G 32 61 BRCA TCGA-A2-A0SY TPCN1 SNP Missense_Mutation 12 113731077 C T 17 51 BRCA TCGA-A2-A0SY ATP6V0A2 SNP Missense_Mutation 12 124218479 G C 36 57 BRCA TCGA-A2-A0SY CACNA1C SNP Missense_Mutation 12 2622018 G C 33 98 BRCA TCGA-A2-A0SY FAM60A SNP Missense_Mutation 12 31451107 C T 31 99 BRCA TCGA-A2-A0SY KIF5A SNP Splice_site 12 57969055 G A 35 96 BRCA TCGA-A2-A0SY ATP2B1 SNP Missense_Mutation 12 90028579 C T 32 100 BRCA TCGA-A2-A0SY LRCH1 SNP Missense_Mutation 13 47286664 G C 33 58 BRCA TCGA-A2-A0SY TGDS SNP Missense_Mutation 13 95232153 C T 32 88 BRCA TCGA-A2-A0SY FOXA1 SNP Missense_Mutation 14 38061250 G A 46 93 BRCA TCGA-A2-A0SY TOMM20L SNP Missense_Mutation 14 58875253 G C 45 68 BRCA TCGA-A2-A0SY OR4F15 SNP Silent 15 102358587 C G 32 55 BRCA TCGA-A2-A0SY HOMER2 SNP Missense_Mutation 15 83518532 C T 30 81 BRCA TCGA-A2-A0SY CDH1 INS Frame_Shift_Ins 16 68772203 - CA 54 55 BRCA TCGA-A2-A0SY FLII SNP Silent 17 18157406 C T 29 75 BRCA TCGA-A2-A0SY PLXDC1 SNP Splice_site 17 37265502 G A 37 68 BRCA TCGA-A2-A0SY FKBP10 SNP Missense_Mutation 17 39977965 G A 41 73 BRCA TCGA-A2-A0SY KLHL11 SNP Missense_Mutation 17 40021290 G A 39 74 BRCA TCGA-A2-A0SY STAT5B SNP Silent 17 40370189 G C 45 64 BRCA TCGA-A2-A0SY NPEPPS SNP Missense_Mutation 17 45664628 C G 30 100 BRCA TCGA-A2-A0SY TRIM25 SNP Silent 17 54990828 G A 46 66 BRCA TCGA-A2-A0SY SRSF1 SNP Silent 17 56084325 G A 37 58 BRCA TCGA-A2-A0SY CACNG4 SNP Missense_Mutation 17 65026894 C T 31 85 BRCA TCGA-A2-A0SY GPS2 DEL Frame_Shift_Del 17 7217617 C - 30 93 BRCA TCGA-A2-A0SY RAB37 SNP Missense_Mutation 17 72739463 C G 32 93 BRCA TCGA-A2-A0SY METTL23 SNP Missense_Mutation 17 74729730 G C 45 73 BRCA TCGA-A2-A0SY PPP1R27 SNP Missense_Mutation 17 79792496 C T 30 94 BRCA TCGA-A2-A0SY EMR2 SNP Missense_Mutation 19 14884796 G T 45 61 BRCA TCGA-A2-A0SY ZNF567 SNP Missense_Mutation 19 37211247 T A 58 59 BRCA TCGA-A2-A0SY HRC SNP Missense_Mutation 19 49657744 C T 29 58 BRCA TCGA-A2-A0SY HRC SNP Nonsense_Mutation 19 49657822 C A 29 60 BRCA TCGA-A2-A0SY TRPM4 SNP Silent 19 49671554 C T 31 41 BRCA TCGA-A2-A0SY CATSPERD SNP Silent 19 5724831 G A 45 58 BRCA TCGA-A2-A0SY C3 SNP Missense_Mutation 19 6712586 G A 33 93 BRCA TCGA-A2-A0SY WDR33 SNP Missense_Mutation 2 128476996 G C 33 58 BRCA TCGA-A2-A0SY SCN1A SNP Silent 2 166848244 G C 41 48 BRCA TCGA-A2-A0SY TTN SNP Missense_Mutation 2 179560781 C G 32 78 BRCA TCGA-A2-A0SY TTN SNP Splice_Site 2 179584560 C G 32 100 BRCA TCGA-A2-A0SY APOB SNP Silent 2 21247970 A G 6 50 BRCA TCGA-A2-A0SY PAX3 SNP Missense_Mutation 2 223158461 G A 41 51 BRCA TCGA-A2-A0SY KIF1A SNP Missense_Mutation 2 241712662 C A 23 94 BRCA TCGA-A2-A0SY DNAH6 SNP Missense_Mutation 2 84777043 G C 33 80 BRCA TCGA-A2-A0SY CTCFL SNP Missense_Mutation 20 56094287 G A 38 51 BRCA TCGA-A2-A0SY OPRL1 SNP Missense_Mutation 20 62730133 C T 19 51 BRCA TCGA-A2-A0SY SCAF4 INS Frame_Shift_Ins 21 33043723 - CT 26 63 BRCA TCGA-A2-A0SY THAP7 SNP Missense_Mutation 22 21354267 C G 30 79 BRCA TCGA-A2-A0SY LRCH2 SNP Missense_Mutation 23 114391183 G A 36 49 BRCA TCGA-A2-A0SY THOC2 SNP Silent 23 122820419 C T 18 45 BRCA TCGA-A2-A0SY SMARCA1 SNP Missense_Mutation 23 128631942 G C 45 96 BRCA TCGA-A2-A0SY IL3RA SNP Missense_Mutation 23 1497591 G A 39 48 BRCA TCGA-A2-A0SY NHS SNP Missense_Mutation 23 17746433 G A 45 96 BRCA TCGA-A2-A0SY TAB3 SNP Missense_Mutation 23 30872359 C G 32 79 BRCA TCGA-A2-A0SY DDX3X SNP Silent 23 41202029 G A 33 77 BRCA TCGA-A2-A0SY PIM2 SNP Missense_Mutation 23 48771429 C G 21 49 BRCA TCGA-A2-A0SY FAM123B SNP Silent 23 63409936 A G 7 55 BRCA TCGA-A2-A0SY OTUD6A SNP Missense_Mutation 23 69283015 C T 19 51 BRCA TCGA-A2-A0SY SPICE1 SNP Missense_Mutation 3 113172603 G C 45 59 BRCA TCGA-A2-A0SY UMPS SNP Missense_Mutation 3 124456998 G C 45 80 BRCA TCGA-A2-A0SY PIK3CB SNP Missense_Mutation 3 138426040 C G 32 51 BRCA TCGA-A2-A0SY CHST2 SNP Missense_Mutation 3 142840752 G A 38 83 BRCA TCGA-A2-A0SY PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-A2-A0SY MCF2L2 SNP Missense_Mutation 3 183041052 G A 37 56 BRCA TCGA-A2-A0SY RARB SNP Missense_Mutation 3 25502710 G C 45 100 BRCA TCGA-A2-A0SY TRANK1 SNP Silent 3 36902452 G A 45 57 BRCA TCGA-A2-A0SY TRANK1 SNP Missense_Mutation 3 36902596 G C 45 54 BRCA TCGA-A2-A0SY TGM4 SNP Missense_Mutation 3 44945471 G A 37 51 BRCA TCGA-A2-A0SY GRM2 SNP Silent 3 51743248 C T 26 53 BRCA TCGA-A2-A0SY CACNA1D SNP Missense_Mutation 3 53757826 A G 10 72 BRCA TCGA-A2-A0SY SEC24B SNP Silent 4 110448569 C T 32 53 BRCA TCGA-A2-A0SY LARP7 SNP Missense_Mutation 4 113568490 C G 32 90 BRCA TCGA-A2-A0SY PRMT10 SNP Nonsense_Mutation 4 148564057 G A 45 83 BRCA TCGA-A2-A0SY FSTL5 SNP Missense_Mutation 4 163032438 C T 29 47 BRCA TCGA-A2-A0SY ADD1 SNP Missense_Mutation 4 2906605 G A 45 100 BRCA TCGA-A2-A0SY CWH43 SNP Missense_Mutation 4 49030703 G A 45 80 BRCA TCGA-A2-A0SY SRP72 SNP Silent 4 57355616 C T 29 65 BRCA TCGA-A2-A0SY ARHGAP24 SNP Silent 4 86916664 A T 9 42 BRCA TCGA-A2-A0SY GDF9 SNP Missense_Mutation 5 132197896 C G 32 52 BRCA TCGA-A2-A0SY AFF4 SNP Silent 5 132270412 G A 47 46 BRCA TCGA-A2-A0SY DNAH5 SNP Missense_Mutation 5 13752344 G C 33 87 BRCA TCGA-A2-A0SY C5orf65 SNP Silent 5 138728026 C T 24 51 BRCA TCGA-A2-A0SY PCDHGA11 SNP Missense_Mutation 5 140802020 G A 33 60 BRCA TCGA-A2-A0SY ENSG00000218227 SNP Missense_Mutation 5 177482635 G A 38 63 BRCA TCGA-A2-A0SY ADAMTS2 SNP Missense_Mutation 5 178552015 C T 31 58 BRCA TCGA-A2-A0SY MAST4 SNP Missense_Mutation 5 66396326 C G 17 100 BRCA TCGA-A2-A0SY CMYA5 SNP Missense_Mutation 5 79095305 G C 33 56 BRCA TCGA-A2-A0SY KIAA0825 SNP Silent 5 93732078 C T 29 60 BRCA TCGA-A2-A0SY ATG5 SNP Missense_Mutation 6 106740932 G C 33 88 BRCA TCGA-A2-A0SY LAMA2 SNP Missense_Mutation 6 129781390 G C 33 100 BRCA TCGA-A2-A0SY ARG1 SNP Missense_Mutation 6 131903781 C G 32 55 BRCA TCGA-A2-A0SY MYB DEL Frame_Shift_Del 6 135515023 CAATGTCCCTCAGC - 29 68 BRCA TCGA-A2-A0SY HLA-G SNP Silent 6 29796381 C T 27 47 BRCA TCGA-A2-A0SY NQO2 SNP Missense_Mutation 6 3017179 G A 41 71 BRCA TCGA-A2-A0SY TINAG SNP Missense_Mutation 6 54191643 G C 33 66 BRCA TCGA-A2-A0SY EYS SNP Missense_Mutation 6 65301057 C T 19 56 BRCA TCGA-A2-A0SY PPP1R3A SNP Missense_Mutation 7 113558451 C G 32 84 BRCA TCGA-A2-A0SY KCND2 SNP Missense_Mutation 7 120387763 G C 33 98 BRCA TCGA-A2-A0SY ENSG00000183470 SNP Missense_Mutation 7 132412276 C G 32 61 BRCA TCGA-A2-A0SY SNX13 SNP Missense_Mutation 7 17913164 C T 31 99 BRCA TCGA-A2-A0SY MAGI2 SNP Missense_Mutation 7 77885377 C T 31 100 BRCA TCGA-A2-A0SY EIF2C2 SNP Missense_Mutation 8 141570514 G A 41 99 BRCA TCGA-A2-A0SY HEATR7A SNP Silent 8 145255363 C T 24 52 BRCA TCGA-A2-A0SY HSF1 SNP Missense_Mutation 8 145537880 G A 45 78 BRCA TCGA-A2-A0SY ARHGEF10 SNP Missense_Mutation 8 1844604 G C 45 95 BRCA TCGA-A2-A0SY LPL SNP Silent 8 19818493 C G 29 46 BRCA TCGA-A2-A0SY GFRA2 SNP Missense_Mutation 8 21608226 G T 41 97 BRCA TCGA-A2-A0SY AGPAT6 SNP Missense_Mutation 8 41471927 A G 13 69 BRCA TCGA-A2-A0SY KCNV2 SNP Silent 9 2729631 G A 33 42 BRCA TCGA-A2-A0SY TAF1L SNP Missense_Mutation 9 32633918 G C 33 53 BRCA TCGA-A2-A0SY DMRT1 SNP Nonsense_Mutation 9 847104 C T 29 76 BRCA TCGA-A2-A0T0 AGL SNP Missense_Mutation 1 100330007 G C 46 87 BRCA TCGA-A2-A0T0 NTNG1 SNP Silent 1 107963749 T C 63 89 BRCA TCGA-A2-A0T0 CELSR2 SNP Missense_Mutation 1 109815559 G A 41 66 BRCA TCGA-A2-A0T0 FCGR1B SNP Nonsense_Mutation 1 120927202 G A 45 53 BRCA TCGA-A2-A0T0 TDRKH SNP Missense_Mutation 1 151747553 C G 17 45 BRCA TCGA-A2-A0T0 PGLYRP4 SNP Silent 1 153312921 G A 35 46 BRCA TCGA-A2-A0T0 ATP8B2 SNP Silent 1 154300293 T G 55 49 BRCA TCGA-A2-A0T0 METTL11B SNP Missense_Mutation 1 170129793 G T 33 80 BRCA TCGA-A2-A0T0 UCHL5 SNP Missense_Mutation 1 192998533 T C 59 89 BRCA TCGA-A2-A0T0 UBR4 SNP Missense_Mutation 1 19464664 T G 54 90 BRCA TCGA-A2-A0T0 LMOD1 SNP Missense_Mutation 1 201869266 T C 54 55 BRCA TCGA-A2-A0T0 SNP Missense_Mutation 1 211380707 G C 41 81 BRCA TCGA-A2-A0T0 HSPG2 SNP Missense_Mutation 1 22206964 G C 44 71 BRCA TCGA-A2-A0T0 C1orf65 SNP Missense_Mutation 1 223567939 C G 26 60 BRCA TCGA-A2-A0T0 PCNXL2 SNP Missense_Mutation 1 233395012 G C 38 52 BRCA TCGA-A2-A0T0 HEATR1 SNP Missense_Mutation 1 236739603 C G 29 53 BRCA TCGA-A2-A0T0 FMN2 SNP Missense_Mutation 1 240555839 T G 52 46 BRCA TCGA-A2-A0T0 AHCTF1 SNP Missense_Mutation 1 247067282 T A 56 68 BRCA TCGA-A2-A0T0 OR2G3 SNP Missense_Mutation 1 247768964 T C 60 56 BRCA TCGA-A2-A0T0 OR2T34 SNP Silent 1 248737771 G T 47 38 BRCA TCGA-A2-A0T0 OR2T10 SNP Missense_Mutation 1 248756246 G T 41 68 BRCA TCGA-A2-A0T0 CSMD2 SNP Missense_Mutation 1 34191097 C T 31 100 BRCA TCGA-A2-A0T0 DNALI1 SNP Missense_Mutation 1 38030643 T C 52 87 BRCA TCGA-A2-A0T0 RSPO1 SNP Silent 1 38078565 G T 42 58 BRCA TCGA-A2-A0T0 HEATR8 SNP Missense_Mutation 1 55175761 C A 18 64 BRCA TCGA-A2-A0T0 ABCA4 SNP Missense_Mutation 1 94543428 G T 43 75 BRCA TCGA-A2-A0T0 AGRN SNP Silent 1 957718 G A 41 56 BRCA TCGA-A2-A0T0 PNLIPRP3 SNP Missense_Mutation 10 118236225 A T 1 71 BRCA TCGA-A2-A0T0 WDR11 DEL Frame_Shift_Del 10 122646224 AATCTGAACTT - 1 91 BRCA TCGA-A2-A0T0 ZNF438 SNP Nonsense_Mutation 10 31139084 G A 46 81 BRCA TCGA-A2-A0T0 TET1 SNP Missense_Mutation 10 70332118 G A 35 59 BRCA TCGA-A2-A0T0 SFMBT2 SNP Silent 10 7318923 T C 52 31 BRCA TCGA-A2-A0T0 NPAT SNP Missense_Mutation 11 108040720 C T 18 87 BRCA TCGA-A2-A0T0 DSCAML1 DEL In_Frame_Del 11 117302417 GACTTCACATTCTTCCTG - 45 82 BRCA TCGA-A2-A0T0 NUP98 DEL Frame_Shift_Del 11 3752719 CCGGACT - 26 44 BRCA TCGA-A2-A0T0 MADD SNP Silent 11 47296330 C A 32 77 BRCA TCGA-A2-A0T0 MS4A15 SNP Silent 11 60540906 G A 39 39 BRCA TCGA-A2-A0T0 CNGA4 DNP Missense_Mutation 11 6262921 TG CT 55 88 BRCA TCGA-A2-A0T0 DEAF1 SNP Silent 11 654016 G A 38 49 BRCA TCGA-A2-A0T0 ACTN3 SNP Missense_Mutation 11 66329595 G A 41 94 BRCA TCGA-A2-A0T0 TCIRG1 SNP Missense_Mutation 11 67818248 A C 5 85 BRCA TCGA-A2-A0T0 PLBD2 SNP Missense_Mutation 12 113812735 A G 6 70 BRCA TCGA-A2-A0T0 PRB4 SNP Missense_Mutation 12 11461466 G C 47 51 BRCA TCGA-A2-A0T0 CLIP1 SNP Silent 12 122812589 G A 34 28 BRCA TCGA-A2-A0T0 KRT85 SNP Missense_Mutation 12 52760852 T A 58 90 BRCA TCGA-A2-A0T0 KRT73 SNP Missense_Mutation 12 53002195 C T 26 32 BRCA TCGA-A2-A0T0 SILV SNP Silent 12 56351004 A G 7 48 BRCA TCGA-A2-A0T0 BRCA2 SNP Nonsense_Mutation 13 32953476 T G 61 73 BRCA TCGA-A2-A0T0 MYCBP2 SNP Silent 13 77754280 C T 19 40 BRCA TCGA-A2-A0T0 SLITRK6 SNP Nonsense_Mutation 13 86368270 C A 21 80 BRCA TCGA-A2-A0T0 TECPR2 SNP Missense_Mutation 14 102901119 C G 28 50 BRCA TCGA-A2-A0T0 OR4M1 SNP Missense_Mutation 14 20249295 G A 36 55 BRCA TCGA-A2-A0T0 AKAP6 SNP Missense_Mutation 14 33293160 T A 50 66 BRCA TCGA-A2-A0T0 CPSF2 SNP Silent 14 92628064 A G 16 53 BRCA TCGA-A2-A0T0 MAPK6 SNP Silent 15 52356303 T C 60 52 BRCA TCGA-A2-A0T0 TCF12 SNP Missense_Mutation 15 57545524 C A 28 100 BRCA TCGA-A2-A0T0 PRM3 SNP Splice_site 16 11367145 G T 41 62 BRCA TCGA-A2-A0T0 MYH11 SNP Missense_Mutation 16 15833955 C G 30 94 BRCA TCGA-A2-A0T0 MYH11 SNP Missense_Mutation 16 15850316 G T 42 98 BRCA TCGA-A2-A0T0 SMG1 SNP Missense_Mutation 16 18869547 C A 30 74 BRCA TCGA-A2-A0T0 ACSM5 SNP Splice_Site 16 20442397 T C 57 77 BRCA TCGA-A2-A0T0 ZP2 SNP Missense_Mutation 16 21212763 C G 18 67 BRCA TCGA-A2-A0T0 ZNF434 SNP Missense_Mutation 16 3433091 G C 47 52 BRCA TCGA-A2-A0T0 VASN SNP Missense_Mutation 16 4431912 C A 26 83 BRCA TCGA-A2-A0T0 ABCC12 SNP Missense_Mutation 16 48167699 G T 47 88 BRCA TCGA-A2-A0T0 NUDT21 SNP Missense_Mutation 16 56481707 A C 9 93 BRCA TCGA-A2-A0T0 ZNRF1 SNP Missense_Mutation 16 75138732 C G 28 72 BRCA TCGA-A2-A0T0 EPN2 DEL Frame_Shift_Del 17 19235190 CCCAAAACAATGGAACTACCAG - 30 95 BRCA TCGA-A2-A0T0 IFT20 SNP Splice_Site 17 26662497 A G 16 33 BRCA TCGA-A2-A0T0 KAT2A SNP Splice_site 17 40266620 G A 45 52 BRCA TCGA-A2-A0T0 STAT3 SNP Silent 17 40468877 G A 46 74 BRCA TCGA-A2-A0T0 EPN3 SNP Missense_Mutation 17 48614030 C T 31 99 BRCA TCGA-A2-A0T0 ABCA6 SNP Missense_Mutation 17 67094096 G C 41 75 BRCA TCGA-A2-A0T0 KIAA0195 SNP Missense_Mutation 17 73491664 C G 24 63 BRCA TCGA-A2-A0T0 POLR2A SNP Missense_Mutation 17 7405859 C G 29 68 BRCA TCGA-A2-A0T0 P4HB SNP Missense_Mutation 17 79803027 T A 50 64 BRCA TCGA-A2-A0T0 ANKRD30B SNP Silent 18 14782552 T C 54 37 BRCA TCGA-A2-A0T0 SMARCA4 SNP Nonsense_Mutation 19 11170528 G T 41 94 BRCA TCGA-A2-A0T0 CYP4F2 SNP Missense_Mutation 19 15990642 G C 47 82 BRCA TCGA-A2-A0T0 CYP4F11 SNP Missense_Mutation 19 16034822 G C 33 52 BRCA TCGA-A2-A0T0 ZNF101 SNP Missense_Mutation 19 19790274 G A 38 43 BRCA TCGA-A2-A0T0 ZNF528 SNP Splice_site 19 52918378 G C 33 52 BRCA TCGA-A2-A0T0 GPR108 SNP Missense_Mutation 19 6731281 C T 19 52 BRCA TCGA-A2-A0T0 MUC16 SNP Missense_Mutation 19 9086543 G T 41 48 BRCA TCGA-A2-A0T0 OR7D2 SNP Missense_Mutation 19 9297338 A G 2 50 BRCA TCGA-A2-A0T0 ZNF560 SNP Missense_Mutation 19 9578743 C A 24 50 BRCA TCGA-A2-A0T0 POLR1B SNP Splice_Site 2 113321941 A G 7 90 BRCA TCGA-A2-A0T0 MAP3K2 SNP Silent 2 128084359 T A 55 42 BRCA TCGA-A2-A0T0 MYO7B SNP Missense_Mutation 2 128366364 G A 40 45 BRCA TCGA-A2-A0T0 NBAS SNP Missense_Mutation 2 15378705 C T 28 51 BRCA TCGA-A2-A0T0 TTN SNP Missense_Mutation 2 179398516 G A 39 64 BRCA TCGA-A2-A0T0 TTN SNP Nonsense_Mutation 2 179437368 A T 16 52 BRCA TCGA-A2-A0T0 TTN DEL In_Frame_Del 2 179441108 CAGTGA - 29 100 BRCA TCGA-A2-A0T0 HIBCH SNP Missense_Mutation 2 191117010 C G 24 93 BRCA TCGA-A2-A0T0 COL4A4 SNP Missense_Mutation 2 227886853 G C 43 66 BRCA TCGA-A2-A0T0 CAD DNP Missense_Mutation 2 27465275 GG CT 43 97 BRCA TCGA-A2-A0T0 ALK DEL In_Frame_Del 2 29432670 ATCCCG - 8 90 BRCA TCGA-A2-A0T0 KIAA1841 SNP Missense_Mutation 2 61343192 A G 3 68 BRCA TCGA-A2-A0T0 SFXN5 SNP Splice_Site 2 73215386 C T 18 85 BRCA TCGA-A2-A0T0 ANKRD36C SNP Missense_Mutation 2 96546211 C T 28 51 BRCA TCGA-A2-A0T0 SSTR4 SNP Nonsense_Mutation 20 23017141 G T 41 76 BRCA TCGA-A2-A0T0 BPIFB6 SNP Silent 20 31627293 C T 25 50 BRCA TCGA-A2-A0T0 RAB22A DNP Missense_Mutation 20 56929271 AG CT 11 89 BRCA TCGA-A2-A0T0 USP25 SNP Missense_Mutation 21 17205712 C A 17 80 BRCA TCGA-A2-A0T0 KRTAP20-3 SNP Silent 21 32015243 C A 28 56 BRCA TCGA-A2-A0T0 TTC3 SNP Missense_Mutation 21 38567987 G C 36 53 BRCA TCGA-A2-A0T0 MX1 SNP Silent 21 42824598 G A 45 36 BRCA TCGA-A2-A0T0 CYTSA SNP Missense_Mutation 22 24717313 C T 20 82 BRCA TCGA-A2-A0T0 ADSL SNP Missense_Mutation 22 40746017 C A 32 99 BRCA TCGA-A2-A0T0 PHF21B SNP Silent 22 45312307 G A 37 57 BRCA TCGA-A2-A0T0 TRABD SNP Missense_Mutation 22 50632861 G T 42 72 BRCA TCGA-A2-A0T0 ARMCX1 SNP Missense_Mutation 23 100807921 G A 38 66 BRCA TCGA-A2-A0T0 CDR1 SNP Missense_Mutation 23 139866173 T G 58 49 BRCA TCGA-A2-A0T0 ZFP92 SNP Missense_Mutation 23 152686529 G A 39 61 BRCA TCGA-A2-A0T0 ABCD1 SNP Missense_Mutation 23 152991542 G A 39 74 BRCA TCGA-A2-A0T0 CXorf22 SNP Missense_Mutation 23 35985882 A G 16 53 BRCA TCGA-A2-A0T0 ZNF81 SNP Missense_Mutation 23 47774342 G C 34 50 BRCA TCGA-A2-A0T0 HDAC6 SNP Silent 23 48682346 T C 55 42 BRCA TCGA-A2-A0T0 CCDC120 SNP Missense_Mutation 23 48925640 T C 56 55 BRCA TCGA-A2-A0T0 TIGIT SNP Missense_Mutation 3 114018446 G C 42 56 BRCA TCGA-A2-A0T0 TMEM39A SNP Silent 3 119150930 G C 33 57 BRCA TCGA-A2-A0T0 POPDC2 SNP Silent 3 119379073 C T 17 53 BRCA TCGA-A2-A0T0 CASR SNP Missense_Mutation 3 121980913 A T 6 78 BRCA TCGA-A2-A0T0 COL6A6 SNP Missense_Mutation 3 130284028 C A 25 68 BRCA TCGA-A2-A0T0 ARMC8 SNP Missense_Mutation 3 137983034 G C 48 97 BRCA TCGA-A2-A0T0 CEP70 SNP Missense_Mutation 3 138216888 G C 33 73 BRCA TCGA-A2-A0T0 CLSTN2 SNP Missense_Mutation 3 140123537 C A 30 97 BRCA TCGA-A2-A0T0 PLCL2 SNP Nonsense_Mutation 3 17053574 G A 41 65 BRCA TCGA-A2-A0T0 PLCL2 DEL Frame_Shift_Del 3 17131237 CTTTTGAAATATG - 32 91 BRCA TCGA-A2-A0T0 GP5 SNP Silent 3 194118427 C T 28 48 BRCA TCGA-A2-A0T0 UBE2E1 SNP Missense_Mutation 3 23932006 C G 22 100 BRCA TCGA-A2-A0T0 XIRP1 SNP Missense_Mutation 3 39229254 C T 29 45 BRCA TCGA-A2-A0T0 DALRD3 SNP Missense_Mutation 3 49053734 C A 22 80 BRCA TCGA-A2-A0T0 ITIH1 SNP Missense_Mutation 3 52820422 C G 24 78 BRCA TCGA-A2-A0T0 ROBO2 SNP Missense_Mutation 3 77614134 T C 59 94 BRCA TCGA-A2-A0T0 C4orf21 DEL Frame_Shift_Del 4 113483568 AAAGTAGTCCTGAATGTTTTTC - 13 48 BRCA TCGA-A2-A0T0 ANKRD50 SNP Missense_Mutation 4 125631416 G C 40 97 BRCA TCGA-A2-A0T0 ZNF827 SNP Missense_Mutation 4 146791465 C T 22 57 BRCA TCGA-A2-A0T0 CC2D2A SNP Missense_Mutation 4 15539732 A T 3 75 BRCA TCGA-A2-A0T0 CC2D2A SNP Silent 4 15539734 C T 27 47 BRCA TCGA-A2-A0T0 DDX60L SNP Missense_Mutation 4 169292767 T A 64 60 BRCA TCGA-A2-A0T0 LETM1 SNP Missense_Mutation 4 1838173 C T 29 95 BRCA TCGA-A2-A0T0 PDGFRA SNP Missense_Mutation 4 55156541 G C 40 100 BRCA TCGA-A2-A0T0 UGT2B15 SNP Missense_Mutation 4 69519794 T C 50 60 BRCA TCGA-A2-A0T0 ARHGAP24 SNP Splice_Site 4 86863218 G T 35 100 BRCA TCGA-A2-A0T0 HERC5 SNP Nonsense_Mutation 4 89388332 C A 29 69 BRCA TCGA-A2-A0T0 SLCO4C1 SNP Missense_Mutation 5 101572605 A G 2 70 BRCA TCGA-A2-A0T0 HSD17B4 SNP Missense_Mutation 5 118824925 C G 32 58 BRCA TCGA-A2-A0T0 ADAMTS19 SNP Missense_Mutation 5 128863507 C G 32 83 BRCA TCGA-A2-A0T0 HSPA4 SNP Missense_Mutation 5 132412489 G C 36 54 BRCA TCGA-A2-A0T0 DNAH5 SNP Nonsense_Mutation 5 13841155 G A 46 68 BRCA TCGA-A2-A0T0 PCDHB16 SNP Silent 5 140562836 C T 17 54 BRCA TCGA-A2-A0T0 PCDHB13 SNP Silent 5 140595171 G A 38 44 BRCA TCGA-A2-A0T0 GRIA1 SNP Missense_Mutation 5 153144138 G C 33 60 BRCA TCGA-A2-A0T0 C1QTNF2 SNP Missense_Mutation 5 159781785 G T 38 46 BRCA TCGA-A2-A0T0 DOCK2 SNP Missense_Mutation 5 169507239 G T 48 49 BRCA TCGA-A2-A0T0 ADAMTS2 SNP Silent 5 178585812 G A 41 60 BRCA TCGA-A2-A0T0 TARS SNP Silent 5 33456148 T C 49 61 BRCA TCGA-A2-A0T0 PELO SNP Missense_Mutation 5 52096347 G T 38 92 BRCA TCGA-A2-A0T0 LRRC70 SNP Nonsense_Mutation 5 61875866 C T 29 60 BRCA TCGA-A2-A0T0 ADAMTS6 SNP Missense_Mutation 5 64748724 G T 35 95 BRCA TCGA-A2-A0T0 ARRDC3 SNP Splice_Site 5 90671327 C T 18 99 BRCA TCGA-A2-A0T0 KIAA0825 SNP Missense_Mutation 5 93752964 G C 40 53 BRCA TCGA-A2-A0T0 HIST1H2BC SNP Silent 6 26123995 C G 29 58 BRCA TCGA-A2-A0T0 MSH5 SNP Splice_Site 6 31729393 G C 44 80 BRCA TCGA-A2-A0T0 ZNF318 SNP Missense_Mutation 6 43323219 C T 31 99 BRCA TCGA-A2-A0T0 COL12A1 SNP Missense_Mutation 6 75899454 A T 14 66 BRCA TCGA-A2-A0T0 RELN SNP Missense_Mutation 7 103216144 C A 32 96 BRCA TCGA-A2-A0T0 TAS2R16 SNP Missense_Mutation 7 122635007 A C 10 59 BRCA TCGA-A2-A0T0 GPR37 SNP Missense_Mutation 7 124387321 T G 55 79 BRCA TCGA-A2-A0T0 SP4 SNP Silent 7 21550872 C T 17 68 BRCA TCGA-A2-A0T0 DNAH11 SNP Silent 7 21659621 C T 19 48 BRCA TCGA-A2-A0T0 ABHD11 SNP Silent 7 73151593 A T 6 29 BRCA TCGA-A2-A0T0 ZNF394 SNP Missense_Mutation 7 99097679 T C 58 51 BRCA TCGA-A2-A0T0 UBR5 SNP Silent 8 103299695 G A 38 67 BRCA TCGA-A2-A0T0 PTK2 SNP Missense_Mutation 8 141753376 C A 30 85 BRCA TCGA-A2-A0T0 BAI1 DEL In_Frame_Del 8 143562899 GCT - 42 77 BRCA TCGA-A2-A0T0 BAI1 DEL Frame_Shift_Del 8 143562904 G - 34 71 BRCA TCGA-A2-A0T0 EEF1D SNP Silent 8 144669010 A T 15 42 BRCA TCGA-A2-A0T0 PLEC SNP Missense_Mutation 8 144994265 G C 43 73 BRCA TCGA-A2-A0T0 DOCK5 SNP Splice_site 8 25193755 G A 41 73 BRCA TCGA-A2-A0T0 UNC5D SNP Missense_Mutation 8 35541224 T A 58 77 BRCA TCGA-A2-A0T0 ASPH SNP Missense_Mutation 8 62563641 G C 41 55 BRCA TCGA-A2-A0T0 CSPP1 SNP Missense_Mutation 8 68089921 T C 61 73 BRCA TCGA-A2-A0T0 PREX2 SNP Missense_Mutation 8 69033276 T A 64 58 BRCA TCGA-A2-A0T0 CACNA1B SNP Missense_Mutation 9 140772590 T G 56 55 BRCA TCGA-A2-A0T0 ANKRD20A3 SNP Missense_Mutation 9 42410478 A T 4 52 BRCA TCGA-A2-A0T0 SYK SNP Missense_Mutation 9 93607735 C G 26 97 BRCA TCGA-A2-A0T1 LOC440563 SNP Missense_Mutation 1 13183440 G A 48 57 BRCA TCGA-A2-A0T1 IRF2BP2 SNP Missense_Mutation 1 234744272 G T 46 73 BRCA TCGA-A2-A0T1 FAM160A2 DEL Frame_Shift_Del 11 6232828 G - 47 98 BRCA TCGA-A2-A0T1 RPLP0 SNP Silent 12 120636935 A G 2 71 BRCA TCGA-A2-A0T1 LRRC10 DEL Frame_Shift_Del 12 70003803 A - 9 42 BRCA TCGA-A2-A0T1 MAP3K9 DEL Frame_Shift_Del 14 71197420 A - 9 77 BRCA TCGA-A2-A0T1 ADAMTS17 SNP Missense_Mutation 15 100871204 G A 41 78 BRCA TCGA-A2-A0T1 NPTN INS Frame_Shift_Ins 15 73889543 - A 17 100 BRCA TCGA-A2-A0T1 IL27 SNP Splice_Site 16 28515198 C A 17 72 BRCA TCGA-A2-A0T1 C17orf53 SNP Silent 17 42226188 C T 24 48 BRCA TCGA-A2-A0T1 TP53 SNP Missense_Mutation 17 7577121 G A 38 65 BRCA TCGA-A2-A0T1 INSIG2 SNP Missense_Mutation 2 118864382 A G 10 92 BRCA TCGA-A2-A0T1 ZNF142 SNP Silent 2 219509721 C T 26 47 BRCA TCGA-A2-A0T1 CASS4 SNP Missense_Mutation 20 54987537 A T 10 72 BRCA TCGA-A2-A0T1 MAGED1 DEL Frame_Shift_Del 23 51639818 G - 47 73 BRCA TCGA-A2-A0T1 HLTF SNP Missense_Mutation 3 148750037 A C 13 45 BRCA TCGA-A2-A0T1 HIST1H2BK SNP Missense_Mutation 6 27114334 C T 26 91 BRCA TCGA-A2-A0T1 FAM135A SNP Silent 6 71212389 G A 38 48 BRCA TCGA-A2-A0T1 DOCK4 SNP Missense_Mutation 7 111629136 T A 59 91 BRCA TCGA-A2-A0T1 SPTAN1 SNP Missense_Mutation 9 131380311 G A 39 100 BRCA TCGA-A2-A0T2 CHRNB2 SNP Missense_Mutation 1 154543819 C T 23 72 BRCA TCGA-A2-A0T2 LAMC1 DEL Frame_Shift_Del 1 183093858 GACAACATCGATC - 45 74 BRCA TCGA-A2-A0T2 EIF2C1 SNP Missense_Mutation 1 36381040 A G 14 79 BRCA TCGA-A2-A0T2 MPP7 SNP Silent 10 28378685 G A 40 45 BRCA TCGA-A2-A0T2 MUC2 SNP Missense_Mutation 11 1103818 G A 38 44 BRCA TCGA-A2-A0T2 FANCF SNP Missense_Mutation 11 22646798 T A 55 28 BRCA TCGA-A2-A0T2 SLC39A5 SNP Silent 12 56630189 A C 7 55 BRCA TCGA-A2-A0T2 PROZ SNP Missense_Mutation 13 113814455 A C 3 51 BRCA TCGA-A2-A0T2 RYR3 SNP Missense_Mutation 15 34151902 G A 40 87 BRCA TCGA-A2-A0T2 ATP2A1 SNP Missense_Mutation 16 28909621 C T 19 98 BRCA TCGA-A2-A0T2 ABCA9 SNP Splice_site 17 67017883 C G 24 86 BRCA TCGA-A2-A0T2 TP53 SNP Missense_Mutation 17 7578190 T C 49 88 BRCA TCGA-A2-A0T2 PLEKHG2 SNP Missense_Mutation 19 39908303 C T 27 67 BRCA TCGA-A2-A0T2 ZNF773 SNP Silent 19 58017763 G A 34 47 BRCA TCGA-A2-A0T2 HDLBP SNP Missense_Mutation 2 242176067 C T 23 79 BRCA TCGA-A2-A0T2 QPCT INS Frame_Shift_Ins 2 37586965 - G 63 44 BRCA TCGA-A2-A0T2 KIAA1210 SNP Missense_Mutation 23 118230488 G C 43 56 BRCA TCGA-A2-A0T2 ETV5 SNP Splice_Site 3 185823093 C T 19 79 BRCA TCGA-A2-A0T2 ABHD6 DEL Frame_Shift_Del 3 58260470 C - 30 69 BRCA TCGA-A2-A0T2 RBM47 INS Frame_Shift_Ins 4 40440780 - A 57 90 BRCA TCGA-A2-A0T2 NIPAL1 SNP Silent 4 48037625 G A 45 54 BRCA TCGA-A2-A0T2 RELL2 SNP Missense_Mutation 5 141019995 G A 41 50 BRCA TCGA-A2-A0T2 MBOAT1 SNP Silent 6 20152998 C T 29 62 BRCA TCGA-A2-A0T2 NCR2 SNP Missense_Mutation 6 41318437 C G 21 44 BRCA TCGA-A2-A0T2 WASL SNP Silent 7 123335910 T C 58 62 BRCA TCGA-A2-A0T2 PTK2B SNP Missense_Mutation 8 27315867 G A 46 94 BRCA TCGA-A2-A0T2 EYA1 SNP Missense_Mutation 8 72211886 T C 52 90 BRCA TCGA-A2-A0T2 DENND4C SNP Missense_Mutation 9 19296154 C T 29 99 BRCA TCGA-A2-A0T2 IL11RA SNP Splice_Site 9 34655600 A G 7 60 BRCA TCGA-A2-A0T3 PRRC2C SNP Nonsense_Mutation 1 171527109 C G 29 62 BRCA TCGA-A2-A0T3 CFHR4 SNP Missense_Mutation 1 196884227 C A 17 42 BRCA TCGA-A2-A0T3 SZT2 SNP Silent 1 43914050 G A 39 46 BRCA TCGA-A2-A0T3 ZFYVE9 SNP Missense_Mutation 1 52811772 C T 31 70 BRCA TCGA-A2-A0T3 ELTD1 SNP Missense_Mutation 1 79358816 A G 5 75 BRCA TCGA-A2-A0T3 OR8H2 SNP Missense_Mutation 11 55873220 G T 34 50 BRCA TCGA-A2-A0T3 PHRF1 SNP Silent 11 607853 G C 40 30 BRCA TCGA-A2-A0T3 NRXN2 SNP Missense_Mutation 11 64374729 G A 39 59 BRCA TCGA-A2-A0T3 PARPBP SNP Missense_Mutation 12 102572481 G C 34 89 BRCA TCGA-A2-A0T3 SCNN1A SNP Missense_Mutation 12 6458148 C T 27 50 BRCA TCGA-A2-A0T3 PLCD3 SNP Missense_Mutation 17 43198282 C T 31 61 BRCA TCGA-A2-A0T3 PPM1E SNP Missense_Mutation 17 57057757 C T 27 83 BRCA TCGA-A2-A0T3 TP53 DEL Frame_Shift_Del 17 7577051 TGAGGCTCCCCTTTCTTGCGGAGATTCTC - 59 54 BRCA TCGA-A2-A0T3 NETO1 SNP Silent 18 70417577 G T 38 64 BRCA TCGA-A2-A0T3 MUC16 SNP Missense_Mutation 19 9091513 G T 44 45 BRCA TCGA-A2-A0T3 SP9 SNP Missense_Mutation 2 175202011 C T 27 67 BRCA TCGA-A2-A0T3 PGAP1 SNP Silent 2 197709278 G A 34 58 BRCA TCGA-A2-A0T3 COL6A3 SNP Nonsense_Mutation 2 238290029 C A 30 85 BRCA TCGA-A2-A0T3 KLHL30 SNP Silent 2 239049602 C T 28 70 BRCA TCGA-A2-A0T3 CLIP4 SNP Silent 2 29366667 C A 29 75 BRCA TCGA-A2-A0T3 SIRPB1 SNP Missense_Mutation 20 1559200 C A 28 51 BRCA TCGA-A2-A0T3 GCFC1 SNP Silent 21 34127560 C T 23 98 BRCA TCGA-A2-A0T3 HIRA SNP Silent 22 19348811 T C 59 55 BRCA TCGA-A2-A0T3 ARMCX2 SNP Missense_Mutation 23 100911424 C T 18 67 BRCA TCGA-A2-A0T3 ODZ1 SNP Missense_Mutation 23 123615786 C A 26 74 BRCA TCGA-A2-A0T3 USP9X SNP Silent 23 41075185 T C 52 62 BRCA TCGA-A2-A0T3 FAM9B SNP Silent 23 8998340 G A 48 52 BRCA TCGA-A2-A0T3 FAM9B SNP Splice_site 23 9000382 C A 22 52 BRCA TCGA-A2-A0T3 YEATS2 SNP Missense_Mutation 3 183442226 G C 42 77 BRCA TCGA-A2-A0T3 LHFPL4 SNP Nonsense_Mutation 3 9547779 G T 45 99 BRCA TCGA-A2-A0T3 PCDHB6 SNP Silent 5 140531761 T G 63 58 BRCA TCGA-A2-A0T3 POU4F3 SNP Missense_Mutation 5 145718682 G C 42 53 BRCA TCGA-A2-A0T3 SIM1 SNP Missense_Mutation 6 100841453 C T 27 66 BRCA TCGA-A2-A0T3 DGKI SNP Missense_Mutation 7 137092668 G A 46 83 BRCA TCGA-A2-A0T3 C7orf71 INS Frame_Shift_Ins 7 26686000 - AA 33 57 BRCA TCGA-A2-A0T3 GRIN3A SNP Missense_Mutation 9 104432629 C A 25 100 BRCA TCGA-A2-A0T3 KIAA1045 SNP Missense_Mutation 9 34976648 G T 46 90 BRCA TCGA-A2-A0T3 MLANA SNP Silent 9 5892543 G A 39 45 BRCA TCGA-A2-A0T4 TDRKH SNP Silent 1 151748589 C T 24 57 BRCA TCGA-A2-A0T4 LINGO4 SNP Missense_Mutation 1 151774034 G T 43 97 BRCA TCGA-A2-A0T4 FUBP1 SNP Silent 1 78414918 A G 7 50 BRCA TCGA-A2-A0T4 CNNM1 SNP Missense_Mutation 10 101150099 C G 17 64 BRCA TCGA-A2-A0T4 AMPD3 SNP Missense_Mutation 11 10503734 C T 23 38 BRCA TCGA-A2-A0T4 MRGPRX4 SNP Missense_Mutation 11 18194859 A T 11 51 BRCA TCGA-A2-A0T4 MEN1 SNP Splice_Site 11 64574649 A C 10 84 BRCA TCGA-A2-A0T4 SF3B2 SNP Missense_Mutation 11 65825830 C T 29 82 BRCA TCGA-A2-A0T4 CPT1A SNP Missense_Mutation 11 68548116 G C 35 62 BRCA TCGA-A2-A0T4 C11orf30 SNP Silent 11 76171098 C G 32 74 BRCA TCGA-A2-A0T4 C11orf30 SNP Silent 11 76171125 C T 29 69 BRCA TCGA-A2-A0T4 ZFP36L1 DEL In_Frame_Del 14 69256739 GAT - 41 83 BRCA TCGA-A2-A0T4 PPCDC SNP Silent 15 75341501 C T 21 69 BRCA TCGA-A2-A0T4 HCFC1R1 DEL In_Frame_Del 16 3073329 CTC - 32 65 BRCA TCGA-A2-A0T4 CDH1 INS Frame_Shift_Ins 16 68862179 - T 12 76 BRCA TCGA-A2-A0T4 MFSD11 SNP Missense_Mutation 17 74735072 C G 18 97 BRCA TCGA-A2-A0T4 IL1R2 SNP Missense_Mutation 2 102626044 T A 60 55 BRCA TCGA-A2-A0T4 LRP2 SNP Missense_Mutation 2 170060647 C A 31 88 BRCA TCGA-A2-A0T4 SPEG SNP Missense_Mutation 2 220337000 G T 43 89 BRCA TCGA-A2-A0T4 NLRC4 SNP Missense_Mutation 2 32460481 A G 4 69 BRCA TCGA-A2-A0T4 CTPS2 DEL Frame_Shift_Del 23 16716365 A - 13 30 BRCA TCGA-A2-A0T4 KDM6A SNP Splice_Site 23 44896936 T G 57 82 BRCA TCGA-A2-A0T4 CXorf26 SNP Missense_Mutation 23 75392998 G A 45 58 BRCA TCGA-A2-A0T4 ZIC4 SNP Missense_Mutation 3 147114016 G A 40 71 BRCA TCGA-A2-A0T4 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A2-A0T4 CCR2 SNP Nonsense_Mutation 3 46399979 C T 23 64 BRCA TCGA-A2-A0T4 FAM193A SNP Splice_site 4 2717831 G C 35 94 BRCA TCGA-A2-A0T4 SLC25A48 SNP Missense_Mutation 5 135186164 C T 27 60 BRCA TCGA-A2-A0T4 PCDHGA12 SNP Silent 5 140812078 C A 23 38 BRCA TCGA-A2-A0T4 DOCK2 SNP Missense_Mutation 5 169135223 C T 23 32 BRCA TCGA-A2-A0T4 MCM3 SNP Missense_Mutation 6 52129411 G C 33 97 BRCA TCGA-A2-A0T4 MCM3 SNP Missense_Mutation 6 52129448 G C 33 59 BRCA TCGA-A2-A0T4 HMGCLL1 SNP Silent 6 55441924 G C 33 67 BRCA TCGA-A2-A0T4 HMGCLL1 DNP Missense_Mutation 6 55443840 GG AC 47 79 BRCA TCGA-A2-A0T4 THSD7A SNP Missense_Mutation 7 11581237 C T 27 55 BRCA TCGA-A2-A0T4 VWDE SNP Missense_Mutation 7 12373131 C T 27 60 BRCA TCGA-A2-A0T4 GPR37 SNP Missense_Mutation 7 124387024 G A 38 100 BRCA TCGA-A2-A0T4 ARL4A SNP Silent 7 12728422 A G 2 56 BRCA TCGA-A2-A0T4 HOXA9 SNP Missense_Mutation 7 27204866 G T 46 100 BRCA TCGA-A2-A0T4 ZMIZ2 SNP Missense_Mutation 7 44802938 G A 44 98 BRCA TCGA-A2-A0T4 ZNF618 SNP Nonsense_Mutation 9 116794996 C T 25 96 BRCA TCGA-A2-A0T4 IL11RA SNP Silent 9 34655292 C T 26 54 BRCA TCGA-A2-A0T6 NTNG1 SNP Silent 1 107691449 G A 40 44 BRCA TCGA-A2-A0T6 HIST2H3PS2 SNP Missense_Mutation 1 149400436 A C 6 79 BRCA TCGA-A2-A0T6 IVL SNP Silent 1 152883056 A G 10 34 BRCA TCGA-A2-A0T6 GRK5 SNP Silent 10 121196345 C T 23 47 BRCA TCGA-A2-A0T6 FAM107B SNP Silent 10 14816537 C T 20 58 BRCA TCGA-A2-A0T6 ADAMTS15 SNP Splice_Site 11 130340998 T G 59 71 BRCA TCGA-A2-A0T6 ATG13 SNP Missense_Mutation 11 46687026 A C 6 62 BRCA TCGA-A2-A0T6 METTL12 SNP Silent 11 62434166 T G 59 48 BRCA TCGA-A2-A0T6 CCDC88B SNP Missense_Mutation 11 64108900 A C 6 60 BRCA TCGA-A2-A0T6 SSSCA1 SNP Missense_Mutation 11 65339159 G A 38 63 BRCA TCGA-A2-A0T6 UNC93B1 SNP Silent 11 67770506 T G 59 43 BRCA TCGA-A2-A0T6 PDE2A SNP Missense_Mutation 11 72300262 A C 6 83 BRCA TCGA-A2-A0T6 NAB2 SNP Missense_Mutation 12 57488479 T G 59 68 BRCA TCGA-A2-A0T6 HS6ST3 SNP Missense_Mutation 13 97485222 C T 19 85 BRCA TCGA-A2-A0T6 AHNAK2 SNP Missense_Mutation 14 105421045 A C 6 46 BRCA TCGA-A2-A0T6 CDAN1 SNP Missense_Mutation 15 43029240 A C 6 83 BRCA TCGA-A2-A0T6 SMAD3 SNP Missense_Mutation 15 67479838 C T 27 100 BRCA TCGA-A2-A0T6 CSPG4 SNP Missense_Mutation 15 75982208 T G 59 56 BRCA TCGA-A2-A0T6 FURIN SNP Missense_Mutation 15 91419714 T G 59 90 BRCA TCGA-A2-A0T6 SRCAP SNP Silent 16 30736382 A C 6 84 BRCA TCGA-A2-A0T6 ABCC12 SNP Missense_Mutation 16 48155732 A C 6 61 BRCA TCGA-A2-A0T6 CDH1 INS Frame_Shift_Ins 16 68867233 - TGAT 16 90 BRCA TCGA-A2-A0T6 GAN SNP Missense_Mutation 16 81397481 C A 30 83 BRCA TCGA-A2-A0T6 SPAG5 SNP Splice_site 17 26913109 T A 54 73 BRCA TCGA-A2-A0T6 ERBB2 SNP Missense_Mutation 17 37879658 G A 39 98 BRCA TCGA-A2-A0T6 ERBB2 DNP Missense_Mutation 17 37880219 TT AG 60 78 BRCA TCGA-A2-A0T6 LOC653653 SNP Silent 17 58179880 G A 41 47 BRCA TCGA-A2-A0T6 ANGPTL6 SNP Missense_Mutation 19 10205446 T G 59 63 BRCA TCGA-A2-A0T6 TMEM205 SNP Missense_Mutation 19 11453680 A C 6 45 BRCA TCGA-A2-A0T6 PIP5K1C SNP Missense_Mutation 19 3633481 T G 59 67 BRCA TCGA-A2-A0T6 LOC400696 SNP Missense_Mutation 19 40172131 C A 17 40 BRCA TCGA-A2-A0T6 FOSB SNP Missense_Mutation 19 45973980 A C 6 74 BRCA TCGA-A2-A0T6 TPRX1 SNP Missense_Mutation 19 48305694 A G 11 29 BRCA TCGA-A2-A0T6 PRR12 SNP Missense_Mutation 19 50096688 A C 6 83 BRCA TCGA-A2-A0T6 IRF3 SNP Missense_Mutation 19 50165501 A C 6 72 BRCA TCGA-A2-A0T6 ZNF324 SNP Missense_Mutation 19 58983303 G T 40 52 BRCA TCGA-A2-A0T6 XIRP2 SNP Silent 2 168104724 C T 29 70 BRCA TCGA-A2-A0T6 ZSWIM2 SNP Missense_Mutation 2 187713647 T G 59 44 BRCA TCGA-A2-A0T6 ASAP2 SNP Missense_Mutation 2 9517076 G A 40 97 BRCA TCGA-A2-A0T6 SLC4A11 SNP Missense_Mutation 20 3214645 T G 59 89 BRCA TCGA-A2-A0T6 HS6ST2 SNP Missense_Mutation 23 131762942 T C 64 68 BRCA TCGA-A2-A0T6 SHROOM4 SNP Silent 23 50377414 A C 6 47 BRCA TCGA-A2-A0T6 PDIA5 SNP Missense_Mutation 3 122842988 A C 6 84 BRCA TCGA-A2-A0T6 MFI2 SNP Silent 3 196736580 G A 39 4 BRCA TCGA-A2-A0T6 VILL SNP Silent 3 38039036 T G 59 38 BRCA TCGA-A2-A0T6 LAMB2 SNP Silent 3 49159431 A C 6 40 BRCA TCGA-A2-A0T6 POC1A SNP Missense_Mutation 3 52183914 T G 59 57 BRCA TCGA-A2-A0T6 PLA2G12A SNP Missense_Mutation 4 110650902 A C 6 51 BRCA TCGA-A2-A0T6 ARSJ SNP Silent 4 114899946 T G 59 44 BRCA TCGA-A2-A0T6 GEMIN5 SNP Missense_Mutation 5 154317530 C T 31 69 BRCA TCGA-A2-A0T6 RAI14 SNP Missense_Mutation 5 34823772 A T 8 56 BRCA TCGA-A2-A0T6 MED23 SNP Nonsense_Mutation 6 131912472 G A 48 100 BRCA TCGA-A2-A0T6 FNDC1 SNP Missense_Mutation 6 159650900 A C 6 63 BRCA TCGA-A2-A0T6 ZSCAN12 SNP Missense_Mutation 6 28360727 C T 28 53 BRCA TCGA-A2-A0T6 TUBB2B SNP Missense_Mutation 6 3227744 A C 6 76 BRCA TCGA-A2-A0T6 FTSJD2 SNP Missense_Mutation 6 37418099 G A 37 76 BRCA TCGA-A2-A0T6 TBCC SNP Missense_Mutation 6 42713328 C A 20 57 BRCA TCGA-A2-A0T6 CPSF1 SNP Missense_Mutation 8 145621651 T G 59 72 BRCA TCGA-A2-A0T6 CPSF1 SNP Silent 8 145623023 A C 6 42 BRCA TCGA-A2-A0T6 RP1 SNP Silent 8 55534763 C T 30 54 BRCA TCGA-A2-A0T6 PPP2R4 DEL Frame_Shift_Del 9 131891338 CT - 24 53 BRCA TCGA-A2-A0T6 PPP2R4 DEL Frame_Shift_Del 9 131891344 GTTT - 44 44 BRCA TCGA-A2-A0T6 KCNT1 SNP Silent 9 138676624 C T 27 48 BRCA TCGA-A2-A0T7 RBM15 DEL Frame_Shift_Del 1 110883275 CGGCTTT - 19 53 BRCA TCGA-A2-A0T7 IARS2 SNP Silent 1 220269535 C T 19 52 BRCA TCGA-A2-A0T7 FMN2 SNP Missense_Mutation 1 240492411 G C 34 59 BRCA TCGA-A2-A0T7 GBP6 SNP Missense_Mutation 1 89844123 C A 18 39 BRCA TCGA-A2-A0T7 ANKRD2 SNP Nonsense_Mutation 10 99337563 C T 23 65 BRCA TCGA-A2-A0T7 ATM SNP Nonsense_Mutation 11 108236203 C T 23 73 BRCA TCGA-A2-A0T7 RIN1 SNP Missense_Mutation 11 66103561 G A 39 73 BRCA TCGA-A2-A0T7 LOC100288778 SNP Silent 12 88930 C T 21 48 BRCA TCGA-A2-A0T7 CEP128 INS Frame_Shift_Ins 14 81223281 - C 10 52 BRCA TCGA-A2-A0T7 LRRK1 SNP Silent 15 101565085 G A 39 31 BRCA TCGA-A2-A0T7 GOLGA6L1 SNP Missense_Mutation 15 22743097 G C 35 51 BRCA TCGA-A2-A0T7 ATPBD4 SNP Missense_Mutation 15 35814394 G A 38 80 BRCA TCGA-A2-A0T7 GLIS2 SNP Silent 16 4387381 C T 23 25 BRCA TCGA-A2-A0T7 ZNF207 SNP Missense_Mutation 17 30696435 C G 21 84 BRCA TCGA-A2-A0T7 VPS4B SNP Missense_Mutation 18 61071018 C T 19 100 BRCA TCGA-A2-A0T7 ZNF548 SNP Silent 19 57910903 G A 39 41 BRCA TCGA-A2-A0T7 CXorf65 SNP Missense_Mutation 23 70324242 A G 16 58 BRCA TCGA-A2-A0T7 PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-A2-A0T7 PIK3CA SNP Missense_Mutation 3 178952074 G A 45 100 BRCA TCGA-A2-A0T7 PTPN23 SNP Silent 3 47451454 C T 22 57 BRCA TCGA-A2-A0T7 COL7A1 SNP Missense_Mutation 3 48629346 A G 8 80 BRCA TCGA-A2-A0T7 NEK1 SNP Missense_Mutation 4 170506525 C A 27 100 BRCA TCGA-A2-A0T7 CD164 INS In_Frame_Ins 6 109703447 - GCCGAG 27 55 BRCA TCGA-A2-A0T7 SYNE1 SNP Missense_Mutation 6 152768733 T C 56 55 BRCA TCGA-A2-A0T7 KPNA7 SNP Splice_site 7 98775688 G A 38 67 BRCA TCGA-A2-A0YC MYOM3 SNP Silent 1 24409111 G A 39 37 BRCA TCGA-A2-A0YC FAAH SNP Missense_Mutation 1 46872015 T C 59 91 BRCA TCGA-A2-A0YC MACROD1 SNP Missense_Mutation 11 63767227 G A 47 75 BRCA TCGA-A2-A0YC OR4F6 SNP Missense_Mutation 15 102346617 G T 44 56 BRCA TCGA-A2-A0YC GREM1 SNP Missense_Mutation 15 33023223 G C 38 87 BRCA TCGA-A2-A0YC NCOR1 INS Frame_Shift_Ins 17 15984026 - AGGC 13 89 BRCA TCGA-A2-A0YC ZNF90 DEL Frame_Shift_Del 19 20228851 ATAAG - 8 56 BRCA TCGA-A2-A0YC CKAP2L SNP Missense_Mutation 2 113514535 G T 35 54 BRCA TCGA-A2-A0YC MYO18B SNP Missense_Mutation 22 26291174 T A 54 68 BRCA TCGA-A2-A0YC MN1 SNP Missense_Mutation 22 28195033 G A 39 92 BRCA TCGA-A2-A0YC TNRC6B SNP Missense_Mutation 22 40661511 G T 44 73 BRCA TCGA-A2-A0YC NKAP SNP Silent 23 119077497 C T 19 44 BRCA TCGA-A2-A0YC FGF13 SNP Missense_Mutation 23 137793117 G T 39 65 BRCA TCGA-A2-A0YC PPARG SNP Missense_Mutation 3 12447485 C G 24 85 BRCA TCGA-A2-A0YC PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-A2-A0YC C4orf29 SNP Missense_Mutation 4 128951784 G C 35 96 BRCA TCGA-A2-A0YC ANKRD32 SNP Missense_Mutation 5 94027917 C T 29 71 BRCA TCGA-A2-A0YC ABP1 SNP Silent 7 150554560 G T 46 50 BRCA TCGA-A2-A0YC ANGPT1 SNP Splice_site 8 108297075 C A 18 100 BRCA TCGA-A2-A0YC MATN2 SNP Missense_Mutation 8 98900392 G A 37 74 BRCA TCGA-A2-A0YD C1orf127 SNP Silent 1 11017751 C T 29 53 BRCA TCGA-A2-A0YD TXNIP SNP Silent 1 145439000 T C 56 52 BRCA TCGA-A2-A0YD CELA2B SNP Missense_Mutation 1 15808198 C T 23 44 BRCA TCGA-A2-A0YD F11R SNP Missense_Mutation 1 160970527 G C 45 55 BRCA TCGA-A2-A0YD ALDH9A1 SNP Silent 1 165667703 G A 37 43 BRCA TCGA-A2-A0YD PLXNA2 SNP Missense_Mutation 1 208255805 C T 17 99 BRCA TCGA-A2-A0YD G0S2 SNP Silent 1 209849155 G A 45 65 BRCA TCGA-A2-A0YD ITPKB SNP Missense_Mutation 1 226836376 C T 27 100 BRCA TCGA-A2-A0YD C1QB SNP Missense_Mutation 1 22987403 G A 43 98 BRCA TCGA-A2-A0YD FUBP1 SNP Missense_Mutation 1 78444657 G T 33 74 BRCA TCGA-A2-A0YD NOLC1 SNP Missense_Mutation 10 103920079 G C 33 71 BRCA TCGA-A2-A0YD MINPP1 DEL Frame_Shift_Del 10 89311854 T - 56 51 BRCA TCGA-A2-A0YD MUC5B SNP Silent 11 1254322 G A 45 51 BRCA TCGA-A2-A0YD SPTY2D1 SNP Silent 11 18636609 G A 47 51 BRCA TCGA-A2-A0YD NAV2 DEL Frame_Shift_Del 11 19967967 C - 27 57 BRCA TCGA-A2-A0YD PTDSS2 SNP Missense_Mutation 11 489482 C T 31 69 BRCA TCGA-A2-A0YD OR52N5 SNP Silent 11 5799613 G A 47 50 BRCA TCGA-A2-A0YD CD5 SNP Missense_Mutation 11 60885726 G A 47 33 BRCA TCGA-A2-A0YD TAS2R30 DEL Frame_Shift_Del 12 11286524 A - 5 63 BRCA TCGA-A2-A0YD RIMBP2 SNP Silent 12 130892283 G A 40 53 BRCA TCGA-A2-A0YD STAC3 SNP Missense_Mutation 12 57638000 G A 37 44 BRCA TCGA-A2-A0YD ERCC5 SNP Missense_Mutation 13 103514694 G A 37 62 BRCA TCGA-A2-A0YD ZDHHC20 SNP Silent 13 21955625 G A 48 56 BRCA TCGA-A2-A0YD CTSG SNP Silent 14 25044494 C T 29 51 BRCA TCGA-A2-A0YD ACTN1 SNP Silent 14 69387787 G A 40 43 BRCA TCGA-A2-A0YD CATSPER2 DEL Frame_Shift_Del 15 43925010 A - 5 51 BRCA TCGA-A2-A0YD GLCE DEL Frame_Shift_Del 15 69561032 A - 5 54 BRCA TCGA-A2-A0YD AKAP13 SNP Missense_Mutation 15 86198828 G A 45 78 BRCA TCGA-A2-A0YD PKD1 SNP Nonsense_Mutation 16 2159446 G A 45 55 BRCA TCGA-A2-A0YD PPP4C SNP Missense_Mutation 16 30094768 G C 33 71 BRCA TCGA-A2-A0YD ABCC11 SNP Missense_Mutation 16 48209200 G C 45 81 BRCA TCGA-A2-A0YD CDH1 DEL Frame_Shift_Del 16 68846043 C - 30 45 BRCA TCGA-A2-A0YD HYDIN SNP Missense_Mutation 16 70891628 T C 60 62 BRCA TCGA-A2-A0YD TRAPPC2L SNP Splice_Site 16 88926159 G A 40 97 BRCA TCGA-A2-A0YD MYH1 SNP Silent 17 10408307 A G 4 58 BRCA TCGA-A2-A0YD TMEM104 SNP Missense_Mutation 17 72786402 G A 37 87 BRCA TCGA-A2-A0YD NPC1 SNP Missense_Mutation 18 21114508 C T 19 100 BRCA TCGA-A2-A0YD OR7A5 DEL Frame_Shift_Del 19 14938475 A - 9 47 BRCA TCGA-A2-A0YD CAD SNP Missense_Mutation 2 27465222 G A 41 96 BRCA TCGA-A2-A0YD CDKL4 SNP Missense_Mutation 2 39417556 G A 45 92 BRCA TCGA-A2-A0YD ANKRD53 SNP Silent 2 71211878 G A 38 40 BRCA TCGA-A2-A0YD UBOX5 SNP Missense_Mutation 20 3096074 C T 30 83 BRCA TCGA-A2-A0YD CTNNBL1 SNP Missense_Mutation 20 36361374 C T 31 60 BRCA TCGA-A2-A0YD ZNFX1 SNP Silent 20 47882678 G A 33 70 BRCA TCGA-A2-A0YD URB1 DEL Frame_Shift_Del 21 33744886 G - 35 62 BRCA TCGA-A2-A0YD TRMT2A SNP Missense_Mutation 22 20102144 C T 30 93 BRCA TCGA-A2-A0YD GRIA3 SNP Missense_Mutation 23 122551281 C G 20 98 BRCA TCGA-A2-A0YD MAGEC3 SNP Missense_Mutation 23 140969318 C G 29 49 BRCA TCGA-A2-A0YD MXRA5 SNP Missense_Mutation 23 3242309 C T 22 56 BRCA TCGA-A2-A0YD FAM120C SNP Missense_Mutation 23 54143207 C G 32 90 BRCA TCGA-A2-A0YD CSRNP1 SNP Silent 3 39185751 G A 37 47 BRCA TCGA-A2-A0YD UBA6 DEL Frame_Shift_Del 4 68529634 T - 56 54 BRCA TCGA-A2-A0YD CYFIP2 DEL Frame_Shift_Del 5 156817668 AAGA - 13 91 BRCA TCGA-A2-A0YD MAP3K1 INS Frame_Shift_Ins 5 56178672 - A 49 49 BRCA TCGA-A2-A0YD SAMD3 DEL Frame_Shift_Del 6 130497064 T - 52 66 BRCA TCGA-A2-A0YD CALN1 SNP Silent 7 71868340 C T 28 59 BRCA TCGA-A2-A0YD DBC1 SNP Silent 9 121929944 G A 38 47 BRCA TCGA-A2-A0YD NUP214 DEL Frame_Shift_Del 9 134015982 A - 5 51 BRCA TCGA-A2-A0YD KIAA1984 SNP Missense_Mutation 9 139699835 G A 33 57 BRCA TCGA-A2-A0YD KIAA1984 SNP Missense_Mutation 9 139700996 G C 33 61 BRCA TCGA-A2-A0YD DENND4C DEL Frame_Shift_Del 9 19361904 A - 13 87 BRCA TCGA-A2-A0YD FAM205A SNP Missense_Mutation 9 34726876 C T 29 61 BRCA TCGA-A2-A0YD RORB SNP Silent 9 77300402 C T 29 59 BRCA TCGA-A2-A0YF TPR SNP Missense_Mutation 1 186304588 C G 27 96 BRCA TCGA-A2-A0YF ECHDC2 INS Frame_Shift_Ins 1 53370727 - C 38 53 BRCA TCGA-A2-A0YF SORCS1 SNP Silent 10 108427518 C T 23 27 BRCA TCGA-A2-A0YF TMEM218 SNP Silent 11 124967604 G A 41 53 BRCA TCGA-A2-A0YF BAIAP3 SNP Missense_Mutation 16 1397942 T C 56 86 BRCA TCGA-A2-A0YF RBBP6 SNP Silent 16 24567190 C T 30 52 BRCA TCGA-A2-A0YF CTCF INS Splice_Site 16 67645853 - TAC 35 100 BRCA TCGA-A2-A0YF EPX SNP Missense_Mutation 17 56271379 G A 37 55 BRCA TCGA-A2-A0YF TIMM21 DEL Frame_Shift_Del 18 71816295 TG - 55 44 BRCA TCGA-A2-A0YF ZNF627 SNP Missense_Mutation 19 11727643 G T 36 48 BRCA TCGA-A2-A0YF ZNF486 DEL Frame_Shift_Del 19 20308876 AA - 13 52 BRCA TCGA-A2-A0YF LOC100288342 SNP Missense_Mutation 2 15731877 G T 42 52 BRCA TCGA-A2-A0YF FAM117B SNP Silent 2 203630190 C A 30 54 BRCA TCGA-A2-A0YF CYP27A1 SNP Missense_Mutation 2 219647024 C T 26 50 BRCA TCGA-A2-A0YF REG1A SNP Silent 2 79350284 A G 4 45 BRCA TCGA-A2-A0YF RUNX1 INS Splice_Site 21 36171595 - A 61 66 BRCA TCGA-A2-A0YF CYTH4 SNP Missense_Mutation 22 37707034 C T 23 61 BRCA TCGA-A2-A0YF CXorf69 SNP Silent 23 134125278 C T 29 55 BRCA TCGA-A2-A0YF LOC100291814 SNP Missense_Mutation 23 511729 C T 18 36 BRCA TCGA-A2-A0YF HDAC8 SNP Missense_Mutation 23 71571588 A T 12 72 BRCA TCGA-A2-A0YF GPR160 SNP Missense_Mutation 3 169802155 T A 64 45 BRCA TCGA-A2-A0YF FAM43A INS In_Frame_Ins 3 194408411 - CGGCAGAGGGAGATC 46 51 BRCA TCGA-A2-A0YF PDE12 SNP Silent 3 57543003 T C 56 48 BRCA TCGA-A2-A0YF OR5K4 SNP Silent 3 98073612 T C 49 51 BRCA TCGA-A2-A0YF MAP3K1 DEL In_Frame_Del 5 56181812 GTT - 36 65 BRCA TCGA-A2-A0YF RIOK2 SNP Missense_Mutation 5 96506986 T C 51 87 BRCA TCGA-A2-A0YF TAB2 SNP Silent 6 149699405 T C 49 56 BRCA TCGA-A2-A0YF CYP21A2 SNP Missense_Mutation 6 32006951 C T 23 66 BRCA TCGA-A2-A0YF IMPG1 SNP Missense_Mutation 6 76640790 G A 38 62 BRCA TCGA-A2-A0YF CUX1 INS In_Frame_Ins 7 101845133 - GGCAGCGGT 35 49 BRCA TCGA-A2-A0YF CALD1 SNP Missense_Mutation 7 134645312 C A 32 90 BRCA TCGA-A2-A0YF CDK5RAP2 SNP Silent 9 123239714 T A 51 54 BRCA TCGA-A2-A0YG PTCHD2 SNP Silent 1 11591050 C T 23 39 BRCA TCGA-A2-A0YG CROCC SNP Silent 1 17274957 T C 55 24 BRCA TCGA-A2-A0YG TEX35 SNP Missense_Mutation 1 178490385 A G 2 56 BRCA TCGA-A2-A0YG ABL2 SNP Silent 1 179079445 T A 55 51 BRCA TCGA-A2-A0YG DIEXF SNP Splice_site 1 210016796 G A 44 78 BRCA TCGA-A2-A0YG CYP2C19 SNP Silent 10 96535205 G A 38 33 BRCA TCGA-A2-A0YG FBXO3 SNP Missense_Mutation 11 33795959 C T 30 75 BRCA TCGA-A2-A0YG NAALADL1 SNP Missense_Mutation 11 64820974 G A 34 70 BRCA TCGA-A2-A0YG KDM2B SNP Missense_Mutation 12 121880585 G A 39 63 BRCA TCGA-A2-A0YG VPS37B SNP Missense_Mutation 12 123355506 G C 40 54 BRCA TCGA-A2-A0YG ZNF268 DEL In_Frame_Del 12 133780735 ACT - 6 53 BRCA TCGA-A2-A0YG METTL7A SNP Silent 12 51318953 T G 55 30 BRCA TCGA-A2-A0YG MBD6 SNP Nonsense_Mutation 12 57922185 C T 23 75 BRCA TCGA-A2-A0YG ARHGEF25 SNP Missense_Mutation 12 58008164 C T 28 97 BRCA TCGA-A2-A0YG CEP290 SNP Missense_Mutation 12 88481688 G A 37 92 BRCA TCGA-A2-A0YG NALCN SNP Missense_Mutation 13 101726980 C T 19 99 BRCA TCGA-A2-A0YG GATM SNP Missense_Mutation 15 45661631 T A 62 86 BRCA TCGA-A2-A0YG TRIP4 SNP Missense_Mutation 15 64717756 G A 45 94 BRCA TCGA-A2-A0YG RPP25 SNP Missense_Mutation 15 75248395 G A 46 67 BRCA TCGA-A2-A0YG SIN3A SNP Missense_Mutation 15 75684981 T C 51 91 BRCA TCGA-A2-A0YG ZCCHC14 SNP Silent 16 87452476 A G 14 35 BRCA TCGA-A2-A0YG ZNF469 SNP Missense_Mutation 16 88505654 G A 37 69 BRCA TCGA-A2-A0YG TP53 SNP Splice_Site 17 7579311 C A 18 89 BRCA TCGA-A2-A0YG ZNF91 SNP Missense_Mutation 19 23545146 C G 17 65 BRCA TCGA-A2-A0YG ANKRD27 SNP Silent 19 33095253 G A 37 45 BRCA TCGA-A2-A0YG ZNF585A SNP Missense_Mutation 19 37643072 G A 44 88 BRCA TCGA-A2-A0YG BIRC8 SNP Missense_Mutation 19 53793146 G A 48 37 BRCA TCGA-A2-A0YG PAX8 SNP Silent 2 113994287 C T 27 32 BRCA TCGA-A2-A0YG PTH2R SNP Missense_Mutation 2 209307155 G T 42 56 BRCA TCGA-A2-A0YG SP110 SNP Missense_Mutation 2 231033848 G A 33 50 BRCA TCGA-A2-A0YG SP110 SNP Missense_Mutation 2 231077653 G T 43 71 BRCA TCGA-A2-A0YG THADA SNP Missense_Mutation 2 43805695 A C 1 82 BRCA TCGA-A2-A0YG DIDO1 SNP Missense_Mutation 20 61512792 C T 27 84 BRCA TCGA-A2-A0YG CYP2D7P1 INS Frame_Shift_Ins 22 42538514 - C 54 43 BRCA TCGA-A2-A0YG ATP2B3 SNP Missense_Mutation 23 152827663 G A 46 94 BRCA TCGA-A2-A0YG MUC4 SNP Missense_Mutation 3 195516064 C T 31 45 BRCA TCGA-A2-A0YG BMPR1B SNP Missense_Mutation 4 96035920 C T 26 75 BRCA TCGA-A2-A0YG PCDHGC5 SNP Silent 5 140871075 G A 38 30 BRCA TCGA-A2-A0YG PDE6A SNP Silent 5 149310662 G A 35 65 BRCA TCGA-A2-A0YG PPWD1 SNP Missense_Mutation 5 64865548 G A 40 100 BRCA TCGA-A2-A0YG CMYA5 SNP Silent 5 79033448 T C 52 46 BRCA TCGA-A2-A0YG VCAN SNP Splice_Site 5 82815167 G C 34 80 BRCA TCGA-A2-A0YG VCAN SNP Missense_Mutation 5 82817148 A G 12 66 BRCA TCGA-A2-A0YG DSE SNP Missense_Mutation 6 116720421 C T 20 85 BRCA TCGA-A2-A0YG TNFAIP3 SNP Missense_Mutation 6 138198386 G T 46 97 BRCA TCGA-A2-A0YG NUP153 SNP Missense_Mutation 6 17688750 C T 32 67 BRCA TCGA-A2-A0YG RELN SNP Missense_Mutation 7 103234235 A C 9 75 BRCA TCGA-A2-A0YG STRA8 SNP Missense_Mutation 7 134925368 G A 39 57 BRCA TCGA-A2-A0YG NACAD SNP Silent 7 45120522 G T 39 48 BRCA TCGA-A2-A0YG BAZ1B SNP Nonsense_Mutation 7 72892482 G A 46 97 BRCA TCGA-A2-A0YG C8orf86 SNP Missense_Mutation 8 38385938 C T 32 73 BRCA TCGA-A2-A0YG ZFHX4 SNP Missense_Mutation 8 77764150 T A 64 58 BRCA TCGA-A2-A0YG POP1 SNP Silent 8 99146755 G A 46 54 BRCA TCGA-A2-A0YG DBC1 SNP Missense_Mutation 9 121930072 G T 35 98 BRCA TCGA-A2-A0YG VCP SNP Silent 9 35057429 C T 30 61 BRCA TCGA-A2-A0YG TLE4 SNP Silent 9 82227582 C T 29 70 BRCA TCGA-A2-A0YH HNRNPCL1 SNP Missense_Mutation 1 12907682 C T 31 56 BRCA TCGA-A2-A0YH PBX1 SNP Missense_Mutation 1 164815893 C A 29 80 BRCA TCGA-A2-A0YH CR1 SNP Missense_Mutation 1 207760857 C G 32 68 BRCA TCGA-A2-A0YH RHCE SNP Silent 1 25688942 A C 6 41 BRCA TCGA-A2-A0YH ABCC2 SNP Splice_site 10 101567986 G C 35 87 BRCA TCGA-A2-A0YH PLEKHA1 SNP Missense_Mutation 10 124189401 G C 33 59 BRCA TCGA-A2-A0YH BTAF1 SNP Missense_Mutation 10 93768685 C G 32 75 BRCA TCGA-A2-A0YH SORL1 SNP Silent 11 121425982 C T 29 88 BRCA TCGA-A2-A0YH OR5T2 SNP Silent 11 56000599 A T 3 59 BRCA TCGA-A2-A0YH NR4A1 SNP Missense_Mutation 12 52451198 G A 48 94 BRCA TCGA-A2-A0YH GNB3 SNP Missense_Mutation 12 6952186 C T 19 100 BRCA TCGA-A2-A0YH SLITRK5 SNP Missense_Mutation 13 88329051 G C 37 95 BRCA TCGA-A2-A0YH PSMA3 SNP Missense_Mutation 14 58724656 G C 33 93 BRCA TCGA-A2-A0YH TJP1 SNP Silent 15 30001020 T C 51 37 BRCA TCGA-A2-A0YH ATXN2L SNP Silent 16 28844517 G A 33 72 BRCA TCGA-A2-A0YH TRPV2 SNP Silent 17 16335539 C G 29 54 BRCA TCGA-A2-A0YH SUZ12 SNP Missense_Mutation 17 30315462 G A 33 98 BRCA TCGA-A2-A0YH TP53 SNP Missense_Mutation 17 7577105 G A 35 82 BRCA TCGA-A2-A0YH ZNF532 DEL Frame_Shift_Del 18 56587811 G - 35 60 BRCA TCGA-A2-A0YH DOT1L SNP Splice_Site 19 2211749 G T 33 93 BRCA TCGA-A2-A0YH PSG1 SNP Silent 19 43376163 G A 36 51 BRCA TCGA-A2-A0YH SCN9A DEL Frame_Shift_Del 2 167149874 G - 47 100 BRCA TCGA-A2-A0YH TTN SNP Missense_Mutation 2 179445267 C T 32 100 BRCA TCGA-A2-A0YH C2orf62 SNP Missense_Mutation 2 219232206 G A 41 78 BRCA TCGA-A2-A0YH MTA3 SNP Silent 2 42871362 C T 17 60 BRCA TCGA-A2-A0YH FSHR SNP Nonsense_Mutation 2 49295407 G A 37 74 BRCA TCGA-A2-A0YH GPR75 SNP Silent 2 54081234 G C 33 49 BRCA TCGA-A2-A0YH PYGB DEL Frame_Shift_Del 20 25257355 G - 47 93 BRCA TCGA-A2-A0YH CDC25B SNP Missense_Mutation 20 3783790 C G 31 49 BRCA TCGA-A2-A0YH LPIN3 SNP Missense_Mutation 20 39974484 C T 19 84 BRCA TCGA-A2-A0YH USP25 SNP Missense_Mutation 21 17177479 C G 32 83 BRCA TCGA-A2-A0YH CLTCL1 SNP Missense_Mutation 22 19220950 C A 32 73 BRCA TCGA-A2-A0YH RTN4R SNP Missense_Mutation 22 20230142 C T 29 78 BRCA TCGA-A2-A0YH TBC1D8B SNP Missense_Mutation 23 106066621 C T 26 93 BRCA TCGA-A2-A0YH FLNA DEL Frame_Shift_Del 23 153580297 G - 39 74 BRCA TCGA-A2-A0YH VAMP7 SNP Silent 23 155130211 C T 22 53 BRCA TCGA-A2-A0YH PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA TCGA-A2-A0YH POLR2H SNP Missense_Mutation 3 184082777 G A 45 84 BRCA TCGA-A2-A0YH PTPRG SNP Missense_Mutation 3 61975361 C G 30 98 BRCA TCGA-A2-A0YH PDZRN3 SNP Missense_Mutation 3 73453303 C T 32 100 BRCA TCGA-A2-A0YH NFKB1 SNP Missense_Mutation 4 103522129 C T 32 64 BRCA TCGA-A2-A0YH C4orf21 SNP Nonsense_Mutation 4 113468473 C A 30 87 BRCA TCGA-A2-A0YH CCNA2 SNP Missense_Mutation 4 122743651 G A 38 43 BRCA TCGA-A2-A0YH RXFP1 SNP Missense_Mutation 4 159547979 G A 45 79 BRCA TCGA-A2-A0YH STAP1 SNP Missense_Mutation 4 68459065 G A 45 55 BRCA TCGA-A2-A0YH WDFY3 SNP Silent 4 85617213 C T 24 100 BRCA TCGA-A2-A0YH PCDHGC3 SNP Missense_Mutation 5 140855927 G A 41 72 BRCA TCGA-A2-A0YH SYNE1 SNP Missense_Mutation 6 152563452 G T 45 54 BRCA TCGA-A2-A0YH TMEM242 SNP Splice_site 6 157713934 C G 29 67 BRCA TCGA-A2-A0YH SENP6 SNP Missense_Mutation 6 76385620 C G 32 68 BRCA TCGA-A2-A0YH ZCWPW1 SNP Splice_Site 7 100014811 C T 21 70 BRCA TCGA-A2-A0YH SEPT14 SNP Missense_Mutation 7 55910784 C G 29 89 BRCA TCGA-A2-A0YH COX19 SNP Missense_Mutation 7 966263 C T 30 50 BRCA TCGA-A2-A0YH MTSS1 SNP Missense_Mutation 8 125575147 G C 41 78 BRCA TCGA-A2-A0YH STAU2 SNP Missense_Mutation 8 74526082 C T 27 79 BRCA TCGA-A2-A0YH ZFHX4 SNP Missense_Mutation 8 77616868 C T 32 85 BRCA TCGA-A2-A0YH ZFHX4 SNP Missense_Mutation 8 77776717 T A 49 74 BRCA TCGA-A2-A0YH FAM75A2 SNP Nonsense_Mutation 9 39887042 C A 31 37 BRCA TCGA-A2-A0YH KDM4C SNP Silent 9 6887970 A T 5 45 BRCA TCGA-A2-A0YI SPEN DEL Frame_Shift_Del 1 16258660 CA - 29 51 BRCA TCGA-A2-A0YI CCDC34 DEL In_Frame_Del 11 27384449 TCATCCACGTCTTCCTCA - 62 47 BRCA TCGA-A2-A0YI CLIP1 SNP Missense_Mutation 12 122826098 C G 32 60 BRCA TCGA-A2-A0YI MAP2K5 SNP Splice_Site 15 67873162 G C 44 99 BRCA TCGA-A2-A0YI MEFV SNP Silent 16 3306365 G T 38 52 BRCA TCGA-A2-A0YI SIPA1L3 SNP Missense_Mutation 19 38655323 C T 30 50 BRCA TCGA-A2-A0YI SCN9A SNP Silent 2 167099093 C T 30 51 BRCA TCGA-A2-A0YI ZNFX1 SNP Missense_Mutation 20 47881273 G T 35 95 BRCA TCGA-A2-A0YI TRPC5 SNP Missense_Mutation 23 111155993 G T 48 64 BRCA TCGA-A2-A0YI PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA TCGA-A2-A0YI RASGEF1C SNP Missense_Mutation 5 179564989 C T 31 52 BRCA TCGA-A2-A0YI THSD7A SNP Silent 7 11509516 C T 19 27 BRCA TCGA-A2-A0YI CDK5RAP2 SNP Missense_Mutation 9 123210362 G A 39 54 BRCA TCGA-A2-A0YJ CELSR2 SNP Missense_Mutation 1 109794101 C T 18 56 BRCA TCGA-A2-A0YJ TCHHL1 SNP Missense_Mutation 1 152058008 T A 55 68 BRCA TCGA-A2-A0YJ NDUFS2 SNP Missense_Mutation 1 161183954 G A 33 88 BRCA TCGA-A2-A0YJ ARHGEF10L SNP Missense_Mutation 1 17958870 G T 40 94 BRCA TCGA-A2-A0YJ DNAH14 SNP Silent 1 225266935 G A 47 52 BRCA TCGA-A2-A0YJ PTCHD3 SNP Missense_Mutation 10 27687828 A C 7 70 BRCA TCGA-A2-A0YJ RRP12 SNP Missense_Mutation 10 99133604 C T 31 72 BRCA TCGA-A2-A0YJ MMP13 SNP Silent 11 102824991 T A 51 50 BRCA TCGA-A2-A0YJ DSCAML1 SNP Missense_Mutation 11 117376409 A G 11 77 BRCA TCGA-A2-A0YJ MLL SNP Missense_Mutation 11 118375750 A C 3 90 BRCA TCGA-A2-A0YJ RPUSD4 SNP Silent 11 126073535 G C 43 48 BRCA TCGA-A2-A0YJ OR52N2 SNP Missense_Mutation 11 5842404 C G 26 63 BRCA TCGA-A2-A0YJ FLRT1 SNP Silent 11 63884894 C T 27 39 BRCA TCGA-A2-A0YJ NARS2 SNP Missense_Mutation 11 78154716 C T 27 55 BRCA TCGA-A2-A0YJ UHRF1BP1L SNP Missense_Mutation 12 100451829 G C 36 59 BRCA TCGA-A2-A0YJ TCTN2 SNP Missense_Mutation 12 124191572 G A 45 88 BRCA TCGA-A2-A0YJ LRRK2 SNP Silent 12 40745469 C T 28 51 BRCA TCGA-A2-A0YJ FAM155A SNP Missense_Mutation 13 108518036 G T 36 56 BRCA TCGA-A2-A0YJ DYNC1H1 SNP Missense_Mutation 14 102514950 A G 9 78 BRCA TCGA-A2-A0YJ HEATR5A SNP Splice_site 14 31763097 G A 37 96 BRCA TCGA-A2-A0YJ HSPA2 SNP Missense_Mutation 14 65007620 G A 46 100 BRCA TCGA-A2-A0YJ VASH1 SNP Splice_site 14 77244414 G T 39 94 BRCA TCGA-A2-A0YJ IVD SNP Missense_Mutation 15 40698066 C T 27 47 BRCA TCGA-A2-A0YJ SNX33 SNP Missense_Mutation 15 75949390 G A 46 95 BRCA TCGA-A2-A0YJ UNC119 SNP Missense_Mutation 17 26875691 T C 63 70 BRCA TCGA-A2-A0YJ SUZ12 SNP Missense_Mutation 17 30267315 G C 33 80 BRCA TCGA-A2-A0YJ SHPK SNP Silent 17 3524661 G A 39 29 BRCA TCGA-A2-A0YJ TP53 SNP Nonsense_Mutation 17 7574003 G A 39 57 BRCA TCGA-A2-A0YJ ARHGEF15 SNP Missense_Mutation 17 8219162 T A 62 71 BRCA TCGA-A2-A0YJ APCDD1 SNP Missense_Mutation 18 10471922 G A 39 96 BRCA TCGA-A2-A0YJ NAPG SNP Missense_Mutation 18 10530817 C G 32 97 BRCA TCGA-A2-A0YJ LOXHD1 SNP Missense_Mutation 18 44140430 C T 19 70 BRCA TCGA-A2-A0YJ SNP Silent 18 44774949 G A 40 51 BRCA TCGA-A2-A0YJ FAM69C SNP Missense_Mutation 18 72109212 G A 38 96 BRCA TCGA-A2-A0YJ CLEC17A SNP Silent 19 14705309 C T 22 27 BRCA TCGA-A2-A0YJ ZNF430 SNP Nonsense_Mutation 19 21240799 C A 29 68 BRCA TCGA-A2-A0YJ USF2 SNP Missense_Mutation 19 35769686 G T 33 65 BRCA TCGA-A2-A0YJ FCGBP SNP Silent 19 40408807 G A 40 38 BRCA TCGA-A2-A0YJ ZNF524 SNP Silent 19 56113589 G C 43 50 BRCA TCGA-A2-A0YJ NLRP5 SNP Silent 19 56569642 G A 35 58 BRCA TCGA-A2-A0YJ FBN3 SNP Missense_Mutation 19 8174244 C G 32 47 BRCA TCGA-A2-A0YJ GPR17 SNP Missense_Mutation 2 128408742 C T 26 70 BRCA TCGA-A2-A0YJ DHRS9 SNP Silent 2 169939876 C T 27 20 BRCA TCGA-A2-A0YJ CCDC141 SNP Missense_Mutation 2 179702153 C G 17 64 BRCA TCGA-A2-A0YJ RDH14 SNP Missense_Mutation 2 18736890 T C 64 77 BRCA TCGA-A2-A0YJ DLGAP4 SNP Missense_Mutation 20 35128703 C T 23 78 BRCA TCGA-A2-A0YJ RAE1 SNP Missense_Mutation 20 55949798 T A 63 93 BRCA TCGA-A2-A0YJ LAMA5 SNP Missense_Mutation 20 60885879 C G 19 47 BRCA TCGA-A2-A0YJ ADAMTS5 SNP Silent 21 28302261 T C 49 31 BRCA TCGA-A2-A0YJ KRTAP10-1 SNP Missense_Mutation 21 45959988 A T 11 52 BRCA TCGA-A2-A0YJ MYO18B SNP Missense_Mutation 22 26164317 A G 3 41 BRCA TCGA-A2-A0YJ EIF4ENIF1 SNP Missense_Mutation 22 31836773 G C 35 77 BRCA TCGA-A2-A0YJ SFI1 SNP Silent 22 31942922 G A 36 53 BRCA TCGA-A2-A0YJ COL6A6 SNP Missense_Mutation 3 130327755 G C 35 76 BRCA TCGA-A2-A0YJ MECOM SNP Missense_Mutation 3 168833597 G T 34 84 BRCA TCGA-A2-A0YJ CCR2 SNP Missense_Mutation 3 46399864 A T 2 43 BRCA TCGA-A2-A0YJ BSN SNP Silent 3 49691942 G A 40 18 BRCA TCGA-A2-A0YJ HYAL2 SNP Missense_Mutation 3 50357070 G C 42 59 BRCA TCGA-A2-A0YJ ERC2 SNP Missense_Mutation 3 56468977 C T 19 100 BRCA TCGA-A2-A0YJ SNX25 SNP Missense_Mutation 4 186180136 G A 40 66 BRCA TCGA-A2-A0YJ SORCS2 SNP Silent 4 7725534 C T 23 26 BRCA TCGA-A2-A0YJ PARP8 SNP Silent 5 50091197 C A 24 89 BRCA TCGA-A2-A0YJ HEXB SNP Missense_Mutation 5 73981270 T C 63 60 BRCA TCGA-A2-A0YJ ARMC2 SNP Missense_Mutation 6 109190160 G A 39 67 BRCA TCGA-A2-A0YJ FAM184A SNP Missense_Mutation 6 119301436 G C 40 85 BRCA TCGA-A2-A0YJ HIST1H2AD SNP Missense_Mutation 6 26199312 C A 26 97 BRCA TCGA-A2-A0YJ SNAP91 SNP Missense_Mutation 6 84366485 T C 49 91 BRCA TCGA-A2-A0YJ ABCF2 INS Frame_Shift_Ins 7 150916218 - C 38 78 BRCA TCGA-A2-A0YJ MLL3 DEL In_Frame_Del 7 151873388 TTC - 60 50 BRCA TCGA-A2-A0YJ RBM33 SNP Missense_Mutation 7 155537935 G T 33 84 BRCA TCGA-A2-A0YJ AGMO SNP Splice_Site 7 15584395 A G 14 76 BRCA TCGA-A2-A0YJ MAD1L1 SNP Missense_Mutation 7 1997278 G A 38 50 BRCA TCGA-A2-A0YJ ZNF727 SNP Missense_Mutation 7 63537782 C A 19 40 BRCA TCGA-A2-A0YJ ERV3-1 SNP Missense_Mutation 7 64452362 C G 27 52 BRCA TCGA-A2-A0YJ MAGI2 SNP Missense_Mutation 7 77762343 C G 32 75 BRCA TCGA-A2-A0YJ PPP1R9A SNP Missense_Mutation 7 94750069 C T 25 99 BRCA TCGA-A2-A0YJ ZSCAN21 SNP Missense_Mutation 7 99654891 C G 20 69 BRCA TCGA-A2-A0YJ TAF1L SNP Nonsense_Mutation 9 32634818 G A 37 58 BRCA TCGA-A2-A0YJ UBQLN1 DEL Frame_Shift_Del 9 86292621 CCTGAGTTGTTAAAAGCATACCTCCTACT - 26 39 BRCA TCGA-A2-A0YK COL11A1 SNP Missense_Mutation 1 103412488 C T 28 100 BRCA TCGA-A2-A0YK NTNG1 SNP Missense_Mutation 1 107961246 G C 45 91 BRCA TCGA-A2-A0YK WDR47 SNP Missense_Mutation 1 109554133 C A 29 97 BRCA TCGA-A2-A0YK GNAT2 SNP Silent 1 110148667 G A 37 53 BRCA TCGA-A2-A0YK WARS2 SNP Nonsense_Mutation 1 119683237 C A 29 61 BRCA TCGA-A2-A0YK SNX27 SNP Missense_Mutation 1 151641007 G T 34 93 BRCA TCGA-A2-A0YK SHE SNP Silent 1 154471712 G A 45 52 BRCA TCGA-A2-A0YK SCAMP3 SNP Silent 1 155231934 C T 32 52 BRCA TCGA-A2-A0YK RIT1 SNP Silent 1 155880559 C T 32 55 BRCA TCGA-A2-A0YK IQGAP3 SNP Missense_Mutation 1 156500030 G A 45 81 BRCA TCGA-A2-A0YK SLC25A34 SNP Silent 1 16063212 C T 32 58 BRCA TCGA-A2-A0YK RCSD1 SNP Missense_Mutation 1 167663386 G C 33 53 BRCA TCGA-A2-A0YK ZNF648 SNP Silent 1 182025757 G A 37 44 BRCA TCGA-A2-A0YK C1orf222 SNP Missense_Mutation 1 1855219 C G 29 57 BRCA TCGA-A2-A0YK PTPN7 SNP Missense_Mutation 1 202121761 C T 32 75 BRCA TCGA-A2-A0YK SYT2 SNP Missense_Mutation 1 202568369 C G 29 86 BRCA TCGA-A2-A0YK PROX1 SNP Missense_Mutation 1 214170738 G C 35 77 BRCA TCGA-A2-A0YK USH2A SNP Missense_Mutation 1 216390820 G C 33 56 BRCA TCGA-A2-A0YK SPRTN SNP Silent 1 231483548 C G 30 49 BRCA TCGA-A2-A0YK ASAP3 SNP Silent 1 23768756 G C 45 48 BRCA TCGA-A2-A0YK SMYD3 SNP Silent 1 246078940 G A 45 53 BRCA TCGA-A2-A0YK SMYD3 SNP Missense_Mutation 1 246670372 C T 31 64 BRCA TCGA-A2-A0YK PPP1R8 SNP Missense_Mutation 1 28169711 C G 29 69 BRCA TCGA-A2-A0YK PUM1 SNP Splice_site 1 31406059 C G 29 71 BRCA TCGA-A2-A0YK ZCCHC17 SNP Nonsense_Mutation 1 31811816 A T 15 81 BRCA TCGA-A2-A0YK HCRTR1 SNP Missense_Mutation 1 32092459 C G 32 52 BRCA TCGA-A2-A0YK MAST2 SNP Missense_Mutation 1 46496719 G C 33 98 BRCA TCGA-A2-A0YK C1orf177 SNP Missense_Mutation 1 55277548 C G 29 76 BRCA TCGA-A2-A0YK RAVER2 SNP Silent 1 65255161 C T 32 56 BRCA TCGA-A2-A0YK RPAP2 SNP Silent 1 92789578 T G 61 57 BRCA TCGA-A2-A0YK FNBP1L SNP Missense_Mutation 1 93989865 G C 41 75 BRCA TCGA-A2-A0YK ARHGAP29 SNP Nonsense_Mutation 1 94650459 G C 45 93 BRCA TCGA-A2-A0YK ECHDC3 SNP Silent 10 11789450 G C 45 51 BRCA TCGA-A2-A0YK DCLRE1C SNP Missense_Mutation 10 14951176 C G 32 49 BRCA TCGA-A2-A0YK BMI1 SNP Missense_Mutation 10 22616543 G C 33 96 BRCA TCGA-A2-A0YK ANKRD26 SNP Missense_Mutation 10 27342293 C G 32 50 BRCA TCGA-A2-A0YK ZNF438 SNP Missense_Mutation 10 31134453 C T 31 69 BRCA TCGA-A2-A0YK VSTM4 SNP Missense_Mutation 10 50294048 C G 29 75 BRCA TCGA-A2-A0YK AKR1C2 SNP Missense_Mutation 10 5038048 G C 45 83 BRCA TCGA-A2-A0YK AIFM2 SNP Missense_Mutation 10 71874694 G C 33 72 BRCA TCGA-A2-A0YK PPA1 SNP Missense_Mutation 10 71969403 C T 32 98 BRCA TCGA-A2-A0YK DLG5 SNP Missense_Mutation 10 79589260 C T 31 84 BRCA TCGA-A2-A0YK PAPSS2 SNP Silent 10 89474611 G A 46 56 BRCA TCGA-A2-A0YK HECTD2 SNP Silent 10 93185103 G A 37 63 BRCA TCGA-A2-A0YK ATM SNP Silent 11 108200998 G A 45 74 BRCA TCGA-A2-A0YK ATM SNP Missense_Mutation 11 108206578 G A 45 100 BRCA TCGA-A2-A0YK SIDT2 SNP Silent 11 117052583 G A 33 59 BRCA TCGA-A2-A0YK FEZ1 SNP Missense_Mutation 11 125351488 G A 45 67 BRCA TCGA-A2-A0YK PLEKHA7 SNP Silent 11 16810673 G A 45 79 BRCA TCGA-A2-A0YK SLC17A6 SNP Missense_Mutation 11 22397575 A G 14 81 BRCA TCGA-A2-A0YK OSBPL5 SNP Missense_Mutation 11 3129034 G A 45 60 BRCA TCGA-A2-A0YK CKAP5 SNP Missense_Mutation 11 46786748 G C 41 82 BRCA TCGA-A2-A0YK MADD SNP Silent 11 47300612 G T 45 76 BRCA TCGA-A2-A0YK OR8H1 SNP Silent 11 56058164 G A 33 54 BRCA TCGA-A2-A0YK CPSF7 SNP Missense_Mutation 11 61187439 C T 29 80 BRCA TCGA-A2-A0YK AHNAK SNP Missense_Mutation 11 62297871 C G 32 71 BRCA TCGA-A2-A0YK AHNAK SNP Missense_Mutation 11 62297991 C T 29 71 BRCA TCGA-A2-A0YK SF1 SNP Missense_Mutation 11 64534715 G A 35 76 BRCA TCGA-A2-A0YK KCNK7 SNP Missense_Mutation 11 65360593 G C 45 56 BRCA TCGA-A2-A0YK LRFN4 SNP Missense_Mutation 11 66627266 C T 31 53 BRCA TCGA-A2-A0YK PITPNM1 SNP Missense_Mutation 11 67265000 G C 45 60 BRCA TCGA-A2-A0YK C11orf30 SNP Missense_Mutation 11 76255449 G C 33 56 BRCA TCGA-A2-A0YK ST5 SNP Silent 11 8728716 G A 45 74 BRCA TCGA-A2-A0YK KIAA1731 SNP Missense_Mutation 11 93457518 C T 30 65 BRCA TCGA-A2-A0YK FAM76B SNP Missense_Mutation 11 95521679 C T 32 96 BRCA TCGA-A2-A0YK KDM2B SNP Silent 12 121986850 C T 28 65 BRCA TCGA-A2-A0YK CCDC65 SNP Silent 12 49298848 C T 29 68 BRCA TCGA-A2-A0YK ESPL1 SNP Missense_Mutation 12 53666536 C A 32 72 BRCA TCGA-A2-A0YK OR9K2 SNP Missense_Mutation 12 55524054 C G 29 61 BRCA TCGA-A2-A0YK LRRC23 SNP Missense_Mutation 12 7019087 G C 41 80 BRCA TCGA-A2-A0YK ZDHHC17 SNP Missense_Mutation 12 77243248 C G 29 88 BRCA TCGA-A2-A0YK PPP1R12A SNP Missense_Mutation 12 80190988 C T 32 93 BRCA TCGA-A2-A0YK C12orf55 SNP Missense_Mutation 12 97093812 T C 53 44 BRCA TCGA-A2-A0YK CCDC168 SNP Missense_Mutation 13 103385158 C G 32 49 BRCA TCGA-A2-A0YK LOC643677 SNP Silent 13 103391188 G A 45 48 BRCA TCGA-A2-A0YK LOC643677 SNP Missense_Mutation 13 103392328 C G 30 48 BRCA TCGA-A2-A0YK ARHGEF7 SNP Nonsense_Mutation 13 111930018 C T 29 99 BRCA TCGA-A2-A0YK IPO5 SNP Missense_Mutation 13 98660331 G C 33 96 BRCA TCGA-A2-A0YK MYH6 SNP Missense_Mutation 14 23855274 C T 19 82 BRCA TCGA-A2-A0YK IRF9 SNP Missense_Mutation 14 24631447 G A 45 73 BRCA TCGA-A2-A0YK REC8 SNP Missense_Mutation 14 24642177 C G 32 75 BRCA TCGA-A2-A0YK NEDD8 SNP Missense_Mutation 14 24687410 G C 45 52 BRCA TCGA-A2-A0YK C14orf37 SNP Missense_Mutation 14 58604848 G A 41 57 BRCA TCGA-A2-A0YK FAM161B SNP Missense_Mutation 14 74409190 C G 32 61 BRCA TCGA-A2-A0YK POMT2 SNP Splice_Site 14 77751976 C G 32 100 BRCA TCGA-A2-A0YK TSHR SNP Missense_Mutation 14 81606069 G A 41 78 BRCA TCGA-A2-A0YK RYR3 SNP Silent 15 33927951 G A 37 56 BRCA TCGA-A2-A0YK TGM5 SNP Missense_Mutation 15 43525482 C A 32 71 BRCA TCGA-A2-A0YK UNC13C SNP Silent 15 54305910 C G 29 50 BRCA TCGA-A2-A0YK CYP11A1 SNP Silent 15 74631005 G A 45 52 BRCA TCGA-A2-A0YK CORO7 SNP Missense_Mutation 16 4415517 G T 33 81 BRCA TCGA-A2-A0YK GPR114 SNP Silent 16 57601828 G A 45 56 BRCA TCGA-A2-A0YK CDH1 SNP Nonsense_Mutation 16 68835596 C T 31 67 BRCA TCGA-A2-A0YK NFAT5 SNP Missense_Mutation 16 69726330 G C 33 87 BRCA TCGA-A2-A0YK ZNF469 SNP Silent 16 88497199 G A 43 50 BRCA TCGA-A2-A0YK ANKRD11 SNP Silent 16 89351969 G A 45 45 BRCA TCGA-A2-A0YK SMCR7 SNP Silent 17 18167940 C T 31 46 BRCA TCGA-A2-A0YK NF1 SNP Missense_Mutation 17 29546065 G C 33 96 BRCA TCGA-A2-A0YK SLFN5 SNP Missense_Mutation 17 33592664 G A 45 50 BRCA TCGA-A2-A0YK AP2B1 SNP Silent 17 33984663 C T 18 61 BRCA TCGA-A2-A0YK KIF2B SNP Silent 17 51902101 C T 31 42 BRCA TCGA-A2-A0YK C17orf77 SNP Missense_Mutation 17 72588661 G A 41 60 BRCA TCGA-A2-A0YK GREB1L SNP Missense_Mutation 18 19029545 G A 33 86 BRCA TCGA-A2-A0YK ASXL3 SNP Missense_Mutation 18 31226305 G A 33 84 BRCA TCGA-A2-A0YK CPLX4 SNP Missense_Mutation 18 56985530 C G 32 57 BRCA TCGA-A2-A0YK CDH19 SNP Missense_Mutation 18 64221726 C T 29 95 BRCA TCGA-A2-A0YK GALR1 SNP Silent 18 74962762 C G 32 67 BRCA TCGA-A2-A0YK CDC37 SNP Missense_Mutation 19 10505773 T G 63 81 BRCA TCGA-A2-A0YK SLC1A6 SNP Nonsense_Mutation 19 15082654 G T 45 58 BRCA TCGA-A2-A0YK UNC13A SNP Silent 19 17780393 G A 41 52 BRCA TCGA-A2-A0YK CEP89 SNP Missense_Mutation 19 33422303 G A 45 33 BRCA TCGA-A2-A0YK GGN SNP Silent 19 38876804 G A 45 57 BRCA TCGA-A2-A0YK DHX34 SNP Missense_Mutation 19 47879199 C T 31 83 BRCA TCGA-A2-A0YK NLRP12 SNP Silent 19 54313212 C T 29 44 BRCA TCGA-A2-A0YK LRRC8E SNP Silent 19 7964304 C T 32 65 BRCA TCGA-A2-A0YK MUC16 SNP Silent 19 9091122 C G 30 48 BRCA TCGA-A2-A0YK MBD5 SNP Missense_Mutation 2 149226685 G C 45 100 BRCA TCGA-A2-A0YK GORASP2 SNP Missense_Mutation 2 171807955 G A 43 100 BRCA TCGA-A2-A0YK TTN SNP Missense_Mutation 2 179592543 C G 29 75 BRCA TCGA-A2-A0YK MFF SNP Missense_Mutation 2 228211994 G A 45 93 BRCA TCGA-A2-A0YK ECEL1 SNP Missense_Mutation 2 233347817 C G 29 100 BRCA TCGA-A2-A0YK PER2 SNP Missense_Mutation 2 239181776 C G 32 73 BRCA TCGA-A2-A0YK PRKD3 SNP Missense_Mutation 2 37516501 C G 32 94 BRCA TCGA-A2-A0YK DYNC2LI1 SNP Nonsense_Mutation 2 44032338 C T 29 84 BRCA TCGA-A2-A0YK ATRN SNP Missense_Mutation 20 3540081 C T 32 79 BRCA TCGA-A2-A0YK R3HDML SNP Silent 20 42972038 C T 29 29 BRCA TCGA-A2-A0YK HRH3 SNP Missense_Mutation 20 60791847 C T 31 60 BRCA TCGA-A2-A0YK YTHDF1 SNP Nonsense_Mutation 20 61835143 G C 45 85 BRCA TCGA-A2-A0YK PLCB4 SNP Missense_Mutation 20 9370583 C G 32 85 BRCA TCGA-A2-A0YK CCT8 SNP Missense_Mutation 21 30434457 G C 33 83 BRCA TCGA-A2-A0YK GRIK1 SNP Missense_Mutation 21 30925922 C T 31 72 BRCA TCGA-A2-A0YK HUNK SNP Missense_Mutation 21 33371214 C G 32 81 BRCA TCGA-A2-A0YK ETS2 SNP Missense_Mutation 21 40194639 G C 45 100 BRCA TCGA-A2-A0YK TSPEAR SNP Missense_Mutation 21 45929254 C T 32 96 BRCA TCGA-A2-A0YK HIRA SNP Missense_Mutation 22 19344476 G C 33 97 BRCA TCGA-A2-A0YK SUSD2 SNP Missense_Mutation 22 24583679 G C 33 60 BRCA TCGA-A2-A0YK TRIOBP SNP Silent 22 38131375 C T 32 44 BRCA TCGA-A2-A0YK TTLL1 SNP Missense_Mutation 22 43464475 G C 33 65 BRCA TCGA-A2-A0YK MID2 SNP Nonsense_Mutation 23 107169922 C G 17 57 BRCA TCGA-A2-A0YK MSL3 SNP Missense_Mutation 23 11778559 G A 45 87 BRCA TCGA-A2-A0YK CUL4B SNP Missense_Mutation 23 119678470 G A 45 79 BRCA TCGA-A2-A0YK CXorf58 SNP Missense_Mutation 23 23934361 C A 29 51 BRCA TCGA-A2-A0YK RPGR SNP Missense_Mutation 23 38146055 C T 30 50 BRCA TCGA-A2-A0YK DDX3X SNP Silent 23 41204737 G A 33 59 BRCA TCGA-A2-A0YK KDM5C SNP Silent 23 53225894 C T 32 70 BRCA TCGA-A2-A0YK HDAC8 SNP Missense_Mutation 23 71715093 G C 33 75 BRCA TCGA-A2-A0YK ARHGAP31 SNP Silent 3 119101244 C T 29 60 BRCA TCGA-A2-A0YK C3orf20 SNP Silent 3 14725873 C T 27 28 BRCA TCGA-A2-A0YK CPA3 SNP Silent 3 148603939 C A 32 58 BRCA TCGA-A2-A0YK FGD5 SNP Silent 3 14963443 C T 19 50 BRCA TCGA-A2-A0YK PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA TCGA-A2-A0YK LRRFIP2 SNP Missense_Mutation 3 37146954 C G 30 93 BRCA TCGA-A2-A0YK ZNF662 SNP Missense_Mutation 3 42956022 G A 45 58 BRCA TCGA-A2-A0YK SNRK SNP Missense_Mutation 3 43384891 G C 45 100 BRCA TCGA-A2-A0YK KIAA1143 SNP Missense_Mutation 3 44795848 G T 45 74 BRCA TCGA-A2-A0YK QRICH1 SNP Missense_Mutation 3 49083950 C T 21 100 BRCA TCGA-A2-A0YK CACNA2D2 SNP Missense_Mutation 3 50413289 C A 26 93 BRCA TCGA-A2-A0YK INTU SNP Missense_Mutation 4 128626754 G C 45 62 BRCA TCGA-A2-A0YK HAUS3 SNP Splice_site 4 2233655 C G 29 63 BRCA TCGA-A2-A0YK RGS12 SNP Missense_Mutation 4 3344728 C T 29 74 BRCA TCGA-A2-A0YK G3BP2 SNP Missense_Mutation 4 76570799 C A 29 95 BRCA TCGA-A2-A0YK PAQR3 SNP Missense_Mutation 4 79856355 C G 29 76 BRCA TCGA-A2-A0YK TMED7-TICAM2 SNP Missense_Mutation 5 114952043 C T 32 87 BRCA TCGA-A2-A0YK UBE2D2 SNP Missense_Mutation 5 138994175 C G 30 71 BRCA TCGA-A2-A0YK PCDHB14 SNP Missense_Mutation 5 140604293 G C 45 59 BRCA TCGA-A2-A0YK PCDHGA10 SNP Missense_Mutation 5 140793682 G A 45 100 BRCA TCGA-A2-A0YK G3BP1 SNP Missense_Mutation 5 151179471 G A 45 95 BRCA TCGA-A2-A0YK CDH10 SNP Missense_Mutation 5 24511615 G A 45 92 BRCA TCGA-A2-A0YK MAP3K1 SNP Nonsense_Mutation 5 56178257 C G 29 63 BRCA TCGA-A2-A0YK CCDC125 SNP Nonsense_Mutation 5 68581193 G A 45 65 BRCA TCGA-A2-A0YK HMGCR SNP Missense_Mutation 5 74647013 C G 29 55 BRCA TCGA-A2-A0YK AP3B1 SNP Silent 5 77590302 G A 37 50 BRCA TCGA-A2-A0YK PAPD4 SNP Silent 5 78919237 C T 29 56 BRCA TCGA-A2-A0YK GPR6 SNP Missense_Mutation 6 110301388 C G 32 99 BRCA TCGA-A2-A0YK PTPRK SNP Nonsense_Mutation 6 128410949 G A 45 86 BRCA TCGA-A2-A0YK CTGF SNP Missense_Mutation 6 132271151 C G 32 100 BRCA TCGA-A2-A0YK UTRN SNP Missense_Mutation 6 145103087 G A 45 73 BRCA TCGA-A2-A0YK UST SNP Missense_Mutation 6 149395130 C T 29 62 BRCA TCGA-A2-A0YK PNLDC1 SNP Silent 6 160222208 C A 32 57 BRCA TCGA-A2-A0YK KIF13A SNP Missense_Mutation 6 17796927 T C 51 76 BRCA TCGA-A2-A0YK ZNF165 SNP Missense_Mutation 6 28056897 G C 33 56 BRCA TCGA-A2-A0YK TCP11 SNP Missense_Mutation 6 35086222 G T 33 72 BRCA TCGA-A2-A0YK ABCC10 SNP Silent 6 43403563 C G 30 58 BRCA TCGA-A2-A0YK MMS22L SNP Missense_Mutation 6 97715767 G A 45 95 BRCA TCGA-A2-A0YK ARMC10 SNP Nonsense_Mutation 7 102738803 C T 31 66 BRCA TCGA-A2-A0YK EPHB6 SNP Missense_Mutation 7 142564664 G C 33 75 BRCA TCGA-A2-A0YK PEX1 SNP Missense_Mutation 7 92147080 C T 30 69 BRCA TCGA-A2-A0YK SLC25A13 SNP Silent 7 95906630 G A 40 58 BRCA TCGA-A2-A0YK ARPC1A SNP Silent 7 98951679 G C 41 49 BRCA TCGA-A2-A0YK CYP3A43 SNP Missense_Mutation 7 99457509 G C 45 86 BRCA TCGA-A2-A0YK COPS6 SNP Nonsense_Mutation 7 99687264 G T 41 98 BRCA TCGA-A2-A0YK VPS13B SNP Silent 8 100729481 G A 45 47 BRCA TCGA-A2-A0YK DENND3 SNP Missense_Mutation 8 142166000 C G 30 91 BRCA TCGA-A2-A0YK CSMD1 SNP Missense_Mutation 8 3045463 C T 30 100 BRCA TCGA-A2-A0YK ST18 SNP Missense_Mutation 8 53038648 C T 29 97 BRCA TCGA-A2-A0YK KCNB2 SNP Silent 8 73480017 G A 37 44 BRCA TCGA-A2-A0YK LRRCC1 SNP Missense_Mutation 8 86047157 G C 33 91 BRCA TCGA-A2-A0YK DCAF4L2 SNP Missense_Mutation 8 88885220 C T 30 59 BRCA TCGA-A2-A0YK TLR4 SNP Missense_Mutation 9 120476002 C G 32 47 BRCA TCGA-A2-A0YK FRMPD1 SNP Missense_Mutation 9 37735702 G A 40 52 BRCA TCGA-A2-A0YK GLIS3 SNP Silent 9 4117903 G A 48 60 BRCA TCGA-A2-A0YL ETNK2 SNP Missense_Mutation 1 204103702 G C 33 59 BRCA TCGA-A2-A0YL RGS7 SNP Silent 1 240976995 G A 40 49 BRCA TCGA-A2-A0YL ILK SNP Missense_Mutation 11 6631001 G A 47 58 BRCA TCGA-A2-A0YL EIF5 SNP Missense_Mutation 14 103803097 C T 29 98 BRCA TCGA-A2-A0YL SGSM2 SNP Missense_Mutation 17 2276709 G A 41 97 BRCA TCGA-A2-A0YL NF1 SNP Nonsense_Mutation 17 29557890 G A 43 97 BRCA TCGA-A2-A0YL NF1 INS Frame_Shift_Ins 17 29663859 - C 61 47 BRCA TCGA-A2-A0YL LOXHD1 SNP Missense_Mutation 18 44229157 C T 30 97 BRCA TCGA-A2-A0YL LMTK3 SNP Splice_site 19 48989044 G T 43 68 BRCA TCGA-A2-A0YL MAP2 SNP Nonsense_Mutation 2 210574677 C G 29 97 BRCA TCGA-A2-A0YL TRAPPC10 SNP Missense_Mutation 21 45513974 G A 40 59 BRCA TCGA-A2-A0YL TRPM2 SNP Silent 21 45833784 C T 29 78 BRCA TCGA-A2-A0YL CABIN1 SNP Silent 22 24573575 C T 22 56 BRCA TCGA-A2-A0YL TTLL1 SNP Missense_Mutation 22 43435850 G C 45 77 BRCA TCGA-A2-A0YL GABRE SNP Silent 23 151128423 G A 33 47 BRCA TCGA-A2-A0YL FAM50A SNP Silent 23 153674859 C T 27 30 BRCA TCGA-A2-A0YL HSD17B10 SNP Missense_Mutation 23 53460760 C T 30 93 BRCA TCGA-A2-A0YL PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A2-A0YL MSX2 SNP Nonsense_Mutation 5 174156269 C T 29 100 BRCA TCGA-A2-A0YL FAM75C1 SNP Silent 9 90537489 G T 42 47 BRCA TCGA-A2-A0YM KIF1B SNP Silent 1 10355754 A T 15 50 BRCA TCGA-A2-A0YM DENND2D SNP Silent 1 111742287 T C 55 38 BRCA TCGA-A2-A0YM ZNF687 SNP Missense_Mutation 1 151261988 A G 5 76 BRCA TCGA-A2-A0YM FLG SNP Missense_Mutation 1 152278649 C G 29 45 BRCA TCGA-A2-A0YM SPTA1 SNP Missense_Mutation 1 158583650 C T 29 95 BRCA TCGA-A2-A0YM OR6K2 SNP Missense_Mutation 1 158669827 C A 20 55 BRCA TCGA-A2-A0YM HIVEP3 SNP Missense_Mutation 1 42048715 C T 23 97 BRCA TCGA-A2-A0YM WDR65 SNP Missense_Mutation 1 43672428 T C 55 75 BRCA TCGA-A2-A0YM NMT2 SNP Nonsense_Mutation 10 15151734 G T 48 78 BRCA TCGA-A2-A0YM ARMC4 SNP Missense_Mutation 10 28224074 C T 19 56 BRCA TCGA-A2-A0YM SVIL SNP Nonsense_Mutation 10 29813436 G A 45 99 BRCA TCGA-A2-A0YM SDHD SNP Silent 11 111958687 G A 37 48 BRCA TCGA-A2-A0YM GRAMD1B SNP Silent 11 123479407 G A 36 77 BRCA TCGA-A2-A0YM IGSF22 SNP Missense_Mutation 11 18733928 C T 19 48 BRCA TCGA-A2-A0YM OR5T3 SNP Silent 11 56019960 T C 64 10 BRCA TCGA-A2-A0YM CCDC83 SNP Missense_Mutation 11 85623726 C T 30 35 BRCA TCGA-A2-A0YM TYR SNP Silent 11 88911667 T C 51 57 BRCA TCGA-A2-A0YM SRRM4 SNP Silent 12 119594594 G A 37 43 BRCA TCGA-A2-A0YM OGFOD2 SNP Missense_Mutation 12 123461289 G C 39 69 BRCA TCGA-A2-A0YM ALG10B SNP Missense_Mutation 12 38712083 A C 8 43 BRCA TCGA-A2-A0YM POU6F1 SNP Missense_Mutation 12 51584232 C T 27 98 BRCA TCGA-A2-A0YM MCF2L SNP Missense_Mutation 13 113622966 G C 41 55 BRCA TCGA-A2-A0YM HECTD1 SNP Splice_site 14 31675003 G C 40 100 BRCA TCGA-A2-A0YM PSTPIP1 SNP Missense_Mutation 15 77310845 G A 39 68 BRCA TCGA-A2-A0YM TMEM204 SNP Missense_Mutation 16 1604885 C T 19 99 BRCA TCGA-A2-A0YM CLDN9 SNP Silent 16 3063852 C G 22 48 BRCA TCGA-A2-A0YM SYCE1L SNP Missense_Mutation 16 77240349 T A 58 50 BRCA TCGA-A2-A0YM SHMT1 SNP Silent 17 18232668 C G 26 43 BRCA TCGA-A2-A0YM TAOK1 SNP Missense_Mutation 17 27825439 T G 60 92 BRCA TCGA-A2-A0YM ATAD5 SNP Nonsense_Mutation 17 29196617 C G 29 93 BRCA TCGA-A2-A0YM CD79B SNP Missense_Mutation 17 62007688 A G 9 43 BRCA TCGA-A2-A0YM ELP5 SNP Missense_Mutation 17 7162022 C G 26 50 BRCA TCGA-A2-A0YM HN1 SNP Missense_Mutation 17 73132265 C A 18 82 BRCA TCGA-A2-A0YM TP53 DEL Frame_Shift_Del 17 7574030 G - 39 58 BRCA TCGA-A2-A0YM DNAH2 SNP Missense_Mutation 17 7708622 G A 39 95 BRCA TCGA-A2-A0YM CHD3 SNP Missense_Mutation 17 7800561 G A 40 83 BRCA TCGA-A2-A0YM UNC13A SNP Missense_Mutation 19 17756618 G A 38 90 BRCA TCGA-A2-A0YM NUP62 SNP Missense_Mutation 19 50411501 C G 29 67 BRCA TCGA-A2-A0YM ZNF426 SNP Missense_Mutation 19 9639430 A G 14 54 BRCA TCGA-A2-A0YM TUBA3D SNP Missense_Mutation 2 132237879 G A 37 84 BRCA TCGA-A2-A0YM DYTN SNP Missense_Mutation 2 207557962 G A 38 41 BRCA TCGA-A2-A0YM COL6A3 SNP Missense_Mutation 2 238245104 G A 40 57 BRCA TCGA-A2-A0YM NLRC4 SNP Missense_Mutation 2 32476335 C A 19 75 BRCA TCGA-A2-A0YM SRBD1 DEL Frame_Shift_Del 2 45774701 G - 39 73 BRCA TCGA-A2-A0YM SRBD1 SNP Silent 2 45774705 G A 34 49 BRCA TCGA-A2-A0YM CTNNA2 SNP Missense_Mutation 2 80801302 G A 38 72 BRCA TCGA-A2-A0YM TASP1 INS In_Frame_Ins 20 13610600 - CCT 34 58 BRCA TCGA-A2-A0YM SH3BGR SNP Missense_Mutation 21 40834367 G A 33 100 BRCA TCGA-A2-A0YM CACNA1F SNP Missense_Mutation 23 49065105 C T 23 48 BRCA TCGA-A2-A0YM MYH15 SNP Silent 3 108220616 G C 45 59 BRCA TCGA-A2-A0YM C3orf30 SNP Missense_Mutation 3 118867057 G T 43 54 BRCA TCGA-A2-A0YM C3orf36 SNP Missense_Mutation 3 133647451 G C 33 52 BRCA TCGA-A2-A0YM PLCL2 SNP Missense_Mutation 3 17051565 G C 44 100 BRCA TCGA-A2-A0YM ABCF3 SNP Missense_Mutation 3 183905743 G C 45 95 BRCA TCGA-A2-A0YM TRA2B SNP Missense_Mutation 3 185644497 C T 30 76 BRCA TCGA-A2-A0YM SCN11A SNP Missense_Mutation 3 38924780 G T 48 87 BRCA TCGA-A2-A0YM GNL3 SNP Missense_Mutation 3 52726938 C T 23 96 BRCA TCGA-A2-A0YM GLT8D1 SNP Missense_Mutation 3 52729961 G A 39 99 BRCA TCGA-A2-A0YM NSUN7 SNP Missense_Mutation 4 40810797 C G 29 73 BRCA TCGA-A2-A0YM SDAD1 SNP Silent 4 76891502 C G 17 69 BRCA TCGA-A2-A0YM PRKG2 SNP Nonsense_Mutation 4 82092953 G A 37 58 BRCA TCGA-A2-A0YM HPGDS SNP Missense_Mutation 4 95223325 C A 22 58 BRCA TCGA-A2-A0YM PCDHA12 SNP Silent 5 140256728 C T 19 43 BRCA TCGA-A2-A0YM AP3B1 SNP Silent 5 77590365 T A 54 44 BRCA TCGA-A2-A0YM HIST1H4L SNP Missense_Mutation 6 27841182 C T 31 82 BRCA TCGA-A2-A0YM WDR46 SNP Missense_Mutation 6 33248585 G A 42 49 BRCA TCGA-A2-A0YM SYNGAP1 SNP Missense_Mutation 6 33410890 G A 38 76 BRCA TCGA-A2-A0YM PEX6 SNP Splice_Site 6 42934186 C T 32 96 BRCA TCGA-A2-A0YM KCND2 SNP Missense_Mutation 7 119915032 G A 37 100 BRCA TCGA-A2-A0YM TNRC18 SNP Missense_Mutation 7 5396789 C G 20 57 BRCA TCGA-A2-A0YM AKAP9 SNP Missense_Mutation 7 91729014 C A 30 55 BRCA TCGA-A2-A0YM KIAA0368 SNP Silent 9 114156470 G A 45 56 BRCA TCGA-A2-A0YM CDK5RAP2 SNP Missense_Mutation 9 123249710 G T 45 62 BRCA TCGA-A2-A0YM DMRTA1 SNP Missense_Mutation 9 22451752 T C 58 58 BRCA TCGA-A2-A0YT SLAMF7 SNP Nonsense_Mutation 1 160718252 C A 17 56 BRCA TCGA-A2-A0YT MRTO4 SNP Missense_Mutation 1 19584466 G A 38 59 BRCA TCGA-A2-A0YT NID1 SNP Silent 1 236192956 C T 26 46 BRCA TCGA-A2-A0YT ABCC2 SNP Silent 10 101591523 C T 23 47 BRCA TCGA-A2-A0YT C10orf79 SNP Missense_Mutation 10 105942201 C T 27 61 BRCA TCGA-A2-A0YT RGS10 SNP Missense_Mutation 10 121275051 G C 44 52 BRCA TCGA-A2-A0YT WDFY4 SNP Silent 10 50165257 C T 19 43 BRCA TCGA-A2-A0YT GUCY1A2 SNP Nonsense_Mutation 11 106810893 C A 29 72 BRCA TCGA-A2-A0YT BACE1 SNP Silent 11 117163790 G A 33 100 BRCA TCGA-A2-A0YT BACE1 SNP Silent 11 117163803 G A 45 64 BRCA TCGA-A2-A0YT BACE1 SNP Silent 11 117163821 G A 45 77 BRCA TCGA-A2-A0YT BACE1 SNP Silent 11 117164599 G A 37 36 BRCA TCGA-A2-A0YT TMPRSS4 SNP Missense_Mutation 11 117988053 G A 45 77 BRCA TCGA-A2-A0YT NUP160 SNP Missense_Mutation 11 47833684 T G 55 68 BRCA TCGA-A2-A0YT OR5D13 SNP Missense_Mutation 11 55541605 G A 37 50 BRCA TCGA-A2-A0YT OR5D13 SNP Silent 11 55541783 G A 45 45 BRCA TCGA-A2-A0YT ZP1 SNP Silent 11 60637860 C T 31 30 BRCA TCGA-A2-A0YT ZP1 SNP Silent 11 60640695 C T 30 66 BRCA TCGA-A2-A0YT NPAS4 SNP Missense_Mutation 11 66189989 G A 38 90 BRCA TCGA-A2-A0YT ANO1 SNP Missense_Mutation 11 70033901 G C 41 97 BRCA TCGA-A2-A0YT ANO1 SNP Silent 11 70033915 G A 33 83 BRCA TCGA-A2-A0YT C12orf51 SNP Missense_Mutation 12 112690356 A G 9 61 BRCA TCGA-A2-A0YT DNAH10 SNP Missense_Mutation 12 124414242 C T 19 83 BRCA TCGA-A2-A0YT VWF SNP Nonsense_Mutation 12 6230460 G A 39 65 BRCA TCGA-A2-A0YT ZFC3H1 SNP Missense_Mutation 12 72027055 G C 34 79 BRCA TCGA-A2-A0YT STARD13 SNP Silent 13 33700224 G A 37 28 BRCA TCGA-A2-A0YT VPS36 SNP Silent 13 52990193 A G 5 89 BRCA TCGA-A2-A0YT LECT1 SNP Missense_Mutation 13 53298164 C T 27 51 BRCA TCGA-A2-A0YT GPC6 SNP Missense_Mutation 13 93879855 A T 14 70 BRCA TCGA-A2-A0YT DCT SNP Missense_Mutation 13 95131476 A C 5 72 BRCA TCGA-A2-A0YT MAX SNP Missense_Mutation 14 65569045 C T 31 67 BRCA TCGA-A2-A0YT GOLGA6L2 INS Frame_Shift_Ins 15 23685100 - C 46 47 BRCA TCGA-A2-A0YT MYO5C DEL Frame_Shift_Del 15 52500831 CTAAATGTTCCTTA - 32 85 BRCA TCGA-A2-A0YT TMC7 SNP Missense_Mutation 16 19063095 G A 39 97 BRCA TCGA-A2-A0YT MYH8 SNP Missense_Mutation 17 10310046 C T 30 99 BRCA TCGA-A2-A0YT PLD2 SNP Missense_Mutation 17 4722079 C T 31 62 BRCA TCGA-A2-A0YT ERN1 SNP Missense_Mutation 17 62130664 G A 37 98 BRCA TCGA-A2-A0YT TP53 SNP Missense_Mutation 17 7577517 A C 12 86 BRCA TCGA-A2-A0YT BAHCC1 SNP Silent 17 79426117 C T 19 49 BRCA TCGA-A2-A0YT NLRP7 SNP Missense_Mutation 19 55449557 G A 37 40 BRCA TCGA-A2-A0YT NLRP9 SNP Missense_Mutation 19 56243942 C A 21 63 BRCA TCGA-A2-A0YT OR7G2 SNP Silent 19 9213395 C T 27 22 BRCA TCGA-A2-A0YT TTN SNP Missense_Mutation 2 179452261 C G 19 100 BRCA TCGA-A2-A0YT RAB17 SNP Missense_Mutation 2 238483706 G T 33 60 BRCA TCGA-A2-A0YT SPTBN1 SNP Missense_Mutation 2 54753679 C T 27 71 BRCA TCGA-A2-A0YT C20orf132 SNP Missense_Mutation 20 35788533 C T 27 52 BRCA TCGA-A2-A0YT CECR5 SNP Missense_Mutation 22 17623996 C T 27 70 BRCA TCGA-A2-A0YT BCL2L13 SNP Missense_Mutation 22 18185061 G A 40 64 BRCA TCGA-A2-A0YT SELO SNP Missense_Mutation 22 50649129 G T 35 59 BRCA TCGA-A2-A0YT RHOXF2 SNP Nonsense_Mutation 23 119293026 C A 31 10 BRCA TCGA-A2-A0YT GRIA3 SNP Splice_Site 23 122536950 G C 36 94 BRCA TCGA-A2-A0YT OFD1 SNP Missense_Mutation 23 13778585 G A 34 48 BRCA TCGA-A2-A0YT MAP7D2 SNP Missense_Mutation 23 20070998 C G 31 55 BRCA TCGA-A2-A0YT MAGEB16 SNP Missense_Mutation 23 35820494 C A 30 41 BRCA TCGA-A2-A0YT CASK SNP Missense_Mutation 23 41419042 G A 37 82 BRCA TCGA-A2-A0YT MSN SNP Missense_Mutation 23 64957138 G A 45 96 BRCA TCGA-A2-A0YT ATP6V1A SNP Missense_Mutation 3 113507649 G C 36 84 BRCA TCGA-A2-A0YT PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-A2-A0YT ATXN7 SNP Silent 3 63965739 A C 8 33 BRCA TCGA-A2-A0YT GRM7 SNP Missense_Mutation 3 7728066 G C 33 53 BRCA TCGA-A2-A0YT INPP4B SNP Missense_Mutation 4 143094874 T G 49 58 BRCA TCGA-A2-A0YT GAB1 SNP Missense_Mutation 4 144380559 T C 49 90 BRCA TCGA-A2-A0YT LPHN3 SNP Missense_Mutation 4 62801665 C G 17 95 BRCA TCGA-A2-A0YT OR2J1 SNP Missense_Mutation 6 29069038 G A 38 57 BRCA TCGA-A2-A0YT OR2J2 SNP Missense_Mutation 6 29141621 T C 55 52 BRCA TCGA-A2-A0YT LOC407835 SNP Missense_Mutation 7 128767280 C T 27 58 BRCA TCGA-A2-A0YT MLL3 INS Frame_Shift_Ins 7 151945659 - T 15 57 BRCA TCGA-A2-A0YT GET4 SNP Missense_Mutation 7 930646 C T 30 98 BRCA TCGA-A2-A0YT SGCZ SNP Nonsense_Mutation 8 14412342 G A 38 63 BRCA TCGA-A2-A0YT ODF2 SNP Missense_Mutation 9 131246313 C T 31 70 BRCA TCGA-A2-A0YT SMARCA2 SNP Silent 9 2029094 G T 42 51 BRCA TCGA-A2-A0YT ANKRD20A4 SNP Missense_Mutation 9 69423920 G A 40 57 BRCA TCGA-A2-A1FV GPR61 SNP Missense_Mutation 1 110086977 G A 38 58 BRCA TCGA-A2-A1FV OR2L3 SNP Missense_Mutation 1 248224884 A G 10 53 BRCA TCGA-A2-A1FV LEPRE1 SNP Missense_Mutation 1 43212929 C G 31 50 BRCA TCGA-A2-A1FV LDLRAD1 SNP Missense_Mutation 1 54479914 G A 44 53 BRCA TCGA-A2-A1FV MCOLN2 SNP Missense_Mutation 1 85397158 T G 51 39 BRCA TCGA-A2-A1FV LOXL4 SNP Missense_Mutation 10 100013398 G T 38 96 BRCA TCGA-A2-A1FV HOXC4 SNP Silent 12 54448950 G A 38 66 BRCA TCGA-A2-A1FV ZFC3H1 SNP Missense_Mutation 12 72037937 G T 45 94 BRCA TCGA-A2-A1FV RYR3 SNP Nonsense_Mutation 15 33961576 C T 29 81 BRCA TCGA-A2-A1FV ABCC6 SNP Missense_Mutation 16 16255417 G A 34 75 BRCA TCGA-A2-A1FV CDH1 INS Frame_Shift_Ins 16 68842417 - G 30 85 BRCA TCGA-A2-A1FV CCL13 INS Frame_Shift_Ins 17 32683553 - C 58 53 BRCA TCGA-A2-A1FV SGCA SNP Missense_Mutation 17 48248012 A G 10 79 BRCA TCGA-A2-A1FV RAB37 SNP Missense_Mutation 17 72739280 G A 38 93 BRCA TCGA-A2-A1FV ICAM4 SNP Missense_Mutation 19 10398280 G A 40 53 BRCA TCGA-A2-A1FV TM6SF2 SNP Missense_Mutation 19 19379464 G A 38 45 BRCA TCGA-A2-A1FV SSFA2 SNP Missense_Mutation 2 182765477 T G 50 65 BRCA TCGA-A2-A1FV GIGYF2 SNP Nonsense_Mutation 2 233655446 C T 19 99 BRCA TCGA-A2-A1FV RAD21L1 SNP Silent 20 1209137 T C 52 52 BRCA TCGA-A2-A1FV DLGAP4 SNP Missense_Mutation 20 35060343 C T 21 100 BRCA TCGA-A2-A1FV PHACTR3 SNP Missense_Mutation 20 58381222 G C 39 98 BRCA TCGA-A2-A1FV SMARCA1 SNP Silent 23 128657222 C T 23 56 BRCA TCGA-A2-A1FV USP9X DEL Frame_Shift_Del 23 40990740 AG - 3 58 BRCA TCGA-A2-A1FV PARP14 SNP Missense_Mutation 3 122419979 C G 24 52 BRCA TCGA-A2-A1FV SRPRB SNP Missense_Mutation 3 133524816 G A 44 51 BRCA TCGA-A2-A1FV KIAA1109 INS Frame_Shift_Ins 4 123227196 - A 49 51 BRCA TCGA-A2-A1FV GRIA1 SNP Silent 5 153143997 C T 22 54 BRCA TCGA-A2-A1FV GRIA1 SNP Silent 5 153175111 C T 19 99 BRCA TCGA-A2-A1FV NUP155 SNP Splice_site 5 37310654 C G 24 90 BRCA TCGA-A2-A1FV SHPRH SNP Nonsense_Mutation 6 146240555 G A 40 64 BRCA TCGA-A2-A1FV UST SNP Missense_Mutation 6 149275038 G A 37 86 BRCA TCGA-A2-A1FV TCP10 DEL Frame_Shift_Del 6 167787875 CT - 20 48 BRCA TCGA-A2-A1FV ARFGEF1 SNP Missense_Mutation 8 68130367 C T 29 100 BRCA TCGA-A2-A1FV UBE2W SNP Missense_Mutation 8 74717957 C T 31 100 BRCA TCGA-A2-A1FV PTPN3 SNP Missense_Mutation 9 112151535 G A 40 100 BRCA TCGA-A2-A1FV SVEP1 SNP Missense_Mutation 9 113219551 G A 41 58 BRCA TCGA-A2-A1FV RCL1 SNP Missense_Mutation 9 4827053 C T 23 50 BRCA TCGA-A2-A1FV TRPM6 SNP Missense_Mutation 9 77354721 A G 4 94 BRCA TCGA-A2-A1FV RMI1 SNP Silent 9 86617623 C T 30 55 BRCA TCGA-A2-A1FW ZNF648 SNP Silent 1 182025787 G A 38 56 BRCA TCGA-A2-A1FW CACNA1S SNP Missense_Mutation 1 201009077 C T 30 54 BRCA TCGA-A2-A1FW CACNA1S SNP Missense_Mutation 1 201013506 C T 30 95 BRCA TCGA-A2-A1FW SRGAP2 SNP Silent 1 206611342 C T 19 51 BRCA TCGA-A2-A1FW DISC1 SNP Silent 1 231885724 G T 46 53 BRCA TCGA-A2-A1FW OR2G2 SNP Silent 1 247752384 C T 31 34 BRCA TCGA-A2-A1FW CACHD1 SNP Missense_Mutation 1 65157044 C T 30 96 BRCA TCGA-A2-A1FW SLC2A7 SNP Missense_Mutation 1 9079361 C T 25 56 BRCA TCGA-A2-A1FW GPRIN2 INS Frame_Shift_Ins 10 46999606 - GA 43 36 BRCA TCGA-A2-A1FW LDB3 SNP Missense_Mutation 10 88476372 C T 18 65 BRCA TCGA-A2-A1FW USH1C SNP Nonsense_Mutation 11 17545007 C A 31 93 BRCA TCGA-A2-A1FW SART1 SNP Silent 11 65744012 C T 25 52 BRCA TCGA-A2-A1FW TESC SNP Missense_Mutation 12 117494644 C T 31 90 BRCA TCGA-A2-A1FW SLC39A2 DEL Frame_Shift_Del 14 21467657 CTCA - 32 51 BRCA TCGA-A2-A1FW HECTD1 SNP Nonsense_Mutation 14 31605749 G C 44 57 BRCA TCGA-A2-A1FW PCNXL4 SNP Silent 14 60591901 T G 56 47 BRCA TCGA-A2-A1FW SYNE2 SNP Missense_Mutation 14 64608223 T G 62 50 BRCA TCGA-A2-A1FW FAM71D SNP Missense_Mutation 14 67671595 T G 62 74 BRCA TCGA-A2-A1FW CHGA SNP Silent 14 93397599 G A 39 46 BRCA TCGA-A2-A1FW DUOX1 SNP Missense_Mutation 15 45448061 C A 20 60 BRCA TCGA-A2-A1FW CEP152 SNP Missense_Mutation 15 49044602 G T 35 63 BRCA TCGA-A2-A1FW MYO5A SNP Nonsense_Mutation 15 52643662 G T 45 96 BRCA TCGA-A2-A1FW TBC1D21 SNP Missense_Mutation 15 74177166 G T 40 65 BRCA TCGA-A2-A1FW ABHD2 SNP Missense_Mutation 15 89659692 A G 14 58 BRCA TCGA-A2-A1FW AMDHD2 SNP Missense_Mutation 16 2580551 T A 55 52 BRCA TCGA-A2-A1FW DPEP3 SNP Silent 16 68011676 C T 23 29 BRCA TCGA-A2-A1FW ADAP2 SNP Missense_Mutation 17 29276342 G A 40 95 BRCA TCGA-A2-A1FW OR1A1 SNP Missense_Mutation 17 3119269 G A 42 73 BRCA TCGA-A2-A1FW CNTNAP1 SNP Silent 17 40837254 C T 31 51 BRCA TCGA-A2-A1FW MRC2 SNP Missense_Mutation 17 60768334 A G 2 73 BRCA TCGA-A2-A1FW ZNF521 SNP Silent 18 22807567 G A 38 44 BRCA TCGA-A2-A1FW RFX1 SNP Missense_Mutation 19 14076542 A C 11 85 BRCA TCGA-A2-A1FW F2RL3 SNP Missense_Mutation 19 17001214 G A 38 59 BRCA TCGA-A2-A1FW JAK3 SNP Missense_Mutation 19 17937697 C A 25 89 BRCA TCGA-A2-A1FW ZNF43 SNP Missense_Mutation 19 21991460 C A 26 72 BRCA TCGA-A2-A1FW ZNF507 SNP Splice_Site 19 32845865 T C 57 89 BRCA TCGA-A2-A1FW MEGF8 SNP Silent 19 42855839 C T 30 53 BRCA TCGA-A2-A1FW ODF3L2 SNP Silent 19 463919 C T 31 39 BRCA TCGA-A2-A1FW GLI2 SNP Missense_Mutation 2 121729565 G A 38 48 BRCA TCGA-A2-A1FW TTN SNP Missense_Mutation 2 179632645 C G 32 57 BRCA TCGA-A2-A1FW NCKAP1 SNP Missense_Mutation 2 183847589 C A 32 100 BRCA TCGA-A2-A1FW CDK5RAP1 SNP Missense_Mutation 20 31975264 G A 42 94 BRCA TCGA-A2-A1FW TSHZ2 SNP Missense_Mutation 20 51872726 C T 19 100 BRCA TCGA-A2-A1FW PAK7 SNP Silent 20 9561437 G A 40 48 BRCA TCGA-A2-A1FW KRTAP6-3 SNP Missense_Mutation 21 31965011 G A 47 68 BRCA TCGA-A2-A1FW WBP5 SNP Missense_Mutation 23 102612872 T G 56 65 BRCA TCGA-A2-A1FW TBC1D8B SNP Missense_Mutation 23 106096864 T C 52 84 BRCA TCGA-A2-A1FW PIGA SNP Missense_Mutation 23 15349901 C T 28 82 BRCA TCGA-A2-A1FW HUWE1 SNP Missense_Mutation 23 53652126 A G 16 87 BRCA TCGA-A2-A1FW SLC6A1 SNP Silent 3 11064046 C T 19 49 BRCA TCGA-A2-A1FW CCDC80 SNP Missense_Mutation 3 112326098 G A 38 79 BRCA TCGA-A2-A1FW NR1D2 SNP Silent 3 24003871 C T 26 67 BRCA TCGA-A2-A1FW VILL SNP Missense_Mutation 3 38047679 C T 23 50 BRCA TCGA-A2-A1FW ADAMTS9 SNP Missense_Mutation 3 64518862 A G 11 65 BRCA TCGA-A2-A1FW AIMP1 SNP Missense_Mutation 4 107249280 A G 16 18 BRCA TCGA-A2-A1FW KIAA1109 SNP Nonsense_Mutation 4 123111228 G T 45 86 BRCA TCGA-A2-A1FW NIPAL1 SNP Missense_Mutation 4 48038079 G A 34 51 BRCA TCGA-A2-A1FW AQPEP SNP Silent 5 115329524 T A 61 58 BRCA TCGA-A2-A1FW SIL1 SNP Splice_Site 5 138287476 C G 18 85 BRCA TCGA-A2-A1FW SLC45A2 SNP Missense_Mutation 5 33963829 C T 25 49 BRCA TCGA-A2-A1FW TDRD6 SNP Missense_Mutation 6 46660616 A T 16 58 BRCA TCGA-A2-A1FW MUC17 SNP Silent 7 100684336 A G 5 59 BRCA TCGA-A2-A1FW COL1A2 SNP Silent 7 94034183 T A 54 56 BRCA TCGA-A2-A1FW NUDCD1 SNP Missense_Mutation 8 110287602 C G 25 86 BRCA TCGA-A2-A1FW ZNF251 SNP Silent 8 145947416 G A 40 34 BRCA TCGA-A2-A1FW PREX2 SNP Missense_Mutation 8 69011939 G A 36 81 BRCA TCGA-A2-A1FW TLR4 SNP Missense_Mutation 9 120474689 G T 33 77 BRCA TCGA-A2-A1FX PIK3C2B SNP Missense_Mutation 1 204438798 C T 30 63 BRCA TCGA-A2-A1FX PLD5 SNP Missense_Mutation 1 242451687 G T 47 63 BRCA TCGA-A2-A1FX ATXN3 SNP Missense_Mutation 14 92562444 G A 33 94 BRCA TCGA-A2-A1FX RGMA SNP Missense_Mutation 15 93588269 C T 27 39 BRCA TCGA-A2-A1FX ZNF629 SNP Missense_Mutation 16 30793176 T C 55 54 BRCA TCGA-A2-A1FX UNC13D SNP Silent 17 73836636 C T 24 64 BRCA TCGA-A2-A1FX C18orf25 INS Frame_Shift_Ins 18 43833705 - T 42 84 BRCA TCGA-A2-A1FX STXBP2 SNP Missense_Mutation 19 7712614 C G 30 92 BRCA TCGA-A2-A1FX KRTAP19-2 SNP Missense_Mutation 21 31859634 A T 3 54 BRCA TCGA-A2-A1FX ERG SNP Missense_Mutation 21 39755519 G T 43 68 BRCA TCGA-A2-A1FX KRTAP10-7 SNP Missense_Mutation 21 46020889 T A 58 50 BRCA TCGA-A2-A1FX NRK SNP Missense_Mutation 23 105132399 G A 39 69 BRCA TCGA-A2-A1FX SMARCA1 SNP Missense_Mutation 23 128631871 A T 6 55 BRCA TCGA-A2-A1FX ZBTB38 SNP Missense_Mutation 3 141164333 G A 41 91 BRCA TCGA-A2-A1FX PLCH1 SNP Nonsense_Mutation 3 155232586 C A 32 97 BRCA TCGA-A2-A1FX ACVR2B SNP Silent 3 38519699 C T 31 45 BRCA TCGA-A2-A1FX CTNNA1 SNP Splice_Site 5 138264934 G T 33 100 BRCA TCGA-A2-A1FX ATXN1 SNP Silent 6 16306707 C T 23 49 BRCA TCGA-A2-A1FX ITPR3 SNP Missense_Mutation 6 33631568 C G 26 58 BRCA TCGA-A2-A1FX TRRAP SNP Silent 7 98527687 C T 31 96 BRCA TCGA-A2-A1FZ OSBPL9 SNP Missense_Mutation 1 52227617 A T 8 62 BRCA TCGA-A2-A1FZ RBM20 SNP Missense_Mutation 10 112583260 G T 45 54 BRCA TCGA-A2-A1FZ RHOBTB1 SNP Missense_Mutation 10 62671216 G A 38 87 BRCA TCGA-A2-A1FZ OR6X1 SNP Nonsense_Mutation 11 123624554 G A 40 49 BRCA TCGA-A2-A1FZ FLI1 SNP Splice_Site 11 128628222 G A 44 96 BRCA TCGA-A2-A1FZ NUP107 SNP Missense_Mutation 12 69135710 T C 51 61 BRCA TCGA-A2-A1FZ FOXA1 INS Frame_Shift_Ins 14 38060747 - T 28 63 BRCA TCGA-A2-A1FZ FAM179B SNP Missense_Mutation 14 45465069 G T 41 79 BRCA TCGA-A2-A1FZ ULK3 SNP Missense_Mutation 15 75131031 T C 52 61 BRCA TCGA-A2-A1FZ PLD6 SNP Missense_Mutation 17 17106185 G A 44 57 BRCA TCGA-A2-A1FZ FBXO15 SNP Nonsense_Mutation 18 71797870 G C 45 82 BRCA TCGA-A2-A1FZ ANKRD12 DEL Frame_Shift_Del 18 9255050 AA - 5 51 BRCA TCGA-A2-A1FZ TTYH1 SNP Missense_Mutation 19 54941109 C G 18 83 BRCA TCGA-A2-A1FZ SCN9A DEL Frame_Shift_Del 2 167141168 ACAA - 6 93 BRCA TCGA-A2-A1FZ LAMA5 SNP Silent 20 60937537 G A 46 56 BRCA TCGA-A2-A1FZ VSIG1 SNP Missense_Mutation 23 107310235 G T 37 44 BRCA TCGA-A2-A1FZ SLC6A14 SNP Silent 23 115574821 T C 57 55 BRCA TCGA-A2-A1FZ PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A2-A1FZ SEC24A SNP Missense_Mutation 5 133996823 G A 46 52 BRCA TCGA-A2-A1FZ ZNF879 SNP Missense_Mutation 5 178459857 T A 56 71 BRCA TCGA-A2-A1FZ MYB SNP Splice_site 6 135511266 T C 59 93 BRCA TCGA-A2-A1FZ DUS4L SNP Missense_Mutation 7 107215657 G T 43 52 BRCA TCGA-A2-A1FZ LUC7L2 DEL Splice_site 7 139083442 ATGT - 12 90 BRCA TCGA-A2-A1FZ MATN2 SNP Missense_Mutation 8 99039661 A C 4 46 BRCA TCGA-A2-A1FZ EHMT1 SNP Silent 9 140710464 G A 40 46 BRCA TCGA-A2-A1G0 LRRC4C SNP Missense_Mutation 11 40137268 G C 42 100 BRCA TCGA-A2-A1G0 WSCD2 SNP Silent 12 108618544 C T 30 85 BRCA TCGA-A2-A1G0 GRIN2B SNP Missense_Mutation 12 13715969 G T 46 75 BRCA TCGA-A2-A1G0 MAP3K12 SNP Splice_Site 12 53876974 C T 24 93 BRCA TCGA-A2-A1G0 PDS5B DEL Frame_Shift_Del 13 33247483 TTAAA - 64 93 BRCA TCGA-A2-A1G0 ARMC5 DNP Splice_Site 16 31474092 GG AT 35 59 BRCA TCGA-A2-A1G0 MEFV SNP Missense_Mutation 16 3293864 A G 8 56 BRCA TCGA-A2-A1G0 CDH1 SNP Missense_Mutation 16 68867353 A G 4 64 BRCA TCGA-A2-A1G0 MAP2K4 DEL Frame_Shift_Del 17 12032516 AC - 2 90 BRCA TCGA-A2-A1G0 XIRP2 SNP Missense_Mutation 2 168104843 C T 24 97 BRCA TCGA-A2-A1G0 MYT1L SNP Missense_Mutation 2 1842924 C T 27 100 BRCA TCGA-A2-A1G0 C2orf16 SNP Nonsense_Mutation 2 27802528 C A 29 55 BRCA TCGA-A2-A1G0 SHANK3 SNP Missense_Mutation 22 51121781 G A 40 90 BRCA TCGA-A2-A1G0 HDX SNP Missense_Mutation 23 83730290 T G 55 89 BRCA TCGA-A2-A1G0 PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-A2-A1G0 EXOSC9 SNP Missense_Mutation 4 122737961 C T 18 58 BRCA TCGA-A2-A1G0 BOD1L1 SNP Missense_Mutation 4 13601548 C T 31 79 BRCA TCGA-A2-A1G0 FAM153B SNP Missense_Mutation 5 175540973 C T 22 49 BRCA TCGA-A2-A1G0 TNXB SNP Missense_Mutation 6 32041597 G T 41 79 BRCA TCGA-A2-A1G0 ARL4A SNP Missense_Mutation 7 12728294 A G 11 57 BRCA TCGA-A2-A1G1 ATPAF1 SNP Silent 1 47119504 G A 33 56 BRCA TCGA-A2-A1G1 SEPHS1 SNP Silent 10 13378339 C T 19 44 BRCA TCGA-A2-A1G1 MCAM SNP Missense_Mutation 11 119185262 C T 23 72 BRCA TCGA-A2-A1G1 SF3B2 SNP Missense_Mutation 11 65826508 G A 42 96 BRCA TCGA-A2-A1G1 FAM186A SNP Missense_Mutation 12 50745739 A G 11 35 BRCA TCGA-A2-A1G1 SLC7A8 SNP Silent 14 23609736 G T 35 62 BRCA TCGA-A2-A1G1 CREBBP SNP Splice_site 16 3827658 T C 50 87 BRCA TCGA-A2-A1G1 CASC3 SNP Nonsense_Mutation 17 38296950 C A 29 66 BRCA TCGA-A2-A1G1 KRT31 SNP Silent 17 39551243 G T 45 69 BRCA TCGA-A2-A1G1 MRPS7 DEL Frame_Shift_Del 17 73259535 TG - 55 92 BRCA TCGA-A2-A1G1 TP53 SNP Splice_Site 17 7577609 C T 24 89 BRCA TCGA-A2-A1G1 MOCOS SNP Silent 18 33785062 G A 34 52 BRCA TCGA-A2-A1G1 LPPR2 SNP Missense_Mutation 19 11475316 C T 23 58 BRCA TCGA-A2-A1G1 TRIB2 SNP Missense_Mutation 2 12880637 G A 43 100 BRCA TCGA-A2-A1G1 XIRP2 SNP Missense_Mutation 2 168102346 G T 48 53 BRCA TCGA-A2-A1G1 TTN SNP Splice_site 2 179469435 C G 22 72 BRCA TCGA-A2-A1G1 AOX1 DEL Splice_site 2 201467067 AAGT - 1 69 BRCA TCGA-A2-A1G1 WDR12 DEL In_Frame_Del 2 203776179 GCGTGTTTGGAGCTGAGCCATG - 34 56 BRCA TCGA-A2-A1G1 BTG3 SNP Missense_Mutation 21 18971026 T G 51 81 BRCA TCGA-A2-A1G1 MAGEC1 SNP Missense_Mutation 23 140993611 T G 52 51 BRCA TCGA-A2-A1G1 MXRA5 SNP Missense_Mutation 23 3242907 C A 29 39 BRCA TCGA-A2-A1G1 SLC41A3 SNP Missense_Mutation 3 125727702 C T 31 65 BRCA TCGA-A2-A1G1 ZBTB38 SNP Silent 3 141161656 A C 11 38 BRCA TCGA-A2-A1G1 MUC4 SNP Missense_Mutation 3 195506990 C G 29 55 BRCA TCGA-A2-A1G1 KIAA1239 SNP Missense_Mutation 4 37446047 C A 21 99 BRCA TCGA-A2-A1G1 GABRP DEL Frame_Shift_Del 5 170239126 GAGAA - 37 74 BRCA TCGA-A2-A1G1 CENPK SNP Splice_site 5 64814460 T A 50 66 BRCA TCGA-A2-A1G1 TSPAN12 SNP Missense_Mutation 7 120446741 C A 20 56 BRCA TCGA-A2-A1G1 PTPRZ1 SNP Missense_Mutation 7 121659196 A G 8 73 BRCA TCGA-A2-A1G1 FAM86B1 SNP Missense_Mutation 8 12044262 G A 39 39 BRCA TCGA-A2-A1G1 CORO2A SNP Missense_Mutation 9 100888910 T G 59 53 BRCA TCGA-A2-A1G1 NFIB SNP Silent 9 14307139 C G 17 63 BRCA TCGA-A2-A1G4 SPATA21 SNP Silent 1 16730302 G C 43 51 BRCA TCGA-A2-A1G4 YBX1 SNP Missense_Mutation 1 43166508 A G 4 85 BRCA TCGA-A2-A1G4 GBP1 SNP Silent 1 89525988 C T 23 31 BRCA TCGA-A2-A1G4 MYOF SNP Silent 10 95085598 C T 28 56 BRCA TCGA-A2-A1G4 DCDC5 SNP Silent 11 30903588 A C 14 48 BRCA TCGA-A2-A1G4 OR52B4 SNP Silent 11 4389301 G A 33 39 BRCA TCGA-A2-A1G4 HNRNPUL2 SNP Silent 11 62487502 C T 32 57 BRCA TCGA-A2-A1G4 PRDX5 SNP Missense_Mutation 11 64087239 G A 45 91 BRCA TCGA-A2-A1G4 KDM2A SNP Nonsense_Mutation 11 66995613 C T 29 97 BRCA TCGA-A2-A1G4 AMOTL1 SNP Missense_Mutation 11 94533105 T A 55 90 BRCA TCGA-A2-A1G4 LRP1 SNP Missense_Mutation 12 57589072 C T 22 96 BRCA TCGA-A2-A1G4 CIDEB INS Frame_Shift_Ins 14 24775709 - T 29 60 BRCA TCGA-A2-A1G4 CIDEB DNP Missense_Mutation 14 24775714 GT CC 36 59 BRCA TCGA-A2-A1G4 SERPINA12 SNP Missense_Mutation 14 94964133 A G 6 52 BRCA TCGA-A2-A1G4 FAN1 SNP Missense_Mutation 15 31206233 T A 60 88 BRCA TCGA-A2-A1G4 USP8 SNP Silent 15 50769138 T C 51 58 BRCA TCGA-A2-A1G4 MAP2K4 SNP Missense_Mutation 17 12016616 G T 36 94 BRCA TCGA-A2-A1G4 TM6SF2 DNP Missense_Mutation 19 19375576 GC AA 38 65 BRCA TCGA-A2-A1G4 CGB8 SNP Silent 19 49551573 C T 27 42 BRCA TCGA-A2-A1G4 SLC9A4 SNP Silent 2 103095467 C T 27 45 BRCA TCGA-A2-A1G4 ITGA4 SNP Missense_Mutation 2 182339788 A G 8 52 BRCA TCGA-A2-A1G4 BEX4 SNP Missense_Mutation 23 102471238 G A 43 48 BRCA TCGA-A2-A1G4 ATP6AP1 SNP Missense_Mutation 23 153657488 C A 30 74 BRCA TCGA-A2-A1G4 SH3BGRL SNP Splice_site 23 80552725 G A 45 59 BRCA TCGA-A2-A1G4 COL6A5 DEL Frame_Shift_Del 3 130159404 CTAT - 24 49 BRCA TCGA-A2-A1G4 ETV5 SNP Missense_Mutation 3 185783693 A T 8 35 BRCA TCGA-A2-A1G4 PPARGC1A SNP Missense_Mutation 4 23816043 A T 14 91 BRCA TCGA-A2-A1G4 S100P DEL In_Frame_Del 4 6695772 AGA - 11 62 BRCA TCGA-A2-A1G4 SLC22A16 SNP Missense_Mutation 6 110763635 C A 18 49 BRCA TCGA-A2-A1G4 MCM9 SNP Silent 6 119245057 G A 35 54 BRCA TCGA-A2-A1G4 MYO6 SNP Missense_Mutation 6 76538265 A T 4 89 BRCA TCGA-A2-A1G4 IBTK SNP Silent 6 82924534 A G 9 62 BRCA TCGA-A2-A1G4 ZAN DEL Frame_Shift_Del 7 100364159 GTGGT - 44 52 BRCA TCGA-A2-A1G4 RXRA SNP Missense_Mutation 9 137309085 C T 23 94 BRCA TCGA-A2-A1G4 FOXD4L3 SNP Missense_Mutation 9 70918829 A T 12 48 BRCA TCGA-A2-A1G6 PM20D1 SNP Missense_Mutation 1 205819079 G C 33 75 BRCA TCGA-A2-A1G6 KLC3 SNP Missense_Mutation 19 45849975 G T 34 62 BRCA TCGA-A2-A1G6 R3HDML SNP Missense_Mutation 20 42965985 T A 51 88 BRCA TCGA-A2-A259 PTPRQ SNP Missense_Mutation 12 80928679 G C 37 84 BRCA TCGA-A2-A259 WDR72 SNP Nonsense_Mutation 15 54025259 G A 38 59 BRCA TCGA-A2-A259 SIN3A DEL In_Frame_Del 15 75676715 TATTTTCTGCCAGGTAAA - 61 70 BRCA TCGA-A2-A259 ILF3 SNP Missense_Mutation 19 10781834 A G 12 58 BRCA TCGA-A2-A259 CLEC17A SNP Splice_site 19 14706127 G A 39 48 BRCA TCGA-A2-A259 RPS5 SNP Missense_Mutation 19 58904526 G A 37 92 BRCA TCGA-A2-A259 SLC4A10 SNP Missense_Mutation 2 162815009 C T 26 100 BRCA TCGA-A2-A259 AFF2 SNP Missense_Mutation 23 148039966 C T 21 65 BRCA TCGA-A2-A259 PLXNA3 SNP Silent 23 153696522 G T 46 60 BRCA TCGA-A2-A259 NONO SNP Missense_Mutation 23 70511766 G A 47 97 BRCA TCGA-A2-A259 OSBPL11 SNP Missense_Mutation 3 125297815 C G 28 98 BRCA TCGA-A2-A259 CEP70 SNP Missense_Mutation 3 138290122 C T 32 64 BRCA TCGA-A2-A259 MAP3K1 SNP Missense_Mutation 5 56184093 G C 47 94 BRCA TCGA-A2-A259 GPR110 SNP Missense_Mutation 6 46976736 A C 6 60 BRCA TCGA-A2-A259 MANEA INS Frame_Shift_Ins 6 96034869 - TATA 48 47 BRCA TCGA-A2-A259 MLL3 SNP Nonsense_Mutation 7 152027750 G A 45 73 BRCA TCGA-A2-A259 ZHX2 SNP Silent 8 123964746 G A 33 70 BRCA TCGA-A2-A259 VAV2 SNP Silent 9 136699429 G A 40 48 BRCA TCGA-A2-A25A PEX14 SNP Silent 1 10596278 G T 39 44 BRCA TCGA-A2-A25A ASH1L SNP Missense_Mutation 1 155429604 C G 32 52 BRCA TCGA-A2-A25A SELP SNP Missense_Mutation 1 169565174 G T 47 72 BRCA TCGA-A2-A25A ASPM SNP Missense_Mutation 1 197099176 C T 30 97 BRCA TCGA-A2-A25A LAMB3 SNP Missense_Mutation 1 209791254 C T 29 85 BRCA TCGA-A2-A25A MARK1 SNP Missense_Mutation 1 220825486 G T 39 91 BRCA TCGA-A2-A25A PARP1 SNP Missense_Mutation 1 226573297 C T 31 100 BRCA TCGA-A2-A25A CDC42BPA SNP Missense_Mutation 1 227288919 G T 44 72 BRCA TCGA-A2-A25A HPCAL4 SNP Missense_Mutation 1 40150207 G T 38 55 BRCA TCGA-A2-A25A ERI3 SNP Missense_Mutation 1 44750563 G T 47 72 BRCA TCGA-A2-A25A GPX7 SNP Missense_Mutation 1 53073967 G T 47 97 BRCA TCGA-A2-A25A ABCC2 SNP Silent 10 101601847 C G 29 52 BRCA TCGA-A2-A25A DNMBP SNP Nonsense_Mutation 10 101637038 G T 45 70 BRCA TCGA-A2-A25A C10orf76 SNP Missense_Mutation 10 103771512 G T 47 97 BRCA TCGA-A2-A25A OGDHL SNP Missense_Mutation 10 50954843 G T 42 100 BRCA TCGA-A2-A25A CCAR1 SNP Missense_Mutation 10 70520826 G T 36 77 BRCA TCGA-A2-A25A CYP26A1 SNP Missense_Mutation 10 94836960 T A 55 92 BRCA TCGA-A2-A25A MCAM SNP Silent 11 119182249 G T 45 49 BRCA TCGA-A2-A25A OR8B3 SNP Missense_Mutation 11 124266647 T C 51 51 BRCA TCGA-A2-A25A B4GALNT4 SNP Missense_Mutation 11 380848 G T 47 95 BRCA TCGA-A2-A25A OR8K1 SNP Missense_Mutation 11 56113597 G A 43 36 BRCA TCGA-A2-A25A DNHD1 SNP Missense_Mutation 11 6570103 C T 29 61 BRCA TCGA-A2-A25A DNAH10 SNP Missense_Mutation 12 124298415 G T 41 100 BRCA TCGA-A2-A25A SPRYD3 SNP Missense_Mutation 12 53461956 G T 35 59 BRCA TCGA-A2-A25A KIF5A SNP Missense_Mutation 12 57975311 C G 32 44 BRCA TCGA-A2-A25A ATP2B1 SNP Missense_Mutation 12 90010583 G T 35 100 BRCA TCGA-A2-A25A MPHOSPH8 SNP Missense_Mutation 13 20235848 G T 41 99 BRCA TCGA-A2-A25A FREM2 SNP Missense_Mutation 13 39454659 G A 38 73 BRCA TCGA-A2-A25A EML1 SNP Missense_Mutation 14 100364613 G T 36 100 BRCA TCGA-A2-A25A PIAS1 SNP Missense_Mutation 15 68438931 G T 40 97 BRCA TCGA-A2-A25A PIAS1 SNP Missense_Mutation 15 68438944 G T 37 97 BRCA TCGA-A2-A25A RNF40 SNP Missense_Mutation 16 30779332 G T 42 61 BRCA TCGA-A2-A25A CDH1 SNP Missense_Mutation 16 68862107 G A 39 95 BRCA TCGA-A2-A25A USP7 SNP Silent 16 8988471 G T 42 55 BRCA TCGA-A2-A25A SMYD4 SNP Silent 17 1703986 G T 47 49 BRCA TCGA-A2-A25A ULK2 SNP Missense_Mutation 17 19728468 G T 33 83 BRCA TCGA-A2-A25A SUPT6H SNP Missense_Mutation 17 27002030 G T 37 98 BRCA TCGA-A2-A25A FLOT2 SNP Missense_Mutation 17 27208299 C T 32 100 BRCA TCGA-A2-A25A CCL14 SNP Missense_Mutation 17 34312816 G T 39 47 BRCA TCGA-A2-A25A KPNB1 SNP Missense_Mutation 17 45750492 G T 47 51 BRCA TCGA-A2-A25A GH2 SNP Missense_Mutation 17 61957710 G T 39 72 BRCA TCGA-A2-A25A RBBP8 SNP Missense_Mutation 18 20596862 G T 43 82 BRCA TCGA-A2-A25A OSBPL1A SNP Silent 18 21761133 G T 33 30 BRCA TCGA-A2-A25A ZNF791 SNP Missense_Mutation 19 12738936 G T 36 54 BRCA TCGA-A2-A25A TMEM38A SNP Splice_Site 19 16798954 G T 35 90 BRCA TCGA-A2-A25A RAB3A SNP Missense_Mutation 19 18309636 G A 45 96 BRCA TCGA-A2-A25A GATAD2A SNP Nonsense_Mutation 19 19603408 C T 19 73 BRCA TCGA-A2-A25A TMPRSS9 SNP Missense_Mutation 19 2415770 C T 30 61 BRCA TCGA-A2-A25A ZNF554 SNP Missense_Mutation 19 2834252 G T 34 47 BRCA TCGA-A2-A25A MAG SNP Missense_Mutation 19 35793545 G A 33 66 BRCA TCGA-A2-A25A DMPK SNP Missense_Mutation 19 46283223 C T 32 51 BRCA TCGA-A2-A25A RRM2 SNP Missense_Mutation 2 10269209 G A 45 100 BRCA TCGA-A2-A25A HDAC4 SNP Missense_Mutation 2 240016733 G T 37 38 BRCA TCGA-A2-A25A ASXL2 SNP Missense_Mutation 2 25978922 G A 45 78 BRCA TCGA-A2-A25A WDPCP SNP Silent 2 63631316 G T 35 52 BRCA TCGA-A2-A25A NINL SNP Silent 20 25498423 G T 42 49 BRCA TCGA-A2-A25A TM9SF4 SNP Silent 20 30729674 G T 42 61 BRCA TCGA-A2-A25A ZNFX1 SNP Silent 20 47865238 G A 38 40 BRCA TCGA-A2-A25A SLCO4A1 SNP Missense_Mutation 20 61297777 G T 42 94 BRCA TCGA-A2-A25A CHEK2 SNP Missense_Mutation 22 29095912 C G 32 92 BRCA TCGA-A2-A25A POLDIP3 SNP Silent 22 42992321 G T 47 57 BRCA TCGA-A2-A25A GLRA4 SNP Missense_Mutation 23 102968564 C T 26 94 BRCA TCGA-A2-A25A AIFM1 SNP Missense_Mutation 23 129263972 G C 33 70 BRCA TCGA-A2-A25A MED12 SNP Missense_Mutation 23 70345962 C G 30 62 BRCA TCGA-A2-A25A HMGN5 SNP Silent 23 80371790 G T 43 64 BRCA TCGA-A2-A25A ARGFX SNP Missense_Mutation 3 121305394 G C 33 57 BRCA TCGA-A2-A25A PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-A2-A25A HHATL SNP Silent 3 42740389 G T 34 68 BRCA TCGA-A2-A25A DOCK3 SNP Silent 3 51417596 G T 47 60 BRCA TCGA-A2-A25A TEX264 SNP Missense_Mutation 3 51718482 G T 35 47 BRCA TCGA-A2-A25A ACTR8 SNP Missense_Mutation 3 53908306 G T 47 85 BRCA TCGA-A2-A25A MANBA SNP Missense_Mutation 4 103578858 G T 41 99 BRCA TCGA-A2-A25A RAPGEF2 SNP Missense_Mutation 4 160235812 G T 37 100 BRCA TCGA-A2-A25A ADAMTS3 SNP Missense_Mutation 4 73148964 G T 33 77 BRCA TCGA-A2-A25A SORCS2 SNP Missense_Mutation 4 7714483 G T 38 89 BRCA TCGA-A2-A25A SPOCK1 SNP Splice_site 5 136328289 G T 42 58 BRCA TCGA-A2-A25A BRD8 SNP Missense_Mutation 5 137503631 G T 34 71 BRCA TCGA-A2-A25A PCDHB11 SNP Missense_Mutation 5 140580938 G A 40 76 BRCA TCGA-A2-A25A PCDH1 SNP Missense_Mutation 5 141244076 T C 58 89 BRCA TCGA-A2-A25A OSMR SNP Missense_Mutation 5 38933388 G T 33 66 BRCA TCGA-A2-A25A CDC40 SNP Splice_site 6 110534290 G T 42 84 BRCA TCGA-A2-A25A ASF1A SNP Missense_Mutation 6 119226836 G T 41 68 BRCA TCGA-A2-A25A PTPRK SNP Missense_Mutation 6 128294905 G T 35 100 BRCA TCGA-A2-A25A MAP3K4 SNP Nonsense_Mutation 6 161470388 G T 33 99 BRCA TCGA-A2-A25A AGPAT4 SNP Silent 6 161570318 G A 45 85 BRCA TCGA-A2-A25A DCDC2 SNP Silent 6 24174967 G T 39 32 BRCA TCGA-A2-A25A HCRTR2 SNP Nonsense_Mutation 6 55147109 C T 19 53 BRCA TCGA-A2-A25A KHDRBS2 SNP Missense_Mutation 6 62604590 G T 42 91 BRCA TCGA-A2-A25A FHL5 SNP Missense_Mutation 6 97058632 G T 36 56 BRCA TCGA-A2-A25A OR6B1 SNP Silent 7 143701740 C G 24 50 BRCA TCGA-A2-A25A WDR67 SNP Missense_Mutation 8 124154635 G T 35 50 BRCA TCGA-A2-A25A KIAA1967 SNP Silent 8 22464825 C G 32 58 BRCA TCGA-A2-A25A ZFHX4 SNP Silent 8 77765961 G T 43 51 BRCA TCGA-A2-A25A TMEM67 SNP Missense_Mutation 8 94770765 G T 46 68 BRCA TCGA-A2-A25A CDK5RAP2 SNP Missense_Mutation 9 123171418 G T 47 51 BRCA TCGA-A2-A25A C9orf50 SNP Missense_Mutation 9 132381848 G T 42 45 BRCA TCGA-A2-A25A C9orf37 SNP Nonsense_Mutation 9 140510463 C T 30 50 BRCA TCGA-A2-A25B MAN1A2 SNP Silent 1 118039456 C T 20 83 BRCA TCGA-A2-A25B PRAMEF11 SNP Missense_Mutation 1 12888424 A G 5 44 BRCA TCGA-A2-A25B TARS2 SNP Missense_Mutation 1 150469022 C T 30 98 BRCA TCGA-A2-A25B RYR2 SNP Missense_Mutation 1 237580371 G A 38 85 BRCA TCGA-A2-A25B RPA2 SNP Missense_Mutation 1 28233517 C A 24 58 BRCA TCGA-A2-A25B HCRTR1 SNP Silent 1 32089153 G A 41 51 BRCA TCGA-A2-A25B KIAA1217 SNP Missense_Mutation 10 24833030 G T 41 97 BRCA TCGA-A2-A25B FAM13C SNP Missense_Mutation 10 61023859 C G 19 94 BRCA TCGA-A2-A25B GATA3 DEL Frame_Shift_Del 10 8115852 AT - 8 77 BRCA TCGA-A2-A25B CARD17 SNP Missense_Mutation 11 104971500 A T 10 63 BRCA TCGA-A2-A25B SORL1 SNP Silent 11 121458742 G A 38 11 BRCA TCGA-A2-A25B FOLH1 SNP Splice_Site 11 49170190 C G 18 84 BRCA TCGA-A2-A25B DTX4 SNP Missense_Mutation 11 58949292 G A 37 82 BRCA TCGA-A2-A25B ODZ4 SNP Missense_Mutation 11 78381001 A G 4 90 BRCA TCGA-A2-A25B ERC1 SNP Silent 12 1137553 T C 52 51 BRCA TCGA-A2-A25B TMED2 SNP Missense_Mutation 12 124074976 G A 39 100 BRCA TCGA-A2-A25B KIAA0528 SNP Nonsense_Mutation 12 22627752 G C 45 97 BRCA TCGA-A2-A25B MLL2 SNP Missense_Mutation 12 49444310 G A 41 59 BRCA TCGA-A2-A25B GAPDH SNP Missense_Mutation 12 6646882 G C 44 98 BRCA TCGA-A2-A25B FRY SNP Silent 13 32863812 C T 28 88 BRCA TCGA-A2-A25B TBC1D4 SNP Missense_Mutation 13 75936460 C T 22 48 BRCA TCGA-A2-A25B OR4N5 SNP Silent 14 20612251 C G 24 54 BRCA TCGA-A2-A25B PLA2G4D SNP Missense_Mutation 15 42379619 G T 35 67 BRCA TCGA-A2-A25B TMEM87A SNP Missense_Mutation 15 42531871 C T 29 96 BRCA TCGA-A2-A25B TMOD3 SNP Missense_Mutation 15 52181319 G A 44 74 BRCA TCGA-A2-A25B ATP2A1 SNP Missense_Mutation 16 28899040 G A 37 98 BRCA TCGA-A2-A25B HYDIN SNP Missense_Mutation 16 70954761 C A 22 53 BRCA TCGA-A2-A25B PRPF8 SNP Silent 17 1582137 C T 17 51 BRCA TCGA-A2-A25B C17orf97 SNP Missense_Mutation 17 263526 G A 37 41 BRCA TCGA-A2-A25B SLFN12L SNP Nonsense_Mutation 17 33802086 G T 36 51 BRCA TCGA-A2-A25B ABCA9 SNP Missense_Mutation 17 66979929 T C 62 73 BRCA TCGA-A2-A25B CHST9 SNP Missense_Mutation 18 24497140 C A 28 50 BRCA TCGA-A2-A25B KIAA1328 SNP Silent 18 34646885 A C 8 48 BRCA TCGA-A2-A25B SMAD4 SNP Missense_Mutation 18 48575132 T G 53 90 BRCA TCGA-A2-A25B DNMT1 SNP Silent 19 10291057 G A 47 51 BRCA TCGA-A2-A25B DOCK6 SNP Silent 19 11313275 G A 33 49 BRCA TCGA-A2-A25B PSG2 SNP Missense_Mutation 19 43585335 G A 47 55 BRCA TCGA-A2-A25B SHISA7 SNP Missense_Mutation 19 55952073 C T 31 70 BRCA TCGA-A2-A25B ZNF544 SNP Missense_Mutation 19 58773419 A G 13 44 BRCA TCGA-A2-A25B NPAS2 SNP Missense_Mutation 2 101594255 G C 47 69 BRCA TCGA-A2-A25B MGAT5 SNP Silent 2 135206253 C T 21 58 BRCA TCGA-A2-A25B FAP SNP Missense_Mutation 2 163083083 A T 4 61 BRCA TCGA-A2-A25B TTN SNP Missense_Mutation 2 179408789 C A 26 89 BRCA TCGA-A2-A25B SSFA2 SNP Missense_Mutation 2 182766619 C A 17 68 BRCA TCGA-A2-A25B DUSP19 SNP Missense_Mutation 2 183943850 C A 18 77 BRCA TCGA-A2-A25B APOB SNP Missense_Mutation 2 21232258 A C 4 50 BRCA TCGA-A2-A25B AGBL5 SNP Missense_Mutation 2 27275875 G C 35 95 BRCA TCGA-A2-A25B PRKCE SNP Splice_Site 2 46313346 G A 35 100 BRCA TCGA-A2-A25B NRK SNP Missense_Mutation 23 105168991 C A 18 46 BRCA TCGA-A2-A25B SMARCA1 SNP Missense_Mutation 23 128641922 G T 33 99 BRCA TCGA-A2-A25B RAB33A SNP Missense_Mutation 23 129318289 C A 19 66 BRCA TCGA-A2-A25B FHL1 SNP Silent 23 135288738 G A 39 36 BRCA TCGA-A2-A25B ATP2B3 SNP Missense_Mutation 23 152835130 C A 24 60 BRCA TCGA-A2-A25B SLC9C1 SNP Missense_Mutation 3 111983118 A T 16 51 BRCA TCGA-A2-A25B ARHGAP31 SNP Missense_Mutation 3 119134300 G A 38 98 BRCA TCGA-A2-A25B KALRN SNP Silent 3 124174098 G A 39 47 BRCA TCGA-A2-A25B COL6A6 SNP Missense_Mutation 3 130380981 C G 29 73 BRCA TCGA-A2-A25B EPHB1 SNP Silent 3 134884889 C A 24 48 BRCA TCGA-A2-A25B SLC22A14 SNP Missense_Mutation 3 38347782 T A 56 65 BRCA TCGA-A2-A25B UGDH SNP Missense_Mutation 4 39505533 C T 30 86 BRCA TCGA-A2-A25B NUP54 DEL Frame_Shift_Del 4 77038880 AA - 5 70 BRCA TCGA-A2-A25B DNAH5 SNP Missense_Mutation 5 13700790 A T 1 81 BRCA TCGA-A2-A25B PCDHGA1 SNP Missense_Mutation 5 140712271 G A 37 91 BRCA TCGA-A2-A25B RBM27 SNP Missense_Mutation 5 145651050 C T 25 80 BRCA TCGA-A2-A25B ENPP1 SNP Missense_Mutation 6 132206110 A G 16 60 BRCA TCGA-A2-A25B HIST1H2BJ SNP Missense_Mutation 6 27100352 T G 51 83 BRCA TCGA-A2-A25B ABCA13 SNP Silent 7 48314636 C T 31 49 BRCA TCGA-A2-A25B CRCP SNP Nonsense_Mutation 7 65579837 G T 37 53 BRCA TCGA-A2-A25B ASNS SNP Missense_Mutation 7 97481770 G A 46 61 BRCA TCGA-A2-A25B PRSS55 SNP Silent 8 10383206 A G 11 34 BRCA TCGA-A2-A25B BLK SNP Missense_Mutation 8 11412989 G T 41 95 BRCA TCGA-A2-A25B SLC30A8 SNP Silent 8 118165274 G C 48 68 BRCA TCGA-A2-A25B TG SNP Silent 8 133910025 G A 47 53 BRCA TCGA-A2-A25B TG SNP Missense_Mutation 8 133953777 G C 35 60 BRCA TCGA-A2-A25B WISP1 SNP Silent 8 134237778 C A 26 57 BRCA TCGA-A2-A25B PSD3 SNP Silent 8 18457916 G T 35 50 BRCA TCGA-A2-A25B PMP2 SNP Missense_Mutation 8 82355662 C A 18 57 BRCA TCGA-A2-A25B RIPK2 SNP Silent 8 90777697 C T 32 55 BRCA TCGA-A2-A25B PDCL SNP Missense_Mutation 9 125588988 G T 47 55 BRCA TCGA-A2-A25B CRAT SNP Silent 9 131860611 G A 44 47 BRCA TCGA-A2-A25B GLDC INS Frame_Shift_Ins 9 6533047 - GG 51 29 BRCA TCGA-A2-A25C HMCN1 SNP Splice_Site 1 185962313 G C 33 99 BRCA TCGA-A2-A25C ENAH SNP Silent 1 225707102 C T 26 43 BRCA TCGA-A2-A25C OR8A1 SNP Missense_Mutation 11 124440230 G A 46 65 BRCA TCGA-A2-A25C DAGLA SNP Missense_Mutation 11 61511150 G A 39 93 BRCA TCGA-A2-A25C RNF6 SNP Missense_Mutation 13 26788550 C T 22 95 BRCA TCGA-A2-A25C PCNX SNP Missense_Mutation 14 71445273 C A 28 97 BRCA TCGA-A2-A25C KCNK13 SNP Missense_Mutation 14 90650606 G T 34 71 BRCA TCGA-A2-A25C COL1A1 SNP Silent 17 48263001 G T 39 48 BRCA TCGA-A2-A25C ZNF473 SNP Silent 19 50548576 T C 57 46 BRCA TCGA-A2-A25C TTN SNP Silent 2 179446724 G A 39 34 BRCA TCGA-A2-A25C TTN SNP Missense_Mutation 2 179465819 C A 32 55 BRCA TCGA-A2-A25C NCAM2 SNP Missense_Mutation 21 22881175 C T 19 80 BRCA TCGA-A2-A25C WDR4 SNP Missense_Mutation 21 44282454 C A 32 63 BRCA TCGA-A2-A25C CP SNP Missense_Mutation 3 148930428 C A 32 56 BRCA TCGA-A2-A25C PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A2-A25C CPE SNP Missense_Mutation 4 166403460 C T 32 97 BRCA TCGA-A2-A25C MCTP1 SNP Missense_Mutation 5 94289001 T C 57 53 BRCA TCGA-A2-A25C AKAP7 SNP Missense_Mutation 6 131602771 G A 41 85 BRCA TCGA-A2-A25C MED23 SNP Nonsense_Mutation 6 131921249 G A 45 100 BRCA TCGA-A2-A25C EEF1A1 SNP Missense_Mutation 6 74229730 T C 51 88 BRCA TCGA-A2-A25C PLXNA4 SNP Missense_Mutation 7 132169630 T A 55 51 BRCA TCGA-A2-A25C KIAA1147 SNP Silent 7 141365078 G A 46 52 BRCA TCGA-A2-A25C KCNK9 SNP Missense_Mutation 8 140715207 G A 41 93 BRCA TCGA-A2-A25C OR1J1 SNP Missense_Mutation 9 125240172 A G 2 85 BRCA TCGA-A2-A25D IGSF3 SNP Silent 1 117131545 G A 39 44 BRCA TCGA-A2-A25D DARC SNP Missense_Mutation 1 159175653 G T 46 76 BRCA TCGA-A2-A25D UBR4 SNP Silent 1 19518987 C A 22 54 BRCA TCGA-A2-A25D LBR SNP Missense_Mutation 1 225609856 A C 12 52 BRCA TCGA-A2-A25D C1QA SNP Missense_Mutation 1 22965464 G A 42 98 BRCA TCGA-A2-A25D SRRM1 SNP Missense_Mutation 1 24972547 G A 33 100 BRCA TCGA-A2-A25D ABCC8 SNP Silent 11 17434216 G A 33 65 BRCA TCGA-A2-A25D OR2AG2 SNP Silent 11 6789589 G A 40 50 BRCA TCGA-A2-A25D IQSEC3 SNP Missense_Mutation 12 266274 G A 43 94 BRCA TCGA-A2-A25D ITPR2 SNP Missense_Mutation 12 26755633 T C 64 64 BRCA TCGA-A2-A25D SLC38A2 SNP Silent 12 46754960 C T 29 59 BRCA TCGA-A2-A25D ESPL1 SNP Silent 12 53670885 C A 30 53 BRCA TCGA-A2-A25D MYH6 SNP Nonsense_Mutation 14 23858706 G A 46 83 BRCA TCGA-A2-A25D DDX24 SNP Silent 14 94524189 G T 41 49 BRCA TCGA-A2-A25D ZFP106 SNP Silent 15 42743987 G A 34 65 BRCA TCGA-A2-A25D SEPT1 SNP Silent 16 30393472 G C 45 54 BRCA TCGA-A2-A25D SEPT12 SNP Missense_Mutation 16 4835875 C T 22 82 BRCA TCGA-A2-A25D MMP28 SNP Missense_Mutation 17 34105965 C A 22 77 BRCA TCGA-A2-A25D FBF1 SNP Missense_Mutation 17 73924235 T C 62 73 BRCA TCGA-A2-A25D ENPP7 SNP Missense_Mutation 17 77705092 C A 25 96 BRCA TCGA-A2-A25D APCDD1 SNP Nonsense_Mutation 18 10487617 C A 27 58 BRCA TCGA-A2-A25D PIEZO2 SNP Silent 18 10761023 C T 23 45 BRCA TCGA-A2-A25D TRAPPC8 SNP Silent 18 29480941 T C 51 37 BRCA TCGA-A2-A25D LAMA1 SNP Missense_Mutation 18 7042194 G A 41 95 BRCA TCGA-A2-A25D LPPR2 SNP Silent 19 11470279 C T 22 49 BRCA TCGA-A2-A25D ZNF780A SNP Missense_Mutation 19 40581727 A C 4 44 BRCA TCGA-A2-A25D MUC16 SNP Missense_Mutation 19 9060763 T G 59 46 BRCA TCGA-A2-A25D CWC22 SNP Splice_site 2 180858042 T G 56 53 BRCA TCGA-A2-A25D COL6A3 SNP Missense_Mutation 2 238277616 G A 42 45 BRCA TCGA-A2-A25D GTF3C2 SNP Missense_Mutation 2 27551716 C T 19 73 BRCA TCGA-A2-A25D LTBP1 SNP Silent 2 33585833 G T 39 25 BRCA TCGA-A2-A25D PROKR1 SNP Missense_Mutation 2 68882542 C T 20 80 BRCA TCGA-A2-A25D ALMS1 SNP Missense_Mutation 2 73635817 C G 32 70 BRCA TCGA-A2-A25D GZF1 SNP Missense_Mutation 20 23345750 C A 20 67 BRCA TCGA-A2-A25D KIAA1755 SNP Missense_Mutation 20 36841476 A G 11 70 BRCA TCGA-A2-A25D SEMG2 SNP Missense_Mutation 20 43851070 A T 4 51 BRCA TCGA-A2-A25D ATR SNP Splice_Site 3 142234359 T C 55 93 BRCA TCGA-A2-A25D PLD1 SNP Missense_Mutation 3 171406629 T C 49 78 BRCA TCGA-A2-A25D PIK3CA DEL In_Frame_Del 3 178916938 GAA - 45 97 BRCA TCGA-A2-A25D OR5H1 SNP Missense_Mutation 3 97852403 A G 16 44 BRCA TCGA-A2-A25D GUCY1B3 SNP Splice_Site 4 156724917 G A 44 88 BRCA TCGA-A2-A25D ATP10D SNP Missense_Mutation 4 47560135 G C 41 84 BRCA TCGA-A2-A25D PSD2 SNP Missense_Mutation 5 139193009 G A 39 91 BRCA TCGA-A2-A25D CYSTM1 SNP Missense_Mutation 5 139574060 G C 33 79 BRCA TCGA-A2-A25D PCDHA12 SNP Missense_Mutation 5 140255068 T C 50 50 BRCA TCGA-A2-A25D MNF1 SNP Missense_Mutation 6 33679361 C A 18 96 BRCA TCGA-A2-A25D PTCHD4 SNP Silent 6 47846156 C T 19 52 BRCA TCGA-A2-A25D ELOVL5 SNP Splice_site 6 53133926 C T 29 94 BRCA TCGA-A2-A25D PKHD1L1 INS Frame_Shift_Ins 8 110471843 - A 45 92 BRCA TCGA-A2-A25D MYBL1 SNP Splice_Site 8 67509563 A T 6 91 BRCA TCGA-A2-A25D ADAMTS13 INS Frame_Shift_Ins 9 136324188 - A 29 46 BRCA TCGA-A2-A25D DDX58 SNP Missense_Mutation 9 32459494 G A 45 51 BRCA TCGA-A2-A25E SLC16A1 SNP Missense_Mutation 1 113456731 C T 19 55 BRCA TCGA-A2-A25E ATP1A4 SNP Missense_Mutation 1 160134150 C G 28 94 BRCA TCGA-A2-A25E TNFSF4 SNP Splice_site 1 173157660 C T 23 44 BRCA TCGA-A2-A25E LIN9 SNP Silent 1 226426761 G T 38 61 BRCA TCGA-A2-A25E LYST SNP Missense_Mutation 1 235891402 T C 61 90 BRCA TCGA-A2-A25E CEP85 SNP Missense_Mutation 1 26582252 T G 59 74 BRCA TCGA-A2-A25E MAP3K6 SNP Nonsense_Mutation 1 27682955 G C 44 73 BRCA TCGA-A2-A25E USP1 SNP Silent 1 62905637 T G 53 51 BRCA TCGA-A2-A25E ENTPD7 SNP Missense_Mutation 10 101458349 C T 26 95 BRCA TCGA-A2-A25E ITIH2 SNP Missense_Mutation 10 7773943 T C 60 89 BRCA TCGA-A2-A25E MLL INS Frame_Shift_Ins 11 118344574 - TAAA 33 82 BRCA TCGA-A2-A25E TMEM86A SNP Missense_Mutation 11 18723330 G C 39 54 BRCA TCGA-A2-A25E TTC17 SNP Silent 11 43411360 C T 25 77 BRCA TCGA-A2-A25E KBTBD4 INS Frame_Shift_Ins 11 47599443 - A 36 65 BRCA TCGA-A2-A25E SLC3A2 SNP Silent 11 62652118 C T 32 51 BRCA TCGA-A2-A25E CHPT1 SNP Missense_Mutation 12 102117039 A C 1 69 BRCA TCGA-A2-A25E SART3 SNP Missense_Mutation 12 108920132 G A 44 83 BRCA TCGA-A2-A25E CCDC60 SNP Silent 12 119966483 G A 35 64 BRCA TCGA-A2-A25E ERC1 SNP Missense_Mutation 12 1517405 C G 22 97 BRCA TCGA-A2-A25E LNX2 SNP Missense_Mutation 13 28134091 G T 34 77 BRCA TCGA-A2-A25E TTLL5 DEL In_Frame_Del 14 76246009 AAC - 9 57 BRCA TCGA-A2-A25E ITGAX SNP Silent 16 31384615 A G 3 33 BRCA TCGA-A2-A25E ULK2 SNP Missense_Mutation 17 19699025 C T 23 96 BRCA TCGA-A2-A25E ABCA10 SNP Nonsense_Mutation 17 67190107 G A 45 52 BRCA TCGA-A2-A25E RNASEK SNP Missense_Mutation 17 6917541 T C 54 62 BRCA TCGA-A2-A25E RHBDF2 SNP Missense_Mutation 17 74470176 T C 51 50 BRCA TCGA-A2-A25E ROCK1 SNP Missense_Mutation 18 18586456 G C 35 62 BRCA TCGA-A2-A25E ONECUT2 INS In_Frame_Ins 18 55103476 - CAC 38 43 BRCA TCGA-A2-A25E ZNF546 SNP Missense_Mutation 19 40520249 G A 45 50 BRCA TCGA-A2-A25E GSK3A SNP Missense_Mutation 19 42744148 G C 36 54 BRCA TCGA-A2-A25E GLI2 SNP Missense_Mutation 2 121685040 C G 19 47 BRCA TCGA-A2-A25E WDR33 SNP Missense_Mutation 2 128526530 G A 42 98 BRCA TCGA-A2-A25E FIGLA SNP Missense_Mutation 2 71012744 T C 53 68 BRCA TCGA-A2-A25E NSFL1C SNP Missense_Mutation 20 1435746 G C 48 97 BRCA TCGA-A2-A25E ATP9A SNP Missense_Mutation 20 50238636 G T 47 97 BRCA TCGA-A2-A25E WWC3 SNP Missense_Mutation 23 10102560 C G 31 83 BRCA TCGA-A2-A25E PHKA2 SNP Splice_site 23 18942252 G T 46 60 BRCA TCGA-A2-A25E AWAT2 SNP Missense_Mutation 23 69263413 C A 32 87 BRCA TCGA-A2-A25E BRWD3 SNP Silent 23 79999555 A G 4 60 BRCA TCGA-A2-A25E MAP3K13 SNP Splice_Site 3 185165736 G A 44 100 BRCA TCGA-A2-A25E TCTEX1D2 DEL In_Frame_Del 3 196044967 CTCAGC - 32 56 BRCA TCGA-A2-A25E CX3CR1 DEL Frame_Shift_Del 3 39306996 TC - 62 45 BRCA TCGA-A2-A25E RBM46 SNP Missense_Mutation 4 155719029 A T 16 93 BRCA TCGA-A2-A25E UGT2B7 SNP Missense_Mutation 4 69973931 G C 45 73 BRCA TCGA-A2-A25E IQGAP2 SNP Missense_Mutation 5 75970488 C T 32 69 BRCA TCGA-A2-A25E ATXN1 SNP Missense_Mutation 6 16326909 G T 43 79 BRCA TCGA-A2-A25E KIAA0319 SNP Missense_Mutation 6 24559272 C G 25 62 BRCA TCGA-A2-A25E HIST1H2BE INS In_Frame_Ins 6 26184396 - TGG 54 74 BRCA TCGA-A2-A25E HIST1H2AI SNP Missense_Mutation 6 27776320 C A 17 69 BRCA TCGA-A2-A25E GPR116 SNP Silent 6 46851971 G A 38 43 BRCA TCGA-A2-A25E MOGAT3 SNP Missense_Mutation 7 100842014 G C 44 72 BRCA TCGA-A2-A25E GIMAP6 SNP Missense_Mutation 7 150325382 G T 43 49 BRCA TCGA-A2-A25E ZNF16 SNP Missense_Mutation 8 146157623 C T 29 50 BRCA TCGA-A2-A25E C5 SNP Splice_site 9 123789552 T A 50 53 BRCA TCGA-A2-A25E RFK SNP Missense_Mutation 9 79009015 T C 51 72 BRCA TCGA-A2-A25E NTRK2 SNP Nonsense_Mutation 9 87563383 A T 9 91 BRCA TCGA-A2-A25F KLK5 SNP Silent 19 51452257 G A 36 54 BRCA TCGA-A7-A0CD C1orf53 SNP Silent 1 197875018 G A 40 52 BRCA TCGA-A7-A0CD ZC3H12A DEL Frame_Shift_Del 1 37941282 C - 30 70 BRCA TCGA-A7-A0CD LPHN2 SNP Missense_Mutation 1 82456779 C A 30 84 BRCA TCGA-A7-A0CD PRKRIR SNP Missense_Mutation 11 76062581 T A 62 89 BRCA TCGA-A7-A0CD NLRP10 SNP Missense_Mutation 11 7982638 G A 37 50 BRCA TCGA-A7-A0CD TAS2R13 SNP Translation_Start_Site 12 11062036 G A 40 40 BRCA TCGA-A7-A0CD FOXM1 SNP Silent 12 2977870 C T 28 51 BRCA TCGA-A7-A0CD GPR132 SNP Silent 14 105517442 G A 39 0 BRCA TCGA-A7-A0CD CERS3 SNP Silent 15 101009639 C T 17 53 BRCA TCGA-A7-A0CD MYH3 SNP Silent 17 10543517 C T 28 53 BRCA TCGA-A7-A0CD ORMDL3 SNP Missense_Mutation 17 38079470 G A 44 100 BRCA TCGA-A7-A0CD SCN4A SNP Missense_Mutation 17 62034875 G A 38 56 BRCA TCGA-A7-A0CD COG1 SNP Missense_Mutation 17 71199175 G A 33 81 BRCA TCGA-A7-A0CD NEURL4 SNP Missense_Mutation 17 7227492 G A 39 99 BRCA TCGA-A7-A0CD POLR2A SNP Missense_Mutation 17 7412461 A G 10 87 BRCA TCGA-A7-A0CD ZNF208 SNP Silent 19 22157191 G T 43 33 BRCA TCGA-A7-A0CD ASXL1 SNP Silent 20 31023224 G T 37 41 BRCA TCGA-A7-A0CD CHD6 SNP Missense_Mutation 20 40050464 G C 43 100 BRCA TCGA-A7-A0CD PHKA2 SNP Splice_site 23 18954268 C A 18 85 BRCA TCGA-A7-A0CD POLA1 SNP Missense_Mutation 23 24859809 A T 3 57 BRCA TCGA-A7-A0CD CD200R1 SNP Missense_Mutation 3 112648015 C G 24 58 BRCA TCGA-A7-A0CD PLXNA1 DEL Frame_Shift_Del 3 126724942 CT - 20 80 BRCA TCGA-A7-A0CD SST SNP Missense_Mutation 3 187388034 C T 19 57 BRCA TCGA-A7-A0CD AFF4 SNP Missense_Mutation 5 132232866 C T 20 87 BRCA TCGA-A7-A0CD FGF18 SNP Silent 5 170883698 C T 19 46 BRCA TCGA-A7-A0CD NIPBL SNP Missense_Mutation 5 37006526 C T 27 98 BRCA TCGA-A7-A0CD PTCHD4 SNP Missense_Mutation 6 47976376 C T 27 98 BRCA TCGA-A7-A0CD LAMB1 SNP Splice_site 7 107638937 C T 30 100 BRCA TCGA-A7-A0CD CARD11 SNP Silent 7 2983933 G A 40 48 BRCA TCGA-A7-A0CD CPSF4 SNP Missense_Mutation 7 99054076 G A 38 99 BRCA TCGA-A7-A0CE NPPA SNP Missense_Mutation 1 11907684 G C 35 66 BRCA TCGA-A7-A0CE SLC27A3 DEL Frame_Shift_Del 1 153748207 C - 27 49 BRCA TCGA-A7-A0CE TRIM46 SNP Missense_Mutation 1 155152365 G T 39 86 BRCA TCGA-A7-A0CE OR6K6 SNP Missense_Mutation 1 158724637 C G 30 45 BRCA TCGA-A7-A0CE FMO2 SNP Silent 1 171174757 G C 45 43 BRCA TCGA-A7-A0CE KDM5B SNP Missense_Mutation 1 202722080 G C 34 89 BRCA TCGA-A7-A0CE KIF17 SNP Missense_Mutation 1 20991082 G C 33 68 BRCA TCGA-A7-A0CE CDC42BPA SNP Missense_Mutation 1 227198691 T C 49 83 BRCA TCGA-A7-A0CE OR2T3 SNP Silent 1 248637179 T A 53 38 BRCA TCGA-A7-A0CE OR2G6 SNP Silent 1 248685865 G T 47 52 BRCA TCGA-A7-A0CE IPP SNP Missense_Mutation 1 46206690 C A 28 71 BRCA TCGA-A7-A0CE CDC7 SNP Missense_Mutation 1 91989621 G C 33 98 BRCA TCGA-A7-A0CE FAM171A1 SNP Nonsense_Mutation 10 15255345 C A 29 100 BRCA TCGA-A7-A0CE PHLDB1 SNP Missense_Mutation 11 118498674 C T 30 80 BRCA TCGA-A7-A0CE TREH SNP Missense_Mutation 11 118533617 A T 12 55 BRCA TCGA-A7-A0CE OR5T1 SNP Missense_Mutation 11 56043581 T A 54 64 BRCA TCGA-A7-A0CE SMTNL1 SNP Missense_Mutation 11 57314020 C A 26 81 BRCA TCGA-A7-A0CE ZFPL1 SNP Missense_Mutation 11 64853916 C T 19 60 BRCA TCGA-A7-A0CE IGHMBP2 SNP Missense_Mutation 11 68678969 G A 38 24 BRCA TCGA-A7-A0CE NARS2 SNP Silent 11 78189715 C G 17 49 BRCA TCGA-A7-A0CE DRAM1 SNP Missense_Mutation 12 102302031 C G 19 69 BRCA TCGA-A7-A0CE CORO1C SNP Missense_Mutation 12 109051186 G A 46 100 BRCA TCGA-A7-A0CE PIK3C2G SNP Missense_Mutation 12 18644449 T A 56 72 BRCA TCGA-A7-A0CE GRK1 SNP Missense_Mutation 13 114325966 A C 4 73 BRCA TCGA-A7-A0CE ISM2 SNP Missense_Mutation 14 77950743 T A 57 49 BRCA TCGA-A7-A0CE LOC653720 DEL Frame_Shift_Del 15 28947125 G - 34 54 BRCA TCGA-A7-A0CE CKMT1B SNP Silent 15 43891108 T G 59 48 BRCA TCGA-A7-A0CE ITGAX SNP Missense_Mutation 16 31373464 T A 49 39 BRCA TCGA-A7-A0CE SALL1 DEL Frame_Shift_Del 16 51172798 G - 35 77 BRCA TCGA-A7-A0CE SALL1 SNP Silent 16 51172800 C T 26 69 BRCA TCGA-A7-A0CE HYDIN SNP Missense_Mutation 16 71052178 G T 44 57 BRCA TCGA-A7-A0CE GLG1 SNP Missense_Mutation 16 74514249 G C 37 100 BRCA TCGA-A7-A0CE TRPV2 SNP Silent 17 16335509 C A 24 46 BRCA TCGA-A7-A0CE RTN4RL1 SNP Nonsense_Mutation 17 1840864 G C 36 66 BRCA TCGA-A7-A0CE ZZEF1 SNP Missense_Mutation 17 3954156 T C 58 73 BRCA TCGA-A7-A0CE MTMR4 SNP Missense_Mutation 17 56581186 C T 25 68 BRCA TCGA-A7-A0CE ABCA9 SNP Missense_Mutation 17 67020435 A G 12 83 BRCA TCGA-A7-A0CE TP53 SNP Missense_Mutation 17 7578467 T G 59 53 BRCA TCGA-A7-A0CE MAPK4 SNP Missense_Mutation 18 48252421 T A 49 87 BRCA TCGA-A7-A0CE DCC SNP Silent 18 50976883 A T 10 45 BRCA TCGA-A7-A0CE ONECUT2 SNP Missense_Mutation 18 55143875 C T 27 69 BRCA TCGA-A7-A0CE RFX1 SNP Missense_Mutation 19 14076329 C G 25 93 BRCA TCGA-A7-A0CE TSHZ3 SNP Silent 19 31767507 G A 40 53 BRCA TCGA-A7-A0CE FCGBP SNP Missense_Mutation 19 40392553 C T 31 69 BRCA TCGA-A7-A0CE CEACAM5 SNP Missense_Mutation 19 42213656 C G 19 46 BRCA TCGA-A7-A0CE TMIGD2 SNP Missense_Mutation 19 4298081 C A 28 32 BRCA TCGA-A7-A0CE QPCTL SNP Splice_site 19 46196814 G A 35 80 BRCA TCGA-A7-A0CE STRN4 SNP Nonsense_Mutation 19 47240084 G A 39 79 BRCA TCGA-A7-A0CE CCDC9 SNP Missense_Mutation 19 47769965 A T 3 51 BRCA TCGA-A7-A0CE TMEM143 SNP Silent 19 48848500 G A 34 61 BRCA TCGA-A7-A0CE TTN SNP Missense_Mutation 2 179641483 G A 47 100 BRCA TCGA-A7-A0CE FAM117B SNP Missense_Mutation 2 203591010 A G 6 72 BRCA TCGA-A7-A0CE LHCGR SNP Missense_Mutation 2 48958413 T G 56 65 BRCA TCGA-A7-A0CE DYSF SNP Missense_Mutation 2 71743347 T G 55 85 BRCA TCGA-A7-A0CE MGAT4A SNP Silent 2 99279578 A C 9 52 BRCA TCGA-A7-A0CE MAVS SNP Silent 20 3846668 G C 41 51 BRCA TCGA-A7-A0CE CXorf66 SNP Missense_Mutation 23 139038828 A T 8 44 BRCA TCGA-A7-A0CE TBC1D25 SNP Missense_Mutation 23 48418941 C G 22 63 BRCA TCGA-A7-A0CE CYSLTR1 SNP Missense_Mutation 23 77528443 A C 6 52 BRCA TCGA-A7-A0CE SATL1 SNP Missense_Mutation 23 84349172 A T 3 62 BRCA TCGA-A7-A0CE MYH15 SNP Silent 3 108158716 G T 45 50 BRCA TCGA-A7-A0CE HCLS1 SNP Silent 3 121361820 G A 37 52 BRCA TCGA-A7-A0CE BCHE SNP Missense_Mutation 3 165491226 A T 7 81 BRCA TCGA-A7-A0CE NCEH1 SNP Missense_Mutation 3 172428805 G C 42 50 BRCA TCGA-A7-A0CE SPATA16 SNP Silent 3 172835390 T A 59 48 BRCA TCGA-A7-A0CE HTR3E SNP Silent 3 183823579 C A 32 54 BRCA TCGA-A7-A0CE IMPDH2 SNP Missense_Mutation 3 49062341 T C 60 64 BRCA TCGA-A7-A0CE DUSP7 SNP Missense_Mutation 3 52088078 A C 10 91 BRCA TCGA-A7-A0CE SYNPO2 SNP Missense_Mutation 4 119948056 G A 40 46 BRCA TCGA-A7-A0CE LDB2 SNP Missense_Mutation 4 16587601 G T 34 100 BRCA TCGA-A7-A0CE PIGG SNP Missense_Mutation 4 502620 G C 33 53 BRCA TCGA-A7-A0CE RASL11B SNP Missense_Mutation 4 53731706 C G 17 76 BRCA TCGA-A7-A0CE PCDHB2 SNP Missense_Mutation 5 140476160 G A 39 67 BRCA TCGA-A7-A0CE FYB SNP Missense_Mutation 5 39135064 T A 64 83 BRCA TCGA-A7-A0CE VCAN SNP Missense_Mutation 5 82843850 A C 2 62 BRCA TCGA-A7-A0CE MYCT1 SNP Nonsense_Mutation 6 153043116 C T 27 53 BRCA TCGA-A7-A0CE TRERF1 SNP Nonsense_Mutation 6 42224823 A T 5 68 BRCA TCGA-A7-A0CE CDC5L SNP Silent 6 44360503 G A 41 54 BRCA TCGA-A7-A0CE SRRT SNP Missense_Mutation 7 100479395 A T 8 66 BRCA TCGA-A7-A0CE SLC26A3 SNP Missense_Mutation 7 107427288 C A 21 92 BRCA TCGA-A7-A0CE PTPRZ1 SNP Missense_Mutation 7 121695092 C G 32 88 BRCA TCGA-A7-A0CE GCC1 DEL In_Frame_Del 7 127222694 CCAGCTCCTGCCGGTGGAGCTGCTGCAGCCGGG - 30 79 BRCA TCGA-A7-A0CE PRKAG2 SNP Silent 7 151265913 T C 49 50 BRCA TCGA-A7-A0CE ANLN SNP Missense_Mutation 7 36438976 G C 38 77 BRCA TCGA-A7-A0CE HECW1 SNP Missense_Mutation 7 43546850 A T 1 92 BRCA TCGA-A7-A0CE COL28A1 SNP Missense_Mutation 7 7571011 G A 41 56 BRCA TCGA-A7-A0CE CDK14 SNP Missense_Mutation 7 90741993 G A 37 81 BRCA TCGA-A7-A0CE ATP6V1C1 SNP Missense_Mutation 8 104078638 A G 16 91 BRCA TCGA-A7-A0CE ANK1 SNP Nonsense_Mutation 8 41615631 T A 54 53 BRCA TCGA-A7-A0CE TNC SNP Missense_Mutation 9 117798505 C T 27 54 BRCA TCGA-A7-A0CE NOL6 SNP Silent 9 33464968 G A 43 47 BRCA TCGA-A7-A0CG CFH SNP Missense_Mutation 1 196684769 C A 20 40 BRCA TCGA-A7-A0CG MRPL43 INS Frame_Shift_Ins 10 102746498 - C 46 49 BRCA TCGA-A7-A0CG OR13A1 DEL Frame_Shift_Del 10 45799219 C - 17 54 BRCA TCGA-A7-A0CG LIPA SNP Silent 10 90983549 C T 19 27 BRCA TCGA-A7-A0CG DNTT SNP Missense_Mutation 10 98064304 G A 39 61 BRCA TCGA-A7-A0CG LYVE1 SNP Missense_Mutation 11 10590003 C T 19 40 BRCA TCGA-A7-A0CG MADD SNP Missense_Mutation 11 47304060 C T 22 99 BRCA TCGA-A7-A0CG PRKAB1 SNP Missense_Mutation 12 120110208 G A 39 82 BRCA TCGA-A7-A0CG GALNT6 SNP Silent 12 51758021 G A 39 18 BRCA TCGA-A7-A0CG WNK1 SNP Missense_Mutation 12 970284 C T 19 63 BRCA TCGA-A7-A0CG GANC SNP Missense_Mutation 15 42602936 A G 7 55 BRCA TCGA-A7-A0CG FGF7 SNP Missense_Mutation 15 49716681 G C 41 84 BRCA TCGA-A7-A0CG MYO5B SNP Missense_Mutation 18 47431047 G A 39 82 BRCA TCGA-A7-A0CG CYP4F8 SNP Missense_Mutation 19 15729028 T G 62 49 BRCA TCGA-A7-A0CG ZCCHC16 SNP Nonsense_Mutation 23 111698592 C A 25 51 BRCA TCGA-A7-A0CG ATXN3L SNP Missense_Mutation 23 13337012 T A 62 55 BRCA TCGA-A7-A0CG CXorf58 SNP Nonsense_Mutation 23 23934438 C A 29 64 BRCA TCGA-A7-A0CG ARSH SNP Missense_Mutation 23 2928087 C T 23 53 BRCA TCGA-A7-A0CG FAM47C SNP Missense_Mutation 23 37027582 C T 23 50 BRCA TCGA-A7-A0CG PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A7-A0CG ARAP2 SNP Missense_Mutation 4 36212227 A T 2 54 BRCA TCGA-A7-A0CG MARCH11 SNP Silent 5 16091113 G T 47 52 BRCA TCGA-A7-A0CG GUCA1A SNP Missense_Mutation 6 42141470 G A 38 78 BRCA TCGA-A7-A0CG B3GAT2 SNP Missense_Mutation 6 71603840 C T 31 100 BRCA TCGA-A7-A0CG ATP6V0A4 SNP Missense_Mutation 7 138394499 G C 35 72 BRCA TCGA-A7-A0CG EIF3B SNP Silent 7 2409146 C T 32 50 BRCA TCGA-A7-A0CG ANLN SNP Silent 7 36447459 G A 37 41 BRCA TCGA-A7-A0CG PAPOLB SNP Silent 7 4900572 C T 28 64 BRCA TCGA-A7-A0CG KLF4 SNP Missense_Mutation 9 110249348 T G 64 78 BRCA TCGA-A7-A0CH C1orf198 SNP Missense_Mutation 1 230979500 A G 7 53 BRCA TCGA-A7-A0CH RYR2 SNP Silent 1 237947546 C T 19 39 BRCA TCGA-A7-A0CH SORCS3 SNP Missense_Mutation 10 106959855 C G 18 85 BRCA TCGA-A7-A0CH KRTAP5-4 SNP Missense_Mutation 11 1643082 T C 49 53 BRCA TCGA-A7-A0CH MS4A4A SNP Silent 11 60059842 A G 2 51 BRCA TCGA-A7-A0CH TBX3 INS Frame_Shift_Ins 12 115118819 - C 14 51 BRCA TCGA-A7-A0CH WIBG SNP Missense_Mutation 12 56297249 G A 45 95 BRCA TCGA-A7-A0CH RDH16 SNP Missense_Mutation 12 57348901 G A 41 97 BRCA TCGA-A7-A0CH BCL11B SNP Missense_Mutation 14 99697891 G A 39 82 BRCA TCGA-A7-A0CH SLCO3A1 SNP Missense_Mutation 15 92647538 C T 23 82 BRCA TCGA-A7-A0CH SOCS7 SNP Missense_Mutation 17 36523768 G A 47 100 BRCA TCGA-A7-A0CH DSC2 SNP Missense_Mutation 18 28669470 C A 17 55 BRCA TCGA-A7-A0CH LMAN1 DEL In_Frame_Del 18 57000396 TGTGTT - 55 90 BRCA TCGA-A7-A0CH KANK2 SNP Missense_Mutation 19 11289393 A G 11 44 BRCA TCGA-A7-A0CH AFTPH SNP Missense_Mutation 2 64780391 G A 45 69 BRCA TCGA-A7-A0CH STAG2 SNP Nonsense_Mutation 23 123220476 C T 23 53 BRCA TCGA-A7-A0CH DHX36 SNP Missense_Mutation 3 153995455 C T 17 99 BRCA TCGA-A7-A0CH PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-A7-A0CH KLHL24 SNP Missense_Mutation 3 183368623 A C 11 91 BRCA TCGA-A7-A0CH CLNK SNP Missense_Mutation 4 10566399 T C 57 73 BRCA TCGA-A7-A0CH FRYL SNP Missense_Mutation 4 48588708 A G 5 90 BRCA TCGA-A7-A0CH C1QTNF2 SNP Missense_Mutation 5 159776696 C G 18 49 BRCA TCGA-A7-A0CH PELO SNP Missense_Mutation 5 52097628 C A 22 94 BRCA TCGA-A7-A0CH HIST1H2AI SNP Missense_Mutation 6 27776209 C G 17 97 BRCA TCGA-A7-A0CH MDGA1 SNP Silent 6 37622129 C T 22 54 BRCA TCGA-A7-A0CH WDR91 SNP Missense_Mutation 7 134890683 T C 62 89 BRCA TCGA-A7-A0CH ZC3HAV1 SNP Missense_Mutation 7 138738313 A T 8 75 BRCA TCGA-A7-A0CH CSMD1 SNP Silent 8 3263700 G A 40 48 BRCA TCGA-A7-A0CH UNC5D SNP Missense_Mutation 8 35425642 A T 5 65 BRCA TCGA-A7-A0CH LSM1 SNP Silent 8 38033818 G A 39 55 BRCA TCGA-A7-A0CH ABCA1 DEL Frame_Shift_Del 9 107581011 T - 56 93 BRCA TCGA-A7-A0CJ MFN2 SNP Silent 1 12057416 G A 45 60 BRCA TCGA-A7-A0CJ PRDM2 SNP Silent 1 14106177 G A 47 47 BRCA TCGA-A7-A0CJ PADI1 SNP Missense_Mutation 1 17563838 T C 59 85 BRCA TCGA-A7-A0CJ TMCC2 SNP Missense_Mutation 1 205238746 G C 36 60 BRCA TCGA-A7-A0CJ CDK18 SNP Silent 1 205494290 G T 47 74 BRCA TCGA-A7-A0CJ CCDC30 SNP Nonsense_Mutation 1 43032078 C T 31 70 BRCA TCGA-A7-A0CJ ZNF326 SNP Silent 1 90470614 T C 49 58 BRCA TCGA-A7-A0CJ DIP2C SNP Missense_Mutation 10 327200 C T 23 100 BRCA TCGA-A7-A0CJ C11orf9 SNP Silent 11 61533179 C T 23 43 BRCA TCGA-A7-A0CJ OR10A4 SNP Missense_Mutation 11 6898202 T G 63 48 BRCA TCGA-A7-A0CJ ZBTB39 SNP Missense_Mutation 12 57397309 G A 47 79 BRCA TCGA-A7-A0CJ C14orf169 SNP Missense_Mutation 14 73958862 G A 37 99 BRCA TCGA-A7-A0CJ TMEM219 DNP Missense_Mutation 16 29979452 CC AG 26 56 BRCA TCGA-A7-A0CJ MYO15A SNP Silent 17 18044985 C T 22 52 BRCA TCGA-A7-A0CJ TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-A7-A0CJ DSG4 SNP Missense_Mutation 18 28979503 T A 58 71 BRCA TCGA-A7-A0CJ ATP8B1 SNP Missense_Mutation 18 55328529 C A 27 86 BRCA TCGA-A7-A0CJ LSM14A SNP Silent 19 34699901 G A 39 50 BRCA TCGA-A7-A0CJ ACTN4 SNP Missense_Mutation 19 39196735 C G 23 94 BRCA TCGA-A7-A0CJ PRKD2 SNP Missense_Mutation 19 47193909 C T 27 97 BRCA TCGA-A7-A0CJ KIR3DL1 SNP Missense_Mutation 19 55327960 C T 31 60 BRCA TCGA-A7-A0CJ FCAR SNP Missense_Mutation 19 55401036 C T 19 34 BRCA TCGA-A7-A0CJ MUC16 SNP Missense_Mutation 19 9070608 G A 44 33 BRCA TCGA-A7-A0CJ TTN SNP Missense_Mutation 2 179597266 C T 30 86 BRCA TCGA-A7-A0CJ NT5C1B SNP Silent 2 18745290 C G 21 58 BRCA TCGA-A7-A0CJ ZSWIM2 SNP Missense_Mutation 2 187693402 G A 46 37 BRCA TCGA-A7-A0CJ CYP26B1 SNP Silent 2 72362468 G A 38 21 BRCA TCGA-A7-A0CJ C20orf160 SNP Missense_Mutation 20 30605793 G T 34 63 BRCA TCGA-A7-A0CJ FAM83C SNP Missense_Mutation 20 33875143 C T 23 61 BRCA TCGA-A7-A0CJ CHD6 SNP Missense_Mutation 20 40161841 C A 24 58 BRCA TCGA-A7-A0CJ ZFP64 SNP Missense_Mutation 20 50769369 C G 32 63 BRCA TCGA-A7-A0CJ STX16 SNP Splice_Site 20 57242358 G C 34 52 BRCA TCGA-A7-A0CJ SGSM3 SNP Missense_Mutation 22 40804998 G A 38 98 BRCA TCGA-A7-A0CJ ARHGAP36 SNP Missense_Mutation 23 130219619 C A 22 84 BRCA TCGA-A7-A0CJ BCAP31 SNP Missense_Mutation 23 152967514 T A 54 84 BRCA TCGA-A7-A0CJ GPR34 SNP Missense_Mutation 23 41555293 T A 51 79 BRCA TCGA-A7-A0CJ TRO DEL Frame_Shift_Del 23 54955461 C - 28 59 BRCA TCGA-A7-A0CJ CBLB SNP Missense_Mutation 3 105495384 C T 31 100 BRCA TCGA-A7-A0CJ POLQ SNP Splice_site 3 121151152 T G 61 41 BRCA TCGA-A7-A0CJ PIK3CA SNP Missense_Mutation 3 178936095 A G 7 90 BRCA TCGA-A7-A0CJ SGOL1 SNP Missense_Mutation 3 20212538 G A 34 51 BRCA TCGA-A7-A0CJ CADM2 SNP Missense_Mutation 3 85935421 C G 32 73 BRCA TCGA-A7-A0CJ C5orf25 SNP Missense_Mutation 5 175717932 C G 28 53 BRCA TCGA-A7-A0CJ ADAMTS2 SNP Missense_Mutation 5 178555022 T C 58 63 BRCA TCGA-A7-A0CJ DAB2 SNP Missense_Mutation 5 39377160 C T 25 51 BRCA TCGA-A7-A0CJ NBPF22P SNP Silent 5 85578631 C T 17 60 BRCA TCGA-A7-A0CJ TUBE1 SNP Silent 6 112397208 T C 64 56 BRCA TCGA-A7-A0CJ RPS6KA2 SNP Missense_Mutation 6 166864673 C T 30 95 BRCA TCGA-A7-A0CJ RPS6KA2 SNP Missense_Mutation 6 166864676 C T 32 95 BRCA TCGA-A7-A0CJ AGPAT1 SNP Splice_Site 6 32138201 C T 19 92 BRCA TCGA-A7-A0CJ FAM3C SNP Silent 7 121011389 G A 40 54 BRCA TCGA-A7-A0CJ ZNF425 SNP Missense_Mutation 7 148801816 C T 30 74 BRCA TCGA-A7-A0CJ HOXA2 SNP Missense_Mutation 7 27140422 C T 19 83 BRCA TCGA-A7-A0CJ LRP12 SNP Missense_Mutation 8 105503433 G A 40 98 BRCA TCGA-A7-A0CJ SLCO5A1 DEL Frame_Shift_Del 8 70744079 C - 26 100 BRCA TCGA-A7-A0CJ SLCO5A1 DEL Frame_Shift_Del 8 70744434 G - 38 68 BRCA TCGA-A7-A0CJ C9orf131 SNP Missense_Mutation 9 35044467 C A 26 47 BRCA TCGA-A7-A0CJ RCL1 SNP Silent 9 4841274 G T 47 77 BRCA TCGA-A7-A0D9 IL23R SNP Silent 1 67724313 G A 38 40 BRCA TCGA-A7-A0D9 RPL5 SNP Missense_Mutation 1 93300436 C G 25 99 BRCA TCGA-A7-A0D9 RET SNP Missense_Mutation 10 43601945 G A 39 70 BRCA TCGA-A7-A0D9 MAPK8 SNP Nonsense_Mutation 10 49609776 C T 19 71 BRCA TCGA-A7-A0D9 IFIT1B SNP Silent 10 91143442 T C 56 41 BRCA TCGA-A7-A0D9 ERC1 SNP Missense_Mutation 12 1553842 C T 30 97 BRCA TCGA-A7-A0D9 SLCO1B1 SNP Missense_Mutation 12 21329823 T C 59 66 BRCA TCGA-A7-A0D9 KLHL1 SNP Missense_Mutation 13 70514225 C T 27 100 BRCA TCGA-A7-A0D9 LGALS9B SNP Silent 17 20363706 C T 32 54 BRCA TCGA-A7-A0D9 LGALS9B SNP Missense_Mutation 17 20363713 C T 30 63 BRCA TCGA-A7-A0D9 MMD SNP Missense_Mutation 17 53488649 G A 45 96 BRCA TCGA-A7-A0D9 MMD SNP Missense_Mutation 17 53488660 G A 33 96 BRCA TCGA-A7-A0D9 MMD SNP Missense_Mutation 17 53488766 G A 41 96 BRCA TCGA-A7-A0D9 PRR11 SNP Missense_Mutation 17 57262856 T C 56 63 BRCA TCGA-A7-A0D9 ZRANB3 SNP Splice_Site 2 135966549 C A 32 82 BRCA TCGA-A7-A0D9 ARFGEF2 SNP Silent 20 47569307 G A 45 51 BRCA TCGA-A7-A0D9 DIDO1 SNP Missense_Mutation 20 61542268 C T 29 65 BRCA TCGA-A7-A0D9 DIDO1 SNP Silent 20 61542482 C T 29 62 BRCA TCGA-A7-A0D9 CSF2RB SNP Silent 22 37322192 C A 23 52 BRCA TCGA-A7-A0D9 WDR13 DEL Frame_Shift_Del 23 48457777 G - 47 92 BRCA TCGA-A7-A0D9 KDM5C SNP Missense_Mutation 23 53254028 G A 39 79 BRCA TCGA-A7-A0D9 ZPLD1 SNP Splice_site 3 102196287 G A 44 65 BRCA TCGA-A7-A0D9 PIK3CA SNP Missense_Mutation 3 178921552 A C 4 89 BRCA TCGA-A7-A0D9 PCDHB13 SNP Missense_Mutation 5 140595229 C A 21 52 BRCA TCGA-A7-A0D9 LRRN3 SNP Nonsense_Mutation 7 110762901 A T 13 64 BRCA TCGA-A7-A0D9 UBR5 SNP Missense_Mutation 8 103335715 C A 29 62 BRCA TCGA-A7-A0D9 CSMD1 SNP Silent 8 3165943 A T 7 29 BRCA TCGA-A7-A0DA HIAT1 SNP Missense_Mutation 1 100535194 G C 48 75 BRCA TCGA-A7-A0DA KCNA10 SNP Missense_Mutation 1 111060445 T A 54 90 BRCA TCGA-A7-A0DA SPAG17 SNP Missense_Mutation 1 118623811 T C 62 46 BRCA TCGA-A7-A0DA DVL1 SNP Missense_Mutation 1 1273446 T A 57 76 BRCA TCGA-A7-A0DA ZNF687 SNP Missense_Mutation 1 151262465 G T 45 95 BRCA TCGA-A7-A0DA ATP8B2 SNP Splice_site 1 154302873 A C 3 68 BRCA TCGA-A7-A0DA UBQLN4 SNP Missense_Mutation 1 156012608 C G 28 72 BRCA TCGA-A7-A0DA NCSTN SNP Missense_Mutation 1 160314596 C G 20 88 BRCA TCGA-A7-A0DA SELL SNP Missense_Mutation 1 169670813 G T 33 55 BRCA TCGA-A7-A0DA CEP350 SNP Nonsense_Mutation 1 180047635 C G 20 58 BRCA TCGA-A7-A0DA NR5A2 SNP Missense_Mutation 1 200017390 T A 54 93 BRCA TCGA-A7-A0DA PLA2G2C SNP Missense_Mutation 1 20501650 G A 37 36 BRCA TCGA-A7-A0DA LPGAT1 SNP Missense_Mutation 1 211924401 G A 47 92 BRCA TCGA-A7-A0DA SPATA17 SNP Splice_site 1 217842375 G T 44 51 BRCA TCGA-A7-A0DA MARC2 SNP Missense_Mutation 1 220928454 C G 17 33 BRCA TCGA-A7-A0DA HHIPL2 SNP Missense_Mutation 1 222717112 A T 8 49 BRCA TCGA-A7-A0DA COG2 SNP Missense_Mutation 1 230822805 C T 17 69 BRCA TCGA-A7-A0DA LYST SNP Silent 1 235922289 T A 62 57 BRCA TCGA-A7-A0DA FMN2 SNP Silent 1 240601454 C T 29 66 BRCA TCGA-A7-A0DA EIF2C3 SNP Missense_Mutation 1 36411332 G T 33 100 BRCA TCGA-A7-A0DA GRIK3 SNP Missense_Mutation 1 37270745 C G 28 58 BRCA TCGA-A7-A0DA EPS15 SNP Missense_Mutation 1 51912687 C A 18 89 BRCA TCGA-A7-A0DA DNAJC6 SNP Missense_Mutation 1 65860643 T A 64 72 BRCA TCGA-A7-A0DA PIK3CD SNP Silent 1 9777151 C G 21 46 BRCA TCGA-A7-A0DA DNMBP SNP Missense_Mutation 10 101643811 T G 56 54 BRCA TCGA-A7-A0DA NFKB2 DEL Frame_Shift_Del 10 104159031 GCCTGTATCCACAGGTGGCA - 46 49 BRCA TCGA-A7-A0DA NFKB2 DEL In_Frame_Del 10 104160110 GCTCTGCTG - 34 63 BRCA TCGA-A7-A0DA NFKB2 DEL Frame_Shift_Del 10 104160244 TGAGGG - 63 48 BRCA TCGA-A7-A0DA BEND7 SNP Missense_Mutation 10 13522910 C G 18 86 BRCA TCGA-A7-A0DA CUBN SNP Missense_Mutation 10 16893262 C G 24 39 BRCA TCGA-A7-A0DA CTNNA3 SNP Silent 10 69299408 T A 55 67 BRCA TCGA-A7-A0DA CHST3 DEL In_Frame_Del 10 73767504 AAG - 5 69 BRCA TCGA-A7-A0DA TTC18 SNP Splice_site 10 75071672 G C 46 63 BRCA TCGA-A7-A0DA CEP164 SNP Silent 11 117280410 G A 45 38 BRCA TCGA-A7-A0DA OR5I1 SNP Missense_Mutation 11 55703812 C T 27 53 BRCA TCGA-A7-A0DA SMTNL1 SNP Nonsense_Mutation 11 57313409 G T 41 57 BRCA TCGA-A7-A0DA OR10Q1 SNP Missense_Mutation 11 57996010 C A 28 51 BRCA TCGA-A7-A0DA RIN1 SNP Missense_Mutation 11 66103801 G C 35 59 BRCA TCGA-A7-A0DA GDPD5 SNP Splice_Site 11 75167801 C A 18 92 BRCA TCGA-A7-A0DA NAALAD2 SNP Missense_Mutation 11 89916133 G A 34 95 BRCA TCGA-A7-A0DA ARL1 SNP Missense_Mutation 12 101790184 T C 52 94 BRCA TCGA-A7-A0DA SLCO1C1 SNP Missense_Mutation 12 20858927 C T 20 82 BRCA TCGA-A7-A0DA CNTN1 SNP Missense_Mutation 12 41327271 A C 1 89 BRCA TCGA-A7-A0DA TSPAN31 SNP Missense_Mutation 12 58140421 A G 12 60 BRCA TCGA-A7-A0DA DPY19L2 DEL Frame_Shift_Del 12 63964604 G - 46 80 BRCA TCGA-A7-A0DA PIANP SNP Missense_Mutation 12 6804780 G T 46 78 BRCA TCGA-A7-A0DA CEP290 SNP Missense_Mutation 12 88513938 T C 56 73 BRCA TCGA-A7-A0DA DHRS12 SNP Missense_Mutation 13 52345531 C G 28 49 BRCA TCGA-A7-A0DA AJUBA SNP Missense_Mutation 14 23451265 C A 30 56 BRCA TCGA-A7-A0DA HEATR5A SNP Missense_Mutation 14 31787465 C G 32 100 BRCA TCGA-A7-A0DA LRFN5 SNP Missense_Mutation 14 42356845 C G 19 52 BRCA TCGA-A7-A0DA FANCM SNP Silent 14 45644732 A G 7 31 BRCA TCGA-A7-A0DA ASB7 DEL Splice_Site 15 101152633 GTGA - 44 99 BRCA TCGA-A7-A0DA ARHGAP11A SNP Missense_Mutation 15 32929935 C A 17 48 BRCA TCGA-A7-A0DA SLC12A1 SNP Missense_Mutation 15 48559801 C T 27 49 BRCA TCGA-A7-A0DA ETFA SNP Silent 15 76578063 T A 55 48 BRCA TCGA-A7-A0DA LOC648809 SNP Missense_Mutation 15 84790350 G A 47 70 BRCA TCGA-A7-A0DA ZNF774 DEL In_Frame_Del 15 90904480 CAT - 25 55 BRCA TCGA-A7-A0DA TRAF7 DEL Frame_Shift_Del 16 2226284 AT - 8 74 BRCA TCGA-A7-A0DA CASKIN1 SNP Missense_Mutation 16 2240078 G T 48 61 BRCA TCGA-A7-A0DA SRRM2 SNP Missense_Mutation 16 2816694 A C 12 43 BRCA TCGA-A7-A0DA LOC100132941 DEL Frame_Shift_Del 16 33006399 G - 48 42 BRCA TCGA-A7-A0DA ZNF174 SNP Silent 16 3458760 G A 40 29 BRCA TCGA-A7-A0DA SLX4 SNP Missense_Mutation 16 3632422 G C 44 85 BRCA TCGA-A7-A0DA NDRG4 SNP Missense_Mutation 16 58543214 C G 28 94 BRCA TCGA-A7-A0DA PPY2 SNP Missense_Mutation 17 26574521 G T 42 62 BRCA TCGA-A7-A0DA SUPT6H SNP Missense_Mutation 17 27028471 C G 25 96 BRCA TCGA-A7-A0DA OR3A1 SNP Missense_Mutation 17 3195848 G A 48 70 BRCA TCGA-A7-A0DA MSL1 SNP Silent 17 38290099 C T 22 53 BRCA TCGA-A7-A0DA C17orf47 SNP Missense_Mutation 17 56620848 C T 25 49 BRCA TCGA-A7-A0DA MARCH10 SNP Silent 17 60814611 C A 19 39 BRCA TCGA-A7-A0DA CLEC10A SNP Missense_Mutation 17 6978705 A C 8 57 BRCA TCGA-A7-A0DA ELP5 SNP Missense_Mutation 17 7158042 T C 54 77 BRCA TCGA-A7-A0DA MGAT5B SNP Splice_Site 17 74928858 G T 44 91 BRCA TCGA-A7-A0DA TP53 SNP Missense_Mutation 17 7578265 A G 12 68 BRCA TCGA-A7-A0DA LOC100289074 SNP Missense_Mutation 17 81083419 G A 40 50 BRCA TCGA-A7-A0DA ATP8B1 SNP Splice_Site 18 55361813 C T 18 96 BRCA TCGA-A7-A0DA LDLR SNP Missense_Mutation 19 11216199 G T 36 83 BRCA TCGA-A7-A0DA ATP1A3 SNP Missense_Mutation 19 42474581 C A 22 90 BRCA TCGA-A7-A0DA PPP1R13L SNP Missense_Mutation 19 45900186 C T 28 57 BRCA TCGA-A7-A0DA BCAT2 SNP Missense_Mutation 19 49302971 C T 23 92 BRCA TCGA-A7-A0DA KLK15 SNP Missense_Mutation 19 51330004 G T 47 71 BRCA TCGA-A7-A0DA LILRA6 SNP Nonsense_Mutation 19 54744774 G T 34 50 BRCA TCGA-A7-A0DA COL5A2 SNP Silent 2 189904113 A T 15 47 BRCA TCGA-A7-A0DA STAT4 SNP Missense_Mutation 2 191898277 T A 61 51 BRCA TCGA-A7-A0DA MYT1L SNP Missense_Mutation 2 1946873 C T 23 74 BRCA TCGA-A7-A0DA SPEG DEL In_Frame_Del 2 220329218 GCTGTGCCGGCT - 42 61 BRCA TCGA-A7-A0DA C2orf71 SNP Missense_Mutation 2 29294720 G T 35 55 BRCA TCGA-A7-A0DA USP34 SNP Missense_Mutation 2 61520625 G C 42 95 BRCA TCGA-A7-A0DA TIA1 SNP Missense_Mutation 2 70454946 G A 47 95 BRCA TCGA-A7-A0DA CD8A SNP Missense_Mutation 2 87016512 C A 26 57 BRCA TCGA-A7-A0DA VWA3B SNP Missense_Mutation 2 98834413 G C 35 46 BRCA TCGA-A7-A0DA NSFL1C SNP Missense_Mutation 20 1434913 G A 47 81 BRCA TCGA-A7-A0DA COX4I2 SNP Missense_Mutation 20 30227892 A G 3 78 BRCA TCGA-A7-A0DA CDC25B SNP Silent 20 3782017 C T 30 54 BRCA TCGA-A7-A0DA KCNB1 SNP Silent 20 47989961 C T 27 22 BRCA TCGA-A7-A0DA PI4KA SNP Missense_Mutation 22 21173951 C G 28 78 BRCA TCGA-A7-A0DA SMC1B DEL Frame_Shift_Del 22 45750849 CTCTTGAAACTTGT - 20 51 BRCA TCGA-A7-A0DA ZBED4 SNP Silent 22 50279086 G A 37 44 BRCA TCGA-A7-A0DA MST4 SNP Splice_site 23 131202597 A G 3 55 BRCA TCGA-A7-A0DA FLNA SNP Missense_Mutation 23 153586901 C T 29 85 BRCA TCGA-A7-A0DA MXRA5 SNP Silent 23 3241923 A G 3 24 BRCA TCGA-A7-A0DA UBA1 SNP Silent 23 47061807 C T 31 46 BRCA TCGA-A7-A0DA TRO SNP Missense_Mutation 23 54949939 T A 49 54 BRCA TCGA-A7-A0DA PAGE2 SNP Silent 23 55117826 A G 11 45 BRCA TCGA-A7-A0DA VCX3B SNP Nonsense_Mutation 23 8434392 G T 41 77 BRCA TCGA-A7-A0DA DZIP3 SNP Missense_Mutation 3 108355480 A T 4 51 BRCA TCGA-A7-A0DA RHO DEL In_Frame_Del 3 129251435 CATGGTCATCAT - 25 49 BRCA TCGA-A7-A0DA KLHL24 SNP Missense_Mutation 3 183390243 A G 12 93 BRCA TCGA-A7-A0DA ECE2 SNP Missense_Mutation 3 183994723 C T 19 84 BRCA TCGA-A7-A0DA VILL SNP Missense_Mutation 3 38039808 C A 19 67 BRCA TCGA-A7-A0DA C3orf77 SNP Splice_Site 3 44332261 A T 7 75 BRCA TCGA-A7-A0DA LOC100287763 SNP Missense_Mutation 3 98244069 C T 29 58 BRCA TCGA-A7-A0DA MRFAP1 DEL Frame_Shift_Del 4 6642829 C - 18 38 BRCA TCGA-A7-A0DA CATSPER3 SNP Missense_Mutation 5 134346160 G C 34 66 BRCA TCGA-A7-A0DA ATP10B SNP Missense_Mutation 5 160063260 C A 25 57 BRCA TCGA-A7-A0DA SIM1 SNP Missense_Mutation 6 100897470 G T 46 97 BRCA TCGA-A7-A0DA HDAC2 SNP Missense_Mutation 6 114274578 G A 45 100 BRCA TCGA-A7-A0DA VNN3 SNP Missense_Mutation 6 133047893 G C 46 69 BRCA TCGA-A7-A0DA HIST1H3A SNP Missense_Mutation 6 26020728 C T 20 94 BRCA TCGA-A7-A0DA HIST1H2BB SNP Missense_Mutation 6 26043523 C G 20 70 BRCA TCGA-A7-A0DA HIST1H2BB SNP Missense_Mutation 6 26043604 C G 32 98 BRCA TCGA-A7-A0DA HIST1H1T SNP Missense_Mutation 6 26108318 A G 10 56 BRCA TCGA-A7-A0DA HIST1H3I SNP Missense_Mutation 6 27840056 C A 26 96 BRCA TCGA-A7-A0DA SYNGAP1 DEL Frame_Shift_Del 6 33403338 CCGAAAGAGA - 26 93 BRCA TCGA-A7-A0DA ZNF318 SNP Missense_Mutation 6 43304909 C G 20 55 BRCA TCGA-A7-A0DA KCNQ5 SNP Missense_Mutation 6 73904256 G A 38 56 BRCA TCGA-A7-A0DA SRRT SNP Missense_Mutation 7 100485995 C G 24 93 BRCA TCGA-A7-A0DA MUC3A SNP Silent 7 100552017 C T 32 49 BRCA TCGA-A7-A0DA TSPAN12 SNP Nonsense_Mutation 7 120428909 G A 48 98 BRCA TCGA-A7-A0DA HYAL4 SNP Missense_Mutation 7 123516844 G A 45 66 BRCA TCGA-A7-A0DA GIMAP8 SNP Missense_Mutation 7 150171337 C T 29 52 BRCA TCGA-A7-A0DA DNAH11 DEL Frame_Shift_Del 7 21775324 GGAAAACCTCTAAT - 35 54 BRCA TCGA-A7-A0DA LSM5 SNP Missense_Mutation 7 32529929 T A 61 62 BRCA TCGA-A7-A0DA TAF6 SNP Missense_Mutation 7 99707866 G A 36 79 BRCA TCGA-A7-A0DA PVRIG SNP Missense_Mutation 7 99818572 G A 42 44 BRCA TCGA-A7-A0DA CSMD3 SNP Missense_Mutation 8 113353841 C G 32 98 BRCA TCGA-A7-A0DA KLHL38 SNP Silent 8 124663967 G T 47 51 BRCA TCGA-A7-A0DA FAM135B SNP Nonsense_Mutation 8 139209858 G A 39 78 BRCA TCGA-A7-A0DA PCM1 SNP Missense_Mutation 8 17869182 C G 32 98 BRCA TCGA-A7-A0DA TMEM66 SNP Missense_Mutation 8 29924354 G A 44 83 BRCA TCGA-A7-A0DA ADAM2 SNP Missense_Mutation 8 39634664 C A 20 52 BRCA TCGA-A7-A0DA ST18 DEL In_Frame_Del 8 53084997 CAGATACATTTTTTT - 17 52 BRCA TCGA-A7-A0DA IMPA1 SNP Missense_Mutation 8 82598029 C G 20 48 BRCA TCGA-A7-A0DA ZNF462 SNP Missense_Mutation 9 109773238 A G 4 42 BRCA TCGA-A7-A0DA RGS3 SNP Missense_Mutation 9 116356374 T C 58 57 BRCA TCGA-A7-A0DA NPDC1 SNP Missense_Mutation 9 139935565 C T 21 55 BRCA TCGA-A7-A0DA KCNV2 SNP Silent 9 2729625 C T 25 38 BRCA TCGA-A7-A0DA UBAP2 SNP Missense_Mutation 9 33935827 C T 28 43 BRCA TCGA-A7-A0DA FGD3 SNP Missense_Mutation 9 95738615 G T 36 52 BRCA TCGA-A7-A0DB LCE3D SNP Silent 1 152552176 G A 38 36 BRCA TCGA-A7-A0DB HEATR1 SNP Splice_site 1 236715300 T G 56 75 BRCA TCGA-A7-A0DB CCKBR SNP Missense_Mutation 11 6291530 G A 40 49 BRCA TCGA-A7-A0DB EHD1 SNP Silent 11 64627723 G A 33 81 BRCA TCGA-A7-A0DB WNT5B SNP Missense_Mutation 12 1740546 C T 19 67 BRCA TCGA-A7-A0DB CD163L1 SNP Missense_Mutation 12 7527952 G T 33 55 BRCA TCGA-A7-A0DB WNK1 SNP Missense_Mutation 12 996462 C G 32 81 BRCA TCGA-A7-A0DB FAM10A4 SNP Missense_Mutation 13 50746931 G A 37 57 BRCA TCGA-A7-A0DB SYNE2 SNP Missense_Mutation 14 64580096 C G 32 56 BRCA TCGA-A7-A0DB SRSF5 SNP Silent 14 70238145 A T 12 50 BRCA TCGA-A7-A0DB HEATR4 SNP Silent 14 73974925 C T 32 59 BRCA TCGA-A7-A0DB HEATR4 SNP Silent 14 73974931 C T 29 55 BRCA TCGA-A7-A0DB YLPM1 SNP Missense_Mutation 14 75283664 G C 41 100 BRCA TCGA-A7-A0DB KRT25 SNP Missense_Mutation 17 38907252 C A 27 84 BRCA TCGA-A7-A0DB TANC2 SNP Silent 17 61315386 A G 4 42 BRCA TCGA-A7-A0DB ADNP2 SNP Missense_Mutation 18 77895086 C G 32 70 BRCA TCGA-A7-A0DB ZNF506 SNP Missense_Mutation 19 19906463 T C 49 29 BRCA TCGA-A7-A0DB ZNF432 SNP Missense_Mutation 19 52537525 C G 32 53 BRCA TCGA-A7-A0DB ZNF749 SNP Silent 19 57956493 G A 33 48 BRCA TCGA-A7-A0DB FBN3 SNP Missense_Mutation 19 8130997 C T 31 55 BRCA TCGA-A7-A0DB SLC9A2 SNP Missense_Mutation 2 103300760 G T 46 81 BRCA TCGA-A7-A0DB SCN2A SNP Missense_Mutation 2 166245948 C A 17 100 BRCA TCGA-A7-A0DB NGEF SNP Silent 2 233839577 A G 4 41 BRCA TCGA-A7-A0DB PLB1 SNP Splice_Site 2 28827627 G T 44 79 BRCA TCGA-A7-A0DB LPIN3 SNP Silent 20 39987407 G A 47 52 BRCA TCGA-A7-A0DB TMEM189-UBE2V1 SNP Missense_Mutation 20 48700722 A C 3 65 BRCA TCGA-A7-A0DB NUDT11 SNP Silent 23 51238952 C T 30 56 BRCA TCGA-A7-A0DB PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A7-A0DB ACAA1 SNP Nonsense_Mutation 3 38175453 G A 47 82 BRCA TCGA-A7-A0DB NUDT6 SNP Silent 4 123814028 A G 16 60 BRCA TCGA-A7-A0DB MAP3K1 INS Frame_Shift_Ins 5 56167801 - T 32 81 BRCA TCGA-A7-A0DB MAP3K1 INS Frame_Shift_Ins 5 56174851 - GC 15 55 BRCA TCGA-A7-A0DB BDP1 SNP Missense_Mutation 5 70782424 A G 9 62 BRCA TCGA-A7-A0DB HIST1H2AH SNP Silent 6 27115267 G A 33 71 BRCA TCGA-A7-A0DB C7orf53 SNP Silent 7 112124979 C G 23 28 BRCA TCGA-A7-A0DB ZKSCAN1 SNP Nonsense_Mutation 7 99621381 G A 42 77 BRCA TCGA-A7-A0DB TRAPPC9 SNP Silent 8 141231675 G A 45 68 BRCA TCGA-A7-A0DB LRRC14 SNP Missense_Mutation 8 145745252 G A 38 54 BRCA TCGA-A7-A13D TTF2 SNP Missense_Mutation 1 117620594 G A 39 92 BRCA TCGA-A7-A13D FLG2 SNP Nonsense_Mutation 1 152329634 T A 63 56 BRCA TCGA-A7-A13D SPEN SNP Silent 1 16261459 C T 24 49 BRCA TCGA-A7-A13D STX6 SNP Missense_Mutation 1 180959152 G C 45 70 BRCA TCGA-A7-A13D ATF3 SNP Silent 1 212791561 G A 39 40 BRCA TCGA-A7-A13D EPHB2 SNP Missense_Mutation 1 23236889 T G 63 44 BRCA TCGA-A7-A13D ARID4B SNP Missense_Mutation 1 235345422 T G 64 73 BRCA TCGA-A7-A13D RGS7 SNP Nonsense_Mutation 1 240966282 G C 48 87 BRCA TCGA-A7-A13D IL22RA1 SNP Missense_Mutation 1 24448186 G C 41 63 BRCA TCGA-A7-A13D BAI2 SNP Missense_Mutation 1 32203298 C G 25 74 BRCA TCGA-A7-A13D SYNC SNP Missense_Mutation 1 33160479 A G 6 78 BRCA TCGA-A7-A13D MACF1 SNP Missense_Mutation 1 39799297 C T 20 80 BRCA TCGA-A7-A13D LRRC8C SNP Missense_Mutation 1 90152042 G A 40 86 BRCA TCGA-A7-A13D KIAA1217 DEL Frame_Shift_Del 10 24722118 GTAAG - 48 98 BRCA TCGA-A7-A13D APBB1IP SNP Missense_Mutation 10 26781288 G A 48 83 BRCA TCGA-A7-A13D FAM21C SNP Missense_Mutation 10 46261214 T A 54 46 BRCA TCGA-A7-A13D WDFY4 SNP Missense_Mutation 10 49939380 T C 53 88 BRCA TCGA-A7-A13D PPA1 SNP Missense_Mutation 10 71978538 C A 18 100 BRCA TCGA-A7-A13D PRF1 SNP Silent 10 72357869 G A 36 40 BRCA TCGA-A7-A13D O3FAR1 SNP Silent 10 95326768 C T 23 45 BRCA TCGA-A7-A13D MMP13 SNP Missense_Mutation 11 102826194 G C 48 24 BRCA TCGA-A7-A13D OR52D1 SNP Missense_Mutation 11 5510400 G C 36 56 BRCA TCGA-A7-A13D OR5T3 SNP Silent 11 56020650 A G 3 49 BRCA TCGA-A7-A13D RASSF7 SNP Missense_Mutation 11 561784 G C 42 47 BRCA TCGA-A7-A13D OVCH2 SNP Silent 11 7723282 G C 34 55 BRCA TCGA-A7-A13D ACACB SNP Missense_Mutation 12 109654723 A T 12 91 BRCA TCGA-A7-A13D HCAR1 SNP Silent 12 123214320 G A 37 32 BRCA TCGA-A7-A13D RARG SNP Nonsense_Mutation 12 53609502 G C 48 71 BRCA TCGA-A7-A13D PCBP2 SNP Missense_Mutation 12 53853067 C G 28 97 BRCA TCGA-A7-A13D PTPRB SNP Silent 12 70974955 G C 45 62 BRCA TCGA-A7-A13D CCDC168 SNP Missense_Mutation 13 103384955 C A 28 45 BRCA TCGA-A7-A13D RASA3 SNP Missense_Mutation 13 114773080 G C 33 57 BRCA TCGA-A7-A13D USPL1 SNP Missense_Mutation 13 31205414 C A 28 60 BRCA TCGA-A7-A13D VWA8 DEL In_Frame_Del 13 42263507 CAA - 21 95 BRCA TCGA-A7-A13D HEATR5A SNP Missense_Mutation 14 31774324 C T 23 89 BRCA TCGA-A7-A13D ARHGAP11A SNP Missense_Mutation 15 32929244 A G 10 46 BRCA TCGA-A7-A13D STARD9 SNP Silent 15 42976692 C T 22 52 BRCA TCGA-A7-A13D PTPLAD1 DEL Splice_site 15 65851018 GAA - 41 76 BRCA TCGA-A7-A13D SIAH1 SNP Nonsense_Mutation 16 48396330 G A 45 100 BRCA TCGA-A7-A13D KLHDC4 SNP Missense_Mutation 16 87742952 G A 39 72 BRCA TCGA-A7-A13D TMEM220 SNP Splice_Site 17 10632347 C A 18 72 BRCA TCGA-A7-A13D NOS2 SNP Missense_Mutation 17 26101297 A C 1 91 BRCA TCGA-A7-A13D NR1D1 SNP Silent 17 38252225 T A 59 46 BRCA TCGA-A7-A13D AOC3 SNP Missense_Mutation 17 41004004 C T 22 84 BRCA TCGA-A7-A13D TP53 SNP Nonsense_Mutation 17 7578188 C A 29 83 BRCA TCGA-A7-A13D SGSH SNP Silent 17 78188424 G C 45 72 BRCA TCGA-A7-A13D CD97 SNP Nonsense_Mutation 19 14508566 G A 47 62 BRCA TCGA-A7-A13D EMR2 SNP Nonsense_Mutation 19 14876520 C T 21 52 BRCA TCGA-A7-A13D ZNF615 SNP Nonsense_Mutation 19 52497053 T A 62 82 BRCA TCGA-A7-A13D EPN1 SNP Silent 19 56200357 C T 18 59 BRCA TCGA-A7-A13D RANBP3 SNP Silent 19 5917815 G A 47 48 BRCA TCGA-A7-A13D DENND1C SNP Missense_Mutation 19 6476917 G A 38 71 BRCA TCGA-A7-A13D FKBP7 SNP Missense_Mutation 2 179343153 C G 32 60 BRCA TCGA-A7-A13D DNAH7 SNP Missense_Mutation 2 196765097 C T 27 98 BRCA TCGA-A7-A13D SLC23A3 SNP Missense_Mutation 2 220032945 G C 36 59 BRCA TCGA-A7-A13D NGEF SNP Silent 2 233785249 G A 37 42 BRCA TCGA-A7-A13D EML6 SNP Missense_Mutation 2 55080895 C G 17 57 BRCA TCGA-A7-A13D AUP1 SNP Splice_site 2 74756062 G A 42 95 BRCA TCGA-A7-A13D DNAH6 SNP Missense_Mutation 2 84930672 G A 33 95 BRCA TCGA-A7-A13D IGKV3D-20 SNP Missense_Mutation 2 90078144 C A 18 54 BRCA TCGA-A7-A13D KIF3B SNP Missense_Mutation 20 30904100 A T 1 62 BRCA TCGA-A7-A13D CDH26 SNP Missense_Mutation 20 58547126 G A 41 70 BRCA TCGA-A7-A13D ARFGAP1 SNP Missense_Mutation 20 61907987 C A 26 96 BRCA TCGA-A7-A13D UMODL1 SNP Splice_site 21 43542941 G T 44 50 BRCA TCGA-A7-A13D SHROOM2 SNP Missense_Mutation 23 9864381 G C 42 49 BRCA TCGA-A7-A13D PCDH19 SNP Missense_Mutation 23 99551448 G T 39 96 BRCA TCGA-A7-A13D LNP1 SNP Missense_Mutation 3 100170641 C T 23 53 BRCA TCGA-A7-A13D ADCY5 SNP Splice_site 3 123021902 C A 24 96 BRCA TCGA-A7-A13D EHHADH SNP Missense_Mutation 3 184911054 C G 20 86 BRCA TCGA-A7-A13D FYTTD1 SNP Silent 3 197505308 G A 36 52 BRCA TCGA-A7-A13D CELSR3 SNP Missense_Mutation 3 48694701 C T 19 95 BRCA TCGA-A7-A13D RASL11B SNP Missense_Mutation 4 53731906 G C 46 100 BRCA TCGA-A7-A13D CRMP1 SNP Silent 4 5844877 C T 30 46 BRCA TCGA-A7-A13D PRDM8 DEL Frame_Shift_Del 4 81122507 GC - 42 100 BRCA TCGA-A7-A13D AFF4 SNP Missense_Mutation 5 132228002 G C 37 53 BRCA TCGA-A7-A13D FAM13B SNP Missense_Mutation 5 137289955 G A 41 91 BRCA TCGA-A7-A13D NMUR2 SNP Missense_Mutation 5 151784051 C A 28 54 BRCA TCGA-A7-A13D C5orf4 SNP Missense_Mutation 5 154199668 C G 30 59 BRCA TCGA-A7-A13D MYO10 DEL Frame_Shift_Del 5 16680064 CTTGAATCAG - 32 100 BRCA TCGA-A7-A13D CEP72 SNP Missense_Mutation 5 653161 C A 25 75 BRCA TCGA-A7-A13D F2R SNP Missense_Mutation 5 76029028 C G 31 52 BRCA TCGA-A7-A13D CAST SNP Missense_Mutation 5 96079350 C T 31 70 BRCA TCGA-A7-A13D RGS17 DEL Frame_Shift_Del 6 153345454 A - 5 49 BRCA TCGA-A7-A13D RPS6KA2 SNP Missense_Mutation 6 166918092 G C 45 52 BRCA TCGA-A7-A13D TUBB SNP Missense_Mutation 6 30691194 G A 48 94 BRCA TCGA-A7-A13D GCLC SNP Missense_Mutation 6 53373506 C G 26 100 BRCA TCGA-A7-A13D PHF14 SNP Silent 7 11022150 A G 3 59 BRCA TCGA-A7-A13D FLNC SNP Silent 7 128485245 C T 30 51 BRCA TCGA-A7-A13D TSGA13 SNP Missense_Mutation 7 130357607 T A 50 49 BRCA TCGA-A7-A13D PAXIP1 SNP Splice_Site 7 154760837 C T 32 91 BRCA TCGA-A7-A13D RBM33 SNP Missense_Mutation 7 155473489 G A 37 76 BRCA TCGA-A7-A13D UBE3C SNP Silent 7 157046809 C G 30 51 BRCA TCGA-A7-A13D NUPL2 SNP Missense_Mutation 7 23239963 G C 47 55 BRCA TCGA-A7-A13D SDK1 SNP Missense_Mutation 7 4273040 C T 19 50 BRCA TCGA-A7-A13D RUNDC3B SNP Missense_Mutation 7 87258230 G T 44 71 BRCA TCGA-A7-A13D HAS2 SNP Missense_Mutation 8 122626391 C A 26 79 BRCA TCGA-A7-A13D PLEC SNP Missense_Mutation 8 144995865 C G 32 58 BRCA TCGA-A7-A13D MAK16 SNP Missense_Mutation 8 33354179 G C 37 88 BRCA TCGA-A7-A13D PRKDC SNP Missense_Mutation 8 48730110 G C 33 90 BRCA TCGA-A7-A13D POLE3 DEL In_Frame_Del 9 116171999 GTT - 36 57 BRCA TCGA-A7-A13D ZNF79 SNP Missense_Mutation 9 130207444 G C 40 47 BRCA TCGA-A7-A13D TRPM3 SNP Missense_Mutation 9 73399144 T C 52 81 BRCA TCGA-A7-A13D VPS13A SNP Silent 9 79890418 A G 7 48 BRCA TCGA-A7-A13F OLFML2B SNP Missense_Mutation 1 161954711 G A 38 58 BRCA TCGA-A7-A13F DDR2 SNP Missense_Mutation 1 162743378 G C 33 66 BRCA TCGA-A7-A13F OBSCN SNP Splice_site 1 228506585 T C 59 66 BRCA TCGA-A7-A13F NID1 SNP Silent 1 236157078 G A 37 50 BRCA TCGA-A7-A13F KCNIP2 SNP Missense_Mutation 10 103588945 C T 31 97 BRCA TCGA-A7-A13F LOC100128511 SNP Silent 10 21462603 A G 8 33 BRCA TCGA-A7-A13F MUC2 SNP Missense_Mutation 11 1101090 G A 40 50 BRCA TCGA-A7-A13F FOLH1 SNP Missense_Mutation 11 49221856 T C 52 55 BRCA TCGA-A7-A13F OR5R1 SNP Missense_Mutation 11 56185039 C T 27 55 BRCA TCGA-A7-A13F BAZ2A SNP Missense_Mutation 12 56992725 C A 18 97 BRCA TCGA-A7-A13F RPGRIP1 SNP Missense_Mutation 14 21796707 A T 8 70 BRCA TCGA-A7-A13F LTBP2 SNP Silent 14 74975371 G A 40 42 BRCA TCGA-A7-A13F SMCR8 SNP Missense_Mutation 17 18221324 G A 42 52 BRCA TCGA-A7-A13F CAMKK1 SNP Missense_Mutation 17 3776749 T G 50 86 BRCA TCGA-A7-A13F KRTAP4-6 SNP Missense_Mutation 17 39296423 C T 19 38 BRCA TCGA-A7-A13F GP1BA SNP Silent 17 4837763 C T 32 63 BRCA TCGA-A7-A13F C17orf101 SNP Missense_Mutation 17 80369359 T A 59 56 BRCA TCGA-A7-A13F DPY19L3 SNP Missense_Mutation 19 32968544 G A 33 100 BRCA TCGA-A7-A13F SPHK2 SNP Silent 19 49129267 C T 27 55 BRCA TCGA-A7-A13F CNOT3 SNP Missense_Mutation 19 54650352 G C 45 89 BRCA TCGA-A7-A13F VAV1 SNP Missense_Mutation 19 6833625 G A 37 69 BRCA TCGA-A7-A13F YSK4 SNP Missense_Mutation 2 135745195 G C 34 53 BRCA TCGA-A7-A13F ATAD2B SNP Missense_Mutation 2 24092569 C A 32 87 BRCA TCGA-A7-A13F BIRC6 SNP Missense_Mutation 2 32822992 G T 36 99 BRCA TCGA-A7-A13F PRKCE SNP Missense_Mutation 2 46070194 C T 31 83 BRCA TCGA-A7-A13F SNAI1 SNP Missense_Mutation 20 48604456 C T 23 71 BRCA TCGA-A7-A13F WDR44 SNP Missense_Mutation 23 117540916 C T 25 100 BRCA TCGA-A7-A13F TRPC1 SNP Missense_Mutation 3 142503607 G A 44 100 BRCA TCGA-A7-A13F DSPP SNP Missense_Mutation 4 88535329 T A 59 60 BRCA TCGA-A7-A13F FAM169A DEL In_Frame_Del 5 74077801 CAT - 21 46 BRCA TCGA-A7-A13F TFAP2A SNP Missense_Mutation 6 10410138 A G 10 88 BRCA TCGA-A7-A13F FAM26D SNP Missense_Mutation 6 116879271 T C 61 80 BRCA TCGA-A7-A13F FAM46A DEL Frame_Shift_Del 6 82459981 TC - 58 78 BRCA TCGA-A7-A13F ABCB8 SNP Missense_Mutation 7 150741305 G T 43 50 BRCA TCGA-A7-A13F PEX2 SNP Missense_Mutation 8 77895909 C T 19 83 BRCA TCGA-A7-A13G PLEKHA6 SNP Missense_Mutation 1 204210567 T C 54 56 BRCA TCGA-A7-A13G GBP5 SNP Missense_Mutation 1 89732807 T C 56 50 BRCA TCGA-A7-A13G ASAH2B SNP Silent 10 52502735 C T 29 65 BRCA TCGA-A7-A13G KCNK4 SNP Missense_Mutation 11 64064626 C T 27 81 BRCA TCGA-A7-A13G FAT3 SNP Missense_Mutation 11 92531298 G T 33 85 BRCA TCGA-A7-A13G CD163L1 SNP Silent 12 7550864 G A 34 53 BRCA TCGA-A7-A13G AGBL1 SNP Silent 15 87097616 C T 28 59 BRCA TCGA-A7-A13G RABEP1 DEL Frame_Shift_Del 17 5266266 AC - 2 62 BRCA TCGA-A7-A13G ZNF180 SNP Missense_Mutation 19 44981511 A T 3 90 BRCA TCGA-A7-A13G VWC2L SNP Missense_Mutation 2 215440482 G A 39 98 BRCA TCGA-A7-A13G PPP1R7 SNP Missense_Mutation 2 242098694 G A 33 100 BRCA TCGA-A7-A13G ARHGEF33 SNP Silent 2 39199061 G A 45 76 BRCA TCGA-A7-A13G DYSF SNP Missense_Mutation 2 71891541 G T 38 71 BRCA TCGA-A7-A13G F8 SNP Silent 23 154159395 C T 29 46 BRCA TCGA-A7-A13G PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A7-A13G PTPN23 SNP Missense_Mutation 3 47451185 G C 34 93 BRCA TCGA-A7-A13G LRBA SNP Missense_Mutation 4 151223869 C G 30 98 BRCA TCGA-A7-A13G CSN1S1 SNP Missense_Mutation 4 70810640 G A 48 33 BRCA TCGA-A7-A13G CDC25C SNP Missense_Mutation 5 137666850 G A 45 73 BRCA TCGA-A7-A13G MEF2C SNP Silent 5 88047758 G A 35 98 BRCA TCGA-A7-A13G CEP85L SNP Missense_Mutation 6 118953648 C G 26 87 BRCA TCGA-A7-A13G FNDC1 SNP Silent 6 159635993 C T 17 66 BRCA TCGA-A7-A13G MUC12 SNP Missense_Mutation 7 100643689 C G 17 52 BRCA TCGA-A7-A13G NPC1L1 SNP Missense_Mutation 7 44579574 C T 27 75 BRCA TCGA-A7-A13G GPT SNP Silent 8 145730243 G T 40 14 BRCA TCGA-A7-A13G CHD7 SNP Missense_Mutation 8 61777594 T A 51 92 BRCA TCGA-A7-A26E HRNR SNP Silent 1 152189272 G A 40 28 BRCA TCGA-A7-A26E FLG SNP Silent 1 152282658 G A 39 35 BRCA TCGA-A7-A26E ZYG11A SNP Silent 1 53326444 G A 45 95 BRCA TCGA-A7-A26E FBXW4 SNP Silent 10 103371430 G A 40 39 BRCA TCGA-A7-A26E HECTD2 SNP Silent 10 93256090 C T 32 63 BRCA TCGA-A7-A26E CEP55 SNP Silent 10 95279501 A G 4 50 BRCA TCGA-A7-A26E E2F8 SNP Missense_Mutation 11 19256462 C T 30 84 BRCA TCGA-A7-A26E BRAP SNP Missense_Mutation 12 112121094 C T 29 94 BRCA TCGA-A7-A26E KDM2B SNP Silent 12 121878877 C A 25 51 BRCA TCGA-A7-A26E TPH2 SNP Missense_Mutation 12 72338138 A G 9 90 BRCA TCGA-A7-A26E B3GALTL SNP Silent 13 31897924 C T 31 45 BRCA TCGA-A7-A26E FAM179B SNP Missense_Mutation 14 45513889 G A 45 83 BRCA TCGA-A7-A26E CASC5 SNP Nonsense_Mutation 15 40913336 C T 29 55 BRCA TCGA-A7-A26E CSPG4 SNP Missense_Mutation 15 75967903 C G 20 97 BRCA TCGA-A7-A26E USP32 SNP Missense_Mutation 17 58348824 A G 4 91 BRCA TCGA-A7-A26E ABCA8 SNP Missense_Mutation 17 66871785 C T 31 79 BRCA TCGA-A7-A26E SDK2 SNP Missense_Mutation 17 71375348 C A 30 97 BRCA TCGA-A7-A26E FHOD3 SNP Missense_Mutation 18 34359414 G A 37 76 BRCA TCGA-A7-A26E ARHGAP28 SNP Silent 18 6890051 C A 26 52 BRCA TCGA-A7-A26E PLVAP SNP Missense_Mutation 19 17476399 G T 38 49 BRCA TCGA-A7-A26E LRP1B SNP Silent 2 141283540 G A 33 66 BRCA TCGA-A7-A26E NFE2L2 SNP Splice_Site 2 178098803 C T 18 98 BRCA TCGA-A7-A26E PRKAG3 SNP Missense_Mutation 2 219692583 C T 29 95 BRCA TCGA-A7-A26E FAM134A SNP Silent 2 220045923 G A 33 82 BRCA TCGA-A7-A26E PCGF1 SNP Silent 2 74734188 G A 45 50 BRCA TCGA-A7-A26E HK2 SNP Missense_Mutation 2 75117929 C T 26 94 BRCA TCGA-A7-A26E RUNX1 INS Frame_Shift_Ins 21 36252994 - C 50 92 BRCA TCGA-A7-A26E UMODL1 SNP Missense_Mutation 21 43496126 C T 30 81 BRCA TCGA-A7-A26E SFI1 SNP Missense_Mutation 22 32003986 G T 46 55 BRCA TCGA-A7-A26E TOM1 SNP Missense_Mutation 22 35713945 C T 19 100 BRCA TCGA-A7-A26E RBMXL3 SNP Missense_Mutation 23 114424746 G A 37 55 BRCA TCGA-A7-A26E HMGB3 SNP Splice_site 23 150155775 G T 35 80 BRCA TCGA-A7-A26E KDM5C INS In_Frame_Ins 23 53224485 - GGT 29 57 BRCA TCGA-A7-A26E KDM5C INS Frame_Shift_Ins 23 53224486 - CCTGTCG 7 59 BRCA TCGA-A7-A26E PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-A7-A26E SLC10A4 SNP Missense_Mutation 4 48486056 G A 38 48 BRCA TCGA-A7-A26E CWC27 SNP Missense_Mutation 5 64267547 G A 33 64 BRCA TCGA-A7-A26E ANKRD34B SNP Silent 5 79855107 G A 40 53 BRCA TCGA-A7-A26E SLC4A2 SNP Missense_Mutation 7 150773425 G A 37 80 BRCA TCGA-A7-A26E QSOX2 SNP Missense_Mutation 9 139101011 C T 19 93 BRCA TCGA-A7-A26F ASH1L SNP Missense_Mutation 1 155448988 G A 46 84 BRCA TCGA-A7-A26F CACYBP SNP Silent 1 174977786 G A 47 40 BRCA TCGA-A7-A26F ATP6V1G3 SNP Missense_Mutation 1 198498240 C A 32 87 BRCA TCGA-A7-A26F ABCA4 SNP Silent 1 94522223 G A 33 56 BRCA TCGA-A7-A26F PTEN DEL Frame_Shift_Del 10 89690810 GA - 45 98 BRCA TCGA-A7-A26F ACTN3 SNP Silent 11 66319055 G A 40 81 BRCA TCGA-A7-A26F STX2 SNP Missense_Mutation 12 131306288 C G 29 85 BRCA TCGA-A7-A26F IFNG SNP Missense_Mutation 12 68551735 G C 48 50 BRCA TCGA-A7-A26F ABCC4 SNP Silent 13 95830023 G A 33 63 BRCA TCGA-A7-A26F RBM23 INS In_Frame_Ins 14 23371265 - GCA 39 47 BRCA TCGA-A7-A26F POLR2C SNP Nonsense_Mutation 16 57504903 G T 41 96 BRCA TCGA-A7-A26F ALOX15 SNP Missense_Mutation 17 4540413 G C 41 58 BRCA TCGA-A7-A26F GPRC5C SNP Silent 17 72436047 C T 18 85 BRCA TCGA-A7-A26F TP53 SNP Missense_Mutation 17 7578403 C A 25 84 BRCA TCGA-A7-A26F NWD1 SNP Nonsense_Mutation 19 16926010 G A 47 64 BRCA TCGA-A7-A26F MEGF8 SNP Missense_Mutation 19 42841015 C T 19 79 BRCA TCGA-A7-A26F MYBPC2 SNP Missense_Mutation 19 50939080 G A 40 32 BRCA TCGA-A7-A26F EPB41L5 SNP Missense_Mutation 2 120831738 C T 31 81 BRCA TCGA-A7-A26F CHN1 SNP Missense_Mutation 2 175742762 C T 29 100 BRCA TCGA-A7-A26F AQP12A SNP Missense_Mutation 2 241631392 C T 26 56 BRCA TCGA-A7-A26F SERPINA7 SNP Missense_Mutation 23 105278233 A T 3 69 BRCA TCGA-A7-A26F RBM41 SNP Silent 23 106310811 C G 31 50 BRCA TCGA-A7-A26F MYLK SNP Missense_Mutation 3 123457877 C T 19 88 BRCA TCGA-A7-A26F RFC1 SNP Missense_Mutation 4 39347084 G A 39 51 BRCA TCGA-A7-A26F CEP120 SNP Missense_Mutation 5 122713082 G A 39 66 BRCA TCGA-A7-A26F LARS SNP Missense_Mutation 5 145531429 T A 54 91 BRCA TCGA-A7-A26F PIK3R1 INS In_Frame_Ins 5 67589611 - AAAAGT 1 64 BRCA TCGA-A7-A26F HS3ST5 SNP Missense_Mutation 6 114378876 C T 18 100 BRCA TCGA-A7-A26F FAM184A SNP Missense_Mutation 6 119301436 G A 40 85 BRCA TCGA-A7-A26F GPR22 SNP Missense_Mutation 7 107115253 C A 25 100 BRCA TCGA-A7-A26F PIP SNP Silent 7 142829239 C T 21 50 BRCA TCGA-A7-A26F COL14A1 SNP Splice_Site 8 121237326 G A 35 87 BRCA TCGA-A7-A26G FLG2 SNP Missense_Mutation 1 152327936 C A 21 53 BRCA TCGA-A7-A26G FAM5C SNP Missense_Mutation 1 190067488 G T 35 82 BRCA TCGA-A7-A26G PTEN SNP Missense_Mutation 10 89692920 T A 49 88 BRCA TCGA-A7-A26G MUC5B SNP Silent 11 1266561 G A 41 44 BRCA TCGA-A7-A26G FLI1 SNP Silent 11 128680835 C A 22 45 BRCA TCGA-A7-A26G OR4C15 SNP Missense_Mutation 11 55322874 G T 33 49 BRCA TCGA-A7-A26G OR5T1 SNP Missense_Mutation 11 56043960 T A 51 50 BRCA TCGA-A7-A26G AHNAK SNP Silent 11 62300539 C A 30 42 BRCA TCGA-A7-A26G PDZRN4 SNP Silent 12 41967119 C T 19 46 BRCA TCGA-A7-A26G REC8 SNP Missense_Mutation 14 24649088 G A 46 57 BRCA TCGA-A7-A26G OTUD7A SNP Missense_Mutation 15 31776558 C T 30 94 BRCA TCGA-A7-A26G SCAMP2 SNP Silent 15 75142959 G A 46 42 BRCA TCGA-A7-A26G TEKT5 SNP Silent 16 10788509 C T 27 30 BRCA TCGA-A7-A26G ACSF3 SNP Missense_Mutation 16 89220512 C G 23 86 BRCA TCGA-A7-A26G SPAG5 SNP Missense_Mutation 17 26912598 G A 41 62 BRCA TCGA-A7-A26G CDK12 INS Splice_Site 17 37666015 - T 44 100 BRCA TCGA-A7-A26G TP53 SNP Missense_Mutation 17 7578191 A G 15 88 BRCA TCGA-A7-A26G ROCK1 SNP Missense_Mutation 18 18534990 C T 29 100 BRCA TCGA-A7-A26G LGALS13 SNP Missense_Mutation 19 40095975 G A 45 48 BRCA TCGA-A7-A26G FCGBP SNP Missense_Mutation 19 40399508 C T 23 72 BRCA TCGA-A7-A26G KIR2DL3 SNP Missense_Mutation 19 55253450 T G 55 48 BRCA TCGA-A7-A26G EPS8L1 SNP Splice_site 19 55598981 G A 45 81 BRCA TCGA-A7-A26G ZNF470 SNP Silent 19 57089783 C A 22 45 BRCA TCGA-A7-A26G CNTNAP5 SNP Missense_Mutation 2 125530458 C A 17 77 BRCA TCGA-A7-A26G SCN1A SNP Missense_Mutation 2 166912953 C T 29 68 BRCA TCGA-A7-A26G UBE2F SNP Missense_Mutation 2 238933990 A C 1 68 BRCA TCGA-A7-A26G SRSF7 DEL Frame_Shift_Del 2 38976661 AAAT - 1 55 BRCA TCGA-A7-A26G SEMA4C SNP Missense_Mutation 2 97531630 A G 6 86 BRCA TCGA-A7-A26G RNF24 SNP Missense_Mutation 20 3944669 G A 45 56 BRCA TCGA-A7-A26G PCBP3 SNP Silent 21 47349884 C T 31 65 BRCA TCGA-A7-A26G MTM1 SNP Missense_Mutation 23 149787533 C A 28 94 BRCA TCGA-A7-A26G GRIPAP1 SNP Silent 23 48838243 G C 45 44 BRCA TCGA-A7-A26G GPR174 SNP Missense_Mutation 23 78427390 A T 6 87 BRCA TCGA-A7-A26G PCCB SNP Silent 3 135974724 C T 29 62 BRCA TCGA-A7-A26G VEPH1 SNP Missense_Mutation 3 156979018 C G 30 87 BRCA TCGA-A7-A26G EPHB3 SNP Missense_Mutation 3 184298863 T A 54 73 BRCA TCGA-A7-A26G LPP SNP Missense_Mutation 3 188202440 C G 32 68 BRCA TCGA-A7-A26G MUC4 SNP Missense_Mutation 3 195508692 G C 48 45 BRCA TCGA-A7-A26G OSBPL10 SNP Silent 3 31725409 G A 47 57 BRCA TCGA-A7-A26G ARL6IP5 INS Splice_Site 3 69134375 - T 44 79 BRCA TCGA-A7-A26G COL25A1 SNP Splice_Site 4 109817822 C G 18 80 BRCA TCGA-A7-A26G DNAH5 SNP Silent 5 13901544 G A 37 46 BRCA TCGA-A7-A26G NSD1 SNP Missense_Mutation 5 176637364 G A 34 69 BRCA TCGA-A7-A26G PDE10A SNP Missense_Mutation 6 165846532 C A 18 100 BRCA TCGA-A7-A26G PPARD SNP Silent 6 35393844 G A 35 59 BRCA TCGA-A7-A26G GFRAL SNP Silent 6 55216082 G A 47 55 BRCA TCGA-A7-A26G ABCA13 SNP Missense_Mutation 7 48318080 T C 52 61 BRCA TCGA-A7-A26G PCLO SNP Silent 7 82579110 A T 5 36 BRCA TCGA-A7-A26G ASNS SNP Missense_Mutation 7 97498300 A G 2 68 BRCA TCGA-A7-A26G TRAPPC9 SNP Missense_Mutation 8 140744326 C T 27 77 BRCA TCGA-A7-A26G C9orf142 SNP Missense_Mutation 9 139887830 C A 22 38 BRCA TCGA-A7-A26H DNAJC16 SNP Nonsense_Mutation 1 15890821 C G 29 75 BRCA TCGA-A7-A26H NADK SNP Missense_Mutation 1 1688035 C T 19 86 BRCA TCGA-A7-A26H ASTN1 SNP Nonsense_Mutation 1 176915214 G T 42 59 BRCA TCGA-A7-A26H XPR1 SNP Missense_Mutation 1 180651527 A G 10 79 BRCA TCGA-A7-A26H CDC42BPA SNP Missense_Mutation 1 227261635 C T 32 97 BRCA TCGA-A7-A26H ST3GAL3 SNP Missense_Mutation 1 44303968 C T 19 63 BRCA TCGA-A7-A26H JUN SNP Nonsense_Mutation 1 59248385 C A 31 96 BRCA TCGA-A7-A26H ZNHIT6 SNP Missense_Mutation 1 86173517 C G 32 61 BRCA TCGA-A7-A26H MKI67 SNP Missense_Mutation 10 129913274 T G 52 48 BRCA TCGA-A7-A26H MUC2 SNP Missense_Mutation 11 1093757 C T 24 73 BRCA TCGA-A7-A26H SLC6A5 SNP Missense_Mutation 11 20636348 G T 41 80 BRCA TCGA-A7-A26H KCNQ1 SNP Missense_Mutation 11 2591933 G A 40 95 BRCA TCGA-A7-A26H OR51D1 SNP Silent 11 4661647 G A 47 35 BRCA TCGA-A7-A26H OR4C15 SNP Missense_Mutation 11 55321885 T G 63 50 BRCA TCGA-A7-A26H OR5D14 SNP Silent 11 55563055 G A 45 54 BRCA TCGA-A7-A26H CTSF SNP Missense_Mutation 11 66331579 C T 22 89 BRCA TCGA-A7-A26H ATXN2 SNP Missense_Mutation 12 111923644 G A 45 86 BRCA TCGA-A7-A26H HNF1A SNP Missense_Mutation 12 121426687 C A 17 60 BRCA TCGA-A7-A26H ANKLE2 SNP Missense_Mutation 12 133306491 C G 32 48 BRCA TCGA-A7-A26H TMEM117 SNP Missense_Mutation 12 44238546 C T 27 100 BRCA TCGA-A7-A26H PCBP2 INS Frame_Shift_Ins 12 53854905 - T 7 90 BRCA TCGA-A7-A26H MYO1A SNP Missense_Mutation 12 57436929 C T 23 96 BRCA TCGA-A7-A26H MDM1 SNP Missense_Mutation 12 68716927 G C 41 71 BRCA TCGA-A7-A26H ITGBL1 SNP Silent 13 102250555 G A 41 57 BRCA TCGA-A7-A26H PDS5B SNP Silent 13 33315238 T G 53 49 BRCA TCGA-A7-A26H DIAPH3 SNP Missense_Mutation 13 60545069 G A 41 59 BRCA TCGA-A7-A26H SLITRK1 SNP Missense_Mutation 13 84453665 C T 31 93 BRCA TCGA-A7-A26H PPP1R13B SNP Splice_site 14 104263855 T A 50 76 BRCA TCGA-A7-A26H MNAT1 SNP Missense_Mutation 14 61434964 G C 33 97 BRCA TCGA-A7-A26H CACNA1H SNP Nonsense_Mutation 16 1254329 G A 41 49 BRCA TCGA-A7-A26H POLR3E SNP Silent 16 22337485 C T 32 56 BRCA TCGA-A7-A26H RBBP6 SNP Missense_Mutation 16 24579150 G A 45 96 BRCA TCGA-A7-A26H ADCY9 SNP Missense_Mutation 16 4015842 G T 36 92 BRCA TCGA-A7-A26H MAP2K4 SNP Missense_Mutation 17 12044531 T C 55 77 BRCA TCGA-A7-A26H TAOK1 SNP Nonsense_Mutation 17 27818872 G T 41 100 BRCA TCGA-A7-A26H NF1 SNP Silent 17 29556189 C T 30 49 BRCA TCGA-A7-A26H BRCA1 DEL Frame_Shift_Del 17 41245484 TGTC - 63 60 BRCA TCGA-A7-A26H TOB1 INS In_Frame_Ins 17 48941102 - AACACT 5 90 BRCA TCGA-A7-A26H MAP2K6 SNP Missense_Mutation 17 67537883 C A 32 64 BRCA TCGA-A7-A26H KIAA0195 SNP Missense_Mutation 17 73489641 G T 41 87 BRCA TCGA-A7-A26H KRBA2 SNP Silent 17 8272527 G A 40 42 BRCA TCGA-A7-A26H WDR7 SNP Missense_Mutation 18 54354174 C T 29 80 BRCA TCGA-A7-A26H ABCA7 SNP Missense_Mutation 19 1064218 C T 23 51 BRCA TCGA-A7-A26H GPX4 SNP Silent 19 1106407 C T 31 42 BRCA TCGA-A7-A26H FBXW9 SNP Missense_Mutation 19 12800969 G C 37 34 BRCA TCGA-A7-A26H CACNA1A SNP Missense_Mutation 19 13387897 C G 29 81 BRCA TCGA-A7-A26H BRD4 SNP Missense_Mutation 19 15366988 C G 32 77 BRCA TCGA-A7-A26H ZNF792 SNP Missense_Mutation 19 35450195 G C 45 54 BRCA TCGA-A7-A26H ZNF461 SNP Nonsense_Mutation 19 37129791 G A 45 55 BRCA TCGA-A7-A26H ZNF461 SNP Silent 19 37129879 G C 45 48 BRCA TCGA-A7-A26H ZNF461 SNP Nonsense_Mutation 19 37130138 G C 45 61 BRCA TCGA-A7-A26H ZNF461 SNP Missense_Mutation 19 37130379 G C 33 51 BRCA TCGA-A7-A26H ZNF701 SNP Missense_Mutation 19 53086613 G C 41 53 BRCA TCGA-A7-A26H OSCAR SNP Missense_Mutation 19 54598516 C G 32 58 BRCA TCGA-A7-A26H LILRB2 SNP Silent 19 54780306 C T 32 52 BRCA TCGA-A7-A26H NLRP7 SNP Silent 19 55451233 G A 40 47 BRCA TCGA-A7-A26H FMNL2 SNP Missense_Mutation 2 153496517 C T 32 57 BRCA TCGA-A7-A26H PRPF40A SNP Missense_Mutation 2 153533228 A C 8 72 BRCA TCGA-A7-A26H LRP2 SNP Missense_Mutation 2 170044543 C T 31 68 BRCA TCGA-A7-A26H IDH1 SNP Silent 2 209113243 C T 29 76 BRCA TCGA-A7-A26H MAP2 SNP Silent 2 210558835 T C 52 26 BRCA TCGA-A7-A26H CCDC108 SNP Silent 2 219895964 C T 26 54 BRCA TCGA-A7-A26H ALMS1 SNP Nonsense_Mutation 2 73799946 G T 33 77 BRCA TCGA-A7-A26H PCIF1 SNP Silent 20 44574946 C T 31 46 BRCA TCGA-A7-A26H PCIF1 SNP Missense_Mutation 20 44576059 C G 30 82 BRCA TCGA-A7-A26H NCOA3 SNP Missense_Mutation 20 46271054 C T 32 67 BRCA TCGA-A7-A26H B4GALT5 SNP Missense_Mutation 20 48260137 C G 29 68 BRCA TCGA-A7-A26H COL6A1 SNP Missense_Mutation 21 47402592 G T 40 95 BRCA TCGA-A7-A26H LGALS1 SNP Missense_Mutation 22 38073045 G A 37 55 BRCA TCGA-A7-A26H TNRC6B SNP Missense_Mutation 22 40704525 C T 32 87 BRCA TCGA-A7-A26H ALG13 SNP Splice_site 23 110970673 G T 39 70 BRCA TCGA-A7-A26H SMARCA1 SNP Missense_Mutation 23 128602783 C A 22 94 BRCA TCGA-A7-A26H L1CAM SNP Silent 23 153129444 G A 37 45 BRCA TCGA-A7-A26H ATP6AP1 SNP Silent 23 153662003 G A 45 62 BRCA TCGA-A7-A26H SCML1 SNP Silent 23 17768235 C T 29 24 BRCA TCGA-A7-A26H TSPYL2 SNP Missense_Mutation 23 53114174 C T 23 71 BRCA TCGA-A7-A26H PGK1 SNP Silent 23 77369391 G A 47 83 BRCA TCGA-A7-A26H KAL1 SNP Splice_Site 23 8553307 C A 18 87 BRCA TCGA-A7-A26H PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A7-A26H CTNNB1 SNP Missense_Mutation 3 41280699 G A 45 100 BRCA TCGA-A7-A26H BOD1L1 SNP Missense_Mutation 4 13605856 C G 32 77 BRCA TCGA-A7-A26H FNIP2 SNP Silent 4 159791486 G A 33 47 BRCA TCGA-A7-A26H CRMP1 SNP Splice_site 4 5830394 G A 38 95 BRCA TCGA-A7-A26H PCDHA9 SNP Missense_Mutation 5 140228399 G A 41 76 BRCA TCGA-A7-A26H PCDHB4 SNP Nonsense_Mutation 5 140503864 G T 45 94 BRCA TCGA-A7-A26H FAM105B SNP Silent 5 14693019 C G 32 52 BRCA TCGA-A7-A26H GFPT2 SNP Silent 5 179757778 C G 29 72 BRCA TCGA-A7-A26H SLC22A16 SNP Silent 6 110768127 C T 19 27 BRCA TCGA-A7-A26H IL20RA SNP Nonsense_Mutation 6 137330612 C A 32 54 BRCA TCGA-A7-A26H IGF2R SNP Silent 6 160461698 C T 32 53 BRCA TCGA-A7-A26H ZSCAN23 SNP Silent 6 28403768 C T 25 59 BRCA TCGA-A7-A26H COL9A1 SNP Missense_Mutation 6 70948982 A T 16 62 BRCA TCGA-A7-A26H C7orf50 SNP Missense_Mutation 7 1166897 G C 41 49 BRCA TCGA-A7-A26H LRGUK SNP Silent 7 133863335 G A 45 78 BRCA TCGA-A7-A26H HIPK2 SNP Missense_Mutation 7 139299077 C G 29 100 BRCA TCGA-A7-A26H ABCF2 SNP Missense_Mutation 7 150916170 C G 32 95 BRCA TCGA-A7-A26H GRM3 SNP Silent 7 86415885 G A 45 62 BRCA TCGA-A7-A26H EMC2 SNP Missense_Mutation 8 109462671 G A 45 86 BRCA TCGA-A7-A26H CHD7 SNP Missense_Mutation 8 61765855 G C 33 68 BRCA TCGA-A7-A26H GABBR2 SNP Missense_Mutation 9 101235526 G A 39 69 BRCA TCGA-A7-A26H RGS3 SNP Nonsense_Mutation 9 116247927 C T 29 62 BRCA TCGA-A7-A26H DENND1A SNP Missense_Mutation 9 126345542 C G 32 72 BRCA TCGA-A7-A26I C1orf85 SNP Missense_Mutation 1 156263310 C T 26 68 BRCA TCGA-A7-A26I COPA SNP Missense_Mutation 1 160264342 G A 33 71 BRCA TCGA-A7-A26I C10orf2 SNP Missense_Mutation 10 102753070 G C 45 100 BRCA TCGA-A7-A26I CCDC172 SNP Missense_Mutation 10 118117402 A C 9 80 BRCA TCGA-A7-A26I DMBT1 SNP Silent 10 124351807 C A 22 46 BRCA TCGA-A7-A26I ADARB2 SNP Missense_Mutation 10 1405909 C G 18 85 BRCA TCGA-A7-A26I DRGX SNP Missense_Mutation 10 50594777 G T 43 96 BRCA TCGA-A7-A26I TNKS2 SNP Silent 10 93572900 A G 11 47 BRCA TCGA-A7-A26I NELL1 SNP Missense_Mutation 11 20699549 C T 24 49 BRCA TCGA-A7-A26I FCHSD2 SNP Splice_site 11 72552500 G A 40 46 BRCA TCGA-A7-A26I ALKBH2 SNP Missense_Mutation 12 109530530 T C 54 50 BRCA TCGA-A7-A26I ARHGAP9 SNP Missense_Mutation 12 57873203 G T 48 69 BRCA TCGA-A7-A26I CLYBL SNP Missense_Mutation 13 100425236 G C 48 94 BRCA TCGA-A7-A26I ANKRD20A9P SNP Silent 13 19392413 C T 20 62 BRCA TCGA-A7-A26I GOLGA6L1 DEL In_Frame_Del 15 22742655 AGG - 3 51 BRCA TCGA-A7-A26I NPAP1 SNP Missense_Mutation 15 24922617 G A 36 61 BRCA TCGA-A7-A26I HERC2 SNP Missense_Mutation 15 28483866 T C 57 50 BRCA TCGA-A7-A26I THAP10 SNP Missense_Mutation 15 71184461 A T 11 54 BRCA TCGA-A7-A26I ZNF500 SNP Missense_Mutation 16 4802807 G A 41 77 BRCA TCGA-A7-A26I FLOT2 SNP Missense_Mutation 17 27211282 C A 23 70 BRCA TCGA-A7-A26I FMNL1 SNP Missense_Mutation 17 43321319 C T 23 64 BRCA TCGA-A7-A26I TRIM25 SNP Missense_Mutation 17 54969350 C T 23 84 BRCA TCGA-A7-A26I TP53 SNP Missense_Mutation 17 7577141 C T 30 95 BRCA TCGA-A7-A26I MOCOS SNP Missense_Mutation 18 33785106 C A 32 66 BRCA TCGA-A7-A26I SYT4 SNP Missense_Mutation 18 40851784 C T 23 100 BRCA TCGA-A7-A26I ZNF681 SNP Missense_Mutation 19 23927048 G A 45 51 BRCA TCGA-A7-A26I LGALS14 SNP Nonsense_Mutation 19 40199876 C T 31 50 BRCA TCGA-A7-A26I POTEF SNP Missense_Mutation 2 130833036 T C 55 56 BRCA TCGA-A7-A26I TTN SNP Missense_Mutation 2 179615822 T A 49 48 BRCA TCGA-A7-A26I TMEM17 SNP Silent 2 62729608 C T 18 49 BRCA TCGA-A7-A26I UBASH3A SNP Missense_Mutation 21 43829605 C T 19 73 BRCA TCGA-A7-A26I OCRL SNP Missense_Mutation 23 128722977 G C 39 74 BRCA TCGA-A7-A26I ZNF185 SNP Missense_Mutation 23 152128305 G A 35 38 BRCA TCGA-A7-A26I PPEF1 SNP Missense_Mutation 23 18843873 A C 8 71 BRCA TCGA-A7-A26I BRWD3 SNP Missense_Mutation 23 79937970 G T 46 68 BRCA TCGA-A7-A26I PEX5L SNP Missense_Mutation 3 179605499 G A 37 86 BRCA TCGA-A7-A26I SDHAP1 SNP Splice_Site 3 195713476 C A 20 52 BRCA TCGA-A7-A26I NT5DC2 SNP Splice_Site 3 52561308 A C 14 92 BRCA TCGA-A7-A26I CEP135 SNP Missense_Mutation 4 56846363 C T 27 49 BRCA TCGA-A7-A26I MUC12 SNP Missense_Mutation 7 100644027 C A 22 51 BRCA TCGA-A7-A26I GGCT SNP Missense_Mutation 7 30544259 C A 23 91 BRCA TCGA-A7-A26I CHD7 SNP Missense_Mutation 8 61773610 C T 30 63 BRCA TCGA-A7-A26I FRMD3 SNP Missense_Mutation 9 85863339 C T 29 86 BRCA TCGA-A7-A26J PROK1 SNP Missense_Mutation 1 110996692 A C 6 87 BRCA TCGA-A7-A26J FAM72B SNP Silent 1 120839839 T C 53 51 BRCA TCGA-A7-A26J PRAMEF4 SNP Silent 1 12939782 A G 5 47 BRCA TCGA-A7-A26J OMA1 SNP Missense_Mutation 1 58946709 C T 21 56 BRCA TCGA-A7-A26J PTPRE SNP Missense_Mutation 10 129845722 C T 24 56 BRCA TCGA-A7-A26J PRKCQ SNP Silent 10 6528089 G T 46 100 BRCA TCGA-A7-A26J MS4A2 SNP Silent 11 59861502 C T 32 50 BRCA TCGA-A7-A26J INPPL1 SNP Missense_Mutation 11 71946958 A G 11 67 BRCA TCGA-A7-A26J CPNE8 SNP Nonsense_Mutation 12 39079360 G T 48 54 BRCA TCGA-A7-A26J DLST SNP Splice_site 14 75352289 G T 43 68 BRCA TCGA-A7-A26J ASIC2 SNP Missense_Mutation 17 32483404 C T 19 52 BRCA TCGA-A7-A26J DPP10 SNP Missense_Mutation 2 116101439 C T 32 53 BRCA TCGA-A7-A26J COL5A2 SNP Missense_Mutation 2 189918668 G C 44 71 BRCA TCGA-A7-A26J TOX2 SNP Missense_Mutation 20 42683025 G A 38 44 BRCA TCGA-A7-A26J PTGIS SNP Missense_Mutation 20 48124536 T G 54 51 BRCA TCGA-A7-A26J DEPDC5 SNP Splice_site 22 32293469 T A 58 91 BRCA TCGA-A7-A26J USP9X SNP Missense_Mutation 23 41082490 C G 28 96 BRCA TCGA-A7-A26J FLNB SNP Missense_Mutation 3 58084492 C A 18 56 BRCA TCGA-A7-A26J ROBO2 SNP Missense_Mutation 3 77611806 C T 32 89 BRCA TCGA-A7-A26J IL17RC SNP Missense_Mutation 3 9959658 T G 59 72 BRCA TCGA-A7-A26J PCDH1 SNP Nonsense_Mutation 5 141244045 G T 48 60 BRCA TCGA-A7-A26J HIST1H3G SNP Missense_Mutation 6 26271575 C T 18 96 BRCA TCGA-A7-A26J EYS SNP Silent 6 65303044 T G 57 46 BRCA TCGA-A7-A26J FAM86B1 SNP Missense_Mutation 8 12044010 C T 31 64 BRCA TCGA-A7-A26J NR6A1 SNP Nonsense_Mutation 9 127285049 C A 30 94 BRCA TCGA-A8-A06N TRIM33 SNP Missense_Mutation 1 115006984 G A 39 80 BRCA TCGA-A8-A06N FLG SNP Silent 1 152283965 G T 38 49 BRCA TCGA-A8-A06N RGS8 SNP Silent 1 182616032 G C 43 56 BRCA TCGA-A8-A06N ARID1A INS Frame_Shift_Ins 1 27101427 - TA 32 97 BRCA TCGA-A8-A06N OR8G2 SNP Missense_Mutation 11 124096150 C G 29 44 BRCA TCGA-A8-A06N LRRK2 SNP Missense_Mutation 12 40745381 C T 19 62 BRCA TCGA-A8-A06N SCN8A SNP Missense_Mutation 12 52056740 G T 41 75 BRCA TCGA-A8-A06N SACS SNP Missense_Mutation 13 23910010 C A 32 97 BRCA TCGA-A8-A06N OXGR1 SNP Missense_Mutation 13 97639047 C G 23 55 BRCA TCGA-A8-A06N FOXA1 SNP Missense_Mutation 14 38061313 C T 29 93 BRCA TCGA-A8-A06N FMN1 SNP Silent 15 33256332 A G 8 57 BRCA TCGA-A8-A06N SRRM2 SNP Missense_Mutation 16 2816906 C T 24 77 BRCA TCGA-A8-A06N HYDIN SNP Splice_Site 16 71100838 T C 53 53 BRCA TCGA-A8-A06N CD300LF SNP Missense_Mutation 17 72699195 G T 44 49 BRCA TCGA-A8-A06N ZNF396 SNP Silent 18 32949212 A G 16 50 BRCA TCGA-A8-A06N FCGBP SNP Silent 19 40367787 G A 38 51 BRCA TCGA-A8-A06N CCDC8 SNP Missense_Mutation 19 46915313 G A 38 47 BRCA TCGA-A8-A06N ZNF525 SNP Silent 19 53884897 C T 19 50 BRCA TCGA-A8-A06N PGAP1 SNP Missense_Mutation 2 197707464 T A 59 67 BRCA TCGA-A8-A06N DYSF SNP Silent 2 71828631 G A 39 53 BRCA TCGA-A8-A06N RBFOX2 SNP Missense_Mutation 22 36142022 G A 42 85 BRCA TCGA-A8-A06N TTC14 SNP Missense_Mutation 3 180320056 C T 23 63 BRCA TCGA-A8-A06N EHHADH SNP Silent 3 184911124 G A 38 53 BRCA TCGA-A8-A06N RNF168 SNP Missense_Mutation 3 196199408 G C 35 56 BRCA TCGA-A8-A06N CEP120 SNP Missense_Mutation 5 122724169 T G 49 41 BRCA TCGA-A8-A06N PCDHA9 SNP Missense_Mutation 5 140229518 C T 27 42 BRCA TCGA-A8-A06N PCDHGB3 SNP Missense_Mutation 5 140751900 C T 27 48 BRCA TCGA-A8-A06N SYNPO SNP Missense_Mutation 5 150029357 G A 38 98 BRCA TCGA-A8-A06N MYO10 SNP Missense_Mutation 5 16701433 C T 23 84 BRCA TCGA-A8-A06N CDH10 SNP Silent 5 24491920 G T 33 61 BRCA TCGA-A8-A06N RXFP3 SNP Missense_Mutation 5 33937261 C T 27 100 BRCA TCGA-A8-A06N LOC100288496 SNP Missense_Mutation 7 304021 C G 27 45 BRCA TCGA-A8-A06N E2F5 SNP Missense_Mutation 8 86121476 G A 40 85 BRCA TCGA-A8-A06N ZNF782 SNP Nonsense_Mutation 9 99580378 C A 30 88 BRCA TCGA-A8-A06O ANKRD34A SNP Silent 1 145473724 C T 19 40 BRCA TCGA-A8-A06O MFSD4 SNP Missense_Mutation 1 205568262 T C 52 63 BRCA TCGA-A8-A06O KCNH1 SNP Missense_Mutation 1 210948781 C T 23 100 BRCA TCGA-A8-A06O TCEB3 SNP Missense_Mutation 1 24082459 C T 27 78 BRCA TCGA-A8-A06O KDM4A SNP Missense_Mutation 1 44133570 C T 21 100 BRCA TCGA-A8-A06O LARP4B DEL Frame_Shift_Del 10 876875 T - 49 63 BRCA TCGA-A8-A06O LARP4B SNP Missense_Mutation 10 876876 A C 13 49 BRCA TCGA-A8-A06O PTEN DEL Frame_Shift_Del 10 89720707 CTCAGAAA - 24 57 BRCA TCGA-A8-A06O CTR9 SNP Missense_Mutation 11 10791787 C G 25 84 BRCA TCGA-A8-A06O DCDC1 SNP Silent 11 31131822 G A 44 44 BRCA TCGA-A8-A06O OR9Q1 SNP Silent 11 57947558 C A 32 47 BRCA TCGA-A8-A06O TBX3 DEL In_Frame_Del 12 115118704 TGT - 51 91 BRCA TCGA-A8-A06O ABCB9 SNP Missense_Mutation 12 123433275 C T 19 63 BRCA TCGA-A8-A06O FAIM2 SNP Silent 12 50291851 G A 40 43 BRCA TCGA-A8-A06O TIMELESS SNP Missense_Mutation 12 56817240 C T 19 58 BRCA TCGA-A8-A06O FLT3 SNP Silent 13 28588649 C T 26 47 BRCA TCGA-A8-A06O RDH12 SNP Missense_Mutation 14 68192813 T C 51 65 BRCA TCGA-A8-A06O BLM SNP Missense_Mutation 15 91304296 G A 45 67 BRCA TCGA-A8-A06O BLM SNP Nonsense_Mutation 15 91304368 G T 41 73 BRCA TCGA-A8-A06O WWP2 SNP Missense_Mutation 16 69970309 G A 39 87 BRCA TCGA-A8-A06O TNS4 SNP Missense_Mutation 17 38645003 C A 22 50 BRCA TCGA-A8-A06O KRT15 SNP Missense_Mutation 17 39673185 C T 19 76 BRCA TCGA-A8-A06O STAT5A SNP Nonsense_Mutation 17 40451780 C T 21 72 BRCA TCGA-A8-A06O PRKCA SNP Missense_Mutation 17 64641530 G A 40 98 BRCA TCGA-A8-A06O ACADVL SNP Missense_Mutation 17 7123807 C T 21 47 BRCA TCGA-A8-A06O ST6GALNAC1 SNP Missense_Mutation 17 74621554 T C 49 75 BRCA TCGA-A8-A06O TP53 SNP Missense_Mutation 17 7577102 C T 22 82 BRCA TCGA-A8-A06O CYP4F12 SNP Silent 19 15794459 C T 19 37 BRCA TCGA-A8-A06O NWD1 SNP Missense_Mutation 19 16902312 C T 19 55 BRCA TCGA-A8-A06O FAM125A SNP Missense_Mutation 19 17534576 T C 50 72 BRCA TCGA-A8-A06O GPATCH1 SNP Missense_Mutation 19 33587282 G C 44 48 BRCA TCGA-A8-A06O ZNF571 SNP Missense_Mutation 19 38055754 C A 24 71 BRCA TCGA-A8-A06O CYP2B7P1 SNP Silent 19 41445067 G A 43 52 BRCA TCGA-A8-A06O CCDC155 SNP Missense_Mutation 19 49897775 C T 23 50 BRCA TCGA-A8-A06O ZNF649 SNP Missense_Mutation 19 52395062 T G 62 52 BRCA TCGA-A8-A06O PROKR1 SNP Silent 2 68882405 C T 19 55 BRCA TCGA-A8-A06O DNAH6 DEL Frame_Shift_Del 2 84800662 C - 29 53 BRCA TCGA-A8-A06O CST3 SNP Missense_Mutation 20 23614578 G A 37 45 BRCA TCGA-A8-A06O SMOX SNP Silent 20 4163035 C A 25 47 BRCA TCGA-A8-A06O SEMG2 SNP Missense_Mutation 20 43851148 G A 40 48 BRCA TCGA-A8-A06O HAO1 SNP Missense_Mutation 20 7915232 G A 37 94 BRCA TCGA-A8-A06O CECR5 SNP Missense_Mutation 22 17630576 T G 54 47 BRCA TCGA-A8-A06O PRR5 SNP Missense_Mutation 22 45075701 C A 17 52 BRCA TCGA-A8-A06O GTSE1 SNP Missense_Mutation 22 46712099 G C 41 63 BRCA TCGA-A8-A06O GTSE1 SNP Missense_Mutation 22 46712226 G A 33 51 BRCA TCGA-A8-A06O SLC6A14 SNP Missense_Mutation 23 115584214 G T 42 95 BRCA TCGA-A8-A06O FAM58A SNP Splice_Site 23 152860004 C A 18 94 BRCA TCGA-A8-A06O GYG2 SNP Missense_Mutation 23 2773101 C T 23 88 BRCA TCGA-A8-A06O OTC SNP Splice_site 23 38212026 G A 39 54 BRCA TCGA-A8-A06O SLC7A3 SNP Missense_Mutation 23 70145947 C A 26 57 BRCA TCGA-A8-A06O TBL1X SNP Missense_Mutation 23 9661244 C T 19 80 BRCA TCGA-A8-A06O FGD5 SNP Missense_Mutation 3 14862541 C T 27 60 BRCA TCGA-A8-A06O TPRG1 SNP Missense_Mutation 3 188925244 C T 32 67 BRCA TCGA-A8-A06O PI4K2B SNP Missense_Mutation 4 25256819 T C 57 94 BRCA TCGA-A8-A06O CCNG2 DEL In_Frame_Del 4 78081937 GAA - 45 99 BRCA TCGA-A8-A06O DNAH5 SNP Silent 5 13719037 G A 40 47 BRCA TCGA-A8-A06O PCDHA1 SNP Missense_Mutation 5 140167380 G A 38 62 BRCA TCGA-A8-A06O PCDHA13 SNP Silent 5 140263380 G A 39 45 BRCA TCGA-A8-A06O PCDHB8 SNP Missense_Mutation 5 140559119 G A 38 54 BRCA TCGA-A8-A06O PCDHB9 SNP Missense_Mutation 5 140567865 G A 39 54 BRCA TCGA-A8-A06O ACTBL2 SNP Missense_Mutation 5 56777552 A C 12 74 BRCA TCGA-A8-A06O ACTBL2 SNP Missense_Mutation 5 56777554 T G 64 67 BRCA TCGA-A8-A06O MAST4 SNP Missense_Mutation 5 66461473 A C 3 66 BRCA TCGA-A8-A06O UBE3D SNP Missense_Mutation 6 83767586 C T 30 79 BRCA TCGA-A8-A06O ZNF292 DEL Frame_Shift_Del 6 87969506 AG - 7 54 BRCA TCGA-A8-A06O BACH2 SNP Missense_Mutation 6 90642332 G A 38 72 BRCA TCGA-A8-A06O C7orf65 SNP Missense_Mutation 7 47694923 C T 23 60 BRCA TCGA-A8-A06O PON1 SNP Nonsense_Mutation 7 94944672 G T 45 96 BRCA TCGA-A8-A06O FAM78A SNP Missense_Mutation 9 134136507 C A 23 96 BRCA TCGA-A8-A06O TUBBP5 SNP Missense_Mutation 9 141070851 A G 11 72 BRCA TCGA-A8-A06O KIF27 SNP Missense_Mutation 9 86482718 G A 40 70 BRCA TCGA-A8-A06P NFASC SNP Missense_Mutation 1 204948673 G A 37 70 BRCA TCGA-A8-A06P EPHB2 SNP Missense_Mutation 1 23233419 T A 51 90 BRCA TCGA-A8-A06P VN1R5 SNP Silent 1 247420075 C T 29 69 BRCA TCGA-A8-A06P SMTNL1 SNP Missense_Mutation 11 57311158 C A 25 62 BRCA TCGA-A8-A06P CSAD SNP Silent 12 53552403 G A 40 32 BRCA TCGA-A8-A06P AAAS SNP Missense_Mutation 12 53708115 A G 12 85 BRCA TCGA-A8-A06P NACA SNP Missense_Mutation 12 57118242 C T 29 94 BRCA TCGA-A8-A06P MYCBP2 SNP Missense_Mutation 13 77671946 T C 51 89 BRCA TCGA-A8-A06P EDDM3A SNP Missense_Mutation 14 21216114 C A 30 55 BRCA TCGA-A8-A06P ATP9B SNP Missense_Mutation 18 77137328 T G 54 75 BRCA TCGA-A8-A06P PIP5K1C SNP Missense_Mutation 19 3656491 T C 57 73 BRCA TCGA-A8-A06P A1BG SNP Missense_Mutation 19 58864307 C A 28 55 BRCA TCGA-A8-A06P TRIM28 SNP Silent 19 59061549 C T 30 49 BRCA TCGA-A8-A06P C3 SNP Missense_Mutation 19 6679172 G A 40 52 BRCA TCGA-A8-A06P ZNF133 SNP Missense_Mutation 20 18296577 T G 55 72 BRCA TCGA-A8-A06P GPR101 SNP Missense_Mutation 23 136112380 G C 47 59 BRCA TCGA-A8-A06P PTCHD1 SNP Silent 23 23412005 C T 22 65 BRCA TCGA-A8-A06P POLQ SNP Missense_Mutation 3 121207309 A G 15 88 BRCA TCGA-A8-A06P ALDH1L1 SNP Silent 3 125824621 G A 40 49 BRCA TCGA-A8-A06P PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-A8-A06P C3orf43 SNP Missense_Mutation 3 196234930 C T 24 67 BRCA TCGA-A8-A06P LAMB2 SNP Missense_Mutation 3 49158663 T A 55 91 BRCA TCGA-A8-A06P AADAT SNP Silent 4 170988516 G A 40 47 BRCA TCGA-A8-A06P PCDHB13 SNP Missense_Mutation 5 140595329 C T 27 56 BRCA TCGA-A8-A06P MAP3K1 INS Frame_Shift_Ins 5 56178399 - T 29 56 BRCA TCGA-A8-A06P MAP3K1 SNP Missense_Mutation 5 56178400 A G 5 71 BRCA TCGA-A8-A06P MAP3K1 DEL Frame_Shift_Del 5 56189387 C - 30 58 BRCA TCGA-A8-A06P TCF19 INS Frame_Shift_Ins 6 31127397 - A 47 60 BRCA TCGA-A8-A06P SYNCRIP SNP Nonsense_Mutation 6 86350199 G A 45 72 BRCA TCGA-A8-A06P MLL3 SNP Splice_site 7 151904386 T C 55 58 BRCA TCGA-A8-A06P GDAP1 SNP Missense_Mutation 8 75276444 A G 2 75 BRCA TCGA-A8-A06P PLIN2 SNP Missense_Mutation 9 19121142 C T 27 95 BRCA TCGA-A8-A06Q KIF1B SNP Missense_Mutation 1 10412697 C T 31 58 BRCA TCGA-A8-A06Q PTPN22 SNP Missense_Mutation 1 114376945 G T 36 58 BRCA TCGA-A8-A06Q BCAS2 SNP Silent 1 115113329 C T 32 76 BRCA TCGA-A8-A06Q TMEM88B SNP Nonsense_Mutation 1 1356248 G A 41 50 BRCA TCGA-A8-A06Q SETDB1 SNP Missense_Mutation 1 150921914 C A 32 82 BRCA TCGA-A8-A06Q RORC SNP Silent 1 151787669 C T 29 50 BRCA TCGA-A8-A06Q FLG SNP Nonsense_Mutation 1 152282641 G C 45 63 BRCA TCGA-A8-A06Q FLG SNP Nonsense_Mutation 1 152282818 G C 45 55 BRCA TCGA-A8-A06Q ASH1L SNP Missense_Mutation 1 155448175 C G 29 76 BRCA TCGA-A8-A06Q GON4L SNP Silent 1 155783569 G A 45 47 BRCA TCGA-A8-A06Q UBQLN4 SNP Missense_Mutation 1 156011378 T G 59 24 BRCA TCGA-A8-A06Q CD1E SNP Nonsense_Mutation 1 158326632 G A 41 62 BRCA TCGA-A8-A06Q FMO4 SNP Missense_Mutation 1 171306533 G C 41 65 BRCA TCGA-A8-A06Q FAM5B SNP Silent 1 177245422 C T 31 48 BRCA TCGA-A8-A06Q SMG7 SNP Missense_Mutation 1 183511387 G A 37 79 BRCA TCGA-A8-A06Q TMCO4 SNP Silent 1 20097810 C A 29 48 BRCA TCGA-A8-A06Q NAV1 SNP Missense_Mutation 1 201751421 C T 31 100 BRCA TCGA-A8-A06Q SLC41A1 SNP Missense_Mutation 1 205767101 C T 31 62 BRCA TCGA-A8-A06Q KCTD3 SNP Missense_Mutation 1 215785242 G C 33 99 BRCA TCGA-A8-A06Q BPNT1 SNP Missense_Mutation 1 220242756 G A 41 99 BRCA TCGA-A8-A06Q ZMYM4 SNP Nonsense_Mutation 1 35835660 C T 29 73 BRCA TCGA-A8-A06Q BTBD19 SNP Missense_Mutation 1 45279142 G A 33 66 BRCA TCGA-A8-A06Q TOE1 SNP Silent 1 45807208 G A 47 53 BRCA TCGA-A8-A06Q ZYG11A SNP Missense_Mutation 1 53323171 G A 33 76 BRCA TCGA-A8-A06Q ZYG11A SNP Silent 1 53347220 C G 32 45 BRCA TCGA-A8-A06Q ANGPTL3 SNP Missense_Mutation 1 63064371 T C 64 79 BRCA TCGA-A8-A06Q INSL5 SNP Nonsense_Mutation 1 67263791 T A 62 50 BRCA TCGA-A8-A06Q MIER1 SNP Missense_Mutation 1 67450308 G C 45 83 BRCA TCGA-A8-A06Q HABP2 SNP Missense_Mutation 10 115340443 C T 29 88 BRCA TCGA-A8-A06Q FAM171A1 SNP Missense_Mutation 10 15255199 C G 32 44 BRCA TCGA-A8-A06Q FAM171A1 SNP Missense_Mutation 10 15255691 C A 32 78 BRCA TCGA-A8-A06Q MLLT10 SNP Missense_Mutation 10 21962492 C T 29 60 BRCA TCGA-A8-A06Q SPAG6 SNP Missense_Mutation 10 22678164 C T 19 52 BRCA TCGA-A8-A06Q ZEB1 SNP Missense_Mutation 10 31815999 G A 43 52 BRCA TCGA-A8-A06Q NET1 SNP Missense_Mutation 10 5498724 G A 37 57 BRCA TCGA-A8-A06Q KIAA1279 SNP Missense_Mutation 10 70776092 G C 45 100 BRCA TCGA-A8-A06Q FAM22A SNP Missense_Mutation 10 88992675 C T 19 56 BRCA TCGA-A8-A06Q TM9SF3 SNP Missense_Mutation 10 98311022 C T 29 83 BRCA TCGA-A8-A06Q ANGPTL5 SNP Missense_Mutation 11 101777891 C T 29 53 BRCA TCGA-A8-A06Q GRIA4 SNP Missense_Mutation 11 105781241 G C 33 53 BRCA TCGA-A8-A06Q ZBTB16 SNP Missense_Mutation 11 113935256 G A 37 83 BRCA TCGA-A8-A06Q C11orf45 DEL Frame_Shift_Del 11 128773376 T - 60 42 BRCA TCGA-A8-A06Q ABTB2 SNP Missense_Mutation 11 34182470 C T 31 61 BRCA TCGA-A8-A06Q CHST1 SNP Missense_Mutation 11 45671732 G A 39 66 BRCA TCGA-A8-A06Q OR52A4 SNP Missense_Mutation 11 5142091 G C 36 56 BRCA TCGA-A8-A06Q DAK SNP Missense_Mutation 11 61111640 G C 41 65 BRCA TCGA-A8-A06Q ZBTB3 SNP Missense_Mutation 11 62520830 C T 25 94 BRCA TCGA-A8-A06Q DNHD1 SNP Missense_Mutation 11 6585612 C T 29 78 BRCA TCGA-A8-A06Q PACS1 SNP Missense_Mutation 11 66006688 G A 37 74 BRCA TCGA-A8-A06Q DPP3 SNP Missense_Mutation 11 66264824 G A 41 74 BRCA TCGA-A8-A06Q RPS6KB2 SNP Missense_Mutation 11 67202530 C G 32 52 BRCA TCGA-A8-A06Q PAAF1 SNP Silent 11 73611344 G A 45 63 BRCA TCGA-A8-A06Q SCUBE2 SNP Missense_Mutation 11 9088307 C T 31 53 BRCA TCGA-A8-A06Q KDM4E SNP Nonsense_Mutation 11 94758974 C T 29 85 BRCA TCGA-A8-A06Q KIAA1033 SNP Missense_Mutation 12 105531752 C T 29 100 BRCA TCGA-A8-A06Q CORO1C SNP Missense_Mutation 12 109072151 G C 33 97 BRCA TCGA-A8-A06Q ANAPC7 SNP Silent 12 110819687 C T 29 52 BRCA TCGA-A8-A06Q SETD1B SNP Silent 12 122248732 G A 33 62 BRCA TCGA-A8-A06Q GPRC5A SNP Missense_Mutation 12 13065406 C A 30 79 BRCA TCGA-A8-A06Q P2RX2 SNP Missense_Mutation 12 133198305 C T 29 55 BRCA TCGA-A8-A06Q ITPR2 SNP Silent 12 26551828 C T 32 74 BRCA TCGA-A8-A06Q ITPR2 SNP Missense_Mutation 12 26568266 C T 29 86 BRCA TCGA-A8-A06Q CACNA1C SNP Missense_Mutation 12 2705075 C T 19 71 BRCA TCGA-A8-A06Q REP15 SNP Nonsense_Mutation 12 27850132 G T 33 63 BRCA TCGA-A8-A06Q CCDC91 SNP Missense_Mutation 12 28603099 G C 33 70 BRCA TCGA-A8-A06Q EIF4B SNP Missense_Mutation 12 53413733 G C 33 82 BRCA TCGA-A8-A06Q SRGAP1 SNP Missense_Mutation 12 64488742 G A 41 100 BRCA TCGA-A8-A06Q CD4 SNP Missense_Mutation 12 6923397 G A 33 30 BRCA TCGA-A8-A06Q METTL21C SNP Missense_Mutation 13 103343293 G C 33 66 BRCA TCGA-A8-A06Q PARP4 SNP Missense_Mutation 13 25064849 C T 32 78 BRCA TCGA-A8-A06Q PABPC3 SNP Missense_Mutation 13 25671591 C G 30 56 BRCA TCGA-A8-A06Q CSNK1A1L SNP Missense_Mutation 13 37678900 C T 32 80 BRCA TCGA-A8-A06Q RCBTB2 SNP Missense_Mutation 13 49086299 C G 22 100 BRCA TCGA-A8-A06Q CLN5 SNP Missense_Mutation 13 77574712 T C 53 93 BRCA TCGA-A8-A06Q MYCBP2 SNP Nonsense_Mutation 13 77651360 G A 47 100 BRCA TCGA-A8-A06Q OR4K14 SNP Missense_Mutation 14 20483041 G T 33 52 BRCA TCGA-A8-A06Q NIN SNP Nonsense_Mutation 14 51223742 G A 45 67 BRCA TCGA-A8-A06Q FAM161B SNP Silent 14 74412991 C T 29 38 BRCA TCGA-A8-A06Q COQ6 SNP Missense_Mutation 14 74424951 G T 45 80 BRCA TCGA-A8-A06Q ENSG00000188403 SNP Missense_Mutation 15 20170069 C G 30 55 BRCA TCGA-A8-A06Q LOC440243 SNP Missense_Mutation 15 23572602 T C 56 50 BRCA TCGA-A8-A06Q LTK SNP Silent 15 41797650 C T 29 54 BRCA TCGA-A8-A06Q FBN1 SNP Silent 15 48787333 G T 43 51 BRCA TCGA-A8-A06Q MYO5A SNP Missense_Mutation 15 52662392 C G 32 61 BRCA TCGA-A8-A06Q NARG2 SNP Missense_Mutation 15 60741569 C G 32 54 BRCA TCGA-A8-A06Q MAP2K5 DEL In_Frame_Del 15 67835751 TGGCGC - 59 52 BRCA TCGA-A8-A06Q C15orf39 SNP Silent 15 75498915 C T 32 49 BRCA TCGA-A8-A06Q CHD2 SNP Nonsense_Mutation 15 93499827 C T 29 97 BRCA TCGA-A8-A06Q ALDOA SNP Missense_Mutation 16 30080238 C T 29 99 BRCA TCGA-A8-A06Q NLRC3 SNP Missense_Mutation 16 3592723 G C 33 56 BRCA TCGA-A8-A06Q BRD7 SNP Missense_Mutation 16 50357560 C T 32 97 BRCA TCGA-A8-A06Q KIAA0182 SNP Missense_Mutation 16 85699765 G A 41 55 BRCA TCGA-A8-A06Q TRPV2 SNP Nonsense_Mutation 17 16327010 C T 25 57 BRCA TCGA-A8-A06Q SEZ6 SNP Silent 17 27308921 C T 29 60 BRCA TCGA-A8-A06Q SLFN14 SNP Missense_Mutation 17 33885048 A G 14 69 BRCA TCGA-A8-A06Q KRT222 SNP Missense_Mutation 17 38816288 C T 30 99 BRCA TCGA-A8-A06Q SNF8 SNP Missense_Mutation 17 47022045 C G 32 98 BRCA TCGA-A8-A06Q ABCA8 SNP Silent 17 66891114 C T 32 51 BRCA TCGA-A8-A06Q TP53 SNP Missense_Mutation 17 7577568 C T 17 93 BRCA TCGA-A8-A06Q DNAH2 SNP Missense_Mutation 17 7734627 G C 33 96 BRCA TCGA-A8-A06Q TIMM22 SNP Silent 17 904307 G C 37 48 BRCA TCGA-A8-A06Q ABR SNP Silent 17 962030 G C 45 58 BRCA TCGA-A8-A06Q CEP192 SNP Splice_Site 18 13099581 G A 44 76 BRCA TCGA-A8-A06Q SETBP1 SNP Missense_Mutation 18 42533287 G A 45 95 BRCA TCGA-A8-A06Q CNDP2 SNP Missense_Mutation 18 72178246 G C 37 100 BRCA TCGA-A8-A06Q TSHZ1 SNP Silent 18 72998610 C G 29 91 BRCA TCGA-A8-A06Q NDUFV2 SNP Missense_Mutation 18 9122601 C G 29 86 BRCA TCGA-A8-A06Q SMARCA4 SNP Missense_Mutation 19 11170790 G A 39 73 BRCA TCGA-A8-A06Q ELL SNP Missense_Mutation 19 18576723 G C 33 63 BRCA TCGA-A8-A06Q ZNF492 SNP Missense_Mutation 19 22847909 G A 45 50 BRCA TCGA-A8-A06Q ZNF536 INS Frame_Shift_Ins 19 31039333 - C 51 49 BRCA TCGA-A8-A06Q ZNF536 SNP Missense_Mutation 19 31039334 G A 45 62 BRCA TCGA-A8-A06Q GPATCH1 SNP Silent 19 33602733 G A 37 44 BRCA TCGA-A8-A06Q RBM42 SNP Missense_Mutation 19 36124592 G C 33 79 BRCA TCGA-A8-A06Q SIPA1L3 SNP Missense_Mutation 19 38655162 C G 30 95 BRCA TCGA-A8-A06Q LYPD5 SNP Missense_Mutation 19 44302730 C T 23 75 BRCA TCGA-A8-A06Q SPIB SNP Silent 19 50931497 C A 30 53 BRCA TCGA-A8-A06Q ZNF534 SNP Silent 19 52942228 G A 33 36 BRCA TCGA-A8-A06Q FAM71E2 SNP Missense_Mutation 19 55870549 C A 31 32 BRCA TCGA-A8-A06Q RPL36 SNP Missense_Mutation 19 5691557 C G 30 62 BRCA TCGA-A8-A06Q ZNF805 SNP Missense_Mutation 19 57764450 G A 41 49 BRCA TCGA-A8-A06Q ZNF549 SNP Missense_Mutation 19 58050005 C G 32 45 BRCA TCGA-A8-A06Q SH2D3A SNP Silent 19 6754088 C T 29 67 BRCA TCGA-A8-A06Q CLEC4M SNP Nonsense_Mutation 19 7832457 C G 29 51 BRCA TCGA-A8-A06Q ELANE SNP Missense_Mutation 19 853386 G A 37 72 BRCA TCGA-A8-A06Q ITGAV SNP Missense_Mutation 2 187511517 G A 45 59 BRCA TCGA-A8-A06Q MAP2 SNP Missense_Mutation 2 210559707 A G 8 45 BRCA TCGA-A8-A06Q LANCL1 SNP Missense_Mutation 2 211301071 C T 29 99 BRCA TCGA-A8-A06Q ABCA12 SNP Missense_Mutation 2 215831644 G C 41 100 BRCA TCGA-A8-A06Q CHRNG SNP Missense_Mutation 2 233406100 G A 37 99 BRCA TCGA-A8-A06Q UGT1A1 SNP Silent 2 234669446 C T 32 56 BRCA TCGA-A8-A06Q RBM44 SNP Missense_Mutation 2 238726892 C T 29 51 BRCA TCGA-A8-A06Q PER2 SNP Splice_Site 2 239181710 C T 19 94 BRCA TCGA-A8-A06Q CRIM1 SNP Missense_Mutation 2 36668460 G A 45 78 BRCA TCGA-A8-A06Q DHX57 SNP Missense_Mutation 2 39053665 C G 32 94 BRCA TCGA-A8-A06Q SLC4A5 SNP Missense_Mutation 2 74462323 C T 29 94 BRCA TCGA-A8-A06Q C2orf90 SNP Silent 2 905375 G T 38 48 BRCA TCGA-A8-A06Q DLGAP4 SNP Missense_Mutation 20 35128690 G A 45 94 BRCA TCGA-A8-A06Q RAB36 SNP Missense_Mutation 22 23503156 G A 39 51 BRCA TCGA-A8-A06Q ZC3H7B SNP Silent 22 41739504 G A 39 9 BRCA TCGA-A8-A06Q PLS3 SNP Missense_Mutation 23 114868366 G C 33 68 BRCA TCGA-A8-A06Q PLS3 SNP Missense_Mutation 23 114869259 G A 33 74 BRCA TCGA-A8-A06Q DOCK11 SNP Missense_Mutation 23 117752671 G A 45 95 BRCA TCGA-A8-A06Q SAGE1 SNP Missense_Mutation 23 134994976 A T 4 63 BRCA TCGA-A8-A06Q OFD1 SNP Missense_Mutation 23 13785326 G C 33 62 BRCA TCGA-A8-A06Q FAM47C SNP Missense_Mutation 23 37026644 G T 42 54 BRCA TCGA-A8-A06Q IQSEC2 SNP Silent 23 53276287 G A 37 41 BRCA TCGA-A8-A06Q SPIN2A SNP Missense_Mutation 23 57162736 G A 45 61 BRCA TCGA-A8-A06Q LOC100288788 SNP Missense_Mutation 23 65176771 C T 29 68 BRCA TCGA-A8-A06Q ITGB1BP2 SNP Missense_Mutation 23 70524437 C A 17 72 BRCA TCGA-A8-A06Q NHSL2 SNP Missense_Mutation 23 71358848 C A 28 60 BRCA TCGA-A8-A06Q DIAPH2 SNP Silent 23 96369847 G A 45 51 BRCA TCGA-A8-A06Q GHRL SNP Missense_Mutation 3 10331475 C T 32 61 BRCA TCGA-A8-A06Q CD200R1L SNP Missense_Mutation 3 112546390 G A 48 33 BRCA TCGA-A8-A06Q CCDC48 SNP Silent 3 128758634 C G 24 51 BRCA TCGA-A8-A06Q XPC SNP Silent 3 14190368 C T 17 52 BRCA TCGA-A8-A06Q NR2C2 SNP Silent 3 15055260 C T 29 56 BRCA TCGA-A8-A06Q PLCL2 SNP Missense_Mutation 3 17109478 T C 49 88 BRCA TCGA-A8-A06Q PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A06Q SLC4A7 SNP Missense_Mutation 3 27424666 G C 41 76 BRCA TCGA-A8-A06Q TRIM71 SNP Missense_Mutation 3 32932211 C A 29 58 BRCA TCGA-A8-A06Q TTC21A SNP Missense_Mutation 3 39156150 G A 41 40 BRCA TCGA-A8-A06Q C3orf77 SNP Missense_Mutation 3 44285586 G A 45 56 BRCA TCGA-A8-A06Q FAM208A SNP Missense_Mutation 3 56667593 C T 30 65 BRCA TCGA-A8-A06Q CENPE SNP Nonsense_Mutation 4 104064461 C A 29 58 BRCA TCGA-A8-A06Q INTU SNP Missense_Mutation 4 128554244 G A 33 61 BRCA TCGA-A8-A06Q GYPB SNP Missense_Mutation 4 144922404 C T 29 52 BRCA TCGA-A8-A06Q MAB21L2 SNP Missense_Mutation 4 151504703 C G 29 87 BRCA TCGA-A8-A06Q MAB21L2 SNP Missense_Mutation 4 151504936 C T 29 100 BRCA TCGA-A8-A06Q CCDC111 SNP Nonsense_Mutation 4 185593491 G T 41 55 BRCA TCGA-A8-A06Q TNIP2 SNP Silent 4 2747221 A T 5 45 BRCA TCGA-A8-A06Q DTHD1 SNP Missense_Mutation 4 36310067 G A 33 71 BRCA TCGA-A8-A06Q ZBTB49 SNP Silent 4 4301738 C T 26 51 BRCA TCGA-A8-A06Q FRYL SNP Missense_Mutation 4 48597671 C T 31 100 BRCA TCGA-A8-A06Q ADAMTS3 SNP Missense_Mutation 4 73205317 C T 30 71 BRCA TCGA-A8-A06Q PCDHA4 SNP Missense_Mutation 5 140186860 C G 29 71 BRCA TCGA-A8-A06Q PCDHA4 SNP Missense_Mutation 5 140187308 C T 32 58 BRCA TCGA-A8-A06Q CYFIP2 SNP Missense_Mutation 5 156746888 G A 40 100 BRCA TCGA-A8-A06Q EBF1 SNP Nonsense_Mutation 5 158135082 G C 45 99 BRCA TCGA-A8-A06Q AGXT2L2 SNP Missense_Mutation 5 177656971 T G 55 62 BRCA TCGA-A8-A06Q CLK4 SNP Missense_Mutation 5 178050303 C G 32 85 BRCA TCGA-A8-A06Q C5orf60 SNP Missense_Mutation 5 179069426 C T 27 54 BRCA TCGA-A8-A06Q SPEF2 SNP Silent 5 35814583 C T 30 49 BRCA TCGA-A8-A06Q PIK3R1 SNP Missense_Mutation 5 67586647 G C 33 91 BRCA TCGA-A8-A06Q PREP SNP Missense_Mutation 6 105726196 G C 45 76 BRCA TCGA-A8-A06Q TAAR5 SNP Missense_Mutation 6 132910300 C G 32 75 BRCA TCGA-A8-A06Q ADGB SNP Missense_Mutation 6 146993405 G A 45 61 BRCA TCGA-A8-A06Q ZNF184 SNP Missense_Mutation 6 27419990 C T 32 79 BRCA TCGA-A8-A06Q HIST1H2AJ SNP Silent 6 27782387 G A 37 41 BRCA TCGA-A8-A06Q BTBD9 SNP Missense_Mutation 6 38548069 G A 41 85 BRCA TCGA-A8-A06Q TMEM63B DEL Frame_Shift_Del 6 44122458 A - 7 53 BRCA TCGA-A8-A06Q TMEM63B DEL Frame_Shift_Del 6 44122461 G - 35 50 BRCA TCGA-A8-A06Q MUC17 SNP Missense_Mutation 7 100696407 G A 38 43 BRCA TCGA-A8-A06Q SH2B2 SNP Missense_Mutation 7 101960937 G A 38 79 BRCA TCGA-A8-A06Q PLXNA4 SNP Missense_Mutation 7 131925880 C T 23 56 BRCA TCGA-A8-A06Q LUC7L2 SNP Missense_Mutation 7 139094321 G A 45 76 BRCA TCGA-A8-A06Q ZNF862 DEL Frame_Shift_Del 7 149558908 G - 35 69 BRCA TCGA-A8-A06Q AGAP3 SNP Missense_Mutation 7 150819866 C T 30 71 BRCA TCGA-A8-A06Q SCRN1 SNP Silent 7 29963714 C T 29 54 BRCA TCGA-A8-A06Q BAZ1B SNP Missense_Mutation 7 72891207 C T 32 81 BRCA TCGA-A8-A06Q PCLO SNP Missense_Mutation 7 82390716 C T 32 100 BRCA TCGA-A8-A06Q GRM3 SNP Missense_Mutation 7 86415715 G C 45 100 BRCA TCGA-A8-A06Q CDK14 SNP Missense_Mutation 7 90492537 G A 45 95 BRCA TCGA-A8-A06Q CPSF4 SNP Missense_Mutation 7 99049996 G A 37 95 BRCA TCGA-A8-A06Q INTS9 SNP Silent 8 28627432 C T 30 95 BRCA TCGA-A8-A06Q DUSP26 SNP Missense_Mutation 8 33449726 C G 32 72 BRCA TCGA-A8-A06Q TGS1 SNP Missense_Mutation 8 56699303 G C 33 61 BRCA TCGA-A8-A06Q EYA1 SNP Splice_Site 8 72246524 C T 30 48 BRCA TCGA-A8-A06Q SLC44A1 SNP Missense_Mutation 9 108123558 G C 45 59 BRCA TCGA-A8-A06Q SVEP1 SNP Silent 9 113168448 C T 29 60 BRCA TCGA-A8-A06Q IFNA13 SNP Missense_Mutation 9 21367456 C T 32 49 BRCA TCGA-A8-A06Q TOPORS SNP Missense_Mutation 9 32543678 G A 45 83 BRCA TCGA-A8-A06Q TLN1 SNP Missense_Mutation 9 35720063 C G 32 80 BRCA TCGA-A8-A06R GPR52 SNP Nonsense_Mutation 1 174417939 C A 26 62 BRCA TCGA-A8-A06R AXDND1 SNP Missense_Mutation 1 179452320 T G 51 52 BRCA TCGA-A8-A06R TPR SNP Splice_site 1 186287865 C T 24 98 BRCA TCGA-A8-A06R TMEM125 SNP Missense_Mutation 1 43738829 G A 38 52 BRCA TCGA-A8-A06R PNLIP SNP Missense_Mutation 10 118315541 T G 56 43 BRCA TCGA-A8-A06R DHTKD1 SNP Missense_Mutation 10 12136161 C T 19 83 BRCA TCGA-A8-A06R NSUN6 SNP Missense_Mutation 10 18931451 G A 48 86 BRCA TCGA-A8-A06R DNA2 SNP Missense_Mutation 10 70218891 G A 37 69 BRCA TCGA-A8-A06R PALD1 SNP Missense_Mutation 10 72285804 G A 40 53 BRCA TCGA-A8-A06R PTEN DEL Frame_Shift_Del 10 89720799 TACT - 57 76 BRCA TCGA-A8-A06R DSCAML1 SNP Splice_Site 11 117342753 T C 55 88 BRCA TCGA-A8-A06R TSG101 SNP Missense_Mutation 11 18531179 T C 51 78 BRCA TCGA-A8-A06R NUP160 DEL Frame_Shift_Del 11 47859145 CT - 20 91 BRCA TCGA-A8-A06R ERP29 SNP Missense_Mutation 12 112460034 C T 23 71 BRCA TCGA-A8-A06R LRTM2 SNP Silent 12 1943503 C A 21 59 BRCA TCGA-A8-A06R LRTM2 SNP Missense_Mutation 12 1943594 C T 30 73 BRCA TCGA-A8-A06R CACNA2D4 SNP Silent 12 1949960 C T 29 44 BRCA TCGA-A8-A06R SSPN SNP Silent 12 26383694 C T 23 40 BRCA TCGA-A8-A06R HSD17B6 SNP Silent 12 57181033 T A 53 50 BRCA TCGA-A8-A06R MBD6 SNP Missense_Mutation 12 57918847 A G 16 56 BRCA TCGA-A8-A06R USP44 SNP Missense_Mutation 12 95926958 C T 21 93 BRCA TCGA-A8-A06R PDS5B SNP Silent 13 33275522 C T 29 50 BRCA TCGA-A8-A06R UCHL3 SNP Missense_Mutation 13 76141383 A G 1 74 BRCA TCGA-A8-A06R DYNC1H1 SNP Missense_Mutation 14 102452147 A G 9 93 BRCA TCGA-A8-A06R SALL2 SNP Silent 14 21991858 G A 33 57 BRCA TCGA-A8-A06R LRRC16B SNP Silent 14 24528876 T G 53 51 BRCA TCGA-A8-A06R SNW1 SNP Nonsense_Mutation 14 78205185 G A 48 87 BRCA TCGA-A8-A06R DIS3L SNP Nonsense_Mutation 15 66618592 G A 43 53 BRCA TCGA-A8-A06R TPSAB1 SNP Silent 16 1291188 C T 31 34 BRCA TCGA-A8-A06R BRIP1 SNP Splice_Site 17 59821953 C G 20 95 BRCA TCGA-A8-A06R TTYH2 SNP Missense_Mutation 17 72248454 G T 38 74 BRCA TCGA-A8-A06R DSG4 DEL In_Frame_Del 18 28972180 TCT - 50 73 BRCA TCGA-A8-A06R FFAR1 SNP Silent 19 35843060 C T 19 47 BRCA TCGA-A8-A06R MAP2K2 SNP Silent 19 4101062 G T 37 51 BRCA TCGA-A8-A06R MUC16 DEL Frame_Shift_Del 19 9048936 AA - 9 51 BRCA TCGA-A8-A06R NEB DEL In_Frame_Del 2 152375530 CTT - 24 50 BRCA TCGA-A8-A06R BARD1 SNP Silent 2 215657118 C T 23 55 BRCA TCGA-A8-A06R STON1-GTF2A1L SNP Silent 2 48809392 C T 19 51 BRCA TCGA-A8-A06R NRXN1 SNP Missense_Mutation 2 50850528 G A 46 100 BRCA TCGA-A8-A06R SLC24A3 SNP Missense_Mutation 20 19560658 C G 32 57 BRCA TCGA-A8-A06R HPS4 SNP Silent 22 26860227 T G 55 44 BRCA TCGA-A8-A06R CUL4B SNP Missense_Mutation 23 119694135 G C 41 94 BRCA TCGA-A8-A06R USP51 SNP Missense_Mutation 23 55513981 G C 48 63 BRCA TCGA-A8-A06R PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-A8-A06R LRRN1 SNP Missense_Mutation 3 3888104 A C 3 58 BRCA TCGA-A8-A06R RBM5 SNP Nonsense_Mutation 3 50154522 C T 23 52 BRCA TCGA-A8-A06R WHSC1 SNP Missense_Mutation 4 1920229 A G 10 61 BRCA TCGA-A8-A06R SNCAIP SNP Missense_Mutation 5 121758575 G C 34 57 BRCA TCGA-A8-A06R RBM27 SNP Missense_Mutation 5 145641353 A G 6 77 BRCA TCGA-A8-A06R FAM71B SNP Missense_Mutation 5 156589516 C T 20 40 BRCA TCGA-A8-A06R MAML1 SNP Missense_Mutation 5 179195873 C T 24 70 BRCA TCGA-A8-A06R PRLR SNP Missense_Mutation 5 35086314 C T 30 94 BRCA TCGA-A8-A06R PRDM1 SNP Missense_Mutation 6 106553776 G A 38 52 BRCA TCGA-A8-A06R HLA-C SNP Missense_Mutation 6 31238880 C T 30 75 BRCA TCGA-A8-A06R PEX6 SNP Missense_Mutation 6 42932852 C T 23 87 BRCA TCGA-A8-A06R MDN1 SNP Missense_Mutation 6 90426511 C G 29 95 BRCA TCGA-A8-A06R KLHL7 SNP Missense_Mutation 7 23163424 T G 58 87 BRCA TCGA-A8-A06R BAIAP2L1 SNP Missense_Mutation 7 97933530 G A 41 71 BRCA TCGA-A8-A06R MYBL1 SNP Splice_site 8 67485600 C T 24 93 BRCA TCGA-A8-A06R ZFHX4 SNP Missense_Mutation 8 77620135 A G 1 92 BRCA TCGA-A8-A06R NR4A3 SNP Silent 9 102609749 C T 32 81 BRCA TCGA-A8-A06R GRIN3A SNP Silent 9 104499857 C T 29 60 BRCA TCGA-A8-A06T MTOR SNP Silent 1 11187855 C T 24 61 BRCA TCGA-A8-A06T RC3H1 SNP Missense_Mutation 1 173930909 T C 49 68 BRCA TCGA-A8-A06T SIPA1L2 SNP Missense_Mutation 1 232596654 T A 51 79 BRCA TCGA-A8-A06T NLRP3 SNP Silent 1 247587783 G A 46 54 BRCA TCGA-A8-A06T EIF3I SNP Missense_Mutation 1 32691811 G A 39 95 BRCA TCGA-A8-A06T C10orf71 SNP Missense_Mutation 10 50531374 C T 26 48 BRCA TCGA-A8-A06T GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-A8-A06T LRP4 SNP Missense_Mutation 11 46894951 C T 26 100 BRCA TCGA-A8-A06T ARID2 SNP Missense_Mutation 12 46246210 C T 29 75 BRCA TCGA-A8-A06T KCNC2 SNP Missense_Mutation 12 75601451 C A 31 80 BRCA TCGA-A8-A06T ZFHX2 SNP Missense_Mutation 14 23991682 G A 39 57 BRCA TCGA-A8-A06T ARG2 SNP Missense_Mutation 14 68117462 T C 58 88 BRCA TCGA-A8-A06T TJP1 INS Frame_Shift_Ins 15 30012801 - AA 29 100 BRCA TCGA-A8-A06T COG7 SNP Silent 16 23428334 G A 35 75 BRCA TCGA-A8-A06T PPL SNP Missense_Mutation 16 4939022 T C 55 89 BRCA TCGA-A8-A06T C16orf89 SNP Silent 16 5110367 C T 21 58 BRCA TCGA-A8-A06T KRT39 DEL Frame_Shift_Del 17 39120738 T - 52 66 BRCA TCGA-A8-A06T ABCA6 SNP Missense_Mutation 17 67110993 G C 45 56 BRCA TCGA-A8-A06T ZFP161 SNP Missense_Mutation 18 5290912 G A 38 86 BRCA TCGA-A8-A06T NETO1 SNP Missense_Mutation 18 70526294 C A 25 100 BRCA TCGA-A8-A06T B3GNT3 SNP Missense_Mutation 19 17922578 G C 33 50 BRCA TCGA-A8-A06T APOB SNP Missense_Mutation 2 21231263 T C 54 77 BRCA TCGA-A8-A06T ASXL2 DEL Frame_Shift_Del 2 25978944 G - 35 64 BRCA TCGA-A8-A06T SERTAD2 SNP Missense_Mutation 2 64863109 C T 21 70 BRCA TCGA-A8-A06T C2orf78 SNP Missense_Mutation 2 74011468 C T 30 52 BRCA TCGA-A8-A06T PLCB4 SNP Missense_Mutation 20 9382205 C G 29 87 BRCA TCGA-A8-A06T PRMT2 SNP Missense_Mutation 21 48063504 G A 33 76 BRCA TCGA-A8-A06T SEC14L4 SNP Silent 22 30891391 G A 40 47 BRCA TCGA-A8-A06T SLITRK2 SNP Missense_Mutation 23 144903965 C A 24 74 BRCA TCGA-A8-A06T ANK2 SNP Missense_Mutation 4 114275601 G A 39 56 BRCA TCGA-A8-A06T EPB41L4A DEL In_Frame_Del 5 111500728 TTG - 52 47 BRCA TCGA-A8-A06T AKAP9 SNP Missense_Mutation 7 91630169 A T 12 68 BRCA TCGA-A8-A06T RBM12B SNP Missense_Mutation 8 94746354 T G 59 62 BRCA TCGA-A8-A06T FAM214B SNP Missense_Mutation 9 35107628 T G 54 55 BRCA TCGA-A8-A06U MST1P9 SNP Missense_Mutation 1 17087465 G A 43 53 BRCA TCGA-A8-A06U ARHGEF10L SNP Missense_Mutation 1 17949564 G A 38 91 BRCA TCGA-A8-A06U HMCN1 SNP Splice_site 1 186123119 G T 35 96 BRCA TCGA-A8-A06U TPR SNP Missense_Mutation 1 186315302 C G 29 79 BRCA TCGA-A8-A06U DENND1B SNP Missense_Mutation 1 197611863 A C 4 86 BRCA TCGA-A8-A06U DUSP5P SNP Silent 1 228786335 C T 30 53 BRCA TCGA-A8-A06U SPRTN SNP Missense_Mutation 1 231488908 A G 1 68 BRCA TCGA-A8-A06U PTGFR SNP Missense_Mutation 1 78958991 A C 14 75 BRCA TCGA-A8-A06U UPF2 SNP Nonsense_Mutation 10 12071392 G C 45 99 BRCA TCGA-A8-A06U PCDH15 SNP Silent 10 55582296 A G 1 50 BRCA TCGA-A8-A06U KIAA1377 SNP Missense_Mutation 11 101829065 C A 20 72 BRCA TCGA-A8-A06U HPS5 SNP Missense_Mutation 11 18339303 G C 33 66 BRCA TCGA-A8-A06U LRP4 SNP Silent 11 46880600 T C 58 56 BRCA TCGA-A8-A06U OR10AG1 SNP Missense_Mutation 11 55735564 C A 20 48 BRCA TCGA-A8-A06U ACTN3 SNP Silent 11 66318787 T C 51 48 BRCA TCGA-A8-A06U RBM4 SNP Silent 11 66411228 C T 23 45 BRCA TCGA-A8-A06U SSH3 SNP Silent 11 67077326 C T 19 45 BRCA TCGA-A8-A06U ODZ4 SNP Nonsense_Mutation 11 78412585 C T 30 100 BRCA TCGA-A8-A06U METAP2 DNP Missense_Mutation 12 95888899 GG TT 47 97 BRCA TCGA-A8-A06U AHNAK2 SNP Silent 14 105415953 G A 39 18 BRCA TCGA-A8-A06U NIN SNP Missense_Mutation 14 51288724 A C 5 61 BRCA TCGA-A8-A06U SPTB DEL In_Frame_Del 14 65216860 GTT - 44 51 BRCA TCGA-A8-A06U TUBGCP5 SNP Missense_Mutation 15 22861776 C G 32 96 BRCA TCGA-A8-A06U TUBGCP5 SNP Missense_Mutation 15 22861790 C G 32 74 BRCA TCGA-A8-A06U TUBGCP5 SNP Missense_Mutation 15 22861814 C G 30 49 BRCA TCGA-A8-A06U HERC2 SNP Missense_Mutation 15 28421694 C T 30 87 BRCA TCGA-A8-A06U SLC12A1 SNP Splice_Site 15 48580714 G A 48 95 BRCA TCGA-A8-A06U FBN1 SNP Silent 15 48703385 G A 45 64 BRCA TCGA-A8-A06U CHD2 SNP Silent 15 93545466 G A 33 75 BRCA TCGA-A8-A06U TEKT5 SNP Silent 16 10788482 G A 39 8 BRCA TCGA-A8-A06U MYH4 SNP Missense_Mutation 17 10366448 A G 16 92 BRCA TCGA-A8-A06U KRT35 SNP Missense_Mutation 17 39637093 C T 26 80 BRCA TCGA-A8-A06U CNTNAP1 SNP Silent 17 40847561 G A 39 25 BRCA TCGA-A8-A06U ABCA9 SNP Missense_Mutation 17 66982354 C T 27 71 BRCA TCGA-A8-A06U TP53 DEL Frame_Shift_Del 17 7578222 TC - 62 47 BRCA TCGA-A8-A06U FCGBP SNP Missense_Mutation 19 40374034 A G 6 54 BRCA TCGA-A8-A06U SYMPK SNP Silent 19 46332317 G A 39 42 BRCA TCGA-A8-A06U FUT2 SNP Silent 19 49206810 T C 51 49 BRCA TCGA-A8-A06U TTN SNP Nonsense_Mutation 2 179408032 C T 21 100 BRCA TCGA-A8-A06U TTN SNP Nonsense_Mutation 2 179442793 G A 39 58 BRCA TCGA-A8-A06U ABCG5 SNP Missense_Mutation 2 44052105 G A 40 56 BRCA TCGA-A8-A06U FKSG73 SNP Missense_Mutation 2 92129634 G C 44 78 BRCA TCGA-A8-A06U ZNF341 SNP Missense_Mutation 20 32378997 C T 22 54 BRCA TCGA-A8-A06U ZNF831 SNP Silent 20 57769143 G A 43 50 BRCA TCGA-A8-A06U UMODL1 SNP Silent 21 43508466 C T 19 50 BRCA TCGA-A8-A06U KRTAP10-8 SNP Missense_Mutation 21 46032028 C T 26 53 BRCA TCGA-A8-A06U BTK SNP Missense_Mutation 23 100613405 C T 19 74 BRCA TCGA-A8-A06U TEX11 SNP Silent 23 69773227 A G 5 46 BRCA TCGA-A8-A06U PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A06U LYZL4 SNP Missense_Mutation 3 42448361 T G 60 52 BRCA TCGA-A8-A06U HTR1F SNP Missense_Mutation 3 88039975 G C 44 58 BRCA TCGA-A8-A06U ZNF827 SNP Silent 4 146807134 A G 6 53 BRCA TCGA-A8-A06U RFC1 SNP Missense_Mutation 4 39314522 T C 49 49 BRCA TCGA-A8-A06U OCIAD1 SNP Splice_Site 4 48835499 G A 48 79 BRCA TCGA-A8-A06U USO1 SNP Missense_Mutation 4 76703933 G A 45 98 BRCA TCGA-A8-A06U HERC5 SNP Missense_Mutation 4 89390392 C T 19 54 BRCA TCGA-A8-A06U PCDHGA12 SNP Missense_Mutation 5 140811927 C T 27 83 BRCA TCGA-A8-A06U GPR98 SNP Missense_Mutation 5 90050985 G A 37 56 BRCA TCGA-A8-A06U SLC35F1 SNP Missense_Mutation 6 118556692 A C 4 68 BRCA TCGA-A8-A06U TXLNB SNP Missense_Mutation 6 139563701 G A 38 60 BRCA TCGA-A8-A06U ULBP2 SNP Silent 6 150266509 T C 59 50 BRCA TCGA-A8-A06U TSPO2 SNP Missense_Mutation 6 41011722 C T 17 46 BRCA TCGA-A8-A06U F13A1 SNP Silent 6 6206822 G A 41 55 BRCA TCGA-A8-A06U TBX18 SNP Missense_Mutation 6 85448248 T G 58 90 BRCA TCGA-A8-A06U GJA10 SNP Silent 6 90604250 G T 47 60 BRCA TCGA-A8-A06U RHEB SNP Missense_Mutation 7 151188068 C T 24 96 BRCA TCGA-A8-A06U DNAH11 SNP Silent 7 21744132 T C 59 51 BRCA TCGA-A8-A06U UPP1 SNP Missense_Mutation 7 48147911 G A 39 64 BRCA TCGA-A8-A06U SGK196 SNP Missense_Mutation 8 42977743 T C 55 74 BRCA TCGA-A8-A06U DAB2IP SNP Missense_Mutation 9 124521225 G A 45 97 BRCA TCGA-A8-A06U VCP SNP Silent 9 35062319 A C 6 52 BRCA TCGA-A8-A06U DOCK8 DEL Frame_Shift_Del 9 429793 C - 18 80 BRCA TCGA-A8-A06X NMNAT1 SNP Missense_Mutation 1 10042669 G T 34 57 BRCA TCGA-A8-A06X COL11A1 SNP Missense_Mutation 1 103412494 C G 21 100 BRCA TCGA-A8-A06X KIF1B SNP Missense_Mutation 1 10356711 C G 29 76 BRCA TCGA-A8-A06X TARDBP SNP Missense_Mutation 1 11082428 C T 26 100 BRCA TCGA-A8-A06X CHIA SNP Missense_Mutation 1 111861257 C A 28 78 BRCA TCGA-A8-A06X ATP5F1 SNP Missense_Mutation 1 111996910 G T 41 94 BRCA TCGA-A8-A06X DDX20 SNP Missense_Mutation 1 112305306 G A 40 96 BRCA TCGA-A8-A06X SPAG17 SNP Silent 1 118535191 C T 23 37 BRCA TCGA-A8-A06X PRDM2 SNP Missense_Mutation 1 14108179 A T 3 92 BRCA TCGA-A8-A06X PRKAB2 SNP Silent 1 146639408 G T 46 60 BRCA TCGA-A8-A06X HIST2H3D SNP Silent 1 149784973 C T 23 49 BRCA TCGA-A8-A06X LCE1C SNP Missense_Mutation 1 152777887 T A 56 66 BRCA TCGA-A8-A06X OR6K3 SNP Missense_Mutation 1 158687160 A T 16 59 BRCA TCGA-A8-A06X DDR2 SNP Silent 1 162729697 C T 19 45 BRCA TCGA-A8-A06X TAS1R2 SNP Silent 1 19180890 G C 35 60 BRCA TCGA-A8-A06X PIK3C2B SNP Missense_Mutation 1 204401416 G C 41 100 BRCA TCGA-A8-A06X HSD11B1 SNP Missense_Mutation 1 209879201 G T 43 85 BRCA TCGA-A8-A06X KIF17 SNP Missense_Mutation 1 21009345 C T 30 94 BRCA TCGA-A8-A06X FAM71A SNP Missense_Mutation 1 212799050 G C 35 56 BRCA TCGA-A8-A06X VASH2 SNP Missense_Mutation 1 213146056 G A 38 100 BRCA TCGA-A8-A06X MIA3 SNP Missense_Mutation 1 222802425 A T 4 51 BRCA TCGA-A8-A06X SPRTN SNP Missense_Mutation 1 231489020 T A 51 31 BRCA TCGA-A8-A06X NID1 SNP Missense_Mutation 1 236211995 C G 24 58 BRCA TCGA-A8-A06X ASAP3 SNP Missense_Mutation 1 23760009 G T 38 66 BRCA TCGA-A8-A06X MYOM3 SNP Missense_Mutation 1 24408594 C T 19 64 BRCA TCGA-A8-A06X KIF26B SNP Missense_Mutation 1 245849668 C A 23 100 BRCA TCGA-A8-A06X PTPRU SNP Missense_Mutation 1 29642551 C T 26 96 BRCA TCGA-A8-A06X ZMPSTE24 SNP Missense_Mutation 1 40751696 A G 15 87 BRCA TCGA-A8-A06X INADL SNP Missense_Mutation 1 62380272 T C 57 51 BRCA TCGA-A8-A06X F3 SNP Silent 1 95001579 G T 39 18 BRCA TCGA-A8-A06X CCDC147 SNP Missense_Mutation 10 106214245 C G 20 62 BRCA TCGA-A8-A06X FAM171A1 SNP Silent 10 15255094 C A 25 58 BRCA TCGA-A8-A06X SKIDA1 SNP Silent 10 21805345 G A 47 79 BRCA TCGA-A8-A06X ANKRD26 SNP Splice_Site 10 27326984 C G 32 79 BRCA TCGA-A8-A06X WAC SNP Missense_Mutation 10 28897337 T C 59 90 BRCA TCGA-A8-A06X FAM21B SNP Silent 10 47946862 G A 35 62 BRCA TCGA-A8-A06X TAF3 SNP Nonsense_Mutation 10 8005972 G T 41 98 BRCA TCGA-A8-A06X GRID1 SNP Missense_Mutation 10 87966202 C T 19 88 BRCA TCGA-A8-A06X TNKS2 SNP Missense_Mutation 10 93579042 A T 12 94 BRCA TCGA-A8-A06X ATM SNP Missense_Mutation 11 108119728 T G 59 54 BRCA TCGA-A8-A06X ARHGAP20 SNP Missense_Mutation 11 110450859 G T 34 53 BRCA TCGA-A8-A06X OR8B12 SNP Silent 11 124412711 T A 53 50 BRCA TCGA-A8-A06X MUC5B SNP Silent 11 1272402 C A 30 51 BRCA TCGA-A8-A06X FEN1 SNP Missense_Mutation 11 61563621 T A 56 91 BRCA TCGA-A8-A06X CPT1A SNP Missense_Mutation 11 68566804 G C 35 97 BRCA TCGA-A8-A06X B3GNT6 SNP Missense_Mutation 11 76750962 G A 44 56 BRCA TCGA-A8-A06X MYO7A SNP Missense_Mutation 11 76870558 T A 50 50 BRCA TCGA-A8-A06X GAB2 SNP Missense_Mutation 11 77991673 C T 26 100 BRCA TCGA-A8-A06X NARS2 SNP Missense_Mutation 11 78277247 C A 30 54 BRCA TCGA-A8-A06X NOX4 SNP Silent 11 89073285 T C 54 54 BRCA TCGA-A8-A06X DEPDC4 DNP Missense_Mutation 12 100660824 GC CT 34 42 BRCA TCGA-A8-A06X CMKLR1 SNP Missense_Mutation 12 108685671 A T 10 68 BRCA TCGA-A8-A06X WDR66 SNP Missense_Mutation 12 122404947 G A 38 63 BRCA TCGA-A8-A06X PIWIL1 SNP Missense_Mutation 12 130839517 G A 40 74 BRCA TCGA-A8-A06X ULK1 DEL In_Frame_Del 12 132391450 CTG - 32 76 BRCA TCGA-A8-A06X POLE SNP Missense_Mutation 12 133226044 G T 46 100 BRCA TCGA-A8-A06X TMTC1 SNP Missense_Mutation 12 29904777 G T 43 58 BRCA TCGA-A8-A06X ADAMTS20 SNP Missense_Mutation 12 43821169 T G 54 89 BRCA TCGA-A8-A06X FGF23 SNP Missense_Mutation 12 4479691 C T 19 66 BRCA TCGA-A8-A06X KRT77 SNP Silent 12 53086263 G A 34 62 BRCA TCGA-A8-A06X TPI1 SNP Missense_Mutation 12 6979542 C A 17 55 BRCA TCGA-A8-A06X OTOGL SNP Missense_Mutation 12 80726854 G A 48 74 BRCA TCGA-A8-A06X ITGBL1 SNP Splice_site 13 102220051 C G 26 64 BRCA TCGA-A8-A06X GRTP1 SNP Missense_Mutation 13 114009727 G T 42 91 BRCA TCGA-A8-A06X AKT1 SNP Silent 14 105238714 C A 17 49 BRCA TCGA-A8-A06X CTSG SNP Missense_Mutation 14 25043693 C A 20 42 BRCA TCGA-A8-A06X SYNE2 SNP Missense_Mutation 14 64445702 A C 4 50 BRCA TCGA-A8-A06X ISM2 SNP Silent 14 77942031 G A 40 47 BRCA TCGA-A8-A06X CHGA SNP Silent 14 93392991 C A 21 58 BRCA TCGA-A8-A06X BDKRB1 SNP Missense_Mutation 14 96730334 C G 31 50 BRCA TCGA-A8-A06X LYSMD4 SNP Missense_Mutation 15 100269704 C G 22 63 BRCA TCGA-A8-A06X ADAMTS17 SNP Missense_Mutation 15 100739614 C T 24 82 BRCA TCGA-A8-A06X PLCB2 SNP Missense_Mutation 15 40589083 G T 42 51 BRCA TCGA-A8-A06X SPINT1 SNP Silent 15 41148157 C T 24 54 BRCA TCGA-A8-A06X CGNL1 SNP Missense_Mutation 15 57731735 C T 20 57 BRCA TCGA-A8-A06X MEGF11 SNP Missense_Mutation 15 66416295 G C 45 100 BRCA TCGA-A8-A06X ACSBG1 DNP Missense_Mutation 15 78474936 CC AG 22 98 BRCA TCGA-A8-A06X ADAMTS7 SNP Silent 15 79064140 G T 38 23 BRCA TCGA-A8-A06X ACSM5 SNP Missense_Mutation 16 20439155 A T 8 47 BRCA TCGA-A8-A06X DNAH3 SNP Silent 16 21117908 T C 61 51 BRCA TCGA-A8-A06X SRCAP SNP Silent 16 30724858 G A 45 48 BRCA TCGA-A8-A06X AHSP SNP Missense_Mutation 16 31539996 C A 21 54 BRCA TCGA-A8-A06X ZNF174 SNP Missense_Mutation 16 3452203 C G 28 73 BRCA TCGA-A8-A06X PKD1L2 SNP Missense_Mutation 16 81232281 G A 34 65 BRCA TCGA-A8-A06X MYH13 SNP Missense_Mutation 17 10212947 C A 32 74 BRCA TCGA-A8-A06X CDRT1 SNP Silent 17 15508674 T A 62 51 BRCA TCGA-A8-A06X COPS3 SNP Missense_Mutation 17 17168210 T C 49 77 BRCA TCGA-A8-A06X NF1 SNP Missense_Mutation 17 29576081 A G 7 77 BRCA TCGA-A8-A06X CCT6B SNP Missense_Mutation 17 33266673 C T 25 68 BRCA TCGA-A8-A06X ERBB2 SNP Silent 17 37879581 G T 40 36 BRCA TCGA-A8-A06X NT5C3L SNP Missense_Mutation 17 39988648 C G 30 86 BRCA TCGA-A8-A06X GGA3 SNP Missense_Mutation 17 73242652 C A 19 88 BRCA TCGA-A8-A06X EVPL SNP Missense_Mutation 17 74003870 G C 43 51 BRCA TCGA-A8-A06X CD68 DEL Splice_Site 17 7483164 CAG - 29 79 BRCA TCGA-A8-A06X ABR SNP Silent 17 960314 C T 21 61 BRCA TCGA-A8-A06X CEP192 SNP Missense_Mutation 18 13117605 G A 33 83 BRCA TCGA-A8-A06X MIB1 SNP Missense_Mutation 18 19348617 G C 33 61 BRCA TCGA-A8-A06X SLC39A6 SNP Missense_Mutation 18 33691076 C T 17 73 BRCA TCGA-A8-A06X ZNF532 SNP Silent 18 56585741 C T 23 26 BRCA TCGA-A8-A06X RTTN DEL Splice_site 18 67809622 AACTACAAACCAAAAAAAA - 5 53 BRCA TCGA-A8-A06X NETO1 SNP Missense_Mutation 18 70416292 C T 29 98 BRCA TCGA-A8-A06X TYK2 SNP Silent 19 10475418 C T 27 54 BRCA TCGA-A8-A06X CPAMD8 SNP Silent 19 17040007 A G 8 45 BRCA TCGA-A8-A06X FKBP8 SNP Silent 19 18648426 G A 33 46 BRCA TCGA-A8-A06X LSR SNP Missense_Mutation 19 35758063 C T 30 56 BRCA TCGA-A8-A06X POLR2I SNP Silent 19 36604687 G A 43 49 BRCA TCGA-A8-A06X ZNF565 SNP Missense_Mutation 19 36674042 C T 31 93 BRCA TCGA-A8-A06X EEF2 SNP Missense_Mutation 19 3982420 G C 37 33 BRCA TCGA-A8-A06X ERF SNP Missense_Mutation 19 42752723 C T 19 61 BRCA TCGA-A8-A06X TMIGD2 SNP Silent 19 4292764 C T 27 47 BRCA TCGA-A8-A06X RTN2 SNP Missense_Mutation 19 45997999 A C 7 66 BRCA TCGA-A8-A06X GYS1 SNP Missense_Mutation 19 49481193 G C 33 66 BRCA TCGA-A8-A06X KIR3DL2 SNP Missense_Mutation 19 55367355 G C 48 46 BRCA TCGA-A8-A06X ZNF835 SNP Missense_Mutation 19 57176288 C A 26 51 BRCA TCGA-A8-A06X ACSBG2 SNP Missense_Mutation 19 6183250 C T 19 82 BRCA TCGA-A8-A06X ZNF426 SNP Missense_Mutation 19 9639594 G A 41 46 BRCA TCGA-A8-A06X SLC9A4 SNP Missense_Mutation 2 103095669 G T 42 100 BRCA TCGA-A8-A06X ANAPC1 SNP Missense_Mutation 2 112608454 G T 41 82 BRCA TCGA-A8-A06X MGAT5 SNP Nonsense_Mutation 2 135107491 C T 25 100 BRCA TCGA-A8-A06X TTN SNP Missense_Mutation 2 179613547 T C 60 56 BRCA TCGA-A8-A06X PMS1 SNP Missense_Mutation 2 190728500 C G 19 61 BRCA TCGA-A8-A06X DNAH7 SNP Missense_Mutation 2 196682525 G C 35 98 BRCA TCGA-A8-A06X HECW2 SNP Silent 2 197189776 G A 35 50 BRCA TCGA-A8-A06X CCDC150 SNP Splice_Site 2 197540865 A T 7 63 BRCA TCGA-A8-A06X PGAP1 SNP Missense_Mutation 2 197710731 G A 36 62 BRCA TCGA-A8-A06X MPP4 SNP Splice_site 2 202514888 T C 58 87 BRCA TCGA-A8-A06X PARD3B DEL Frame_Shift_Del 2 206023581 GACTTGGG - 33 99 BRCA TCGA-A8-A06X CPS1 SNP Missense_Mutation 2 211459261 A G 13 46 BRCA TCGA-A8-A06X STRN SNP Missense_Mutation 2 37121173 C T 17 64 BRCA TCGA-A8-A06X THADA SNP Missense_Mutation 2 43514063 G T 44 52 BRCA TCGA-A8-A06X SIX2 SNP Missense_Mutation 2 45236119 T A 59 88 BRCA TCGA-A8-A06X USP34 SNP Missense_Mutation 2 61528234 G T 47 100 BRCA TCGA-A8-A06X CD207 SNP Silent 2 71062661 G A 34 58 BRCA TCGA-A8-A06X DOK1 SNP Silent 2 74783920 C T 26 57 BRCA TCGA-A8-A06X REG3A SNP Missense_Mutation 2 79384383 C G 24 41 BRCA TCGA-A8-A06X SYCP2 SNP Silent 20 58452593 G T 45 50 BRCA TCGA-A8-A06X TMPRSS15 SNP Missense_Mutation 21 19713777 A T 3 48 BRCA TCGA-A8-A06X TMPRSS15 SNP Missense_Mutation 21 19770634 C G 30 50 BRCA TCGA-A8-A06X AGPAT3 SNP Splice_site 21 45400871 A T 10 90 BRCA TCGA-A8-A06X COL6A1 SNP Missense_Mutation 21 47421277 C A 28 55 BRCA TCGA-A8-A06X PPIL2 SNP Missense_Mutation 22 22048108 C A 29 51 BRCA TCGA-A8-A06X C22orf23 SNP Missense_Mutation 22 38349110 A T 9 60 BRCA TCGA-A8-A06X PIH1D3 SNP Silent 23 106486492 T G 53 47 BRCA TCGA-A8-A06X DCAF12L1 SNP Missense_Mutation 23 125685742 C T 23 82 BRCA TCGA-A8-A06X FAM45B SNP Missense_Mutation 23 129630013 A G 11 60 BRCA TCGA-A8-A06X EGFL6 DEL In_Frame_Del 23 13624525 TCA - 58 59 BRCA TCGA-A8-A06X BMX SNP Missense_Mutation 23 15552435 A G 16 83 BRCA TCGA-A8-A06X HUWE1 SNP Missense_Mutation 23 53573667 C G 32 97 BRCA TCGA-A8-A06X ACRC SNP Missense_Mutation 23 70828945 A T 2 74 BRCA TCGA-A8-A06X CYLC1 SNP Missense_Mutation 23 83129611 C G 21 56 BRCA TCGA-A8-A06X HCLS1 SNP Nonsense_Mutation 3 121376169 C A 22 89 BRCA TCGA-A8-A06X ADCY5 SNP Splice_site 3 123015062 G C 43 62 BRCA TCGA-A8-A06X EFCAB12 SNP Missense_Mutation 3 129130116 T A 64 51 BRCA TCGA-A8-A06X PLOD2 SNP Silent 3 145794677 T A 49 49 BRCA TCGA-A8-A06X C3orf20 SNP Missense_Mutation 3 14744664 G T 34 47 BRCA TCGA-A8-A06X PLCL2 SNP Missense_Mutation 3 17052777 T C 62 92 BRCA TCGA-A8-A06X THRB SNP Missense_Mutation 3 24169035 C T 29 100 BRCA TCGA-A8-A06X AZI2 SNP Silent 3 28365572 G A 36 75 BRCA TCGA-A8-A06X CNTN4 SNP Missense_Mutation 3 3078956 T C 59 53 BRCA TCGA-A8-A06X SCN10A SNP Missense_Mutation 3 38802768 T A 60 56 BRCA TCGA-A8-A06X SCN11A SNP Missense_Mutation 3 38888484 C T 18 99 BRCA TCGA-A8-A06X ABHD5 SNP Splice_site 3 43740768 G A 44 75 BRCA TCGA-A8-A06X ATXN7 SNP Missense_Mutation 3 63965690 C T 25 61 BRCA TCGA-A8-A06X POU4F2 SNP Missense_Mutation 4 147561487 G T 38 86 BRCA TCGA-A8-A06X GPM6A SNP Missense_Mutation 4 176594836 C T 27 85 BRCA TCGA-A8-A06X ATOH1 SNP Missense_Mutation 4 94750843 G A 42 52 BRCA TCGA-A8-A06X PCDHB12 DNP Missense_Mutation 5 140588975 GC TT 46 40 BRCA TCGA-A8-A06X PCDHGB3 SNP Missense_Mutation 5 140750980 A T 9 61 BRCA TCGA-A8-A06X PCDHGA6 SNP Silent 5 140755396 A C 7 51 BRCA TCGA-A8-A06X FCHSD1 SNP Nonsense_Mutation 5 141025749 G A 40 63 BRCA TCGA-A8-A06X PLEKHG4B SNP Silent 5 151657 C T 32 51 BRCA TCGA-A8-A06X COL23A1 SNP Missense_Mutation 5 177666152 C T 25 82 BRCA TCGA-A8-A06X COL23A1 SNP Missense_Mutation 5 177669352 C T 19 56 BRCA TCGA-A8-A06X CDH12 SNP Missense_Mutation 5 21975210 C A 17 96 BRCA TCGA-A8-A06X LAMA4 SNP Missense_Mutation 6 112512916 G A 40 69 BRCA TCGA-A8-A06X ROS1 SNP Splice_Site 6 117629955 A G 14 89 BRCA TCGA-A8-A06X EDN1 SNP Missense_Mutation 6 12294286 G T 33 93 BRCA TCGA-A8-A06X PHACTR2 SNP Missense_Mutation 6 144081565 C T 23 84 BRCA TCGA-A8-A06X ZBTB2 SNP Missense_Mutation 6 151687437 G A 42 88 BRCA TCGA-A8-A06X C6orf70 SNP Missense_Mutation 6 170168259 C T 26 71 BRCA TCGA-A8-A06X PIM1 SNP Missense_Mutation 6 37139098 C A 28 71 BRCA TCGA-A8-A06X DST SNP Splice_Site 6 56394933 T C 53 93 BRCA TCGA-A8-A06X DST SNP Missense_Mutation 6 56438665 C T 29 77 BRCA TCGA-A8-A06X GJA10 SNP Silent 6 90605438 G T 43 45 BRCA TCGA-A8-A06X TRIM56 SNP Missense_Mutation 7 100732118 C G 23 70 BRCA TCGA-A8-A06X MET SNP Missense_Mutation 7 116339812 G A 44 100 BRCA TCGA-A8-A06X POT1 SNP Missense_Mutation 7 124481227 T A 62 78 BRCA TCGA-A8-A06X PLXNA4 SNP Silent 7 131982949 G T 41 50 BRCA TCGA-A8-A06X OR9A4 SNP Silent 7 141618801 A T 7 20 BRCA TCGA-A8-A06X CLCN1 SNP Missense_Mutation 7 143029922 C T 23 54 BRCA TCGA-A8-A06X ZNF398 SNP Missense_Mutation 7 148876070 C A 22 70 BRCA TCGA-A8-A06X MLL3 INS Frame_Shift_Ins 7 151855981 - CTTGT 36 49 BRCA TCGA-A8-A06X MLL3 INS In_Frame_Ins 7 151855984 - TCT 17 60 BRCA TCGA-A8-A06X AHR SNP Missense_Mutation 7 17349613 G C 33 100 BRCA TCGA-A8-A06X PKD1L1 SNP Silent 7 47917120 G A 39 53 BRCA TCGA-A8-A06X PKD1L1 SNP Missense_Mutation 7 47921626 C G 30 55 BRCA TCGA-A8-A06X PCLO DNP Missense_Mutation 7 82545243 CT AC 28 100 BRCA TCGA-A8-A06X SEMA3A SNP Silent 7 83675755 T G 54 53 BRCA TCGA-A8-A06X TFPI2 SNP Missense_Mutation 7 93519536 G A 39 57 BRCA TCGA-A8-A06X KCNV1 SNP Missense_Mutation 8 110984688 C A 17 86 BRCA TCGA-A8-A06X CSMD3 SNP Silent 8 113237153 T G 59 53 BRCA TCGA-A8-A06X ATAD2 SNP Silent 8 124360463 T C 59 48 BRCA TCGA-A8-A06X ADCY8 SNP Silent 8 131792944 G T 39 77 BRCA TCGA-A8-A06X XPO7 SNP Splice_Site 8 21842351 G A 44 100 BRCA TCGA-A8-A06X PLAT SNP Splice_site 8 42050632 C G 24 75 BRCA TCGA-A8-A06X RP1 SNP Missense_Mutation 8 55538958 A C 5 54 BRCA TCGA-A8-A06X PENK SNP Missense_Mutation 8 57354286 G T 34 59 BRCA TCGA-A8-A06X ABCA1 SNP Missense_Mutation 9 107589387 C A 17 58 BRCA TCGA-A8-A06X PKN3 SNP Missense_Mutation 9 131475817 C T 27 55 BRCA TCGA-A8-A06X IFNE SNP Silent 9 21481118 G A 35 55 BRCA TCGA-A8-A06Y MTOR SNP Missense_Mutation 1 11169377 T A 50 86 BRCA TCGA-A8-A06Y SZT2 SNP Splice_Site 1 43908290 G A 44 78 BRCA TCGA-A8-A06Y EXOC6 SNP Missense_Mutation 10 94653227 G C 33 100 BRCA TCGA-A8-A06Y PPFIBP2 SNP Silent 11 7672916 C G 22 42 BRCA TCGA-A8-A06Y SCYL2 SNP Nonsense_Mutation 12 100676854 C T 31 73 BRCA TCGA-A8-A06Y OR11H6 SNP Missense_Mutation 14 20692496 G T 46 57 BRCA TCGA-A8-A06Y PRPF39 SNP Missense_Mutation 14 45579794 A C 9 55 BRCA TCGA-A8-A06Y TC2N DNP Silent 14 92265374 GA CT 33 63 BRCA TCGA-A8-A06Y GOLGA5 SNP Missense_Mutation 14 93273140 G T 48 49 BRCA TCGA-A8-A06Y CLPX SNP Missense_Mutation 15 65450966 T A 50 70 BRCA TCGA-A8-A06Y TXNDC11 SNP Missense_Mutation 16 11792021 G T 35 78 BRCA TCGA-A8-A06Y USP31 SNP Missense_Mutation 16 23085124 C A 18 97 BRCA TCGA-A8-A06Y CCT6B SNP Splice_Site 17 33269814 C T 19 61 BRCA TCGA-A8-A06Y ABCA8 SNP Silent 17 66873755 G A 40 49 BRCA TCGA-A8-A06Y RYR1 SNP Missense_Mutation 19 38933047 G A 37 89 BRCA TCGA-A8-A06Y GALNT13 SNP Missense_Mutation 2 155157929 A G 5 90 BRCA TCGA-A8-A06Y NDUFAF5 SNP Missense_Mutation 20 13769239 T G 64 87 BRCA TCGA-A8-A06Y KIF3B SNP Silent 20 30898744 C T 25 63 BRCA TCGA-A8-A06Y CBLN4 SNP Missense_Mutation 20 54579007 G A 37 87 BRCA TCGA-A8-A06Y ASCC2 SNP Missense_Mutation 22 30189409 T C 57 74 BRCA TCGA-A8-A06Y GAB3 SNP Missense_Mutation 23 153928295 C T 23 79 BRCA TCGA-A8-A06Y DMD SNP Silent 23 32867884 G T 42 60 BRCA TCGA-A8-A06Y KDM6A DEL Frame_Shift_Del 23 44911035 T - 56 67 BRCA TCGA-A8-A06Y NEK11 SNP Missense_Mutation 3 131068491 G A 33 62 BRCA TCGA-A8-A06Y GABRA1 SNP Missense_Mutation 5 161309644 C A 19 67 BRCA TCGA-A8-A06Y FAM120B DEL In_Frame_Del 6 170626796 CAAGAA - 29 49 BRCA TCGA-A8-A06Y HIST1H4J SNP Missense_Mutation 6 27792030 G T 42 90 BRCA TCGA-A8-A06Y CYTH3 SNP Silent 7 6210236 C T 23 39 BRCA TCGA-A8-A06Y SAMD9 SNP Missense_Mutation 7 92733834 G A 45 68 BRCA TCGA-A8-A06Y DKK4 SNP Missense_Mutation 8 42234500 C A 30 65 BRCA TCGA-A8-A06Z CHD1L SNP Missense_Mutation 1 146766140 G C 44 89 BRCA TCGA-A8-A06Z PLXNA2 SNP Missense_Mutation 1 208257849 C T 31 66 BRCA TCGA-A8-A06Z KIF26B SNP Missense_Mutation 1 245530376 G A 40 49 BRCA TCGA-A8-A06Z AJAP1 SNP Missense_Mutation 1 4771985 C G 23 53 BRCA TCGA-A8-A06Z BCAR3 SNP Missense_Mutation 1 94140474 T G 64 83 BRCA TCGA-A8-A06Z SLC25A28 SNP Missense_Mutation 10 101370803 G C 48 59 BRCA TCGA-A8-A06Z DMBT1 SNP Missense_Mutation 10 124402730 T A 62 52 BRCA TCGA-A8-A06Z SGPL1 SNP Silent 10 72631650 C A 29 65 BRCA TCGA-A8-A06Z TM9SF3 SNP Missense_Mutation 10 98303943 T A 50 90 BRCA TCGA-A8-A06Z RRP12 SNP Silent 10 99130710 C T 27 17 BRCA TCGA-A8-A06Z SPTY2D1 SNP Silent 11 18636798 G A 47 59 BRCA TCGA-A8-A06Z CKAP5 SNP Silent 11 46839992 A G 8 70 BRCA TCGA-A8-A06Z NLRP10 SNP Missense_Mutation 11 7982171 C A 30 56 BRCA TCGA-A8-A06Z SLC5A8 SNP Missense_Mutation 12 101560338 G A 48 60 BRCA TCGA-A8-A06Z GNPTAB SNP Missense_Mutation 12 102179874 A G 9 50 BRCA TCGA-A8-A06Z CHST11 SNP Silent 12 105151386 C T 19 62 BRCA TCGA-A8-A06Z RNF10 SNP Missense_Mutation 12 121013640 A G 11 89 BRCA TCGA-A8-A06Z GRIN2B SNP Splice_site 12 13906251 C G 24 95 BRCA TCGA-A8-A06Z PLCZ1 SNP Missense_Mutation 12 18854640 C G 18 59 BRCA TCGA-A8-A06Z PARP11 SNP Silent 12 3939170 T C 56 57 BRCA TCGA-A8-A06Z MLL2 SNP Silent 12 49436409 A G 12 55 BRCA TCGA-A8-A06Z KITLG SNP Missense_Mutation 12 88939581 T C 62 58 BRCA TCGA-A8-A06Z PLEKHH1 DEL Frame_Shift_Del 14 68029176 A - 12 55 BRCA TCGA-A8-A06Z DICER1 SNP Missense_Mutation 14 95574771 C A 18 99 BRCA TCGA-A8-A06Z CHRNB4 SNP Silent 15 78921528 G A 39 37 BRCA TCGA-A8-A06Z CLEC16A SNP Missense_Mutation 16 11076751 A T 8 86 BRCA TCGA-A8-A06Z SLC7A6OS SNP Missense_Mutation 16 68337945 C A 28 70 BRCA TCGA-A8-A06Z RPL13 SNP Missense_Mutation 16 89629419 C T 26 97 BRCA TCGA-A8-A06Z GRIN2A SNP Missense_Mutation 16 9858117 G T 43 95 BRCA TCGA-A8-A06Z MYH2 SNP Missense_Mutation 17 10436645 C A 24 100 BRCA TCGA-A8-A06Z ERBB2 SNP Missense_Mutation 17 37868205 G C 41 76 BRCA TCGA-A8-A06Z SDK2 SNP Missense_Mutation 17 71427674 C A 18 78 BRCA TCGA-A8-A06Z DNAH17 SNP Missense_Mutation 17 76459120 C T 19 98 BRCA TCGA-A8-A06Z CDH20 SNP Missense_Mutation 18 59221671 G A 38 53 BRCA TCGA-A8-A06Z KIRREL2 SNP Silent 19 36357208 C T 25 52 BRCA TCGA-A8-A06Z YIF1B SNP Silent 19 38799894 C A 21 53 BRCA TCGA-A8-A06Z ZNF616 SNP Missense_Mutation 19 52618711 C A 32 57 BRCA TCGA-A8-A06Z ZFP28 SNP Nonsense_Mutation 19 57066546 G T 47 58 BRCA TCGA-A8-A06Z TTN SNP Silent 2 179604295 C A 22 48 BRCA TCGA-A8-A06Z NRP2 SNP Missense_Mutation 2 206659554 G C 33 56 BRCA TCGA-A8-A06Z RAE1 SNP Missense_Mutation 20 55949808 A G 4 93 BRCA TCGA-A8-A06Z SLC5A4 SNP Missense_Mutation 22 32621791 T G 60 66 BRCA TCGA-A8-A06Z MEI1 SNP Missense_Mutation 22 42166957 A C 8 72 BRCA TCGA-A8-A06Z ZMAT1 SNP Missense_Mutation 23 101152870 G T 46 50 BRCA TCGA-A8-A06Z FRMPD4 SNP Missense_Mutation 23 12627986 G A 38 81 BRCA TCGA-A8-A06Z GPR50 SNP Missense_Mutation 23 150348636 G T 46 68 BRCA TCGA-A8-A06Z ASB9 SNP Missense_Mutation 23 15272920 T C 51 77 BRCA TCGA-A8-A06Z HUWE1 SNP Silent 23 53573461 G A 48 80 BRCA TCGA-A8-A06Z HDX SNP Silent 23 83724020 G A 42 49 BRCA TCGA-A8-A06Z ZNF711 SNP Missense_Mutation 23 84525674 G T 45 84 BRCA TCGA-A8-A06Z SLC41A3 SNP Missense_Mutation 3 125787006 C A 28 48 BRCA TCGA-A8-A06Z TMEM14E SNP Missense_Mutation 3 152058621 C T 24 50 BRCA TCGA-A8-A06Z SETD2 SNP Silent 3 47084164 G A 33 56 BRCA TCGA-A8-A06Z KIF9 SNP Missense_Mutation 3 47284720 C G 24 58 BRCA TCGA-A8-A06Z GLT8D1 SNP Missense_Mutation 3 52729266 G C 34 85 BRCA TCGA-A8-A06Z FLNB SNP Silent 3 58067421 C T 22 54 BRCA TCGA-A8-A06Z OR5H1 SNP Silent 3 97851850 G A 40 42 BRCA TCGA-A8-A06Z OR5H15 DEL Frame_Shift_Del 3 97888342 G - 34 49 BRCA TCGA-A8-A06Z ATP10D SNP Missense_Mutation 4 47574191 A G 15 91 BRCA TCGA-A8-A06Z AFAP1 SNP Missense_Mutation 4 7820870 C A 20 59 BRCA TCGA-A8-A06Z POU4F3 SNP Missense_Mutation 5 145719165 G A 34 89 BRCA TCGA-A8-A06Z SLC30A5 SNP Missense_Mutation 5 68413160 T C 61 91 BRCA TCGA-A8-A06Z FAM169A SNP Splice_Site 5 74096704 C G 20 63 BRCA TCGA-A8-A06Z TNS3 SNP Missense_Mutation 7 47333397 G A 46 96 BRCA TCGA-A8-A06Z PCLO SNP Missense_Mutation 7 82764006 G T 44 49 BRCA TCGA-A8-A06Z GRHL2 SNP Missense_Mutation 8 102570972 C T 32 60 BRCA TCGA-A8-A06Z RPL7 SNP Silent 8 74204933 G T 43 59 BRCA TCGA-A8-A06Z PPP2R4 SNP Missense_Mutation 9 131885350 G C 41 98 BRCA TCGA-A8-A06Z PPP2R4 SNP Missense_Mutation 9 131885381 G T 35 70 BRCA TCGA-A8-A06Z WDR5 SNP Silent 9 137021657 T A 63 73 BRCA TCGA-A8-A075 PRAMEF2 SNP Missense_Mutation 1 12921147 T C 54 55 BRCA TCGA-A8-A075 NCSTN SNP Silent 1 160327968 C T 30 61 BRCA TCGA-A8-A075 RGS4 SNP Missense_Mutation 1 163043400 G C 35 57 BRCA TCGA-A8-A075 FAM5C SNP Silent 1 190068153 C T 24 71 BRCA TCGA-A8-A075 ATP2B4 SNP Missense_Mutation 1 203702418 G T 44 66 BRCA TCGA-A8-A075 ZSCAN20 SNP Missense_Mutation 1 33956633 G T 36 55 BRCA TCGA-A8-A075 MACF1 DEL Frame_Shift_Del 1 39797635 ATAATCTGATTGACCAAGAT - 8 63 BRCA TCGA-A8-A075 ZNF642 SNP Missense_Mutation 1 40947462 T A 57 52 BRCA TCGA-A8-A075 H6PD SNP Missense_Mutation 1 9322166 A C 7 87 BRCA TCGA-A8-A075 PITRM1 SNP Missense_Mutation 10 3181215 T A 55 68 BRCA TCGA-A8-A075 NRP1 SNP Missense_Mutation 10 33502337 C T 30 100 BRCA TCGA-A8-A075 NRP1 SNP Nonsense_Mutation 10 33545247 C A 32 100 BRCA TCGA-A8-A075 PDE6C SNP Missense_Mutation 10 95422824 A T 11 71 BRCA TCGA-A8-A075 SBF2 SNP Missense_Mutation 11 10014057 T G 62 92 BRCA TCGA-A8-A075 CEP164 SNP Missense_Mutation 11 117263223 C G 26 59 BRCA TCGA-A8-A075 ARHGEF12 SNP Nonsense_Mutation 11 120352172 G T 43 65 BRCA TCGA-A8-A075 RPLP0P2 SNP Missense_Mutation 11 61404918 A T 12 60 BRCA TCGA-A8-A075 TRIM3 SNP Missense_Mutation 11 6478096 G T 39 94 BRCA TCGA-A8-A075 ARHGDIB SNP Missense_Mutation 12 15095600 C A 20 57 BRCA TCGA-A8-A075 LRMP SNP Missense_Mutation 12 25254214 G T 44 60 BRCA TCGA-A8-A075 KRT86 SNP Silent 12 52700002 C G 21 83 BRCA TCGA-A8-A075 NCKAP1L SNP Missense_Mutation 12 54917613 G A 41 95 BRCA TCGA-A8-A075 STAT6 SNP Silent 12 57500358 G A 33 57 BRCA TCGA-A8-A075 CYP27B1 SNP Missense_Mutation 12 58159202 C T 30 50 BRCA TCGA-A8-A075 LRIG3 SNP Missense_Mutation 12 59271267 G C 34 100 BRCA TCGA-A8-A075 CDK17 SNP Missense_Mutation 12 96728499 T C 52 69 BRCA TCGA-A8-A075 LCP1 SNP Missense_Mutation 13 46701847 G A 33 100 BRCA TCGA-A8-A075 IGHG3 SNP Silent 14 106237474 G C 46 50 BRCA TCGA-A8-A075 CASC4 SNP Missense_Mutation 15 44630015 C G 29 58 BRCA TCGA-A8-A075 WDR93 SNP Silent 15 90258281 C T 22 44 BRCA TCGA-A8-A075 SNP Silent 16 18433315 C T 27 50 BRCA TCGA-A8-A075 RBBP6 SNP Missense_Mutation 16 24582488 T G 59 48 BRCA TCGA-A8-A075 ZNF434 SNP Missense_Mutation 16 3432953 G A 45 51 BRCA TCGA-A8-A075 COL1A1 SNP Missense_Mutation 17 48270012 G T 43 67 BRCA TCGA-A8-A075 SDK2 SNP Silent 17 71410870 G A 40 47 BRCA TCGA-A8-A075 TP53 SNP Splice_Site 17 7578370 C A 18 81 BRCA TCGA-A8-A075 LDLR SNP Silent 19 11213440 C T 19 39 BRCA TCGA-A8-A075 CPAMD8 SNP Missense_Mutation 19 17015133 A G 7 84 BRCA TCGA-A8-A075 FBXO17 SNP Missense_Mutation 19 39409429 C T 32 89 BRCA TCGA-A8-A075 GPR108 SNP Splice_site 19 6731903 C T 24 58 BRCA TCGA-A8-A075 MUC16 SNP Missense_Mutation 19 9057075 G C 37 47 BRCA TCGA-A8-A075 MUC16 SNP Silent 19 9064046 G A 35 52 BRCA TCGA-A8-A075 MYO7B SNP Missense_Mutation 2 128386057 G T 42 77 BRCA TCGA-A8-A075 COL5A2 SNP Missense_Mutation 2 189898939 G A 38 66 BRCA TCGA-A8-A075 SF3B1 SNP Nonsense_Mutation 2 198274677 C A 22 100 BRCA TCGA-A8-A075 FASTKD2 SNP Missense_Mutation 2 207656516 G C 34 55 BRCA TCGA-A8-A075 NFU1 SNP Silent 2 69642366 A G 5 66 BRCA TCGA-A8-A075 SEMA4F SNP Silent 2 74902498 C G 32 50 BRCA TCGA-A8-A075 ANKRD36 SNP Missense_Mutation 2 97866080 G A 39 43 BRCA TCGA-A8-A075 EDEM2 SNP Missense_Mutation 20 33711728 G T 48 100 BRCA TCGA-A8-A075 DDX27 SNP Nonsense_Mutation 20 47839853 G T 41 57 BRCA TCGA-A8-A075 SLC5A4 SNP Silent 22 32631034 C T 29 80 BRCA TCGA-A8-A075 HTATSF1 SNP Missense_Mutation 23 135594126 G A 42 53 BRCA TCGA-A8-A075 ATRX DEL Frame_Shift_Del 23 76949382 C - 32 87 BRCA TCGA-A8-A075 SHROOM2 SNP Missense_Mutation 23 9863794 G A 40 55 BRCA TCGA-A8-A075 SPSB4 SNP Silent 3 140785393 C G 32 59 BRCA TCGA-A8-A075 PIK3CA SNP Missense_Mutation 3 178928079 G A 33 98 BRCA TCGA-A8-A075 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-A8-A075 ZNF501 DEL Frame_Shift_Del 3 44776563 TTTATAAGTG - 56 51 BRCA TCGA-A8-A075 TRPC3 SNP Silent 4 122853549 G A 45 62 BRCA TCGA-A8-A075 KIAA0232 SNP Missense_Mutation 4 6865167 G T 33 78 BRCA TCGA-A8-A075 ANKRD17 SNP Missense_Mutation 4 74124127 C T 31 70 BRCA TCGA-A8-A075 SYCP2L SNP Silent 6 10926595 C T 32 36 BRCA TCGA-A8-A075 HS3ST5 SNP Missense_Mutation 6 114378677 G A 35 100 BRCA TCGA-A8-A075 SFRS3 SNP Splice_site 6 36564541 T A 51 92 BRCA TCGA-A8-A075 SFRS3 SNP Missense_Mutation 6 36564556 G T 48 100 BRCA TCGA-A8-A075 RUNX2 SNP Silent 6 45513000 C T 29 62 BRCA TCGA-A8-A075 PRIM2 SNP Missense_Mutation 6 57244754 G A 36 48 BRCA TCGA-A8-A075 KHDRBS2 SNP Silent 6 62390919 C T 27 14 BRCA TCGA-A8-A075 CYB5R4 SNP Missense_Mutation 6 84574045 G C 33 96 BRCA TCGA-A8-A075 NT5E SNP Missense_Mutation 6 86201757 C G 32 82 BRCA TCGA-A8-A075 DDX56 SNP Silent 7 44612006 G A 45 55 BRCA TCGA-A8-A075 ABCA13 SNP Missense_Mutation 7 48315435 C G 20 57 BRCA TCGA-A8-A075 PCLO SNP Missense_Mutation 7 82582602 G A 41 94 BRCA TCGA-A8-A075 TMEM74 SNP Missense_Mutation 8 109796543 C T 31 100 BRCA TCGA-A8-A075 SCRT1 SNP Missense_Mutation 8 145559756 G A 40 69 BRCA TCGA-A8-A075 CYHR1 SNP Missense_Mutation 8 145678614 C T 25 97 BRCA TCGA-A8-A075 RGS20 SNP Missense_Mutation 8 54866817 G C 33 99 BRCA TCGA-A8-A075 YTHDF3 SNP Missense_Mutation 8 64099880 C G 32 73 BRCA TCGA-A8-A075 TMEM70 SNP Missense_Mutation 8 74893669 A G 12 89 BRCA TCGA-A8-A075 SMC2 SNP Missense_Mutation 9 106887243 G A 33 94 BRCA TCGA-A8-A075 ADAMTSL1 SNP Missense_Mutation 9 18906875 A C 2 66 BRCA TCGA-A8-A075 STOML2 SNP Silent 9 35101259 C T 30 69 BRCA TCGA-A8-A075 FAM166B SNP Missense_Mutation 9 35562545 G A 39 60 BRCA TCGA-A8-A075 RNF38 SNP Silent 9 36344831 A G 3 53 BRCA TCGA-A8-A075 DAPK1 SNP Silent 9 90252867 T A 59 50 BRCA TCGA-A8-A075 SHC3 SNP Missense_Mutation 9 91660705 C T 30 63 BRCA TCGA-A8-A076 TCEANC2 SNP Silent 1 54561996 G A 40 53 BRCA TCGA-A8-A076 GAD2 SNP Missense_Mutation 10 26534867 G C 33 70 BRCA TCGA-A8-A076 ANK3 SNP Missense_Mutation 10 61830358 C A 29 54 BRCA TCGA-A8-A076 SFTPD SNP Missense_Mutation 10 81701721 G C 48 60 BRCA TCGA-A8-A076 TMPRSS13 SNP Missense_Mutation 11 117774452 C G 26 95 BRCA TCGA-A8-A076 PCF11 SNP Missense_Mutation 11 82877321 C G 17 67 BRCA TCGA-A8-A076 GNPTAB SNP Missense_Mutation 12 102159934 T C 50 89 BRCA TCGA-A8-A076 ACACB SNP Missense_Mutation 12 109704092 C A 26 53 BRCA TCGA-A8-A076 CIT SNP Missense_Mutation 12 120173024 C A 20 100 BRCA TCGA-A8-A076 DUSP16 SNP Nonsense_Mutation 12 12630478 G C 36 62 BRCA TCGA-A8-A076 SLCO1B7 SNP Missense_Mutation 12 21196298 G A 40 74 BRCA TCGA-A8-A076 MLL2 SNP Missense_Mutation 12 49427744 G A 39 99 BRCA TCGA-A8-A076 LRP1 SNP Missense_Mutation 12 57573216 G A 37 95 BRCA TCGA-A8-A076 SRGAP1 SNP Missense_Mutation 12 64519802 G A 39 100 BRCA TCGA-A8-A076 FLT3 SNP Missense_Mutation 13 28610163 C T 27 56 BRCA TCGA-A8-A076 PDS5B SNP Missense_Mutation 13 33273935 G A 45 100 BRCA TCGA-A8-A076 WDR20 SNP Silent 14 102675570 C A 19 72 BRCA TCGA-A8-A076 TGM1 SNP Silent 14 24718579 G A 40 31 BRCA TCGA-A8-A076 BAZ1A SNP Missense_Mutation 14 35240774 T C 52 52 BRCA TCGA-A8-A076 SAMD15 SNP Missense_Mutation 14 77844210 T G 62 45 BRCA TCGA-A8-A076 OTOA SNP Silent 16 21712289 G A 40 43 BRCA TCGA-A8-A076 HYDIN SNP Missense_Mutation 16 70977777 C T 23 87 BRCA TCGA-A8-A076 MYO18A SNP Missense_Mutation 17 27493334 G A 43 50 BRCA TCGA-A8-A076 RPL19 SNP Silent 17 37358625 G A 39 46 BRCA TCGA-A8-A076 AOC3 SNP Nonsense_Mutation 17 41003862 C T 23 52 BRCA TCGA-A8-A076 BRIP1 SNP Missense_Mutation 17 59763364 G A 33 54 BRCA TCGA-A8-A076 HAS1 SNP Missense_Mutation 19 52217341 G A 41 87 BRCA TCGA-A8-A076 ZNF266 SNP Missense_Mutation 19 9525219 G A 40 44 BRCA TCGA-A8-A076 IL1RL2 SNP Missense_Mutation 2 102851497 G A 39 72 BRCA TCGA-A8-A076 TRIB2 SNP Missense_Mutation 2 12863563 G A 41 98 BRCA TCGA-A8-A076 TRAK2 SNP Nonsense_Mutation 2 202260102 G A 37 60 BRCA TCGA-A8-A076 IKZF2 SNP Silent 2 213872645 C T 27 49 BRCA TCGA-A8-A076 LTBP1 SNP Missense_Mutation 2 33622241 G C 39 100 BRCA TCGA-A8-A076 XPNPEP3 SNP Splice_site 22 41320367 C A 28 78 BRCA TCGA-A8-A076 GABRA3 SNP Missense_Mutation 23 151376601 G A 34 73 BRCA TCGA-A8-A076 BSN SNP Silent 3 49701899 C T 23 44 BRCA TCGA-A8-A076 BBS7 SNP Silent 4 122765151 A G 8 66 BRCA TCGA-A8-A076 TRIML1 SNP Missense_Mutation 4 189068456 C T 30 70 BRCA TCGA-A8-A076 CDKL3 SNP Missense_Mutation 5 133644137 C A 28 53 BRCA TCGA-A8-A076 KIAA0947 SNP Missense_Mutation 5 5437196 T A 52 56 BRCA TCGA-A8-A076 FNDC1 SNP Missense_Mutation 6 159646577 G A 40 99 BRCA TCGA-A8-A076 CUL7 SNP Missense_Mutation 6 43016263 G T 33 64 BRCA TCGA-A8-A076 F13A1 SNP Missense_Mutation 6 6197531 T A 50 87 BRCA TCGA-A8-A076 RIMS1 SNP Missense_Mutation 6 73110213 G A 33 100 BRCA TCGA-A8-A076 MTO1 SNP Missense_Mutation 6 74191938 A T 12 92 BRCA TCGA-A8-A076 MANEA SNP Missense_Mutation 6 96054057 G A 38 98 BRCA TCGA-A8-A076 PIK3CG SNP Missense_Mutation 7 106526628 G C 36 88 BRCA TCGA-A8-A076 LAMB4 SNP Missense_Mutation 7 107717436 G T 42 48 BRCA TCGA-A8-A076 THSD7A SNP Missense_Mutation 7 11521471 G A 40 76 BRCA TCGA-A8-A076 LRGUK SNP Missense_Mutation 7 133884081 G A 40 71 BRCA TCGA-A8-A076 PKD1L1 SNP Missense_Mutation 7 47852858 A T 11 41 BRCA TCGA-A8-A076 ZNF716 SNP Nonsense_Mutation 7 57528714 A T 9 72 BRCA TCGA-A8-A076 RIMS2 SNP Missense_Mutation 8 104955015 A C 15 59 BRCA TCGA-A8-A076 TNFRSF10A SNP Silent 8 23069723 G A 37 38 BRCA TCGA-A8-A076 ADAMDEC1 SNP Missense_Mutation 8 24256522 A G 9 48 BRCA TCGA-A8-A076 CSMD1 SNP Missense_Mutation 8 3266956 G T 43 100 BRCA TCGA-A8-A076 NSMAF SNP Missense_Mutation 8 59502584 G T 33 94 BRCA TCGA-A8-A076 LRSAM1 SNP Missense_Mutation 9 130236137 A G 12 73 BRCA TCGA-A8-A079 HCN3 SNP Missense_Mutation 1 155257006 G A 39 94 BRCA TCGA-A8-A079 OR2T6 SNP Silent 1 248551590 G A 33 50 BRCA TCGA-A8-A079 KAT6B SNP Missense_Mutation 10 76748864 G A 45 100 BRCA TCGA-A8-A079 ANKS1B SNP Missense_Mutation 12 100206055 A C 12 68 BRCA TCGA-A8-A079 MYO1H SNP Missense_Mutation 12 109843800 C A 26 78 BRCA TCGA-A8-A079 CLIP1 SNP Missense_Mutation 12 122848621 G A 33 66 BRCA TCGA-A8-A079 RIMBP2 SNP Silent 12 130926628 G A 39 40 BRCA TCGA-A8-A079 RIMBP2 SNP Silent 12 130927141 G A 40 49 BRCA TCGA-A8-A079 CNTN1 SNP Missense_Mutation 12 41421662 C T 24 92 BRCA TCGA-A8-A079 LOC100289089 DEL In_Frame_Del 15 26244768 TTT - 56 60 BRCA TCGA-A8-A079 SLC12A6 SNP Missense_Mutation 15 34533532 C G 32 68 BRCA TCGA-A8-A079 FBN1 SNP Silent 15 48704844 G A 40 47 BRCA TCGA-A8-A079 APH1B SNP Missense_Mutation 15 63594553 C T 19 89 BRCA TCGA-A8-A079 ADCY9 SNP Missense_Mutation 16 4016237 C T 23 100 BRCA TCGA-A8-A079 DNAAF1 SNP Silent 16 84203706 G A 40 50 BRCA TCGA-A8-A079 LGALS9B SNP Missense_Mutation 17 20356373 G A 48 51 BRCA TCGA-A8-A079 KCNJ12 SNP Missense_Mutation 17 21319388 C T 23 100 BRCA TCGA-A8-A079 GJC1 SNP Missense_Mutation 17 42883150 C G 32 84 BRCA TCGA-A8-A079 UBE2O SNP Missense_Mutation 17 74387082 G A 40 50 BRCA TCGA-A8-A079 TP53 SNP Missense_Mutation 17 7578205 C A 20 96 BRCA TCGA-A8-A079 HAUS1 SNP Missense_Mutation 18 43685277 G T 41 84 BRCA TCGA-A8-A079 CACNA1A SNP Missense_Mutation 19 13470592 G A 39 60 BRCA TCGA-A8-A079 SUPT5H SNP Missense_Mutation 19 39962333 G T 46 97 BRCA TCGA-A8-A079 NCR1 SNP Missense_Mutation 19 55418015 G A 40 37 BRCA TCGA-A8-A079 ERCC3 SNP Missense_Mutation 2 128051120 T G 56 89 BRCA TCGA-A8-A079 GALNT14 SNP Silent 2 31165080 A C 6 40 BRCA TCGA-A8-A079 CPXM1 SNP Splice_Site 20 2778613 C T 20 80 BRCA TCGA-A8-A079 CHD6 SNP Silent 20 40033794 G A 43 54 BRCA TCGA-A8-A079 GTSE1 SNP Missense_Mutation 22 46704569 A T 11 79 BRCA TCGA-A8-A079 FRMPD3 SNP Silent 23 106769911 C A 28 73 BRCA TCGA-A8-A079 GPR101 SNP Missense_Mutation 23 136113230 C T 19 49 BRCA TCGA-A8-A079 RP2 SNP Nonsense_Mutation 23 46713075 C A 25 54 BRCA TCGA-A8-A079 CLSTN2 SNP Silent 3 140277569 C G 30 49 BRCA TCGA-A8-A079 EIF4A2 SNP Missense_Mutation 3 186505647 C G 18 97 BRCA TCGA-A8-A079 GPR78 SNP Missense_Mutation 4 8588882 C T 32 64 BRCA TCGA-A8-A079 NDST1 SNP Silent 5 149907411 C T 24 70 BRCA TCGA-A8-A079 HEATR7B2 SNP Missense_Mutation 5 41049481 C T 30 52 BRCA TCGA-A8-A079 RPS10 SNP Missense_Mutation 6 34389559 T A 58 49 BRCA TCGA-A8-A079 EYS SNP Missense_Mutation 6 66094305 A C 6 56 BRCA TCGA-A8-A079 HECW1 SNP Nonsense_Mutation 7 43484512 G T 41 83 BRCA TCGA-A8-A079 KCNQ3 SNP Missense_Mutation 8 133141963 C G 31 45 BRCA TCGA-A8-A079 TLN1 SNP Silent 9 35717228 C A 22 38 BRCA TCGA-A8-A079 KANK1 SNP Silent 9 712824 C G 23 25 BRCA TCGA-A8-A07B MOV10 SNP Silent 1 113240703 C T 28 55 BRCA TCGA-A8-A07B THBS3 SNP Missense_Mutation 1 155171777 C G 29 77 BRCA TCGA-A8-A07B ZNF281 SNP Missense_Mutation 1 200376828 G C 41 86 BRCA TCGA-A8-A07B SCCPDH SNP Missense_Mutation 1 246930542 G T 45 72 BRCA TCGA-A8-A07B OR2T34 SNP Silent 1 248737930 G A 43 52 BRCA TCGA-A8-A07B THRAP3 SNP Missense_Mutation 1 36766611 G A 45 77 BRCA TCGA-A8-A07B ZSWIM5 SNP Silent 1 45516765 C T 32 68 BRCA TCGA-A8-A07B CYP4B1 SNP Splice_site 1 47279985 C T 23 52 BRCA TCGA-A8-A07B SIAE SNP Missense_Mutation 11 124518025 G C 33 71 BRCA TCGA-A8-A07B TRIM44 SNP Missense_Mutation 11 35684969 G C 33 54 BRCA TCGA-A8-A07B TRIM44 SNP Nonsense_Mutation 11 35684999 G T 33 63 BRCA TCGA-A8-A07B CTTN SNP Missense_Mutation 11 70256029 G C 41 99 BRCA TCGA-A8-A07B GNPTAB DEL Frame_Shift_Del 12 102164928 A - 5 90 BRCA TCGA-A8-A07B STAB2 SNP Silent 12 104106175 A G 8 40 BRCA TCGA-A8-A07B WSCD2 SNP Missense_Mutation 12 108634315 G A 43 93 BRCA TCGA-A8-A07B TBX5 SNP Missense_Mutation 12 114793477 G C 45 74 BRCA TCGA-A8-A07B SLC38A4 SNP Missense_Mutation 12 47173756 A G 9 93 BRCA TCGA-A8-A07B KRT2 SNP Silent 12 53040550 G T 46 55 BRCA TCGA-A8-A07B DUSP6 SNP Silent 12 89743172 G A 36 80 BRCA TCGA-A8-A07B STARD13 SNP Nonsense_Mutation 13 33859766 G A 45 82 BRCA TCGA-A8-A07B DYNC1H1 SNP Missense_Mutation 14 102481649 G A 42 64 BRCA TCGA-A8-A07B C14orf182 SNP Missense_Mutation 14 50472342 C T 20 56 BRCA TCGA-A8-A07B KTN1 SNP Missense_Mutation 14 56130713 C T 25 97 BRCA TCGA-A8-A07B SNP Silent 15 102292700 C G 30 81 BRCA TCGA-A8-A07B TUBGCP4 SNP Missense_Mutation 15 43687823 C A 29 100 BRCA TCGA-A8-A07B ZNF592 SNP Missense_Mutation 15 85327107 C T 30 68 BRCA TCGA-A8-A07B PRSS22 SNP Silent 16 2906139 G A 38 42 BRCA TCGA-A8-A07B NFAT5 INS Frame_Shift_Ins 16 69726520 - A 29 90 BRCA TCGA-A8-A07B ACACA SNP Silent 17 35454000 A G 7 29 BRCA TCGA-A8-A07B MPP3 SNP Missense_Mutation 17 41888280 G T 41 60 BRCA TCGA-A8-A07B KANSL1 DEL Frame_Shift_Del 17 44117113 G - 37 78 BRCA TCGA-A8-A07B SMG8 SNP Missense_Mutation 17 57288244 G C 33 75 BRCA TCGA-A8-A07B TP53 DEL Frame_Shift_Del 17 7578409 CTCACAACCTCCGTCATGTGCTGTGACTG - 24 55 BRCA TCGA-A8-A07B WDR7 SNP Missense_Mutation 18 54483316 G C 43 87 BRCA TCGA-A8-A07B HOOK2 DEL Frame_Shift_Del 19 12874242 T - 51 53 BRCA TCGA-A8-A07B ZNF431 SNP Missense_Mutation 19 21366706 C T 29 80 BRCA TCGA-A8-A07B RYR1 SNP Silent 19 39025994 C T 28 52 BRCA TCGA-A8-A07B MBOAT7 SNP Missense_Mutation 19 54678109 G C 34 60 BRCA TCGA-A8-A07B SLC25A23 SNP Silent 19 6452443 C T 26 45 BRCA TCGA-A8-A07B CCDC138 SNP Missense_Mutation 2 109489964 C G 32 83 BRCA TCGA-A8-A07B GLI2 SNP Missense_Mutation 2 121726426 C G 29 59 BRCA TCGA-A8-A07B CERS6 SNP Missense_Mutation 2 169312982 C G 32 59 BRCA TCGA-A8-A07B ALS2 SNP Missense_Mutation 2 202606414 G C 33 80 BRCA TCGA-A8-A07B FANCL SNP Missense_Mutation 2 58456952 T A 60 47 BRCA TCGA-A8-A07B ACSS1 SNP Silent 20 24988539 G A 45 60 BRCA TCGA-A8-A07B C20orf96 SNP Silent 20 259038 C T 32 51 BRCA TCGA-A8-A07B WFDC2 SNP Missense_Mutation 20 44108611 A G 8 33 BRCA TCGA-A8-A07B MCM3AP SNP Silent 21 47692480 G A 41 52 BRCA TCGA-A8-A07B TFIP11 SNP Missense_Mutation 22 26890837 C T 29 99 BRCA TCGA-A8-A07B ARMCX1 SNP Missense_Mutation 23 100809228 G A 45 64 BRCA TCGA-A8-A07B MSL3 SNP Silent 23 11783719 C T 32 65 BRCA TCGA-A8-A07B PLXNA3 SNP Missense_Mutation 23 153692754 G A 38 52 BRCA TCGA-A8-A07B PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A07B LEPREL1 SNP Missense_Mutation 3 189705453 C T 29 60 BRCA TCGA-A8-A07B MUC4 SNP Missense_Mutation 3 195492266 C T 19 66 BRCA TCGA-A8-A07B EPHA3 SNP Missense_Mutation 3 89448571 G A 37 87 BRCA TCGA-A8-A07B CCNA2 SNP Missense_Mutation 4 122740585 A G 3 94 BRCA TCGA-A8-A07B OTOP1 SNP Silent 4 4199564 G A 35 49 BRCA TCGA-A8-A07B NOA1 SNP Silent 4 57842681 C G 27 49 BRCA TCGA-A8-A07B PRR3 SNP Missense_Mutation 6 30529872 C T 23 57 BRCA TCGA-A8-A07B CUL9 SNP Silent 6 43155717 C T 23 49 BRCA TCGA-A8-A07B GIGYF1 SNP Missense_Mutation 7 100280053 C T 32 95 BRCA TCGA-A8-A07B SLC13A1 SNP Missense_Mutation 7 122757567 A T 8 53 BRCA TCGA-A8-A07B TRIM24 SNP Nonsense_Mutation 7 138203954 C T 21 97 BRCA TCGA-A8-A07B CLK2P SNP Missense_Mutation 7 23624895 C T 27 51 BRCA TCGA-A8-A07B ZHX1 SNP Missense_Mutation 8 124266785 G A 37 83 BRCA TCGA-A8-A07B PREX2 SNP Missense_Mutation 8 69028146 T C 50 91 BRCA TCGA-A8-A07B STK3 SNP Silent 8 99591915 A G 4 50 BRCA TCGA-A8-A07B CAMSAP1 SNP Silent 9 138714836 C A 23 40 BRCA TCGA-A8-A07B IL11RA SNP Nonsense_Mutation 9 34655616 C T 25 75 BRCA TCGA-A8-A07B VCP SNP Missense_Mutation 9 35067979 C T 19 100 BRCA TCGA-A8-A07B SNP Missense_Mutation 9 78938171 A G 2 83 BRCA TCGA-A8-A07C CASZ1 SNP Missense_Mutation 1 10707928 G A 42 78 BRCA TCGA-A8-A07C TAS1R3 SNP Nonsense_Mutation 1 1268387 C G 19 37 BRCA TCGA-A8-A07C TARS2 SNP Missense_Mutation 1 150469292 G A 41 86 BRCA TCGA-A8-A07C LCE2D SNP Missense_Mutation 1 152636666 C T 30 53 BRCA TCGA-A8-A07C TRIM46 SNP Missense_Mutation 1 155156289 G A 39 90 BRCA TCGA-A8-A07C THBS3 SNP Silent 1 155176016 G C 35 61 BRCA TCGA-A8-A07C FMO1 SNP Silent 1 171251162 C T 25 47 BRCA TCGA-A8-A07C ASTN1 SNP Missense_Mutation 1 176992609 G T 44 99 BRCA TCGA-A8-A07C ITPKB SNP Nonsense_Mutation 1 226825421 G A 37 72 BRCA TCGA-A8-A07C EPHB2 SNP Silent 1 23191470 C T 31 47 BRCA TCGA-A8-A07C IL28RA SNP Silent 1 24496055 C T 20 41 BRCA TCGA-A8-A07C COL16A1 INS In_Frame_Ins 1 32157643 - CGT 30 52 BRCA TCGA-A8-A07C SYNC SNP Missense_Mutation 1 33160900 C G 19 70 BRCA TCGA-A8-A07C ZBTB48 SNP Missense_Mutation 1 6642356 A G 2 88 BRCA TCGA-A8-A07C HERC4 SNP Nonsense_Mutation 10 69832857 G T 34 62 BRCA TCGA-A8-A07C FAM149B1 SNP Missense_Mutation 10 74953317 G A 45 74 BRCA TCGA-A8-A07C PPP3CB SNP Missense_Mutation 10 75230840 G A 33 100 BRCA TCGA-A8-A07C IFIT1B SNP Nonsense_Mutation 10 91143779 G T 33 59 BRCA TCGA-A8-A07C MUC5B DEL In_Frame_Del 11 1263459 CTGTCA - 28 68 BRCA TCGA-A8-A07C HPS5 SNP Missense_Mutation 11 18313238 T C 56 50 BRCA TCGA-A8-A07C RIC8A SNP Missense_Mutation 11 209698 G T 44 64 BRCA TCGA-A8-A07C CKAP5 SNP Missense_Mutation 11 46811734 T C 53 48 BRCA TCGA-A8-A07C OR5M10 SNP Silent 11 56344871 G T 45 50 BRCA TCGA-A8-A07C OR4D10 SNP Missense_Mutation 11 59245434 T C 53 66 BRCA TCGA-A8-A07C CCS SNP Missense_Mutation 11 66367007 C G 22 69 BRCA TCGA-A8-A07C RBM4B SNP Missense_Mutation 11 66444335 A T 16 56 BRCA TCGA-A8-A07C ENSG00000223709 SNP Missense_Mutation 11 89791245 G A 40 34 BRCA TCGA-A8-A07C FAT3 SNP Missense_Mutation 11 92592379 T A 56 89 BRCA TCGA-A8-A07C OAS1 SNP Missense_Mutation 12 113346375 G C 42 53 BRCA TCGA-A8-A07C TULP3 SNP Splice_Site 12 3018748 T A 59 69 BRCA TCGA-A8-A07C COL2A1 DEL Frame_Shift_Del 12 48368057 GGAAG - 35 76 BRCA TCGA-A8-A07C MAP3K12 DEL In_Frame_Del 12 53876961 GAG - 45 61 BRCA TCGA-A8-A07C ZBTB39 SNP Missense_Mutation 12 57398550 G A 46 98 BRCA TCGA-A8-A07C LPCAT3 SNP Missense_Mutation 12 7087665 C T 30 99 BRCA TCGA-A8-A07C LGR5 SNP Silent 12 71978445 G C 46 48 BRCA TCGA-A8-A07C PZP SNP Silent 12 9321484 T A 53 47 BRCA TCGA-A8-A07C ANKS1B SNP Missense_Mutation 12 99192725 C G 17 98 BRCA TCGA-A8-A07C SPG20 SNP Missense_Mutation 13 36886599 G C 36 76 BRCA TCGA-A8-A07C EDNRB SNP Silent 13 78492256 G A 37 58 BRCA TCGA-A8-A07C FRMD6 SNP Missense_Mutation 14 52171538 G T 37 77 BRCA TCGA-A8-A07C ESR2 SNP Silent 14 64746760 T G 50 49 BRCA TCGA-A8-A07C DISP2 SNP Missense_Mutation 15 40661498 C T 26 99 BRCA TCGA-A8-A07C MYO5C SNP Nonsense_Mutation 15 52553129 C A 30 65 BRCA TCGA-A8-A07C LOC100288997 SNP Missense_Mutation 15 91493657 T G 56 47 BRCA TCGA-A8-A07C SLC5A11 SNP Missense_Mutation 16 24919344 C A 26 61 BRCA TCGA-A8-A07C PSKH1 SNP Missense_Mutation 16 67942933 T A 60 91 BRCA TCGA-A8-A07C HDAC5 SNP Missense_Mutation 17 42170479 G A 43 71 BRCA TCGA-A8-A07C FMNL1 SNP Silent 17 43314958 G A 46 53 BRCA TCGA-A8-A07C HOXB2 SNP Missense_Mutation 17 46622173 G A 36 82 BRCA TCGA-A8-A07C ENO3 SNP Missense_Mutation 17 4856110 C G 26 93 BRCA TCGA-A8-A07C MSI2 SNP Missense_Mutation 17 55674274 T C 58 90 BRCA TCGA-A8-A07C DNAH2 SNP Missense_Mutation 17 7663178 A T 6 63 BRCA TCGA-A8-A07C SPDYE4 SNP Missense_Mutation 17 8660710 C G 20 50 BRCA TCGA-A8-A07C CEP76 SNP Missense_Mutation 18 12678227 G A 41 86 BRCA TCGA-A8-A07C ANKRD30B SNP Missense_Mutation 18 14782608 T C 57 50 BRCA TCGA-A8-A07C ZNF69 SNP Missense_Mutation 19 12015904 G A 48 41 BRCA TCGA-A8-A07C ARRDC2 SNP Silent 19 18120412 G C 39 25 BRCA TCGA-A8-A07C GPATCH1 SNP Silent 19 33585132 A G 11 59 BRCA TCGA-A8-A07C HKR1 SNP Nonsense_Mutation 19 37853955 C T 25 71 BRCA TCGA-A8-A07C CADM4 SNP Missense_Mutation 19 44130299 G A 40 71 BRCA TCGA-A8-A07C ZNF283 SNP Missense_Mutation 19 44351903 T A 64 82 BRCA TCGA-A8-A07C ZNF233 SNP Missense_Mutation 19 44777622 G A 42 21 BRCA TCGA-A8-A07C HDGFRP2 SNP Missense_Mutation 19 4496327 C A 30 47 BRCA TCGA-A8-A07C ZC3H4 DEL In_Frame_Del 19 47615759 GAAGGCGTT - 37 67 BRCA TCGA-A8-A07C RPL18 SNP Missense_Mutation 19 49119404 C A 26 91 BRCA TCGA-A8-A07C CRB3 SNP Missense_Mutation 19 6465589 T C 60 43 BRCA TCGA-A8-A07C MCOLN1 SNP Silent 19 7593049 G A 40 30 BRCA TCGA-A8-A07C DARS SNP Missense_Mutation 2 136678156 C A 32 100 BRCA TCGA-A8-A07C SCN1A SNP Missense_Mutation 2 166850747 C G 20 52 BRCA TCGA-A8-A07C TTN SNP Missense_Mutation 2 179463526 C T 19 75 BRCA TCGA-A8-A07C ASNSD1 SNP Missense_Mutation 2 190531576 C T 18 100 BRCA TCGA-A8-A07C ERBB4 SNP Missense_Mutation 2 212989493 T A 58 92 BRCA TCGA-A8-A07C TNP1 SNP Missense_Mutation 2 217724400 G C 41 76 BRCA TCGA-A8-A07C STK11IP SNP Missense_Mutation 2 220479214 G T 33 57 BRCA TCGA-A8-A07C GAL3ST2 SNP Missense_Mutation 2 242742878 C G 23 47 BRCA TCGA-A8-A07C DHX57 SNP Missense_Mutation 2 39046255 T A 60 77 BRCA TCGA-A8-A07C VPS54 SNP Missense_Mutation 2 64148377 T C 51 87 BRCA TCGA-A8-A07C DNAH6 SNP Missense_Mutation 2 84897461 G T 46 66 BRCA TCGA-A8-A07C RETSAT SNP Nonsense_Mutation 2 85570864 G A 39 62 BRCA TCGA-A8-A07C ZNF514 SNP Silent 2 95815408 A T 11 50 BRCA TCGA-A8-A07C ANKRD36C SNP Missense_Mutation 2 96546190 G C 48 59 BRCA TCGA-A8-A07C PREX1 SNP Missense_Mutation 20 47251259 T A 63 76 BRCA TCGA-A8-A07C HUNK SNP Missense_Mutation 21 33355870 A G 3 66 BRCA TCGA-A8-A07C ETS2 SNP Missense_Mutation 21 40186899 A T 12 59 BRCA TCGA-A8-A07C MX2 SNP Missense_Mutation 21 42748967 T G 64 20 BRCA TCGA-A8-A07C COL18A1 SNP Nonsense_Mutation 21 46888327 C A 29 95 BRCA TCGA-A8-A07C MCM3AP SNP Silent 21 47663506 G A 46 61 BRCA TCGA-A8-A07C MYO18B SNP Missense_Mutation 22 26422632 G A 39 40 BRCA TCGA-A8-A07C XPNPEP3 SNP Missense_Mutation 22 41282335 G C 47 94 BRCA TCGA-A8-A07C PNPLA3 SNP Missense_Mutation 22 44328855 C T 24 98 BRCA TCGA-A8-A07C LOC286528 SNP Missense_Mutation 23 113625316 A G 4 79 BRCA TCGA-A8-A07C ODZ1 SNP Nonsense_Mutation 23 123695609 C T 26 99 BRCA TCGA-A8-A07C FRMD7 SNP Missense_Mutation 23 131212279 C A 24 87 BRCA TCGA-A8-A07C SAGE1 SNP Missense_Mutation 23 134995008 A G 15 53 BRCA TCGA-A8-A07C EIF1AX SNP Missense_Mutation 23 20148683 T G 50 84 BRCA TCGA-A8-A07C POLA1 SNP Missense_Mutation 23 24745162 C A 24 94 BRCA TCGA-A8-A07C PAGE1 SNP Missense_Mutation 23 49459343 G A 38 50 BRCA TCGA-A8-A07C AKAP4 SNP Missense_Mutation 23 49957662 C T 32 62 BRCA TCGA-A8-A07C NHSL2 SNP Missense_Mutation 23 71358701 C A 30 53 BRCA TCGA-A8-A07C NAP1L2 SNP Missense_Mutation 23 72434297 G A 45 54 BRCA TCGA-A8-A07C TM4SF1 SNP Missense_Mutation 3 149095318 C A 17 85 BRCA TCGA-A8-A07C MED12L SNP Silent 3 151107820 C G 24 55 BRCA TCGA-A8-A07C IGSF10 SNP Missense_Mutation 3 151165107 G C 45 63 BRCA TCGA-A8-A07C MECOM SNP Silent 3 168833701 C T 23 52 BRCA TCGA-A8-A07C ACTRT3 SNP Missense_Mutation 3 169485849 T A 51 58 BRCA TCGA-A8-A07C VILL SNP Missense_Mutation 3 38035842 G A 46 71 BRCA TCGA-A8-A07C FYCO1 SNP Missense_Mutation 3 46021263 G T 33 76 BRCA TCGA-A8-A07C NBEAL2 SNP Missense_Mutation 3 47033996 G C 43 71 BRCA TCGA-A8-A07C SCAP SNP Missense_Mutation 3 47463968 G A 41 55 BRCA TCGA-A8-A07C PCBP4 SNP Splice_Site 3 51993381 A T 6 62 BRCA TCGA-A8-A07C DNAH1 SNP Missense_Mutation 3 52382948 G C 36 60 BRCA TCGA-A8-A07C ELOVL6 SNP Missense_Mutation 4 110972768 G T 42 89 BRCA TCGA-A8-A07C WDR17 SNP Missense_Mutation 4 177071740 G C 33 55 BRCA TCGA-A8-A07C WHSC1 SNP Missense_Mutation 4 1953848 C G 23 77 BRCA TCGA-A8-A07C ZNF732 SNP Missense_Mutation 4 266210 G T 48 54 BRCA TCGA-A8-A07C RUFY3 INS Splice_site 4 71654523 - A 41 100 BRCA TCGA-A8-A07C MCC SNP Missense_Mutation 5 112458465 T A 63 83 BRCA TCGA-A8-A07C FNIP1 SNP Missense_Mutation 5 130778206 C A 32 62 BRCA TCGA-A8-A07C FSTL4 SNP Missense_Mutation 5 132535227 C T 31 92 BRCA TCGA-A8-A07C FAM71B SNP Missense_Mutation 5 156590407 C G 20 59 BRCA TCGA-A8-A07C SH3PXD2B SNP Missense_Mutation 5 171765983 G A 42 57 BRCA TCGA-A8-A07C ZFR SNP Missense_Mutation 5 32355898 T C 62 89 BRCA TCGA-A8-A07C FST SNP Missense_Mutation 5 52779526 A G 9 93 BRCA TCGA-A8-A07C IQGAP2 SNP Silent 5 75993880 G C 45 71 BRCA TCGA-A8-A07C BRD9 SNP Silent 5 870649 C T 20 46 BRCA TCGA-A8-A07C PRDM1 SNP Silent 6 106553637 C A 24 78 BRCA TCGA-A8-A07C ENPP5 SNP Missense_Mutation 6 46129132 T G 61 66 BRCA TCGA-A8-A07C DST SNP Missense_Mutation 6 56458895 G T 41 68 BRCA TCGA-A8-A07C ACHE SNP Missense_Mutation 7 100487763 C T 22 75 BRCA TCGA-A8-A07C FLNC SNP Missense_Mutation 7 128491632 G A 38 74 BRCA TCGA-A8-A07C FAM115A SNP Silent 7 143573579 C A 29 54 BRCA TCGA-A8-A07C GIMAP7 SNP Missense_Mutation 7 150217141 A G 6 63 BRCA TCGA-A8-A07C AEBP1 SNP Missense_Mutation 7 44152266 C G 26 66 BRCA TCGA-A8-A07C AKAP9 SNP Missense_Mutation 7 91709195 G C 33 61 BRCA TCGA-A8-A07C PKHD1L1 SNP Missense_Mutation 8 110457322 T C 62 55 BRCA TCGA-A8-A07C FAM49B SNP Missense_Mutation 8 130861491 C G 29 99 BRCA TCGA-A8-A07C TRAPPC9 SNP Missense_Mutation 8 141285887 A C 8 49 BRCA TCGA-A8-A07C PARP10 DEL Frame_Shift_Del 8 145058963 TTTCCACCAGGCCC - 52 43 BRCA TCGA-A8-A07C PREX2 SNP Missense_Mutation 8 68982088 C T 31 82 BRCA TCGA-A8-A07C ZFHX4 SNP Missense_Mutation 8 77617392 G T 37 98 BRCA TCGA-A8-A07C FABP4 DEL In_Frame_Del 8 82395335 TCTTTCATATAA - 62 73 BRCA TCGA-A8-A07C COL15A1 SNP Missense_Mutation 9 101796852 T G 54 56 BRCA TCGA-A8-A07C CEL SNP Missense_Mutation 9 135946377 C A 18 66 BRCA TCGA-A8-A07C BNC2 SNP Nonsense_Mutation 9 16738360 C A 29 58 BRCA TCGA-A8-A07E PRAMEF4 SNP Missense_Mutation 1 12941807 C T 27 33 BRCA TCGA-A8-A07E PQLC2 SNP Missense_Mutation 1 19655106 C T 26 58 BRCA TCGA-A8-A07E CTSE SNP Missense_Mutation 1 206319212 G A 34 81 BRCA TCGA-A8-A07E LAMB3 SNP Missense_Mutation 1 209790889 T A 51 54 BRCA TCGA-A8-A07E NEK2 SNP Missense_Mutation 1 211848787 T C 57 59 BRCA TCGA-A8-A07E FMN2 DEL Frame_Shift_Del 1 240255574 C - 27 54 BRCA TCGA-A8-A07E TXNDC12 SNP Missense_Mutation 1 52494264 C T 17 87 BRCA TCGA-A8-A07E CACNB2 SNP Missense_Mutation 10 18787302 G A 46 100 BRCA TCGA-A8-A07E ATM SNP Missense_Mutation 11 108192065 G A 45 96 BRCA TCGA-A8-A07E FEZ1 SNP Missense_Mutation 11 125325768 C T 28 62 BRCA TCGA-A8-A07E MED13L SNP Missense_Mutation 12 116450669 G A 42 51 BRCA TCGA-A8-A07E CDKN1B SNP Nonsense_Mutation 12 12870853 C A 31 92 BRCA TCGA-A8-A07E DYNC1H1 SNP Nonsense_Mutation 14 102467878 G T 33 88 BRCA TCGA-A8-A07E LRRC16B SNP Missense_Mutation 14 24524512 G A 41 89 BRCA TCGA-A8-A07E SIX4 SNP Missense_Mutation 14 61186564 T C 52 63 BRCA TCGA-A8-A07E CEP128 SNP Missense_Mutation 14 81297497 G A 45 51 BRCA TCGA-A8-A07E MAP1A SNP Missense_Mutation 15 43813948 G A 33 99 BRCA TCGA-A8-A07E MAP1A SNP Missense_Mutation 15 43814110 G C 45 99 BRCA TCGA-A8-A07E MAP1A SNP Silent 15 43814496 G A 33 60 BRCA TCGA-A8-A07E MAP1A SNP Missense_Mutation 15 43814971 G A 45 71 BRCA TCGA-A8-A07E MAP1A SNP Silent 15 43817718 G A 45 60 BRCA TCGA-A8-A07E MAP1A SNP Missense_Mutation 15 43818874 G A 33 63 BRCA TCGA-A8-A07E FAM227B SNP Missense_Mutation 15 49620836 A T 12 53 BRCA TCGA-A8-A07E EDC4 SNP Missense_Mutation 16 67911254 G A 41 100 BRCA TCGA-A8-A07E KIF2B SNP Missense_Mutation 17 51901164 G A 38 78 BRCA TCGA-A8-A07E MYO9B SNP Missense_Mutation 19 17212961 A G 7 63 BRCA TCGA-A8-A07E PSG1 SNP Missense_Mutation 19 43375943 C T 29 51 BRCA TCGA-A8-A07E ZNF534 SNP Missense_Mutation 19 52942200 G A 48 67 BRCA TCGA-A8-A07E TMC4 SNP Missense_Mutation 19 54665951 C T 31 65 BRCA TCGA-A8-A07E LILRA3 SNP Missense_Mutation 19 54803069 C T 27 36 BRCA TCGA-A8-A07E GP6 SNP Splice_Site 19 55543873 C T 18 69 BRCA TCGA-A8-A07E MYO1F SNP Missense_Mutation 19 8615476 C T 23 92 BRCA TCGA-A8-A07E NCK2 SNP Missense_Mutation 2 106471553 G T 41 100 BRCA TCGA-A8-A07E TTN SNP Missense_Mutation 2 179456109 C T 31 100 BRCA TCGA-A8-A07E TTC32 SNP Missense_Mutation 2 20101597 C T 32 51 BRCA TCGA-A8-A07E ABCB6 INS Frame_Shift_Ins 2 220082498 - T 6 70 BRCA TCGA-A8-A07E FARP2 INS Frame_Shift_Ins 2 242402858 - T 37 70 BRCA TCGA-A8-A07E SLC4A5 SNP Missense_Mutation 2 74452069 G T 40 48 BRCA TCGA-A8-A07E LRP5L SNP Missense_Mutation 22 25750714 C A 18 59 BRCA TCGA-A8-A07E CACNA1I SNP Missense_Mutation 22 40069992 C T 17 96 BRCA TCGA-A8-A07E RBMXL3 SNP Silent 23 114425006 C T 25 59 BRCA TCGA-A8-A07E ARHGAP36 SNP Silent 23 130219991 G T 47 63 BRCA TCGA-A8-A07E PHF6 SNP Missense_Mutation 23 133527637 G A 37 72 BRCA TCGA-A8-A07E CHM SNP Missense_Mutation 23 85128090 A T 4 55 BRCA TCGA-A8-A07E IFT122 SNP Nonsense_Mutation 3 129180117 C T 29 95 BRCA TCGA-A8-A07E TOPBP1 SNP Silent 3 133327397 A G 5 49 BRCA TCGA-A8-A07E ANKRD28 DEL Frame_Shift_Del 3 15751224 GG - 35 89 BRCA TCGA-A8-A07E PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA TCGA-A8-A07E CCR5 DEL In_Frame_Del 3 46415073 AGA - 11 58 BRCA TCGA-A8-A07E OTUD4 SNP Missense_Mutation 4 146076763 A G 15 83 BRCA TCGA-A8-A07E LOC441016 SNP Missense_Mutation 4 54442456 C T 22 52 BRCA TCGA-A8-A07E CYFIP2 SNP Missense_Mutation 5 156747679 C G 31 87 BRCA TCGA-A8-A07E ARG1 SNP Missense_Mutation 6 131897807 G A 37 76 BRCA TCGA-A8-A07E VWA7 SNP Silent 6 31741189 A G 5 51 BRCA TCGA-A8-A07E MDN1 SNP Missense_Mutation 6 90418279 C G 30 68 BRCA TCGA-A8-A07E MLL3 SNP Missense_Mutation 7 151960160 G A 45 98 BRCA TCGA-A8-A07E RHBDD2 SNP Missense_Mutation 7 75513141 G A 37 83 BRCA TCGA-A8-A07E SPDYE3 SNP Missense_Mutation 7 99912241 G A 33 54 BRCA TCGA-A8-A07E TMEM64 DEL In_Frame_Del 8 91657590 TGAGCACGA - 63 74 BRCA TCGA-A8-A07E GLE1 DEL In_Frame_Del 9 131296055 GAA - 41 100 BRCA TCGA-A8-A07E GLE1 DEL Frame_Shift_Del 9 131296060 GGCC - 47 63 BRCA TCGA-A8-A07E TLN1 DEL Frame_Shift_Del 9 35706019 T - 55 46 BRCA TCGA-A8-A07F FMO5 SNP Missense_Mutation 1 146684013 A T 4 90 BRCA TCGA-A8-A07F ITPKB SNP Missense_Mutation 1 226923335 A G 11 86 BRCA TCGA-A8-A07F RYR2 SNP Silent 1 237947633 G A 39 31 BRCA TCGA-A8-A07F OR14C36 SNP Silent 1 248512787 C T 21 46 BRCA TCGA-A8-A07F KIAA1462 SNP Missense_Mutation 10 30336579 C T 27 58 BRCA TCGA-A8-A07F PIK3AP1 SNP Silent 10 98469721 G A 48 58 BRCA TCGA-A8-A07F OR51E1 SNP Missense_Mutation 11 4674666 C T 27 59 BRCA TCGA-A8-A07F P2RY6 SNP Missense_Mutation 11 73008182 G T 46 73 BRCA TCGA-A8-A07F AHNAK2 SNP Missense_Mutation 14 105419083 G A 39 55 BRCA TCGA-A8-A07F PTGER2 SNP Missense_Mutation 14 52781936 C T 23 79 BRCA TCGA-A8-A07F ZFP36L1 SNP Missense_Mutation 14 69256761 T G 57 76 BRCA TCGA-A8-A07F OTOA SNP Silent 16 21728239 G A 39 46 BRCA TCGA-A8-A07F CDH1 DEL Frame_Shift_Del 16 68857331 ATGGCCT - 12 77 BRCA TCGA-A8-A07F SGSM2 SNP Missense_Mutation 17 2264988 G T 38 74 BRCA TCGA-A8-A07F CD300E SNP Missense_Mutation 17 72613482 C T 31 53 BRCA TCGA-A8-A07F DNAH17 SNP Silent 17 76567042 G A 39 20 BRCA TCGA-A8-A07F BAZ2B SNP Missense_Mutation 2 160182317 G C 33 95 BRCA TCGA-A8-A07F PLB1 SNP Splice_Site 2 28827627 G T 44 79 BRCA TCGA-A8-A07F PRND SNP Missense_Mutation 20 4705388 G A 38 52 BRCA TCGA-A8-A07F HTR2C SNP Missense_Mutation 23 114082686 G A 40 69 BRCA TCGA-A8-A07F DNAJC19 SNP Silent 3 180702454 A G 1 59 BRCA TCGA-A8-A07F SLC26A6 SNP Missense_Mutation 3 48664481 C G 28 56 BRCA TCGA-A8-A07F WDR17 SNP Missense_Mutation 4 177071638 A G 4 89 BRCA TCGA-A8-A07F GPRIN3 SNP Silent 4 90170956 C A 25 44 BRCA TCGA-A8-A07F PCDHA6 SNP Missense_Mutation 5 140209877 C T 27 56 BRCA TCGA-A8-A07F MAP3K1 DEL Frame_Shift_Del 5 56178146 A - 12 71 BRCA TCGA-A8-A07F MAP3K1 DEL Frame_Shift_Del 5 56178150 ACTT - 2 56 BRCA TCGA-A8-A07F LRP11 SNP Silent 6 150174187 G A 41 61 BRCA TCGA-A8-A07F WTAP SNP Nonsense_Mutation 6 160163165 C A 17 73 BRCA TCGA-A8-A07F HIST1H2AM SNP Nonsense_Mutation 6 27860570 T A 62 87 BRCA TCGA-A8-A07F TUBB2A SNP Missense_Mutation 6 3154882 C T 27 99 BRCA TCGA-A8-A07F BAI3 SNP Silent 6 70071317 G A 45 52 BRCA TCGA-A8-A07F ADCY1 SNP Missense_Mutation 7 45632382 G A 40 56 BRCA TCGA-A8-A07F POM121L12 SNP Missense_Mutation 7 53104223 G T 44 62 BRCA TCGA-A8-A07F MRPL15 SNP Missense_Mutation 8 55049108 G A 48 100 BRCA TCGA-A8-A07G RPTN SNP Missense_Mutation 1 152128071 G A 42 40 BRCA TCGA-A8-A07G PLA2G4A SNP Missense_Mutation 1 186925327 C G 28 74 BRCA TCGA-A8-A07G AKR7A3 SNP Missense_Mutation 1 19612756 G C 35 73 BRCA TCGA-A8-A07G KIAA1383 SNP Nonsense_Mutation 1 232940798 G A 47 49 BRCA TCGA-A8-A07G BMS1 SNP Missense_Mutation 10 43287948 G A 33 97 BRCA TCGA-A8-A07G GRID1 SNP Missense_Mutation 10 87407077 C T 31 70 BRCA TCGA-A8-A07G DSCAML1 SNP Silent 11 117375739 C T 25 44 BRCA TCGA-A8-A07G OR56A4 SNP Missense_Mutation 11 6023911 C A 17 60 BRCA TCGA-A8-A07G ARHGEF17 SNP Silent 11 73022275 C T 21 54 BRCA TCGA-A8-A07G MTNR1B SNP Silent 11 92714860 C A 22 34 BRCA TCGA-A8-A07G WSCD2 SNP Nonsense_Mutation 12 108604055 C T 25 79 BRCA TCGA-A8-A07G KRT6C SNP Missense_Mutation 12 52867484 C T 28 52 BRCA TCGA-A8-A07G OR4L1 SNP Silent 14 20528300 C T 24 47 BRCA TCGA-A8-A07G CHD8 SNP Silent 14 21871620 G A 41 63 BRCA TCGA-A8-A07G SPTB SNP Silent 14 65253821 G A 41 50 BRCA TCGA-A8-A07G SHC4 SNP Missense_Mutation 15 49148314 C A 18 62 BRCA TCGA-A8-A07G OAZ2 SNP Missense_Mutation 15 64995230 G T 48 73 BRCA TCGA-A8-A07G MCTP2 SNP Missense_Mutation 15 94983504 G T 44 65 BRCA TCGA-A8-A07G NLRC3 SNP Splice_Site 16 3611702 C A 18 93 BRCA TCGA-A8-A07G TOX3 SNP Missense_Mutation 16 52473645 G A 43 98 BRCA TCGA-A8-A07G MPP3 SNP Missense_Mutation 17 41888564 C G 24 94 BRCA TCGA-A8-A07G MAST1 SNP Missense_Mutation 19 12979955 A G 10 86 BRCA TCGA-A8-A07G THEG SNP Missense_Mutation 19 362223 C G 29 54 BRCA TCGA-A8-A07G IL28A SNP Missense_Mutation 19 39759482 G T 35 44 BRCA TCGA-A8-A07G LOC100289293 SNP Missense_Mutation 2 132724061 G A 40 51 BRCA TCGA-A8-A07G TPO SNP Missense_Mutation 2 1546242 T A 54 50 BRCA TCGA-A8-A07G RSAD2 SNP Missense_Mutation 2 7018164 A C 6 88 BRCA TCGA-A8-A07G KCNG1 SNP Missense_Mutation 20 49621081 C T 23 99 BRCA TCGA-A8-A07G RAB40A SNP Nonsense_Mutation 23 102755366 G A 37 50 BRCA TCGA-A8-A07G ZCCHC16 SNP Nonsense_Mutation 23 111698734 C T 27 54 BRCA TCGA-A8-A07G AWAT1 SNP Missense_Mutation 23 69459689 G A 40 51 BRCA TCGA-A8-A07G CASR SNP Missense_Mutation 3 122003481 G A 40 63 BRCA TCGA-A8-A07G PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A07G RXFP1 DEL Frame_Shift_Del 4 159559201 A - 5 88 BRCA TCGA-A8-A07G FGFR3 SNP Missense_Mutation 4 1808375 C T 18 57 BRCA TCGA-A8-A07G FRYL SNP Silent 4 48542836 T C 50 46 BRCA TCGA-A8-A07G KIT SNP Missense_Mutation 4 55565832 C T 25 64 BRCA TCGA-A8-A07G PCDHGB1 SNP Missense_Mutation 5 140730761 G T 48 45 BRCA TCGA-A8-A07G CAPSL SNP Nonsense_Mutation 5 35921198 G A 39 73 BRCA TCGA-A8-A07G TAB2 INS Frame_Shift_Ins 6 149699358 - T 32 59 BRCA TCGA-A8-A07G GRM8 SNP Silent 7 126173066 G A 35 69 BRCA TCGA-A8-A07G HNRNPA2B1 SNP Nonsense_Mutation 7 26233303 C A 21 98 BRCA TCGA-A8-A07G POM121L12 SNP Missense_Mutation 7 53103840 G A 38 40 BRCA TCGA-A8-A07G ENG SNP Nonsense_Mutation 9 130605384 C A 30 50 BRCA TCGA-A8-A07G DOCK8 SNP Missense_Mutation 9 289557 G C 40 79 BRCA TCGA-A8-A07I FLG SNP Missense_Mutation 1 152283655 C T 19 40 BRCA TCGA-A8-A07I KIRREL SNP Silent 1 158047872 C T 19 47 BRCA TCGA-A8-A07I NAV1 SNP Missense_Mutation 1 201687769 G T 38 75 BRCA TCGA-A8-A07I ADORA1 SNP Missense_Mutation 1 203098133 A T 12 91 BRCA TCGA-A8-A07I CR1 SNP Silent 1 207669639 G A 39 39 BRCA TCGA-A8-A07I TP53BP2 SNP Missense_Mutation 1 223991057 C G 32 70 BRCA TCGA-A8-A07I ARID1A SNP Missense_Mutation 1 27106136 C G 32 81 BRCA TCGA-A8-A07I ARHGAP12 SNP Missense_Mutation 10 32197496 C G 32 59 BRCA TCGA-A8-A07I ASAH2C SNP Silent 10 48033003 T C 56 60 BRCA TCGA-A8-A07I QSER1 SNP Silent 11 32954676 T C 53 49 BRCA TCGA-A8-A07I AHNAK SNP Missense_Mutation 11 62284301 G A 41 83 BRCA TCGA-A8-A07I SLC22A9 SNP Translation_Start_Site 11 63137348 C T 19 43 BRCA TCGA-A8-A07I PRKCDBP SNP Missense_Mutation 11 6341507 A T 7 71 BRCA TCGA-A8-A07I TRAFD1 SNP Missense_Mutation 12 112578753 T G 58 84 BRCA TCGA-A8-A07I UBC SNP Silent 12 125397811 C A 21 39 BRCA TCGA-A8-A07I RIMBP2 SNP Missense_Mutation 12 130935822 G T 35 69 BRCA TCGA-A8-A07I EP400 SNP Silent 12 132529374 C T 19 51 BRCA TCGA-A8-A07I GUCY2C SNP Missense_Mutation 12 14839103 G C 41 56 BRCA TCGA-A8-A07I DDX11 SNP Silent 12 31242073 T C 63 34 BRCA TCGA-A8-A07I BRCA2 SNP Missense_Mutation 13 32912555 G T 41 63 BRCA TCGA-A8-A07I SCEL SNP Missense_Mutation 13 78182240 A T 3 59 BRCA TCGA-A8-A07I SLC13A2 SNP Missense_Mutation 17 26818553 G A 40 62 BRCA TCGA-A8-A07I AATF SNP Missense_Mutation 17 35348082 C T 30 88 BRCA TCGA-A8-A07I AATF SNP Missense_Mutation 17 35348085 C G 29 45 BRCA TCGA-A8-A07I GGA3 SNP Silent 17 73239562 C T 32 55 BRCA TCGA-A8-A07I RECQL5 SNP Missense_Mutation 17 73654533 C T 27 80 BRCA TCGA-A8-A07I DCC SNP Missense_Mutation 18 50589678 C T 23 100 BRCA TCGA-A8-A07I TNFRSF11A SNP Missense_Mutation 18 60017101 G A 47 67 BRCA TCGA-A8-A07I PGLYRP2 SNP Missense_Mutation 19 15586523 G A 40 49 BRCA TCGA-A8-A07I SIRT2 SNP Silent 19 39369891 C T 23 16 BRCA TCGA-A8-A07I PNMAL1 SNP Missense_Mutation 19 46973388 G A 34 54 BRCA TCGA-A8-A07I MUC16 SNP Missense_Mutation 19 8997511 G T 45 44 BRCA TCGA-A8-A07I ZNF266 SNP Missense_Mutation 19 9524420 C T 27 47 BRCA TCGA-A8-A07I ZDBF2 SNP Missense_Mutation 2 207171377 G T 45 56 BRCA TCGA-A8-A07I KIDINS220 SNP Missense_Mutation 2 8871022 G A 35 95 BRCA TCGA-A8-A07I ARMCX1 DEL Frame_Shift_Del 23 100808553 CTGGA - 24 53 BRCA TCGA-A8-A07I ARMCX1 DEL Frame_Shift_Del 23 100808560 GAACAAATGA - 37 68 BRCA TCGA-A8-A07I TRPC5 SNP Missense_Mutation 23 111078326 C A 20 71 BRCA TCGA-A8-A07I XIAP SNP Silent 23 123019797 C A 28 46 BRCA TCGA-A8-A07I KLHL34 SNP Missense_Mutation 23 21675572 G T 36 59 BRCA TCGA-A8-A07I CXorf36 SNP Missense_Mutation 23 45013241 A G 4 83 BRCA TCGA-A8-A07I ITIH5L SNP Missense_Mutation 23 54780170 T G 63 54 BRCA TCGA-A8-A07I ITIH5L SNP Missense_Mutation 23 54780177 C A 17 70 BRCA TCGA-A8-A07I ZIC4 SNP Missense_Mutation 3 147108790 G A 37 77 BRCA TCGA-A8-A07I ANP32C SNP Missense_Mutation 4 165118440 C T 31 57 BRCA TCGA-A8-A07I PCDHB16 SNP Nonsense_Mutation 5 140562339 C T 21 57 BRCA TCGA-A8-A07I PCDHB16 SNP Missense_Mutation 5 140564292 G T 42 52 BRCA TCGA-A8-A07I TBC1D22B SNP Missense_Mutation 6 37254787 A G 6 89 BRCA TCGA-A8-A07I PIK3CG SNP Silent 7 106523500 C T 19 42 BRCA TCGA-A8-A07I AOAH SNP Silent 7 36661342 G A 38 37 BRCA TCGA-A8-A07I CDC14C SNP Silent 7 48965237 C T 31 50 BRCA TCGA-A8-A07I CDK14 SNP Silent 7 90377067 T C 53 57 BRCA TCGA-A8-A07I NEFM SNP Missense_Mutation 8 24774866 G A 37 95 BRCA TCGA-A8-A07I ALDH1B1 SNP Missense_Mutation 9 38395914 G T 44 54 BRCA TCGA-A8-A07J CRTC2 SNP Missense_Mutation 1 153927365 C T 27 84 BRCA TCGA-A8-A07J KIFAP3 SNP Missense_Mutation 1 170004659 C T 32 93 BRCA TCGA-A8-A07J PAPPA2 SNP Missense_Mutation 1 176758986 A G 11 75 BRCA TCGA-A8-A07J ARID1A DEL Frame_Shift_Del 1 27094455 TA - 53 91 BRCA TCGA-A8-A07J DHX32 DEL In_Frame_Del 10 127529507 CCA - 30 62 BRCA TCGA-A8-A07J ADAMTS15 SNP Silent 11 130343335 C T 27 48 BRCA TCGA-A8-A07J SSRP1 SNP Missense_Mutation 11 57099870 G T 33 84 BRCA TCGA-A8-A07J INTS5 SNP Missense_Mutation 11 62414499 C T 22 77 BRCA TCGA-A8-A07J ATG2A SNP Splice_site 11 64665833 A G 11 81 BRCA TCGA-A8-A07J GNB3 SNP Missense_Mutation 12 6952645 G A 40 80 BRCA TCGA-A8-A07J FLT3 SNP Nonsense_Mutation 13 28601358 C A 29 76 BRCA TCGA-A8-A07J FRY SNP Silent 13 32783135 C G 29 57 BRCA TCGA-A8-A07J PCDH9 SNP Missense_Mutation 13 67802470 G C 42 100 BRCA TCGA-A8-A07J ITGA11 SNP Missense_Mutation 15 68654007 G T 34 53 BRCA TCGA-A8-A07J HEATR3 SNP Splice_Site 16 50102690 G T 33 93 BRCA TCGA-A8-A07J CCR10 DEL Frame_Shift_Del 17 40832609 A - 8 15 BRCA TCGA-A8-A07J PRKACA SNP Missense_Mutation 19 14211675 C G 30 94 BRCA TCGA-A8-A07J SPTBN4 SNP Silent 19 41021284 C T 30 44 BRCA TCGA-A8-A07J LTBP4 SNP Missense_Mutation 19 41133107 G A 37 81 BRCA TCGA-A8-A07J MUC16 SNP Missense_Mutation 19 8993436 G T 34 48 BRCA TCGA-A8-A07J FARSB SNP Missense_Mutation 2 223520777 C T 19 64 BRCA TCGA-A8-A07J FITM2 SNP Missense_Mutation 20 42935409 G T 36 57 BRCA TCGA-A8-A07J UMODL1 SNP Silent 21 43505492 C T 30 49 BRCA TCGA-A8-A07J HCCS SNP Silent 23 11136711 G A 33 60 BRCA TCGA-A8-A07J SLC7A14 SNP Silent 3 170201117 G A 40 56 BRCA TCGA-A8-A07J PIK3CA DEL In_Frame_Del 3 178928067 CCTCATGGATTAGAAGATTTGCTGAAC - 18 98 BRCA TCGA-A8-A07J CADPS SNP Silent 3 62578366 C T 28 62 BRCA TCGA-A8-A07J PCDHGB3 SNP Missense_Mutation 5 140750139 G T 41 56 BRCA TCGA-A8-A07J MED23 SNP Missense_Mutation 6 131911508 G A 47 100 BRCA TCGA-A8-A07J FTSJD2 SNP Silent 6 37427448 G A 45 54 BRCA TCGA-A8-A07J TMEM71 SNP Missense_Mutation 8 133764157 C T 31 76 BRCA TCGA-A8-A07J DOCK8 SNP Silent 9 377063 C T 29 69 BRCA TCGA-A8-A07L SETDB1 SNP Missense_Mutation 1 150921875 A C 3 84 BRCA TCGA-A8-A07L CASQ1 SNP Silent 1 160165315 C T 31 51 BRCA TCGA-A8-A07L PPOX SNP Missense_Mutation 1 161140232 C T 30 58 BRCA TCGA-A8-A07L GPR161 SNP Missense_Mutation 1 168073818 T C 55 53 BRCA TCGA-A8-A07L F5 SNP Missense_Mutation 1 169484814 C A 32 57 BRCA TCGA-A8-A07L SELP SNP Missense_Mutation 1 169578747 C G 17 89 BRCA TCGA-A8-A07L ASTN1 SNP Missense_Mutation 1 176863946 A T 10 88 BRCA TCGA-A8-A07L ASTN1 SNP Silent 1 176918359 C A 23 43 BRCA TCGA-A8-A07L DENND1B SNP Missense_Mutation 1 197564409 C T 20 86 BRCA TCGA-A8-A07L CR2 SNP Missense_Mutation 1 207640226 G C 43 74 BRCA TCGA-A8-A07L CSMD2 SNP Missense_Mutation 1 34190272 G T 47 100 BRCA TCGA-A8-A07L ZSWIM5 SNP Missense_Mutation 1 45516799 T A 51 68 BRCA TCGA-A8-A07L DNAJB4 SNP Missense_Mutation 1 78478898 G A 47 96 BRCA TCGA-A8-A07L MCOLN3 SNP Missense_Mutation 1 85506801 T C 53 50 BRCA TCGA-A8-A07L NPM3 SNP Silent 10 103542241 T C 60 45 BRCA TCGA-A8-A07L PSD SNP Missense_Mutation 10 104165135 C T 31 92 BRCA TCGA-A8-A07L SORCS3 SNP Splice_site 10 107015559 G A 35 99 BRCA TCGA-A8-A07L CUZD1 SNP Translation_Start_Site 10 124605460 C T 19 38 BRCA TCGA-A8-A07L BMS1 SNP Missense_Mutation 10 43288536 G T 48 61 BRCA TCGA-A8-A07L CAMK2G SNP Silent 10 75612979 T C 56 73 BRCA TCGA-A8-A07L FAM22B SNP Missense_Mutation 10 81471609 A G 8 40 BRCA TCGA-A8-A07L DYNC2H1 SNP Nonsense_Mutation 11 103106512 G T 41 98 BRCA TCGA-A8-A07L FAT3 SNP Missense_Mutation 11 92531007 A C 6 80 BRCA TCGA-A8-A07L GCN1L1 SNP Missense_Mutation 12 120591040 C A 25 100 BRCA TCGA-A8-A07L C12orf68 SNP Nonsense_Mutation 12 48578200 C T 21 75 BRCA TCGA-A8-A07L ESYT1 SNP Silent 12 56531336 T C 60 52 BRCA TCGA-A8-A07L POC1B SNP Silent 12 89818992 G T 37 33 BRCA TCGA-A8-A07L DHRS2 SNP Missense_Mutation 14 24108411 G A 40 70 BRCA TCGA-A8-A07L MTHFD1 SNP Missense_Mutation 14 64898551 T A 62 93 BRCA TCGA-A8-A07L KCNK10 SNP Silent 14 88729861 G C 47 72 BRCA TCGA-A8-A07L MOAP1 SNP Splice_site 14 93650587 T A 51 52 BRCA TCGA-A8-A07L MAPKBP1 SNP Missense_Mutation 15 42113816 C G 24 69 BRCA TCGA-A8-A07L MAPKBP1 SNP Missense_Mutation 15 42113838 C G 30 57 BRCA TCGA-A8-A07L TGM5 SNP Silent 15 43525859 C T 28 74 BRCA TCGA-A8-A07L ARIH1 SNP Silent 15 72855839 T C 64 52 BRCA TCGA-A8-A07L ACSBG1 SNP Splice_Site 15 78485847 C A 18 67 BRCA TCGA-A8-A07L BTBD1 SNP Missense_Mutation 15 83687554 T G 53 91 BRCA TCGA-A8-A07L ADCY9 SNP Missense_Mutation 16 4163947 G C 41 55 BRCA TCGA-A8-A07L SALL1 SNP Missense_Mutation 16 51175777 A T 3 52 BRCA TCGA-A8-A07L HYDIN SNP Silent 16 70942229 G A 41 53 BRCA TCGA-A8-A07L SLC16A6 SNP Silent 17 66267701 G C 45 28 BRCA TCGA-A8-A07L ABCA6 SNP Missense_Mutation 17 67077227 G A 44 89 BRCA TCGA-A8-A07L DSC2 SNP Missense_Mutation 18 28660146 C T 27 49 BRCA TCGA-A8-A07L OR4F17 SNP Missense_Mutation 19 110808 T A 50 47 BRCA TCGA-A8-A07L PRX SNP Missense_Mutation 19 40901629 C T 26 55 BRCA TCGA-A8-A07L SERTAD3 SNP Missense_Mutation 19 40947861 G A 38 59 BRCA TCGA-A8-A07L ANKRD24 SNP Missense_Mutation 19 4217066 G A 42 59 BRCA TCGA-A8-A07L ZFP112 SNP Missense_Mutation 19 44831696 T C 51 50 BRCA TCGA-A8-A07L PVRL2 SNP Missense_Mutation 19 45389459 G A 38 46 BRCA TCGA-A8-A07L KIR2DL4 DNP Missense_Mutation 19 55325383 TC AA 54 50 BRCA TCGA-A8-A07L TGFBRAP1 SNP Missense_Mutation 2 105883873 G T 44 62 BRCA TCGA-A8-A07L FSIP2 SNP Nonsense_Mutation 2 186670216 C T 29 64 BRCA TCGA-A8-A07L STAT4 SNP Silent 2 192012876 C T 21 47 BRCA TCGA-A8-A07L CCDC150 SNP Missense_Mutation 2 197521456 T G 64 54 BRCA TCGA-A8-A07L FN1 SNP Silent 2 216271007 C A 29 52 BRCA TCGA-A8-A07L MXD1 SNP Missense_Mutation 2 70165321 A C 7 90 BRCA TCGA-A8-A07L NFATC2 SNP Missense_Mutation 20 50092025 G T 43 100 BRCA TCGA-A8-A07L L1CAM SNP Silent 23 153128304 G A 40 43 BRCA TCGA-A8-A07L TAB3 DEL Frame_Shift_Del 23 30872538 G - 33 87 BRCA TCGA-A8-A07L TAB3 DEL Frame_Shift_Del 23 30872540 TATCCCTCTT - 49 48 BRCA TCGA-A8-A07L TAB3 SNP Nonsense_Mutation 23 30873405 G T 45 94 BRCA TCGA-A8-A07L SHROOM4 SNP Missense_Mutation 23 50381258 A G 7 60 BRCA TCGA-A8-A07L MED12 SNP Missense_Mutation 23 70339989 G T 35 78 BRCA TCGA-A8-A07L ATRX SNP Missense_Mutation 23 76849193 C G 31 95 BRCA TCGA-A8-A07L SLITRK3 SNP Missense_Mutation 3 164906133 G A 44 95 BRCA TCGA-A8-A07L GOLGA4 SNP Missense_Mutation 3 37367243 A G 4 49 BRCA TCGA-A8-A07L INTS12 SNP Missense_Mutation 4 106613283 C T 21 22 BRCA TCGA-A8-A07L GSTCD DEL Frame_Shift_Del 4 106746874 AAGAGAAGTGATGAACTGGGTTT - 9 64 BRCA TCGA-A8-A07L KIAA1109 SNP Silent 4 123151230 C A 19 69 BRCA TCGA-A8-A07L BOD1L1 SNP Silent 4 13603397 G T 34 41 BRCA TCGA-A8-A07L NR3C2 SNP Missense_Mutation 4 149356793 C G 28 96 BRCA TCGA-A8-A07L CD38 SNP Missense_Mutation 4 15818253 C A 24 60 BRCA TCGA-A8-A07L STK10 SNP Missense_Mutation 5 171488230 C G 26 68 BRCA TCGA-A8-A07L VCAN SNP Missense_Mutation 5 82832924 A C 4 47 BRCA TCGA-A8-A07L TAAR5 SNP Missense_Mutation 6 132910035 C T 25 71 BRCA TCGA-A8-A07L ULBP1 SNP Missense_Mutation 6 150290226 C T 24 50 BRCA TCGA-A8-A07L ARID1B SNP Missense_Mutation 6 157527623 A C 3 75 BRCA TCGA-A8-A07L HIST1H2AI SNP Nonsense_Mutation 6 27776369 A T 9 87 BRCA TCGA-A8-A07L HLA-G SNP Missense_Mutation 6 29797223 C A 18 61 BRCA TCGA-A8-A07L CUL7 SNP Missense_Mutation 6 43012613 C T 25 77 BRCA TCGA-A8-A07L GPR116 SNP Missense_Mutation 6 46828615 G A 43 70 BRCA TCGA-A8-A07L RELN SNP Splice_site 7 103185571 C T 24 98 BRCA TCGA-A8-A07L FAM180A SNP Missense_Mutation 7 135433316 T A 50 51 BRCA TCGA-A8-A07L MGAM SNP Missense_Mutation 7 141708438 C T 32 61 BRCA TCGA-A8-A07L EPHB6 SNP Missense_Mutation 7 142562162 G T 47 100 BRCA TCGA-A8-A07L RNF19A SNP Silent 8 101271468 G A 46 51 BRCA TCGA-A8-A07L FAM167A SNP Missense_Mutation 8 11301766 C A 24 51 BRCA TCGA-A8-A07L CSMD3 SNP Missense_Mutation 8 113585739 C G 17 83 BRCA TCGA-A8-A07L ZNF572 SNP Missense_Mutation 8 125989263 A T 3 62 BRCA TCGA-A8-A07L TRAPPC9 SNP Missense_Mutation 8 141461333 C T 23 76 BRCA TCGA-A8-A07L AP3M2 SNP Missense_Mutation 8 42012278 A G 7 75 BRCA TCGA-A8-A07L HGSNAT SNP Missense_Mutation 8 43054635 C A 29 92 BRCA TCGA-A8-A07L PSKH2 SNP Silent 8 87076599 G C 45 58 BRCA TCGA-A8-A07L KIAA1958 SNP Missense_Mutation 9 115337155 C A 18 59 BRCA TCGA-A8-A07L DFNB31 SNP Missense_Mutation 9 117188598 G C 41 65 BRCA TCGA-A8-A07L C5 SNP Missense_Mutation 9 123759853 T C 62 75 BRCA TCGA-A8-A07L ABL1 DEL Frame_Shift_Del 9 133759842 TTCCC - 60 78 BRCA TCGA-A8-A07L PGM5 SNP Missense_Mutation 9 71007317 G A 46 80 BRCA TCGA-A8-A07O MTMR11 SNP Missense_Mutation 1 149908094 G A 43 51 BRCA TCGA-A8-A07O AQP10 SNP Missense_Mutation 1 154293636 T C 58 46 BRCA TCGA-A8-A07O C1orf85 SNP Missense_Mutation 1 156263157 C T 23 83 BRCA TCGA-A8-A07O ANKRD13C SNP Missense_Mutation 1 70758132 C T 31 100 BRCA TCGA-A8-A07O ATM SNP Missense_Mutation 11 108129723 A C 4 52 BRCA TCGA-A8-A07O SCN3B SNP Missense_Mutation 11 123513189 G A 40 65 BRCA TCGA-A8-A07O MUC5B SNP Missense_Mutation 11 1264973 C T 22 52 BRCA TCGA-A8-A07O TCHP SNP Silent 12 110346447 G A 33 51 BRCA TCGA-A8-A07O LRP6 SNP Missense_Mutation 12 12311946 G T 45 100 BRCA TCGA-A8-A07O GOLGA3 SNP Missense_Mutation 12 133351858 C G 32 86 BRCA TCGA-A8-A07O SP1 SNP Silent 12 53776064 T C 56 58 BRCA TCGA-A8-A07O CHD4 SNP Silent 12 6702335 G A 48 57 BRCA TCGA-A8-A07O NBEA DEL In_Frame_Del 13 35733461 AGT - 3 52 BRCA TCGA-A8-A07O CASC5 SNP Missense_Mutation 15 40921499 G C 35 55 BRCA TCGA-A8-A07O PARP6 SNP Missense_Mutation 15 72559136 C T 29 83 BRCA TCGA-A8-A07O C16orf79 SNP Missense_Mutation 16 2259629 C A 30 75 BRCA TCGA-A8-A07O ATXN2L SNP Missense_Mutation 16 28842080 C T 26 54 BRCA TCGA-A8-A07O MLYCD DEL Splice_Site 16 83948559 AG - 7 85 BRCA TCGA-A8-A07O TP53 SNP Splice_Site 17 7579311 C T 18 89 BRCA TCGA-A8-A07O LAMA1 SNP Missense_Mutation 18 7015822 G A 43 59 BRCA TCGA-A8-A07O C19orf80 DEL Frame_Shift_Del 19 11350320 GTGCCTGCTCT - 36 48 BRCA TCGA-A8-A07O SPHK2 SNP Missense_Mutation 19 49131440 C T 31 67 BRCA TCGA-A8-A07O MUC16 SNP Missense_Mutation 19 9063731 C T 29 50 BRCA TCGA-A8-A07O MUC16 SNP Missense_Mutation 19 9065839 A C 11 50 BRCA TCGA-A8-A07O MARCH7 SNP Missense_Mutation 2 160605150 C T 25 63 BRCA TCGA-A8-A07O TMEM131 DEL In_Frame_Del 2 98475800 TGT - 51 68 BRCA TCGA-A8-A07O DLGAP4 SNP Missense_Mutation 20 35060254 G A 38 72 BRCA TCGA-A8-A07O SALL4 SNP Silent 20 50400810 G A 45 53 BRCA TCGA-A8-A07O PCMTD2 SNP Silent 20 62891426 C T 31 43 BRCA TCGA-A8-A07O PANX2 SNP Silent 22 50616080 C T 29 64 BRCA TCGA-A8-A07O SCO2 SNP Silent 22 50962301 G A 40 49 BRCA TCGA-A8-A07O CASR SNP Silent 3 121980842 C T 31 50 BRCA TCGA-A8-A07O HSPBAP1 SNP Missense_Mutation 3 122459670 G A 33 54 BRCA TCGA-A8-A07O ACAD11 SNP Missense_Mutation 3 132378462 G T 44 52 BRCA TCGA-A8-A07O PPM1L SNP Missense_Mutation 3 160474474 C G 32 53 BRCA TCGA-A8-A07O UQCRC1 SNP Missense_Mutation 3 48641015 C G 18 100 BRCA TCGA-A8-A07O C3orf62 SNP Silent 3 49311552 C T 29 57 BRCA TCGA-A8-A07O NUDT6 SNP Missense_Mutation 4 123814333 C T 32 97 BRCA TCGA-A8-A07O FGFR4 SNP Silent 5 176522628 C T 19 42 BRCA TCGA-A8-A07O LAMA4 SNP Missense_Mutation 6 112512915 C T 27 65 BRCA TCGA-A8-A07O ATXN1 SNP Missense_Mutation 6 16328465 G C 41 82 BRCA TCGA-A8-A07O ABHD16A SNP Missense_Mutation 6 31655488 C T 32 93 BRCA TCGA-A8-A07O LRRC4 SNP Missense_Mutation 7 127670579 C T 27 90 BRCA TCGA-A8-A07O DNAH11 SNP Missense_Mutation 7 21805205 G A 45 83 BRCA TCGA-A8-A07O CYP11B2 SNP Missense_Mutation 8 143994076 T A 49 65 BRCA TCGA-A8-A07O SH2D4A SNP Missense_Mutation 8 19231145 C T 29 79 BRCA TCGA-A8-A07O ST18 SNP Silent 8 53079446 C T 23 39 BRCA TCGA-A8-A07O PREX2 SNP Missense_Mutation 8 68965476 G A 39 100 BRCA TCGA-A8-A07O PCSK5 SNP Missense_Mutation 9 78772039 G A 39 65 BRCA TCGA-A8-A07P PSMD4 SNP Splice_Site 1 151238994 A G 7 86 BRCA TCGA-A8-A07P KPRP SNP Missense_Mutation 1 152733785 C A 25 47 BRCA TCGA-A8-A07P CELA2A SNP Silent 1 15793991 C T 23 45 BRCA TCGA-A8-A07P ITPKB SNP Splice_site 1 226825450 A G 12 64 BRCA TCGA-A8-A07P DMBX1 SNP Silent 1 46976927 G T 47 55 BRCA TCGA-A8-A07P ATM DEL Frame_Shift_Del 11 108164150 GC - 46 54 BRCA TCGA-A8-A07P ATM SNP Missense_Mutation 11 108164152 G T 40 80 BRCA TCGA-A8-A07P MLL SNP Nonsense_Mutation 11 118350902 C T 29 98 BRCA TCGA-A8-A07P OR51G2 SNP Missense_Mutation 11 4936757 C T 26 68 BRCA TCGA-A8-A07P P2RX3 SNP Missense_Mutation 11 57114069 G C 36 57 BRCA TCGA-A8-A07P DTX1 SNP Missense_Mutation 12 113532684 C T 23 66 BRCA TCGA-A8-A07P WDR66 SNP Silent 12 122437780 C T 31 28 BRCA TCGA-A8-A07P SLC15A4 SNP Missense_Mutation 12 129285502 C A 32 79 BRCA TCGA-A8-A07P MRPS35 SNP Nonsense_Mutation 12 27890496 C T 19 50 BRCA TCGA-A8-A07P AQP6 SNP Silent 12 50368232 T A 63 47 BRCA TCGA-A8-A07P GLI1 SNP Silent 12 57859576 C T 22 51 BRCA TCGA-A8-A07P C13orf33 SNP Missense_Mutation 13 31495228 A G 8 74 BRCA TCGA-A8-A07P C14orf159 SNP Splice_Site 14 91639748 G A 44 54 BRCA TCGA-A8-A07P ATP10A SNP Missense_Mutation 15 25925049 C A 20 55 BRCA TCGA-A8-A07P RYR3 SNP Missense_Mutation 15 34131109 G T 41 65 BRCA TCGA-A8-A07P IL16 SNP Silent 15 81517749 G A 38 37 BRCA TCGA-A8-A07P PAFAH1B1 SNP Missense_Mutation 17 2575983 G T 46 98 BRCA TCGA-A8-A07P C17orf102 SNP Missense_Mutation 17 32905986 C T 19 50 BRCA TCGA-A8-A07P NR1D1 SNP Missense_Mutation 17 38251892 A T 16 51 BRCA TCGA-A8-A07P L3MBTL4 INS Frame_Shift_Ins 18 6080916 - T 24 76 BRCA TCGA-A8-A07P SERPINB7 SNP Missense_Mutation 18 61471507 T A 51 76 BRCA TCGA-A8-A07P ATG4D SNP Missense_Mutation 19 10663675 C T 23 68 BRCA TCGA-A8-A07P SIGLEC9 SNP Missense_Mutation 19 51629052 A G 8 62 BRCA TCGA-A8-A07P AFF3 SNP Missense_Mutation 2 100623894 C T 23 98 BRCA TCGA-A8-A07P SLC20A1 SNP Silent 2 113405016 C T 29 62 BRCA TCGA-A8-A07P LY75-CD302 DEL In_Frame_Del 2 160628389 TTC - 64 63 BRCA TCGA-A8-A07P HADHA SNP Silent 2 26417472 C T 27 43 BRCA TCGA-A8-A07P CMPK2 SNP Nonsense_Mutation 2 6990088 G A 47 53 BRCA TCGA-A8-A07P CTNNA2 SNP Missense_Mutation 2 80136769 C T 23 100 BRCA TCGA-A8-A07P FABP1 SNP Missense_Mutation 2 88425708 C T 22 92 BRCA TCGA-A8-A07P NRIP1 SNP Missense_Mutation 21 16338239 G A 42 83 BRCA TCGA-A8-A07P ODZ1 SNP Missense_Mutation 23 123680767 C T 30 94 BRCA TCGA-A8-A07P PPEF1 SNP Nonsense_Mutation 23 18768068 C T 17 55 BRCA TCGA-A8-A07P C3orf24 SNP Missense_Mutation 3 10146188 G A 42 82 BRCA TCGA-A8-A07P TP63 SNP Silent 3 189582203 C T 19 41 BRCA TCGA-A8-A07P STOX2 SNP Silent 4 184932355 G T 33 45 BRCA TCGA-A8-A07P STIM2 SNP Silent 4 27009202 C T 25 55 BRCA TCGA-A8-A07P ATP8A1 SNP Missense_Mutation 4 42416696 C A 32 82 BRCA TCGA-A8-A07P GRM6 SNP Silent 5 178408823 G T 35 62 BRCA TCGA-A8-A07P ADTRP SNP Splice_Site 6 11768480 A G 14 82 BRCA TCGA-A8-A07P KCNK5 SNP Missense_Mutation 6 39158914 C T 27 73 BRCA TCGA-A8-A07P TREML2 SNP Silent 6 41162312 G A 39 44 BRCA TCGA-A8-A07P CHRM2 SNP Missense_Mutation 7 136699781 G A 40 100 BRCA TCGA-A8-A07P RAD21 DEL Frame_Shift_Del 8 117875465 AG - 3 71 BRCA TCGA-A8-A07P PSMD5 SNP Nonsense_Mutation 9 123593626 G A 37 72 BRCA TCGA-A8-A07P SETX SNP Missense_Mutation 9 135211712 T C 50 83 BRCA TCGA-A8-A07P CACFD1 SNP Missense_Mutation 9 136333148 A T 1 45 BRCA TCGA-A8-A07P KDM4C SNP Missense_Mutation 9 6814672 G A 38 100 BRCA TCGA-A8-A07P LOC100287354 SNP Missense_Mutation 9 68455095 G C 43 48 BRCA TCGA-A8-A07R OVGP1 SNP Missense_Mutation 1 111963924 G C 46 70 BRCA TCGA-A8-A07R SLC22A15 SNP Silent 1 116574176 A T 10 48 BRCA TCGA-A8-A07R MAD2L2 INS In_Frame_Ins 1 11740518 - ATT 8 48 BRCA TCGA-A8-A07R KIAA2013 SNP Silent 1 11982630 C T 30 66 BRCA TCGA-A8-A07R POLR3GL SNP Splice_site 1 145457935 C G 21 89 BRCA TCGA-A8-A07R RPRD2 SNP Silent 1 150443698 C T 26 65 BRCA TCGA-A8-A07R PRUNE SNP Silent 1 150999788 A C 16 47 BRCA TCGA-A8-A07R LCE1C SNP Missense_Mutation 1 152777833 G A 33 68 BRCA TCGA-A8-A07R ADAR SNP Missense_Mutation 1 154574808 G A 34 50 BRCA TCGA-A8-A07R NTRK1 SNP Missense_Mutation 1 156843468 C G 20 58 BRCA TCGA-A8-A07R FHAD1 SNP Missense_Mutation 1 15707257 G T 41 65 BRCA TCGA-A8-A07R SLAMF9 SNP Missense_Mutation 1 159923329 A G 12 56 BRCA TCGA-A8-A07R NHLH1 SNP Missense_Mutation 1 160340790 C T 26 72 BRCA TCGA-A8-A07R SPEN SNP Splice_site 1 16247478 G T 35 99 BRCA TCGA-A8-A07R FAM5B SNP Silent 1 177245552 C A 23 49 BRCA TCGA-A8-A07R CHI3L1 SNP Silent 1 203149664 G A 43 50 BRCA TCGA-A8-A07R C4BPB SNP Missense_Mutation 1 207265113 C G 26 58 BRCA TCGA-A8-A07R USH2A SNP Silent 1 216138717 G C 42 52 BRCA TCGA-A8-A07R HSPG2 DEL Frame_Shift_Del 1 22155911 C - 26 67 BRCA TCGA-A8-A07R CAPN8 SNP Splice_site 1 223717545 C A 18 92 BRCA TCGA-A8-A07R WDR26 SNP Silent 1 224612368 G A 33 82 BRCA TCGA-A8-A07R LBR SNP Missense_Mutation 1 225599115 C T 26 100 BRCA TCGA-A8-A07R OR2T12 SNP Silent 1 248458059 G A 35 29 BRCA TCGA-A8-A07R RHD SNP Missense_Mutation 1 25599163 A T 3 52 BRCA TCGA-A8-A07R RHCE SNP Missense_Mutation 1 25747153 T A 56 48 BRCA TCGA-A8-A07R ARID1A SNP Missense_Mutation 1 27089688 G T 35 98 BRCA TCGA-A8-A07R AK2 SNP Missense_Mutation 1 33490155 G C 34 97 BRCA TCGA-A8-A07R C1orf174 SNP Missense_Mutation 1 3807144 C G 29 81 BRCA TCGA-A8-A07R KIAA0754 SNP Missense_Mutation 1 39878587 C G 24 59 BRCA TCGA-A8-A07R DAB1 SNP Missense_Mutation 1 57480646 C A 18 61 BRCA TCGA-A8-A07R MCOLN2 SNP Splice_site 1 85405236 C T 24 83 BRCA TCGA-A8-A07R ENTPD7 SNP Missense_Mutation 10 101455752 G C 43 83 BRCA TCGA-A8-A07R NRP1 SNP Nonsense_Mutation 10 33475378 G A 45 84 BRCA TCGA-A8-A07R C10orf25 DEL Frame_Shift_Del 10 45495833 ACTGAGC - 10 49 BRCA TCGA-A8-A07R AKR1C4 SNP Missense_Mutation 10 5248263 G C 41 83 BRCA TCGA-A8-A07R FAM208B SNP Missense_Mutation 10 5791187 A C 5 59 BRCA TCGA-A8-A07R HKDC1 SNP Missense_Mutation 10 71003105 A C 5 78 BRCA TCGA-A8-A07R CAMK2G SNP Missense_Mutation 10 75620617 A G 16 88 BRCA TCGA-A8-A07R ITIH2 SNP Silent 10 7769757 G C 45 66 BRCA TCGA-A8-A07R OPN4 SNP Missense_Mutation 10 88422113 T C 55 70 BRCA TCGA-A8-A07R SLC16A12 SNP Silent 10 91195821 G A 37 44 BRCA TCGA-A8-A07R MCAM SNP Missense_Mutation 11 119183561 G C 47 70 BRCA TCGA-A8-A07R RCN1 SNP Missense_Mutation 11 32122121 G A 39 72 BRCA TCGA-A8-A07R OR52K2 SNP Missense_Mutation 11 4471322 A T 15 48 BRCA TCGA-A8-A07R OR4C13 SNP Missense_Mutation 11 49974137 T A 50 54 BRCA TCGA-A8-A07R OR5T1 SNP Missense_Mutation 11 56043743 T C 53 58 BRCA TCGA-A8-A07R OR56A1 SNP Silent 11 6048683 G A 45 59 BRCA TCGA-A8-A07R TMEM223 INS Frame_Shift_Ins 11 62559273 - C 46 56 BRCA TCGA-A8-A07R SLC3A2 SNP Missense_Mutation 11 62656079 C G 23 58 BRCA TCGA-A8-A07R SPTBN2 SNP Missense_Mutation 11 66455691 G T 35 83 BRCA TCGA-A8-A07R INPPL1 SNP Silent 11 71939469 C T 26 54 BRCA TCGA-A8-A07R C2CD3 SNP Missense_Mutation 11 73829409 T G 55 81 BRCA TCGA-A8-A07R ODZ4 SNP Missense_Mutation 11 78380642 C A 29 100 BRCA TCGA-A8-A07R DENND5A SNP Nonsense_Mutation 11 9225258 G A 45 100 BRCA TCGA-A8-A07R TMEM41B SNP Splice_Site 11 9316935 C G 32 100 BRCA TCGA-A8-A07R CRY1 SNP Missense_Mutation 12 107391414 C A 30 100 BRCA TCGA-A8-A07R HECTD4 SNP Missense_Mutation 12 112677797 G C 46 100 BRCA TCGA-A8-A07R NOS1 SNP Missense_Mutation 12 117681129 C G 17 68 BRCA TCGA-A8-A07R LRP6 SNP Silent 12 12334290 G A 33 60 BRCA TCGA-A8-A07R TCTN2 SNP Silent 12 124189164 C T 30 63 BRCA TCGA-A8-A07R DNAH10 SNP Missense_Mutation 12 124320025 C T 20 62 BRCA TCGA-A8-A07R IRAK4 SNP Missense_Mutation 12 44176156 T G 56 90 BRCA TCGA-A8-A07R MSRB3 SNP Missense_Mutation 12 65720647 C A 21 73 BRCA TCGA-A8-A07R CHD4 SNP Nonsense_Mutation 12 6707089 C T 30 95 BRCA TCGA-A8-A07R LIG4 SNP Missense_Mutation 13 108861606 C T 32 71 BRCA TCGA-A8-A07R LIG4 SNP Nonsense_Mutation 13 108862659 T A 63 50 BRCA TCGA-A8-A07R MYO16 SNP Missense_Mutation 13 109617177 C A 24 47 BRCA TCGA-A8-A07R SKA3 SNP Missense_Mutation 13 21729839 C G 32 64 BRCA TCGA-A8-A07R EBPL DEL Frame_Shift_Del 13 50237261 CAGAATTTCCA - 29 52 BRCA TCGA-A8-A07R MYH6 SNP Missense_Mutation 14 23857373 G C 36 63 BRCA TCGA-A8-A07R RIPK3 SNP Silent 14 24808794 A T 6 40 BRCA TCGA-A8-A07R PSMA6 SNP Splice_site 14 35778201 G T 35 100 BRCA TCGA-A8-A07R SYNE2 SNP Missense_Mutation 14 64600895 G C 36 51 BRCA TCGA-A8-A07R RYR3 SNP Missense_Mutation 15 33990151 C T 19 98 BRCA TCGA-A8-A07R MAP1A DEL Frame_Shift_Del 15 43819341 GCAGGAGGGG - 46 57 BRCA TCGA-A8-A07R MYO5C SNP Missense_Mutation 15 52497266 C T 28 98 BRCA TCGA-A8-A07R ALDH1A2 SNP Missense_Mutation 15 58357803 G T 43 67 BRCA TCGA-A8-A07R IQCH SNP Missense_Mutation 15 67555536 C T 20 65 BRCA TCGA-A8-A07R PAQR5 SNP Missense_Mutation 15 69652466 C G 22 74 BRCA TCGA-A8-A07R LRRC28 SNP Missense_Mutation 15 99874329 C G 21 96 BRCA TCGA-A8-A07R ACSM1 SNP Missense_Mutation 16 20648499 G C 35 33 BRCA TCGA-A8-A07R ABCA3 SNP Missense_Mutation 16 2347904 G C 45 54 BRCA TCGA-A8-A07R KDM8 SNP Missense_Mutation 16 27232004 G A 40 75 BRCA TCGA-A8-A07R ASPHD1 SNP Silent 16 29913171 C T 23 36 BRCA TCGA-A8-A07R ZNF646 SNP Missense_Mutation 16 31089275 G A 42 51 BRCA TCGA-A8-A07R MEFV SNP Missense_Mutation 16 3293337 C T 19 58 BRCA TCGA-A8-A07R MGRN1 SNP Missense_Mutation 16 4723519 C G 27 49 BRCA TCGA-A8-A07R ROGDI SNP Missense_Mutation 16 4848160 G T 41 65 BRCA TCGA-A8-A07R ZNF423 SNP Missense_Mutation 16 49764856 C G 31 78 BRCA TCGA-A8-A07R SNX20 SNP Missense_Mutation 16 50707855 A G 6 87 BRCA TCGA-A8-A07R NLRC5 DEL In_Frame_Del 16 57115479 CTGGCTGAAGGA - 24 62 BRCA TCGA-A8-A07R MMP15 SNP Silent 16 58077431 C T 19 40 BRCA TCGA-A8-A07R DYNC1LI2 SNP Missense_Mutation 16 66766325 C G 17 69 BRCA TCGA-A8-A07R TMED6 SNP Nonsense_Mutation 16 69381693 C A 29 57 BRCA TCGA-A8-A07R SGSM2 SNP Missense_Mutation 17 2265536 G C 44 64 BRCA TCGA-A8-A07R JUP SNP Missense_Mutation 17 39777038 G T 46 65 BRCA TCGA-A8-A07R NAGLU SNP Missense_Mutation 17 40695472 A G 16 86 BRCA TCGA-A8-A07R CNTNAP1 SNP Missense_Mutation 17 40840959 G A 41 81 BRCA TCGA-A8-A07R GPATCH8 SNP Missense_Mutation 17 42475662 C G 28 44 BRCA TCGA-A8-A07R PLCD3 SNP Missense_Mutation 17 43190567 T A 58 90 BRCA TCGA-A8-A07R MRC2 SNP Missense_Mutation 17 60749168 C G 28 75 BRCA TCGA-A8-A07R STRADA SNP Missense_Mutation 17 61787935 C T 26 98 BRCA TCGA-A8-A07R GPS2 DEL Frame_Shift_Del 17 7216985 TGTCCATGCTCTGGTGTCCC - 63 69 BRCA TCGA-A8-A07R TP53 SNP Missense_Mutation 17 7577539 G A 39 60 BRCA TCGA-A8-A07R CARD14 SNP Missense_Mutation 17 78157893 C G 17 53 BRCA TCGA-A8-A07R CTC1 SNP Missense_Mutation 17 8141744 T C 49 54 BRCA TCGA-A8-A07R EPB41L3 SNP Silent 18 5434036 G T 35 52 BRCA TCGA-A8-A07R VPS4B SNP Missense_Mutation 18 61071015 C G 25 100 BRCA TCGA-A8-A07R CYP4F11 SNP Silent 19 16025600 C G 25 48 BRCA TCGA-A8-A07R MAST3 SNP Silent 19 18254639 C T 21 50 BRCA TCGA-A8-A07R HOMER3 DEL Frame_Shift_Del 19 19042357 C - 27 41 BRCA TCGA-A8-A07R ZNF90 SNP Missense_Mutation 19 20229739 G C 42 66 BRCA TCGA-A8-A07R MAG SNP Missense_Mutation 19 35802828 G A 40 59 BRCA TCGA-A8-A07R GPR42 SNP Silent 19 35862267 T C 49 51 BRCA TCGA-A8-A07R ZNF233 SNP Nonsense_Mutation 19 44771096 C T 21 50 BRCA TCGA-A8-A07R STRN4 SNP Missense_Mutation 19 47231375 G A 34 60 BRCA TCGA-A8-A07R AP2A1 SNP Missense_Mutation 19 50295317 A G 6 88 BRCA TCGA-A8-A07R ACPT SNP Missense_Mutation 19 51297015 G C 47 58 BRCA TCGA-A8-A07R PRKCG SNP Missense_Mutation 19 54401697 A C 12 72 BRCA TCGA-A8-A07R NLRP2 SNP Missense_Mutation 19 55493680 T C 62 64 BRCA TCGA-A8-A07R ZNF544 SNP Missense_Mutation 19 58773426 C T 19 50 BRCA TCGA-A8-A07R INSR SNP Silent 19 7122974 C T 24 51 BRCA TCGA-A8-A07R GALNT5 SNP Missense_Mutation 2 158114775 C T 26 59 BRCA TCGA-A8-A07R METTL8 SNP Missense_Mutation 2 172195922 T A 54 56 BRCA TCGA-A8-A07R UGT1A8 SNP Silent 2 234526443 A C 15 49 BRCA TCGA-A8-A07R COL6A3 SNP Missense_Mutation 2 238253387 A G 10 91 BRCA TCGA-A8-A07R FAM179A SNP Missense_Mutation 2 29259480 C T 26 63 BRCA TCGA-A8-A07R LTBP1 SNP Missense_Mutation 2 33518252 C G 19 41 BRCA TCGA-A8-A07R ALMS1 SNP Silent 2 73677062 A C 6 40 BRCA TCGA-A8-A07R SOGA1 SNP Silent 20 35445813 C A 25 46 BRCA TCGA-A8-A07R ARHGAP40 SNP Missense_Mutation 20 37267951 T A 64 54 BRCA TCGA-A8-A07R PLCB1 SNP Missense_Mutation 20 8719944 G A 36 98 BRCA TCGA-A8-A07R PKNOX1 SNP Missense_Mutation 21 44438269 G A 44 76 BRCA TCGA-A8-A07R SREBF2 SNP Missense_Mutation 22 42273963 G C 45 68 BRCA TCGA-A8-A07R PDZD4 SNP Missense_Mutation 23 153070217 C T 31 80 BRCA TCGA-A8-A07R SLC10A3 DEL Frame_Shift_Del 23 153716489 G - 37 80 BRCA TCGA-A8-A07R SLC10A3 DEL Frame_Shift_Del 23 153716700 A - 15 87 BRCA TCGA-A8-A07R POLA1 SNP Nonsense_Mutation 23 25014005 C T 23 45 BRCA TCGA-A8-A07R SLC35A2 DEL Frame_Shift_Del 23 48767129 C - 18 74 BRCA TCGA-A8-A07R AR SNP Missense_Mutation 23 66931270 C A 32 62 BRCA TCGA-A8-A07R CXCR3 SNP Missense_Mutation 23 70837027 C T 32 93 BRCA TCGA-A8-A07R ADPRH SNP Nonsense_Mutation 3 119306587 C A 28 62 BRCA TCGA-A8-A07R C3orf25 SNP Missense_Mutation 3 129123000 C T 27 50 BRCA TCGA-A8-A07R ESYT3 SNP Missense_Mutation 3 138153870 G A 38 54 BRCA TCGA-A8-A07R RTP2 SNP Missense_Mutation 3 187419769 G C 46 63 BRCA TCGA-A8-A07R NEK10 SNP Missense_Mutation 3 27233594 G C 40 76 BRCA TCGA-A8-A07R VPRBP SNP Nonsense_Mutation 3 51450832 G A 46 97 BRCA TCGA-A8-A07R FABP2 SNP Missense_Mutation 4 120243210 G C 48 49 BRCA TCGA-A8-A07R BBS12 SNP Silent 4 123664820 G C 47 58 BRCA TCGA-A8-A07R WHSC1 SNP Missense_Mutation 4 1936971 C G 17 53 BRCA TCGA-A8-A07R ANAPC4 SNP Splice_Site 4 25408876 G T 44 92 BRCA TCGA-A8-A07R COX7B2 SNP Missense_Mutation 4 46737103 T C 50 68 BRCA TCGA-A8-A07R NPFFR2 SNP Missense_Mutation 4 73012701 G C 36 44 BRCA TCGA-A8-A07R CPZ SNP Missense_Mutation 4 8603072 G C 38 49 BRCA TCGA-A8-A07R CTNND2 INS Frame_Shift_Ins 5 11364989 - A 35 54 BRCA TCGA-A8-A07R PCDHGB1 SNP Silent 5 140731702 G A 38 39 BRCA TCGA-A8-A07R PCDHGA4 SNP Silent 5 140736102 C A 29 49 BRCA TCGA-A8-A07R TRIO SNP Silent 5 14492843 C G 23 49 BRCA TCGA-A8-A07R FAT2 SNP Silent 5 150946624 G A 42 42 BRCA TCGA-A8-A07R DOCK2 INS Frame_Shift_Ins 5 169446012 - T 11 90 BRCA TCGA-A8-A07R BASP1 SNP Silent 5 17275511 C T 23 47 BRCA TCGA-A8-A07R FAM193B SNP Missense_Mutation 5 176963678 C T 23 83 BRCA TCGA-A8-A07R SLC45A2 SNP Missense_Mutation 5 33954536 C G 25 89 BRCA TCGA-A8-A07R FAM169A SNP Missense_Mutation 5 74109758 C A 32 92 BRCA TCGA-A8-A07R KIAA0825 DEL In_Frame_Del 5 93798258 TTG - 52 80 BRCA TCGA-A8-A07R NHSL1 SNP Missense_Mutation 6 138751578 C A 30 71 BRCA TCGA-A8-A07R LATS1 SNP Missense_Mutation 6 149983176 G C 41 84 BRCA TCGA-A8-A07R PCMT1 SNP Missense_Mutation 6 150092324 G C 36 96 BRCA TCGA-A8-A07R WTAP SNP Missense_Mutation 6 160164787 G A 37 100 BRCA TCGA-A8-A07R IGF2R SNP Missense_Mutation 6 160509069 C G 17 60 BRCA TCGA-A8-A07R OR2B3 SNP Missense_Mutation 6 29055004 A G 11 69 BRCA TCGA-A8-A07R C6orf25 SNP Missense_Mutation 6 31691562 G A 39 60 BRCA TCGA-A8-A07R PPP2R5D SNP Missense_Mutation 6 42977150 C A 22 100 BRCA TCGA-A8-A07R ENPP4 SNP Missense_Mutation 6 46108934 T G 63 60 BRCA TCGA-A8-A07R PHF3 SNP Missense_Mutation 6 64422056 A C 3 46 BRCA TCGA-A8-A07R EYS SNP Missense_Mutation 6 64436527 C G 30 90 BRCA TCGA-A8-A07R COL12A1 SNP Missense_Mutation 6 75839836 G A 41 76 BRCA TCGA-A8-A07R FILIP1 SNP Silent 6 76022557 G A 38 36 BRCA TCGA-A8-A07R UBE2J1 SNP Missense_Mutation 6 90045035 G C 46 97 BRCA TCGA-A8-A07R MDN1 SNP Nonsense_Mutation 6 90397097 G A 45 80 BRCA TCGA-A8-A07R DOCK4 DEL Splice_Site 7 111644188 TGTAAA - 55 84 BRCA TCGA-A8-A07R SLC13A1 SNP Nonsense_Mutation 7 122769492 G A 48 65 BRCA TCGA-A8-A07R FAM131B SNP Missense_Mutation 7 143054107 C T 26 67 BRCA TCGA-A8-A07R ZNF862 SNP Missense_Mutation 7 149558861 C T 19 56 BRCA TCGA-A8-A07R MLL3 SNP Missense_Mutation 7 151860091 A G 2 60 BRCA TCGA-A8-A07R STK31 SNP Splice_Site 7 23751906 G T 44 77 BRCA TCGA-A8-A07R CLIP2 SNP Missense_Mutation 7 73791030 G A 37 73 BRCA TCGA-A8-A07R MAGI2 SNP Missense_Mutation 7 77764386 T A 51 94 BRCA TCGA-A8-A07R CACNA2D1 DEL In_Frame_Del 7 81579759 GATTCCAAT - 41 57 BRCA TCGA-A8-A07R TMEM74 SNP Missense_Mutation 8 109796471 G A 40 59 BRCA TCGA-A8-A07R PKHD1L1 SNP Missense_Mutation 8 110520355 C T 24 61 BRCA TCGA-A8-A07R MTSS1 SNP Splice_site 8 125601952 G T 38 50 BRCA TCGA-A8-A07R CSMD1 SNP Silent 8 2857623 A T 6 81 BRCA TCGA-A8-A07R NRG1 SNP Silent 8 32621347 G T 39 50 BRCA TCGA-A8-A07R ANK1 SNP Missense_Mutation 8 41530136 C T 23 59 BRCA TCGA-A8-A07R CLVS1 SNP Missense_Mutation 8 62412081 C G 26 92 BRCA TCGA-A8-A07R ZBTB10 SNP Missense_Mutation 8 81399784 C G 21 80 BRCA TCGA-A8-A07R PTDSS1 SNP Missense_Mutation 8 97285557 G T 41 80 BRCA TCGA-A8-A07R OR13C9 SNP Missense_Mutation 9 107380041 A T 7 72 BRCA TCGA-A8-A07R LRSAM1 DEL Frame_Shift_Del 9 130245270 CT - 20 67 BRCA TCGA-A8-A07R PPP2R4 SNP Missense_Mutation 9 131890307 G C 46 33 BRCA TCGA-A8-A07R DDX31 SNP Missense_Mutation 9 135505736 G A 39 73 BRCA TCGA-A8-A07R ACO1 SNP Missense_Mutation 9 32440470 T A 59 91 BRCA TCGA-A8-A07R DNAI1 SNP Silent 9 34500814 C A 26 54 BRCA TCGA-A8-A07R FAM221B SNP Missense_Mutation 9 35819000 C T 25 47 BRCA TCGA-A8-A07R JAK2 SNP Missense_Mutation 9 5022151 T C 55 80 BRCA TCGA-A8-A07U HNRNPU SNP Silent 1 245027315 G A 33 65 BRCA TCGA-A8-A07U ABCB9 SNP Missense_Mutation 12 123424624 G C 43 54 BRCA TCGA-A8-A07U POC1B SNP Missense_Mutation 12 89818991 C A 27 78 BRCA TCGA-A8-A07U SKA3 SNP Silent 13 21742333 C A 29 44 BRCA TCGA-A8-A07U MEFV SNP Missense_Mutation 16 3293331 C A 26 97 BRCA TCGA-A8-A07U CACNA1G SNP Missense_Mutation 17 48669336 T G 51 50 BRCA TCGA-A8-A07U TP53 DEL Frame_Shift_Del 17 7576863 A - 9 60 BRCA TCGA-A8-A07U SLC1A6 SNP Silent 19 15061145 G A 37 48 BRCA TCGA-A8-A07U PSG6 SNP Missense_Mutation 19 43414783 G A 40 18 BRCA TCGA-A8-A07U MUM1L1 DEL In_Frame_Del 23 105449533 TCT - 54 43 BRCA TCGA-A8-A07U TPRG1 SNP Missense_Mutation 3 188925280 C T 23 52 BRCA TCGA-A8-A07U PCDHB10 SNP Silent 5 140574447 G A 39 25 BRCA TCGA-A8-A07U TULP4 SNP Silent 6 158924160 G C 45 38 BRCA TCGA-A8-A07U DDR1 SNP Missense_Mutation 6 30864625 G C 37 96 BRCA TCGA-A8-A07U PTPN12 SNP Missense_Mutation 7 77210798 A T 16 69 BRCA TCGA-A8-A07W RAB25 SNP Missense_Mutation 1 156038184 G A 46 98 BRCA TCGA-A8-A07W SPEN SNP Silent 1 16258804 G C 45 55 BRCA TCGA-A8-A07W EMC1 DEL In_Frame_Del 1 19546186 CTC - 32 75 BRCA TCGA-A8-A07W HHAT SNP Silent 1 210637883 C T 19 48 BRCA TCGA-A8-A07W XKR8 SNP Silent 1 28293114 G C 47 53 BRCA TCGA-A8-A07W GMEB1 SNP Missense_Mutation 1 29041080 C T 31 67 BRCA TCGA-A8-A07W TNFRSF9 SNP Silent 1 7995128 G A 39 26 BRCA TCGA-A8-A07W HPS6 SNP Missense_Mutation 10 103825919 G A 46 62 BRCA TCGA-A8-A07W MCM10 SNP Missense_Mutation 10 13237244 T G 55 69 BRCA TCGA-A8-A07W CACNB2 SNP Missense_Mutation 10 18828215 A T 3 50 BRCA TCGA-A8-A07W MYO3A SNP Silent 10 26462784 G A 35 44 BRCA TCGA-A8-A07W GAD2 SNP Missense_Mutation 10 26589870 C T 19 98 BRCA TCGA-A8-A07W PCDH15 SNP Silent 10 55581735 A T 15 31 BRCA TCGA-A8-A07W CCAR1 SNP Missense_Mutation 10 70547978 A C 14 89 BRCA TCGA-A8-A07W PRF1 DEL Frame_Shift_Del 10 72358847 G - 39 39 BRCA TCGA-A8-A07W CDH23 SNP Silent 10 73553339 C T 19 34 BRCA TCGA-A8-A07W IFIT3 SNP Silent 10 91099111 C A 24 46 BRCA TCGA-A8-A07W CYP2C19 SNP Missense_Mutation 10 96609770 G T 35 54 BRCA TCGA-A8-A07W PCSK7 SNP Splice_Site 11 117098039 C T 32 86 BRCA TCGA-A8-A07W TSG101 SNP Missense_Mutation 11 18503191 C T 30 98 BRCA TCGA-A8-A07W OR4S1 SNP Missense_Mutation 11 48328672 T C 60 77 BRCA TCGA-A8-A07W OR52B6 SNP Missense_Mutation 11 5603050 G A 35 54 BRCA TCGA-A8-A07W FZD4 SNP Silent 11 86663462 G A 41 72 BRCA TCGA-A8-A07W FAT3 SNP Missense_Mutation 11 92086557 G T 43 86 BRCA TCGA-A8-A07W HECTD4 SNP Splice_site 12 112707652 A G 6 90 BRCA TCGA-A8-A07W LOC100287897 SNP Missense_Mutation 12 113401111 C T 26 43 BRCA TCGA-A8-A07W BORA SNP Missense_Mutation 13 73321012 G C 33 55 BRCA TCGA-A8-A07W NRXN3 SNP Missense_Mutation 14 79181294 G A 38 80 BRCA TCGA-A8-A07W FANCI SNP Missense_Mutation 15 89850860 C G 32 100 BRCA TCGA-A8-A07W ZNF205 SNP Missense_Mutation 16 3170063 C T 23 61 BRCA TCGA-A8-A07W LOC100132364 SNP Missense_Mutation 16 69776159 C T 17 59 BRCA TCGA-A8-A07W TADA2A SNP Missense_Mutation 17 35825613 T G 59 58 BRCA TCGA-A8-A07W TP53 SNP Missense_Mutation 17 7578394 T C 51 89 BRCA TCGA-A8-A07W TNRC6C SNP Missense_Mutation 17 76045634 C T 19 83 BRCA TCGA-A8-A07W MYH10 SNP Silent 17 8396259 G A 40 52 BRCA TCGA-A8-A07W MYO5B SNP Missense_Mutation 18 47500828 G A 38 100 BRCA TCGA-A8-A07W OR7A10 SNP Silent 19 14952057 G T 45 45 BRCA TCGA-A8-A07W ZNF536 SNP Missense_Mutation 19 30936439 G A 38 97 BRCA TCGA-A8-A07W ENSG00000224476 SNP Missense_Mutation 19 41675922 G A 38 61 BRCA TCGA-A8-A07W PSG3 SNP Missense_Mutation 19 43242928 C A 28 47 BRCA TCGA-A8-A07W ZNF28 SNP Silent 19 53303907 A G 12 48 BRCA TCGA-A8-A07W CERS4 SNP Missense_Mutation 19 8316117 C T 27 61 BRCA TCGA-A8-A07W NXPH2 SNP Missense_Mutation 2 139429217 C T 30 54 BRCA TCGA-A8-A07W KIAA1715 SNP Missense_Mutation 2 176829238 G C 46 66 BRCA TCGA-A8-A07W TFPI SNP Splice_Site 2 188331770 C G 24 66 BRCA TCGA-A8-A07W PUM2 SNP Missense_Mutation 2 20508328 C T 19 89 BRCA TCGA-A8-A07W FASTKD2 SNP Missense_Mutation 2 207636961 G C 33 88 BRCA TCGA-A8-A07W DPYSL5 SNP Missense_Mutation 2 27164906 G A 38 99 BRCA TCGA-A8-A07W SLC3A1 SNP Missense_Mutation 2 44528257 G A 42 95 BRCA TCGA-A8-A07W CLEC4F SNP Missense_Mutation 2 71036922 C A 26 61 BRCA TCGA-A8-A07W TGM6 SNP Missense_Mutation 20 2384311 C T 27 81 BRCA TCGA-A8-A07W HAO1 SNP Missense_Mutation 20 7920978 G C 46 90 BRCA TCGA-A8-A07W LOC100128009 SNP Silent 22 17414867 G T 41 51 BRCA TCGA-A8-A07W MID1 SNP Missense_Mutation 23 10535323 C T 28 99 BRCA TCGA-A8-A07W ENOX2 SNP Missense_Mutation 23 129804095 C A 32 89 BRCA TCGA-A8-A07W SPRY3 SNP Nonsense_Mutation 23 155004151 T A 59 51 BRCA TCGA-A8-A07W NLGN4X SNP Missense_Mutation 23 5821686 C T 31 91 BRCA TCGA-A8-A07W NHSL2 SNP Missense_Mutation 23 71360543 G A 39 25 BRCA TCGA-A8-A07W CD96 SNP Splice_Site 3 111304168 A T 3 60 BRCA TCGA-A8-A07W ROPN1B SNP Silent 3 125690996 C T 29 52 BRCA TCGA-A8-A07W ROPN1B SNP Missense_Mutation 3 125694476 A T 13 64 BRCA TCGA-A8-A07W CLSTN2 SNP Silent 3 140178508 G A 33 57 BRCA TCGA-A8-A07W P2RY1 SNP Silent 3 152554273 G C 47 57 BRCA TCGA-A8-A07W PLCH1 SNP Missense_Mutation 3 155199955 G C 42 56 BRCA TCGA-A8-A07W TBC1D5 SNP Missense_Mutation 3 17202622 G T 35 60 BRCA TCGA-A8-A07W MCF2L2 SNP Missense_Mutation 3 182923992 A T 3 68 BRCA TCGA-A8-A07W ECE2 SNP Missense_Mutation 3 183995195 G A 38 86 BRCA TCGA-A8-A07W ZNF662 SNP Missense_Mutation 3 42956359 G A 40 49 BRCA TCGA-A8-A07W STX19 SNP Missense_Mutation 3 93733777 C G 20 52 BRCA TCGA-A8-A07W SMARCA5 SNP Missense_Mutation 4 144460080 C A 32 100 BRCA TCGA-A8-A07W KCNIP1 SNP Splice_Site 5 170149715 A C 7 89 BRCA TCGA-A8-A07W C6 SNP Missense_Mutation 5 41201759 C G 28 50 BRCA TCGA-A8-A07W GLRX SNP Missense_Mutation 5 95152314 A G 4 65 BRCA TCGA-A8-A07W ZBTB24 SNP Missense_Mutation 6 109803035 C G 17 82 BRCA TCGA-A8-A07W NEDD9 SNP Missense_Mutation 6 11191170 C T 26 56 BRCA TCGA-A8-A07W SLC17A5 SNP Silent 6 74331662 C T 19 36 BRCA TCGA-A8-A07W CD109 SNP Missense_Mutation 6 74519742 C G 20 68 BRCA TCGA-A8-A07W PM20D2 SNP Missense_Mutation 6 89871591 C G 17 55 BRCA TCGA-A8-A07W TMEM106B SNP Missense_Mutation 7 12269421 T G 61 53 BRCA TCGA-A8-A07W EXT1 DEL Frame_Shift_Del 8 119122327 T - 54 92 BRCA TCGA-A8-A07W EXT1 DEL In_Frame_Del 8 119122329 ATACTCGGT - 8 55 BRCA TCGA-A8-A07W NCBP1 SNP Missense_Mutation 9 100418351 C G 32 63 BRCA TCGA-A8-A07W SVEP1 SNP Missense_Mutation 9 113245928 A G 10 76 BRCA TCGA-A8-A07W PAPPA SNP Silent 9 119106918 C T 22 62 BRCA TCGA-A8-A07W TYRP1 SNP Missense_Mutation 9 12695736 G C 44 48 BRCA TCGA-A8-A07W CNTLN SNP Missense_Mutation 9 17502601 A G 1 58 BRCA TCGA-A8-A07W MELK SNP Silent 9 36665550 G A 38 48 BRCA TCGA-A8-A07Z HPS1 SNP Missense_Mutation 10 100185607 A G 6 88 BRCA TCGA-A8-A07Z DDX47 SNP Silent 12 12974215 A G 6 26 BRCA TCGA-A8-A07Z ACSS3 SNP Silent 12 81503342 T C 63 66 BRCA TCGA-A8-A07Z EEA1 SNP Silent 12 93195436 C T 32 51 BRCA TCGA-A8-A07Z ZFYVE26 SNP Missense_Mutation 14 68236344 A C 6 93 BRCA TCGA-A8-A07Z ATG2B SNP Missense_Mutation 14 96783628 T A 58 77 BRCA TCGA-A8-A07Z APBA2 DEL Frame_Shift_Del 15 29397755 CA - 25 73 BRCA TCGA-A8-A07Z FGF7 SNP Translation_Start_Site 15 49716270 C T 19 71 BRCA TCGA-A8-A07Z CA5A SNP Silent 16 87921771 C T 19 23 BRCA TCGA-A8-A07Z MAP2K4 SNP Nonsense_Mutation 17 11998993 T A 51 59 BRCA TCGA-A8-A07Z FLII SNP Missense_Mutation 17 18158120 C G 27 69 BRCA TCGA-A8-A07Z MEX3C SNP Missense_Mutation 18 48703431 C T 25 83 BRCA TCGA-A8-A07Z PDE1A SNP Missense_Mutation 2 183099185 G A 41 83 BRCA TCGA-A8-A07Z IL1RAPL1 SNP Silent 23 29935618 G A 44 49 BRCA TCGA-A8-A07Z PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A07Z CHRD SNP Missense_Mutation 3 184102997 C T 27 62 BRCA TCGA-A8-A07Z SLC4A4 SNP Missense_Mutation 4 72121014 C A 25 96 BRCA TCGA-A8-A07Z PCDHB16 SNP Missense_Mutation 5 140564268 C T 27 48 BRCA TCGA-A8-A07Z SLC22A2 DEL Frame_Shift_Del 6 160671727 G - 39 78 BRCA TCGA-A8-A07Z OR10C1 SNP Silent 6 29408425 C T 26 42 BRCA TCGA-A8-A07Z MLL3 DEL Frame_Shift_Del 7 151849846 A - 13 60 BRCA TCGA-A8-A07Z RSPH10B SNP Missense_Mutation 7 5992828 C T 22 82 BRCA TCGA-A8-A07Z CIZ1 SNP Nonsense_Mutation 9 130931780 G A 38 52 BRCA TCGA-A8-A07Z FREM1 SNP Missense_Mutation 9 14746441 G A 42 52 BRCA TCGA-A8-A081 HSD3B2 SNP Missense_Mutation 1 119962135 C G 30 45 BRCA TCGA-A8-A081 TNFSF18 SNP Missense_Mutation 1 173019924 A C 3 73 BRCA TCGA-A8-A081 PPFIA4 SNP Silent 1 203024614 G A 38 23 BRCA TCGA-A8-A081 CAPN2 SNP Missense_Mutation 1 223940644 G A 46 100 BRCA TCGA-A8-A081 CAPN2 SNP Missense_Mutation 1 223959610 G A 39 83 BRCA TCGA-A8-A081 OR2L2 SNP Missense_Mutation 1 248201688 G T 41 61 BRCA TCGA-A8-A081 DLGAP3 SNP Silent 1 35350653 G T 33 66 BRCA TCGA-A8-A081 INPP5B SNP Missense_Mutation 1 38341331 G C 35 62 BRCA TCGA-A8-A081 OSBPL9 SNP Nonsense_Mutation 1 52227565 C T 25 84 BRCA TCGA-A8-A081 PER3 SNP Silent 1 7886604 G A 39 24 BRCA TCGA-A8-A081 HSD17B7P2 SNP Missense_Mutation 10 38652500 G A 41 71 BRCA TCGA-A8-A081 HSD17B7P2 SNP Silent 10 38652511 G A 33 42 BRCA TCGA-A8-A081 KAT6B SNP Missense_Mutation 10 76729488 C G 31 55 BRCA TCGA-A8-A081 MUC6 SNP Silent 11 1027279 G A 40 46 BRCA TCGA-A8-A081 OR5D16 SNP Missense_Mutation 11 55607005 C G 24 54 BRCA TCGA-A8-A081 PYGM SNP Missense_Mutation 11 64514134 G C 33 60 BRCA TCGA-A8-A081 CCDC87 SNP Missense_Mutation 11 66358013 C T 23 77 BRCA TCGA-A8-A081 CYB5R2 SNP Missense_Mutation 11 7687778 C T 32 83 BRCA TCGA-A8-A081 UTP20 SNP Missense_Mutation 12 101750765 C T 19 74 BRCA TCGA-A8-A081 DNAH10 SNP Missense_Mutation 12 124403277 C T 27 67 BRCA TCGA-A8-A081 PFKM SNP Missense_Mutation 12 48539040 C T 27 79 BRCA TCGA-A8-A081 USP15 INS Frame_Shift_Ins 12 62777654 - GATATCA 47 100 BRCA TCGA-A8-A081 APOBEC1 SNP Missense_Mutation 12 7805264 G A 40 50 BRCA TCGA-A8-A081 SLITRK6 SNP Missense_Mutation 13 86369619 C T 30 86 BRCA TCGA-A8-A081 ISLR SNP Missense_Mutation 15 74467792 C T 19 81 BRCA TCGA-A8-A081 DNAAF1 SNP Missense_Mutation 16 84208293 G A 33 78 BRCA TCGA-A8-A081 MYH1 SNP Silent 17 10419370 G C 45 86 BRCA TCGA-A8-A081 USP22 SNP Missense_Mutation 17 20908248 C T 29 96 BRCA TCGA-A8-A081 KRT19 INS Frame_Shift_Ins 17 39681142 - G 31 97 BRCA TCGA-A8-A081 MRC2 SNP Missense_Mutation 17 60742270 C G 32 52 BRCA TCGA-A8-A081 ERN1 SNP Silent 17 62137922 C T 19 37 BRCA TCGA-A8-A081 LRRC37A3 SNP Missense_Mutation 17 62856170 A G 7 49 BRCA TCGA-A8-A081 TP53 SNP Missense_Mutation 17 7578508 C T 25 82 BRCA TCGA-A8-A081 DSG3 SNP Missense_Mutation 18 29055687 G A 33 74 BRCA TCGA-A8-A081 TTR SNP Silent 18 29178548 C T 19 42 BRCA TCGA-A8-A081 CD226 SNP Missense_Mutation 18 67614147 T C 51 47 BRCA TCGA-A8-A081 SLC35E1 SNP Silent 19 16678954 G T 45 63 BRCA TCGA-A8-A081 ZNF536 SNP Missense_Mutation 19 31039300 T G 64 90 BRCA TCGA-A8-A081 CEP89 SNP Missense_Mutation 19 33390801 C T 32 74 BRCA TCGA-A8-A081 ZNF235 SNP Missense_Mutation 19 44792449 C A 17 94 BRCA TCGA-A8-A081 GRIN2D SNP Splice_Site 19 48945641 T C 57 73 BRCA TCGA-A8-A081 PTPRS SNP Missense_Mutation 19 5265033 T C 64 73 BRCA TCGA-A8-A081 ZNF600 SNP Missense_Mutation 19 53270087 C G 29 82 BRCA TCGA-A8-A081 ZNF549 SNP Missense_Mutation 19 58048854 G C 33 45 BRCA TCGA-A8-A081 SAP130 DEL In_Frame_Del 2 128774072 GGT - 35 85 BRCA TCGA-A8-A081 SCN7A SNP Missense_Mutation 2 167304187 C A 24 67 BRCA TCGA-A8-A081 XIRP2 SNP Missense_Mutation 2 168107195 C A 18 50 BRCA TCGA-A8-A081 XIRP2 SNP Missense_Mutation 2 168114995 G A 33 87 BRCA TCGA-A8-A081 ITGA4 SNP Missense_Mutation 2 182386929 A G 4 63 BRCA TCGA-A8-A081 ITGAV SNP Splice_Site 2 187520972 A T 15 89 BRCA TCGA-A8-A081 ITGAV SNP Silent 2 187521035 G T 48 39 BRCA TCGA-A8-A081 ITGAV SNP Missense_Mutation 2 187540353 T G 63 70 BRCA TCGA-A8-A081 SPHKAP SNP Missense_Mutation 2 228882135 C G 20 56 BRCA TCGA-A8-A081 BIRC6 SNP Splice_Site 2 32836514 G T 35 98 BRCA TCGA-A8-A081 PRKD3 SNP Missense_Mutation 2 37543649 G C 43 71 BRCA TCGA-A8-A081 SEMA4F SNP Missense_Mutation 2 74900921 G A 38 48 BRCA TCGA-A8-A081 CDC25B SNP Missense_Mutation 20 3785499 T C 51 81 BRCA TCGA-A8-A081 ZNF217 SNP Missense_Mutation 20 52192376 C G 28 59 BRCA TCGA-A8-A081 SEC14L6 SNP Missense_Mutation 22 30921438 C T 23 56 BRCA TCGA-A8-A081 NXF5 SNP Missense_Mutation 23 101096037 C T 32 62 BRCA TCGA-A8-A081 NXF5 SNP Missense_Mutation 23 101096477 C G 29 63 BRCA TCGA-A8-A081 GPRASP2 DNP Nonsense_Mutation 23 101970846 TC AA 62 52 BRCA TCGA-A8-A081 FRMPD3 SNP Missense_Mutation 23 106845785 G C 42 74 BRCA TCGA-A8-A081 UTP14A SNP Missense_Mutation 23 129058966 A C 9 61 BRCA TCGA-A8-A081 ATP11C SNP Missense_Mutation 23 138869362 C G 32 50 BRCA TCGA-A8-A081 GABRQ SNP Missense_Mutation 23 151815455 G A 38 94 BRCA TCGA-A8-A081 FAM47A SNP Missense_Mutation 23 34148844 G C 39 65 BRCA TCGA-A8-A081 PRICKLE3 SNP Silent 23 49032244 C T 23 39 BRCA TCGA-A8-A081 ZC3H12B SNP Missense_Mutation 23 64708837 G T 33 51 BRCA TCGA-A8-A081 ERCC6L SNP Silent 23 71426034 A T 11 50 BRCA TCGA-A8-A081 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A081 FGF12 SNP Missense_Mutation 3 192125874 C T 23 95 BRCA TCGA-A8-A081 CAMKV SNP Splice_Site 3 49899764 C G 18 81 BRCA TCGA-A8-A081 KIAA1109 SNP Missense_Mutation 4 123249460 G A 45 77 BRCA TCGA-A8-A081 SORBS2 SNP Missense_Mutation 4 186544917 C G 29 100 BRCA TCGA-A8-A081 PRDM8 SNP Missense_Mutation 4 81123205 G A 40 49 BRCA TCGA-A8-A081 PRKG2 SNP Missense_Mutation 4 82092908 T C 49 59 BRCA TCGA-A8-A081 PCDHB4 SNP Silent 5 140502504 C T 31 59 BRCA TCGA-A8-A081 ARAP3 SNP Missense_Mutation 5 141052170 C T 23 92 BRCA TCGA-A8-A081 GEMIN5 SNP Silent 5 154306969 T C 57 49 BRCA TCGA-A8-A081 GPR6 SNP Missense_Mutation 6 110301379 G A 40 99 BRCA TCGA-A8-A081 PHACTR1 SNP Missense_Mutation 6 13053669 G A 38 100 BRCA TCGA-A8-A081 SGK1 SNP Missense_Mutation 6 134495199 A C 3 65 BRCA TCGA-A8-A081 LPA SNP Missense_Mutation 6 161026093 G T 46 49 BRCA TCGA-A8-A081 ANKS1A SNP Missense_Mutation 6 35046420 G A 38 67 BRCA TCGA-A8-A081 BAI3 SNP Missense_Mutation 6 69758178 G T 33 96 BRCA TCGA-A8-A081 MDN1 SNP Missense_Mutation 6 90353899 T C 58 93 BRCA TCGA-A8-A081 TMEM209 SNP Missense_Mutation 7 129832501 G A 33 82 BRCA TCGA-A8-A081 RBAK SNP Splice_Site 7 5024707 G T 44 75 BRCA TCGA-A8-A081 GTF2IRD2 SNP Nonsense_Mutation 7 74237282 G A 38 52 BRCA TCGA-A8-A081 COL1A2 SNP Missense_Mutation 7 94045763 G A 44 100 BRCA TCGA-A8-A081 CSMD3 SNP Silent 8 113358357 G A 46 55 BRCA TCGA-A8-A081 DEFB4B SNP Missense_Mutation 8 7272523 G C 44 50 BRCA TCGA-A8-A081 ESRP1 SNP Silent 8 95690588 G T 40 15 BRCA TCGA-A8-A081 NR4A3 SNP Silent 9 102595691 C T 30 52 BRCA TCGA-A8-A081 TNC SNP Missense_Mutation 9 117838356 T G 62 89 BRCA TCGA-A8-A081 CACNA1B SNP Missense_Mutation 9 140846819 G A 40 100 BRCA TCGA-A8-A081 GLDC SNP Missense_Mutation 9 6588676 C T 23 100 BRCA TCGA-A8-A081 ZNF510 DEL Frame_Shift_Del 9 99521488 TCTCCCCAGTGTGAGTTCTCTGATG - 62 81 BRCA TCGA-A8-A081 ZNF510 SNP Silent 9 99521789 G A 33 60 BRCA TCGA-A8-A082 TRIM8 SNP Missense_Mutation 10 104416743 G T 43 65 BRCA TCGA-A8-A082 C11orf63 SNP Silent 11 122828073 G A 38 52 BRCA TCGA-A8-A082 OAS2 SNP Missense_Mutation 12 113435383 C T 19 71 BRCA TCGA-A8-A082 EP400 SNP Silent 12 132551471 C T 31 30 BRCA TCGA-A8-A082 PABPC3 SNP Missense_Mutation 13 25670433 C A 22 78 BRCA TCGA-A8-A082 FOXA1 SNP Missense_Mutation 14 38061240 G A 41 92 BRCA TCGA-A8-A082 VIPAS39 INS Frame_Shift_Ins 14 77910639 - TTGTC 36 99 BRCA TCGA-A8-A082 MGA SNP Missense_Mutation 15 41988487 C G 28 61 BRCA TCGA-A8-A082 MRPL46 SNP Missense_Mutation 15 89002851 T G 58 66 BRCA TCGA-A8-A082 PPL SNP Silent 16 4937211 G A 47 55 BRCA TCGA-A8-A082 TOX3 SNP Nonsense_Mutation 16 52484429 G T 44 52 BRCA TCGA-A8-A082 BPTF SNP Splice_site 17 65925453 C T 27 49 BRCA TCGA-A8-A082 PDE11A SNP Missense_Mutation 2 178682608 C T 29 86 BRCA TCGA-A8-A082 AAK1 SNP Splice_site 2 69741603 C T 23 51 BRCA TCGA-A8-A082 CPNE1 SNP Nonsense_Mutation 20 34215310 G T 44 53 BRCA TCGA-A8-A082 MMP9 SNP Missense_Mutation 20 44640290 G A 38 54 BRCA TCGA-A8-A082 CSNK1E SNP Missense_Mutation 22 38694842 G T 44 66 BRCA TCGA-A8-A082 CYP2D6 SNP Silent 22 42525162 G A 39 48 BRCA TCGA-A8-A082 UTP14A SNP Silent 23 129059021 A G 15 52 BRCA TCGA-A8-A082 CLDN16 SNP Silent 3 190122573 G A 40 30 BRCA TCGA-A8-A082 NAA11 SNP Silent 4 80246828 C T 27 46 BRCA TCGA-A8-A082 MAP3K1 DEL In_Frame_Del 5 56183243 AGAATT - 3 59 BRCA TCGA-A8-A082 MAP3K1 DEL Frame_Shift_Del 5 56183311 A - 10 56 BRCA TCGA-A8-A082 ENPP3 SNP Missense_Mutation 6 132054845 G C 39 67 BRCA TCGA-A8-A082 TBX18 SNP Silent 6 85446535 C T 23 26 BRCA TCGA-A8-A082 CPA4 SNP Nonsense_Mutation 7 129939179 C T 25 56 BRCA TCGA-A8-A082 SLC13A4 SNP Missense_Mutation 7 135376383 G A 39 64 BRCA TCGA-A8-A082 C8orf80 SNP Splice_Site 8 27903043 C A 18 76 BRCA TCGA-A8-A082 GDAP1 SNP Missense_Mutation 8 75276279 G A 38 96 BRCA TCGA-A8-A082 COL27A1 SNP Missense_Mutation 9 116930472 C G 32 63 BRCA TCGA-A8-A082 APTX SNP Missense_Mutation 9 33001567 C A 30 55 BRCA TCGA-A8-A083 PBXIP1 SNP Missense_Mutation 1 154919991 G C 42 52 BRCA TCGA-A8-A083 C1orf101 SNP Missense_Mutation 1 244735733 A T 6 52 BRCA TCGA-A8-A083 GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-A8-A083 CASP1 SNP Missense_Mutation 11 104897079 C A 31 51 BRCA TCGA-A8-A083 POLR1D SNP Missense_Mutation 13 28197146 C T 32 71 BRCA TCGA-A8-A083 WDR72 SNP Missense_Mutation 15 53907944 T C 52 64 BRCA TCGA-A8-A083 DNAH9 SNP Missense_Mutation 17 11865565 G A 41 93 BRCA TCGA-A8-A083 PSMB6 SNP Missense_Mutation 17 4701319 A G 16 64 BRCA TCGA-A8-A083 LPO SNP Missense_Mutation 17 56326498 T C 59 38 BRCA TCGA-A8-A083 DOCK6 INS Frame_Shift_Ins 19 11325233 - CCAT 6 90 BRCA TCGA-A8-A083 MUC16 SNP Missense_Mutation 19 9063372 T C 60 46 BRCA TCGA-A8-A083 SCN7A SNP Missense_Mutation 2 167328839 A C 14 90 BRCA TCGA-A8-A083 NCL SNP Missense_Mutation 2 232326283 T C 50 61 BRCA TCGA-A8-A083 APOBEC3A SNP Missense_Mutation 22 39357438 G A 38 50 BRCA TCGA-A8-A083 DCAF12L2 SNP Missense_Mutation 23 125298649 T A 57 79 BRCA TCGA-A8-A083 FAM122B SNP Missense_Mutation 23 133923290 C T 24 73 BRCA TCGA-A8-A083 SLC9A6 SNP Missense_Mutation 23 135126695 A T 9 73 BRCA TCGA-A8-A083 SLITRK2 INS Frame_Shift_Ins 23 144905128 - T 32 58 BRCA TCGA-A8-A083 MED12 SNP Missense_Mutation 23 70340968 A T 12 90 BRCA TCGA-A8-A083 LPP SNP Missense_Mutation 3 188592262 C G 24 69 BRCA TCGA-A8-A083 DLG1 SNP Missense_Mutation 3 196867092 T G 60 89 BRCA TCGA-A8-A083 LARS2 SNP Missense_Mutation 3 45583431 G T 48 68 BRCA TCGA-A8-A083 CENPE SNP Missense_Mutation 4 104062041 C A 32 48 BRCA TCGA-A8-A083 PCDHA7 SNP Missense_Mutation 5 140215913 G T 44 60 BRCA TCGA-A8-A083 GFM2 SNP Missense_Mutation 5 74026192 A G 16 89 BRCA TCGA-A8-A083 STXBP5 SNP Missense_Mutation 6 147684477 T A 49 93 BRCA TCGA-A8-A083 THBS2 SNP Silent 6 169629670 C T 32 52 BRCA TCGA-A8-A083 C7orf31 SNP Missense_Mutation 7 25176162 T C 62 63 BRCA TCGA-A8-A083 NOL6 SNP Missense_Mutation 9 33464042 G A 45 73 BRCA TCGA-A8-A084 CRNN SNP Missense_Mutation 1 152382287 C T 27 48 BRCA TCGA-A8-A084 PAPPA2 SNP Missense_Mutation 1 176738882 G A 38 62 BRCA TCGA-A8-A084 DLGAP3 SNP Missense_Mutation 1 35332720 C T 31 98 BRCA TCGA-A8-A084 GRIK3 SNP Nonsense_Mutation 1 37307537 C A 30 85 BRCA TCGA-A8-A084 BTF3L4 SNP Missense_Mutation 1 52530605 G A 45 88 BRCA TCGA-A8-A084 GBF1 SNP Splice_Site 10 104135342 G A 44 95 BRCA TCGA-A8-A084 FGFR2 SNP Missense_Mutation 10 123258034 A T 12 55 BRCA TCGA-A8-A084 CRTAC1 SNP Silent 10 99677378 G A 40 46 BRCA TCGA-A8-A084 DYNC2H1 INS Frame_Shift_Ins 11 103270428 - CGAT 2 51 BRCA TCGA-A8-A084 NXPE1 SNP Missense_Mutation 11 114393794 C A 32 55 BRCA TCGA-A8-A084 ESAM SNP Silent 11 124628269 G A 45 55 BRCA TCGA-A8-A084 OR52B2 SNP Missense_Mutation 11 6190763 T G 51 55 BRCA TCGA-A8-A084 SSH1 SNP Silent 12 109186215 C T 30 52 BRCA TCGA-A8-A084 TBX3 SNP Missense_Mutation 12 115120672 G A 36 100 BRCA TCGA-A8-A084 PDE3A SNP Silent 12 20766493 C T 23 32 BRCA TCGA-A8-A084 YAF2 SNP Missense_Mutation 12 42554570 C T 32 98 BRCA TCGA-A8-A084 KRT2 SNP Missense_Mutation 12 53041976 T A 54 89 BRCA TCGA-A8-A084 GLIPR1L2 SNP Missense_Mutation 12 75816731 G A 37 49 BRCA TCGA-A8-A084 ATP11A SNP Missense_Mutation 13 113516786 G A 38 81 BRCA TCGA-A8-A084 KLHL1 SNP Missense_Mutation 13 70681654 G C 47 82 BRCA TCGA-A8-A084 ATG14 SNP Missense_Mutation 14 55836555 C T 32 100 BRCA TCGA-A8-A084 ZFP36L1 SNP Missense_Mutation 14 69256881 C T 17 81 BRCA TCGA-A8-A084 LOC100288919 SNP Missense_Mutation 15 22319166 G T 44 48 BRCA TCGA-A8-A084 CASC5 SNP Missense_Mutation 15 40917599 G A 45 86 BRCA TCGA-A8-A084 CCDC33 SNP Missense_Mutation 15 74628287 G A 41 51 BRCA TCGA-A8-A084 ENSG00000205141 SNP Silent 15 99799775 C T 19 50 BRCA TCGA-A8-A084 CLEC16A SNP Silent 16 11154764 C T 30 63 BRCA TCGA-A8-A084 CLEC19A SNP Missense_Mutation 16 19310039 A G 12 61 BRCA TCGA-A8-A084 DNAH3 SNP Missense_Mutation 16 21156695 C A 29 58 BRCA TCGA-A8-A084 CLN3 SNP Missense_Mutation 16 28493476 A G 9 86 BRCA TCGA-A8-A084 SALL1 SNP Silent 16 51171179 T A 59 52 BRCA TCGA-A8-A084 TP53 INS Splice_Site 17 7578175 - CCTC 10 87 BRCA TCGA-A8-A084 DSG3 SNP Nonsense_Mutation 18 29054365 C T 29 71 BRCA TCGA-A8-A084 DOT1L SNP Missense_Mutation 19 2185865 A G 9 85 BRCA TCGA-A8-A084 ZNF99 SNP Missense_Mutation 19 22941252 C T 21 68 BRCA TCGA-A8-A084 LIPE SNP Missense_Mutation 19 42906899 C T 31 47 BRCA TCGA-A8-A084 KLK2 SNP Missense_Mutation 19 51379763 T C 64 48 BRCA TCGA-A8-A084 LILRA5 SNP Silent 19 54818710 T C 55 52 BRCA TCGA-A8-A084 ACSBG2 SNP Missense_Mutation 19 6147661 G A 39 83 BRCA TCGA-A8-A084 SLC9A2 SNP Missense_Mutation 2 103300701 C T 27 100 BRCA TCGA-A8-A084 PTPN4 SNP Missense_Mutation 2 120718455 G A 33 87 BRCA TCGA-A8-A084 COL3A1 SNP Silent 2 189870102 C T 19 56 BRCA TCGA-A8-A084 XRN2 SNP Nonsense_Mutation 20 21314348 G T 41 100 BRCA TCGA-A8-A084 SPO11 SNP Missense_Mutation 20 55908329 T C 52 82 BRCA TCGA-A8-A084 MYT1 SNP Missense_Mutation 20 62871685 G A 37 100 BRCA TCGA-A8-A084 TCF20 SNP Missense_Mutation 22 42607000 G A 38 69 BRCA TCGA-A8-A084 SSX7 SNP Missense_Mutation 23 52677374 C T 31 45 BRCA TCGA-A8-A084 ZXDA SNP Missense_Mutation 23 57935843 C A 21 87 BRCA TCGA-A8-A084 NCK1 SNP Missense_Mutation 3 136667105 A G 4 86 BRCA TCGA-A8-A084 SLC9A9 SNP Missense_Mutation 3 142985726 C T 29 86 BRCA TCGA-A8-A084 PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-A8-A084 IGF2BP2 SNP Missense_Mutation 3 185367245 A C 16 63 BRCA TCGA-A8-A084 ANK2 SNP Missense_Mutation 4 114277716 G C 47 53 BRCA TCGA-A8-A084 TECRL SNP Nonsense_Mutation 4 65180391 T A 53 67 BRCA TCGA-A8-A084 CHSY3 SNP Missense_Mutation 5 129243939 G T 41 60 BRCA TCGA-A8-A084 FAM13B SNP Missense_Mutation 5 137354686 G A 41 99 BRCA TCGA-A8-A084 PCDHA13 SNP Missense_Mutation 5 140262514 G A 37 60 BRCA TCGA-A8-A084 TCOF1 SNP Silent 5 149777996 G A 33 57 BRCA TCGA-A8-A084 CDH9 SNP Splice_site 5 26881732 A T 2 65 BRCA TCGA-A8-A084 ERBB2IP SNP Silent 5 65370887 C G 29 54 BRCA TCGA-A8-A084 AKD1 DEL Frame_Shift_Del 6 109815203 A - 16 50 BRCA TCGA-A8-A084 HLA-DRB1 SNP Splice_Site 6 32552156 C T 28 73 BRCA TCGA-A8-A084 CADPS2 SNP Missense_Mutation 7 122269330 C G 23 100 BRCA TCGA-A8-A084 CCZ1 SNP Missense_Mutation 7 5942373 C T 31 64 BRCA TCGA-A8-A084 MPDZ SNP Missense_Mutation 9 13175790 C G 29 95 BRCA TCGA-A8-A084 MPDZ SNP Missense_Mutation 9 13176329 C T 30 54 BRCA TCGA-A8-A084 DAPK1 SNP Nonsense_Mutation 9 90256921 C G 29 89 BRCA TCGA-A8-A085 PTPN22 SNP Missense_Mutation 1 114372636 C A 19 54 BRCA TCGA-A8-A085 PRAMEF2 SNP Missense_Mutation 1 12920065 C T 24 56 BRCA TCGA-A8-A085 LOC728989 SNP Missense_Mutation 1 146491230 T C 51 32 BRCA TCGA-A8-A085 KPRP SNP Missense_Mutation 1 152733095 C T 24 63 BRCA TCGA-A8-A085 ARHGEF11 SNP Missense_Mutation 1 156910022 A T 11 73 BRCA TCGA-A8-A085 OR6N1 SNP Nonsense_Mutation 1 158735696 A T 8 51 BRCA TCGA-A8-A085 UBR4 SNP Missense_Mutation 1 19497282 G C 33 98 BRCA TCGA-A8-A085 CAMSAP2 SNP Missense_Mutation 1 200818319 G T 46 77 BRCA TCGA-A8-A085 TIMM17A SNP Translation_Start_Site 1 201924622 T A 56 51 BRCA TCGA-A8-A085 USH2A SNP Silent 1 215916652 C T 21 61 BRCA TCGA-A8-A085 TAF5L SNP Missense_Mutation 1 229750159 T G 58 90 BRCA TCGA-A8-A085 HEATR1 SNP Silent 1 236749563 A C 11 54 BRCA TCGA-A8-A085 PABPC4 SNP Missense_Mutation 1 40028055 C G 30 100 BRCA TCGA-A8-A085 PTPRF SNP Missense_Mutation 1 44085063 G A 37 100 BRCA TCGA-A8-A085 USP33 SNP Missense_Mutation 1 78187538 G C 33 70 BRCA TCGA-A8-A085 C10orf82 SNP Silent 10 118424328 C T 24 56 BRCA TCGA-A8-A085 STAM SNP Missense_Mutation 10 17737209 G A 34 82 BRCA TCGA-A8-A085 PANX3 SNP Silent 11 124489690 G A 45 59 BRCA TCGA-A8-A085 TRPM5 SNP Missense_Mutation 11 2433403 C G 21 72 BRCA TCGA-A8-A085 MADD SNP Missense_Mutation 11 47336775 G T 41 96 BRCA TCGA-A8-A085 PRPF19 SNP Silent 11 60668156 C A 23 31 BRCA TCGA-A8-A085 SPTBN2 SNP Missense_Mutation 11 66455032 C G 32 73 BRCA TCGA-A8-A085 MAP6 SNP Silent 11 75298782 G C 33 45 BRCA TCGA-A8-A085 SCYL2 SNP Missense_Mutation 12 100720449 A G 12 92 BRCA TCGA-A8-A085 GAS2L3 SNP Missense_Mutation 12 101017635 G C 44 45 BRCA TCGA-A8-A085 DDX11 DEL Frame_Shift_Del 12 31242378 GCAG - 46 58 BRCA TCGA-A8-A085 BRCA2 DEL Frame_Shift_Del 13 32905149 AG - 3 49 BRCA TCGA-A8-A085 MYCBP2 SNP Nonsense_Mutation 13 77862348 G C 45 100 BRCA TCGA-A8-A085 TEP1 SNP Missense_Mutation 14 20872808 G C 34 69 BRCA TCGA-A8-A085 MYH7 SNP Nonsense_Mutation 14 23884326 G A 46 100 BRCA TCGA-A8-A085 C14orf177 SNP Missense_Mutation 14 99182541 G C 33 50 BRCA TCGA-A8-A085 RYR3 SNP Missense_Mutation 15 33936689 T C 58 90 BRCA TCGA-A8-A085 MAP1A SNP Missense_Mutation 15 43814046 G C 33 60 BRCA TCGA-A8-A085 MYO1E SNP Missense_Mutation 15 59470680 C A 26 99 BRCA TCGA-A8-A085 ACAN SNP Silent 15 89417113 C T 24 56 BRCA TCGA-A8-A085 MMP25 SNP Silent 16 3107152 C A 27 38 BRCA TCGA-A8-A085 USP7 SNP Missense_Mutation 16 8988986 C G 30 100 BRCA TCGA-A8-A085 KSR1 SNP Missense_Mutation 17 25909747 A G 10 75 BRCA TCGA-A8-A085 LIG3 SNP Missense_Mutation 17 33323606 A G 7 91 BRCA TCGA-A8-A085 SGCA SNP Nonsense_Mutation 17 48252661 G T 41 93 BRCA TCGA-A8-A085 CHERP SNP Silent 19 16652820 G A 43 52 BRCA TCGA-A8-A085 CPAMD8 SNP Silent 19 17014626 G T 33 70 BRCA TCGA-A8-A085 GRIN2D SNP Missense_Mutation 19 48917733 C A 26 73 BRCA TCGA-A8-A085 FAM171B SNP Splice_site 2 187616031 G A 35 86 BRCA TCGA-A8-A085 FN1 SNP Missense_Mutation 2 216264037 C G 24 59 BRCA TCGA-A8-A085 TNS1 SNP Missense_Mutation 2 218669195 C A 26 70 BRCA TCGA-A8-A085 COL4A4 SNP Silent 2 227872737 C T 29 49 BRCA TCGA-A8-A085 ATG4B SNP Missense_Mutation 2 242610773 T A 55 54 BRCA TCGA-A8-A085 EML4 SNP Missense_Mutation 2 42557268 A T 11 62 BRCA TCGA-A8-A085 ARID5A SNP Missense_Mutation 2 97217854 T A 58 59 BRCA TCGA-A8-A085 EIF5B SNP Missense_Mutation 2 99999274 G C 45 100 BRCA TCGA-A8-A085 KIAA1755 SNP Silent 20 36869429 C A 27 47 BRCA TCGA-A8-A085 BPI DEL Frame_Shift_Del 20 36939032 CACAT - 25 53 BRCA TCGA-A8-A085 SALL4 SNP Silent 20 50407393 C T 28 62 BRCA TCGA-A8-A085 TRAPPC10 SNP Missense_Mutation 21 45483643 G A 40 79 BRCA TCGA-A8-A085 CACNA1I SNP Silent 22 40059831 C T 31 18 BRCA TCGA-A8-A085 BCORL1 SNP Missense_Mutation 23 129148840 G T 41 78 BRCA TCGA-A8-A085 TKTL1 SNP Missense_Mutation 23 153524215 G T 47 80 BRCA TCGA-A8-A085 SEMA5B SNP Missense_Mutation 3 122641206 G T 42 67 BRCA TCGA-A8-A085 KALRN SNP Silent 3 124223779 C A 21 56 BRCA TCGA-A8-A085 ZNF385D SNP Silent 3 21462907 C T 28 62 BRCA TCGA-A8-A085 NAT6 SNP Silent 3 50334919 G A 43 52 BRCA TCGA-A8-A085 TET2 SNP Silent 4 106155363 T C 60 53 BRCA TCGA-A8-A085 GBA3 SNP Missense_Mutation 4 22820484 T A 61 70 BRCA TCGA-A8-A085 KIF4B SNP Missense_Mutation 5 154393807 A G 11 64 BRCA TCGA-A8-A085 HMMR SNP Splice_site 5 162905690 G T 41 69 BRCA TCGA-A8-A085 FGFR4 SNP Missense_Mutation 5 176520707 G A 46 96 BRCA TCGA-A8-A085 TARS SNP Missense_Mutation 5 33455166 A C 3 45 BRCA TCGA-A8-A085 TNPO1 SNP Missense_Mutation 5 72196887 G C 36 85 BRCA TCGA-A8-A085 SOBP SNP Missense_Mutation 6 107956522 G T 42 93 BRCA TCGA-A8-A085 ELOVL5 SNP Missense_Mutation 6 53134010 C G 22 97 BRCA TCGA-A8-A085 KCNQ5 SNP Missense_Mutation 6 73879506 A C 1 47 BRCA TCGA-A8-A085 CCNC SNP Missense_Mutation 6 99993065 C G 20 68 BRCA TCGA-A8-A085 ZAN SNP Missense_Mutation 7 100363155 A C 6 59 BRCA TCGA-A8-A085 POM121 DNP Missense_Mutation 7 72412672 TC CT 62 44 BRCA TCGA-A8-A085 CDK14 SNP Silent 7 90377007 C T 21 54 BRCA TCGA-A8-A085 PKHD1L1 SNP Missense_Mutation 8 110503282 G C 33 74 BRCA TCGA-A8-A085 PIWIL2 DEL Frame_Shift_Del 8 22173773 ATCGGGATGGATGTTT - 12 72 BRCA TCGA-A8-A085 SNAI2 DEL Frame_Shift_Del 8 49832526 CAAGGTAATGTGTGGGT - 17 97 BRCA TCGA-A8-A085 OR13C2 SNP Missense_Mutation 9 107367295 A C 5 69 BRCA TCGA-A8-A085 WDR5 SNP Missense_Mutation 9 137005925 C T 25 92 BRCA TCGA-A8-A085 FREM1 SNP Missense_Mutation 9 14801748 C T 24 60 BRCA TCGA-A8-A085 ACER2 SNP Missense_Mutation 9 19423945 A G 14 91 BRCA TCGA-A8-A085 KIAA0020 SNP Missense_Mutation 9 2824721 G T 43 98 BRCA TCGA-A8-A085 PRUNE2 SNP Missense_Mutation 9 79324701 T A 58 64 BRCA TCGA-A8-A086 UBIAD1 SNP Missense_Mutation 1 11333899 A C 14 87 BRCA TCGA-A8-A086 UBR4 SNP Silent 1 19426948 C T 27 32 BRCA TCGA-A8-A086 SLC41A1 SNP Missense_Mutation 1 205764571 G A 39 81 BRCA TCGA-A8-A086 DFFB SNP Missense_Mutation 1 3782540 G A 42 57 BRCA TCGA-A8-A086 TARBP2 DEL Frame_Shift_Del 12 53899836 TG - 55 34 BRCA TCGA-A8-A086 PLXNC1 SNP Missense_Mutation 12 94620410 C T 27 78 BRCA TCGA-A8-A086 NQO1 SNP Missense_Mutation 16 69744912 G C 41 51 BRCA TCGA-A8-A086 POLR1B SNP Silent 2 113333168 C T 21 62 BRCA TCGA-A8-A086 UBASH3A SNP Missense_Mutation 21 43833311 C T 19 70 BRCA TCGA-A8-A086 SBF1 DEL Frame_Shift_Del 22 50899119 T - 54 74 BRCA TCGA-A8-A086 SLC6A11 SNP Missense_Mutation 3 10967723 C T 27 100 BRCA TCGA-A8-A086 TMCC1 SNP Missense_Mutation 3 129546835 C A 24 48 BRCA TCGA-A8-A086 SH3TC1 SNP Silent 4 8242514 G A 38 33 BRCA TCGA-A8-A086 WDR36 SNP Silent 5 110462515 C A 22 52 BRCA TCGA-A8-A086 MAP3K1 DEL Frame_Shift_Del 5 56177874 AG - 7 46 BRCA TCGA-A8-A086 LYSMD3 DEL Frame_Shift_Del 5 89815283 CT - 20 98 BRCA TCGA-A8-A086 ATF6B SNP Silent 6 32088603 T C 54 55 BRCA TCGA-A8-A08A PIP5K1A DEL Frame_Shift_Del 1 151204807 G - 39 99 BRCA TCGA-A8-A08A RTKN2 SNP Missense_Mutation 10 63964752 A T 8 53 BRCA TCGA-A8-A08A FAM160A2 SNP Missense_Mutation 11 6232932 C T 23 69 BRCA TCGA-A8-A08A FMNL3 SNP Missense_Mutation 12 50052270 G A 43 72 BRCA TCGA-A8-A08A FOXA1 SNP Missense_Mutation 14 38061222 T A 60 85 BRCA TCGA-A8-A08A THBS1 INS Frame_Shift_Ins 15 39883401 - CA 30 100 BRCA TCGA-A8-A08A PLA2G4E SNP Silent 15 42284983 G A 35 60 BRCA TCGA-A8-A08A HERC1 SNP Missense_Mutation 15 63944671 C T 19 80 BRCA TCGA-A8-A08A GTF3C1 SNP Silent 16 27506805 G A 36 79 BRCA TCGA-A8-A08A ABCA8 SNP Missense_Mutation 17 66925817 C A 18 52 BRCA TCGA-A8-A08A CTC1 SNP Missense_Mutation 17 8141861 C G 21 67 BRCA TCGA-A8-A08A FCHO1 DEL In_Frame_Del 19 17881246 GTG - 36 72 BRCA TCGA-A8-A08A ERBB4 SNP Missense_Mutation 2 212248393 G A 42 73 BRCA TCGA-A8-A08A ZNF142 SNP Missense_Mutation 2 219514141 T C 49 71 BRCA TCGA-A8-A08A VSIG1 SNP Missense_Mutation 23 107320387 A G 14 47 BRCA TCGA-A8-A08A UPF3B SNP Silent 23 118986832 G A 39 45 BRCA TCGA-A8-A08A BMX SNP Nonsense_Mutation 23 15540601 C T 25 54 BRCA TCGA-A8-A08A FAM123B SNP Missense_Mutation 23 63411447 G A 37 59 BRCA TCGA-A8-A08A MED12 SNP Missense_Mutation 23 70340011 C T 22 94 BRCA TCGA-A8-A08A C4orf6 SNP Silent 4 5528055 A G 4 51 BRCA TCGA-A8-A08A UNC5C SNP Missense_Mutation 4 96141217 G A 37 78 BRCA TCGA-A8-A08A FAT2 SNP Silent 5 150948304 C T 23 14 BRCA TCGA-A8-A08A TMEM161B SNP Missense_Mutation 5 87494931 C A 18 99 BRCA TCGA-A8-A08A LPA SNP Missense_Mutation 6 161007564 G A 40 44 BRCA TCGA-A8-A08A GTF2IRD1 SNP Silent 7 73961494 G A 39 36 BRCA TCGA-A8-A08A PSIP1 DEL In_Frame_Del 9 15474030 CTT - 24 82 BRCA TCGA-A8-A08B RC3H1 SNP Missense_Mutation 1 173939653 C T 30 88 BRCA TCGA-A8-A08B DISP1 SNP Missense_Mutation 1 223177609 C T 31 74 BRCA TCGA-A8-A08B VN1R5 SNP Silent 1 247419739 C G 32 52 BRCA TCGA-A8-A08B GBP6 SNP Silent 1 89849788 G A 33 57 BRCA TCGA-A8-A08B SH3PXD2A SNP Nonsense_Mutation 10 105363029 G T 37 55 BRCA TCGA-A8-A08B DCHS1 SNP Missense_Mutation 11 6645418 G A 43 74 BRCA TCGA-A8-A08B OR10A3 SNP Silent 11 7960264 G A 39 51 BRCA TCGA-A8-A08B ACVR1B SNP Silent 12 52370172 C T 31 50 BRCA TCGA-A8-A08B ZDHHC17 SNP Missense_Mutation 12 77199150 G A 39 99 BRCA TCGA-A8-A08B BRCA2 DEL In_Frame_Del 13 32912296 TGT - 55 55 BRCA TCGA-A8-A08B PTGDR SNP Silent 14 52741544 G C 45 51 BRCA TCGA-A8-A08B HERC1 SNP Missense_Mutation 15 63958635 G A 35 100 BRCA TCGA-A8-A08B BNC1 SNP Missense_Mutation 15 83932783 G A 42 100 BRCA TCGA-A8-A08B TBC1D3B SNP Silent 17 34493597 C T 32 51 BRCA TCGA-A8-A08B ACLY SNP Missense_Mutation 17 40070020 G C 35 86 BRCA TCGA-A8-A08B ACLY SNP Nonsense_Mutation 17 40070051 G A 47 100 BRCA TCGA-A8-A08B BCL6B SNP Missense_Mutation 17 6929853 G T 41 59 BRCA TCGA-A8-A08B C17orf74 SNP Missense_Mutation 17 7329044 T G 63 68 BRCA TCGA-A8-A08B ALPK2 SNP Missense_Mutation 18 56191061 A C 7 83 BRCA TCGA-A8-A08B PPAN-P2RY11 SNP Missense_Mutation 19 10224677 G T 43 95 BRCA TCGA-A8-A08B IL27RA SNP Missense_Mutation 19 14143204 C G 26 51 BRCA TCGA-A8-A08B ZSCAN5C SNP Silent 19 56720191 A G 15 23 BRCA TCGA-A8-A08B FOXD4L1 SNP Silent 2 114257943 A G 7 50 BRCA TCGA-A8-A08B RAPGEF4 INS Frame_Shift_Ins 2 173900899 - G 55 90 BRCA TCGA-A8-A08B SPEG SNP Missense_Mutation 2 220354586 C T 32 63 BRCA TCGA-A8-A08B ABCG8 SNP Silent 2 44101595 C T 17 57 BRCA TCGA-A8-A08B AHCY SNP Silent 20 32878392 G A 45 52 BRCA TCGA-A8-A08B LRRC3 SNP Silent 21 45877292 G A 39 32 BRCA TCGA-A8-A08B AP1B1 SNP Missense_Mutation 22 29727482 G A 44 67 BRCA TCGA-A8-A08B FLNA SNP Missense_Mutation 23 153593204 C T 31 78 BRCA TCGA-A8-A08B P2RY4 SNP Missense_Mutation 23 69479051 G A 37 51 BRCA TCGA-A8-A08B ZBBX SNP Splice_site 3 167000281 G A 45 49 BRCA TCGA-A8-A08B PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-A8-A08B FYCO1 SNP Silent 3 46008081 C T 29 60 BRCA TCGA-A8-A08B PFKFB4 SNP Splice_site 3 48572945 C T 23 57 BRCA TCGA-A8-A08B FLNB SNP Silent 3 58109209 G A 39 24 BRCA TCGA-A8-A08B TRPC3 SNP Silent 4 122853579 G A 40 50 BRCA TCGA-A8-A08B GPR125 SNP Missense_Mutation 4 22440036 T A 60 90 BRCA TCGA-A8-A08B SEL1L3 SNP Missense_Mutation 4 25848951 C T 23 49 BRCA TCGA-A8-A08B UGT2B7 SNP Silent 4 69973882 C T 32 58 BRCA TCGA-A8-A08B PDZD2 SNP Silent 5 32088972 T C 49 49 BRCA TCGA-A8-A08B MED23 SNP Nonsense_Mutation 6 131908938 G A 37 84 BRCA TCGA-A8-A08B AKAP9 SNP Silent 7 91652213 C G 29 45 BRCA TCGA-A8-A08B COL14A1 SNP Silent 8 121240977 A G 5 35 BRCA TCGA-A8-A08B CSMD1 SNP Silent 8 2910135 G A 40 43 BRCA TCGA-A8-A08F VCAM1 SNP Missense_Mutation 1 101200206 A T 4 50 BRCA TCGA-A8-A08F SORT1 SNP Silent 1 109878931 T C 54 59 BRCA TCGA-A8-A08F INTS3 SNP Silent 1 153735214 G A 35 51 BRCA TCGA-A8-A08F TRIM46 DEL Frame_Shift_Del 1 155150988 C - 26 65 BRCA TCGA-A8-A08F SPTA1 SNP Missense_Mutation 1 158624423 G A 40 72 BRCA TCGA-A8-A08F SLAMF7 SNP Missense_Mutation 1 160722907 C G 22 49 BRCA TCGA-A8-A08F LY9 SNP Missense_Mutation 1 160769678 T C 56 58 BRCA TCGA-A8-A08F B4GALT3 INS Frame_Shift_Ins 1 161144898 - T 48 83 BRCA TCGA-A8-A08F ALDH9A1 SNP Missense_Mutation 1 165652328 G A 34 94 BRCA TCGA-A8-A08F PADI3 SNP Missense_Mutation 1 17606863 C T 18 73 BRCA TCGA-A8-A08F HMCN1 SNP Missense_Mutation 1 185902893 T A 57 89 BRCA TCGA-A8-A08F CFH SNP Missense_Mutation 1 196643085 A T 13 45 BRCA TCGA-A8-A08F IPO9 SNP Missense_Mutation 1 201822199 A G 12 86 BRCA TCGA-A8-A08F USH2A SNP Missense_Mutation 1 215848460 C A 24 77 BRCA TCGA-A8-A08F LIN9 SNP Missense_Mutation 1 226474154 A C 3 90 BRCA TCGA-A8-A08F AGT SNP Missense_Mutation 1 230846340 T A 58 61 BRCA TCGA-A8-A08F DISC1 SNP Missense_Mutation 1 232144788 A C 7 53 BRCA TCGA-A8-A08F OR2G3 SNP Missense_Mutation 1 247768952 G T 40 40 BRCA TCGA-A8-A08F TRIM58 SNP Missense_Mutation 1 248039569 T G 64 42 BRCA TCGA-A8-A08F OR2T10 SNP Silent 1 248756770 C T 32 56 BRCA TCGA-A8-A08F FBXW4 SNP Nonsense_Mutation 10 103427732 C T 26 91 BRCA TCGA-A8-A08F PTPRE SNP Silent 10 129871639 G A 42 45 BRCA TCGA-A8-A08F HNRNPF DEL Frame_Shift_Del 10 43882166 G - 48 54 BRCA TCGA-A8-A08F HNRNPA3P1 SNP Missense_Mutation 10 44285720 A T 4 77 BRCA TCGA-A8-A08F ERCC6 SNP Missense_Mutation 10 50679156 T C 63 93 BRCA TCGA-A8-A08F PCDH15 SNP Missense_Mutation 10 55582048 G T 47 72 BRCA TCGA-A8-A08F SAMD8 SNP Missense_Mutation 10 76928307 T G 56 92 BRCA TCGA-A8-A08F NRG3 SNP Missense_Mutation 10 84744963 G C 43 70 BRCA TCGA-A8-A08F LRIT1 SNP Missense_Mutation 10 85992189 T C 59 56 BRCA TCGA-A8-A08F DRD2 SNP Missense_Mutation 11 113295308 G T 45 62 BRCA TCGA-A8-A08F TMEM132A SNP Missense_Mutation 11 60697989 G A 44 82 BRCA TCGA-A8-A08F BEST1 SNP Silent 11 61729922 C A 21 61 BRCA TCGA-A8-A08F NRXN2 SNP Missense_Mutation 11 64417968 G C 39 68 BRCA TCGA-A8-A08F OR10A2 SNP Missense_Mutation 11 6891464 A C 3 50 BRCA TCGA-A8-A08F NLRP10 SNP Silent 11 7982712 A T 7 49 BRCA TCGA-A8-A08F C12orf71 SNP Missense_Mutation 12 27234161 G C 48 44 BRCA TCGA-A8-A08F OVCH1 SNP Missense_Mutation 12 29629184 C G 29 55 BRCA TCGA-A8-A08F OR6C6 SNP Missense_Mutation 12 55688554 A T 4 56 BRCA TCGA-A8-A08F DNAJC14 SNP Missense_Mutation 12 56221251 A G 7 63 BRCA TCGA-A8-A08F B4GALNT1 SNP Silent 12 58022574 C T 21 57 BRCA TCGA-A8-A08F VWF SNP Missense_Mutation 12 6125930 T A 56 47 BRCA TCGA-A8-A08F SYT1 SNP Silent 12 79842793 G A 39 48 BRCA TCGA-A8-A08F FLT3 SNP Missense_Mutation 13 28578204 C A 24 49 BRCA TCGA-A8-A08F ADAM6 SNP Splice_Site 14 106725835 G A 36 40 BRCA TCGA-A8-A08F MYH6 SNP Missense_Mutation 14 23873939 T C 58 83 BRCA TCGA-A8-A08F NYNRIN SNP Missense_Mutation 14 24877941 A T 2 52 BRCA TCGA-A8-A08F NRXN3 SNP Missense_Mutation 14 79111656 G T 47 58 BRCA TCGA-A8-A08F C15orf63 SNP Silent 15 44093968 C A 25 58 BRCA TCGA-A8-A08F FBN1 SNP Missense_Mutation 15 48729188 C A 21 100 BRCA TCGA-A8-A08F CEP152 SNP Missense_Mutation 15 49054845 G C 34 51 BRCA TCGA-A8-A08F ZNF280D SNP Silent 15 56959161 T A 58 60 BRCA TCGA-A8-A08F CGNL1 DEL Frame_Shift_Del 15 57730935 A - 11 41 BRCA TCGA-A8-A08F TPM1 SNP Missense_Mutation 15 63351850 G C 46 100 BRCA TCGA-A8-A08F SV2B SNP Missense_Mutation 15 91809865 T A 60 52 BRCA TCGA-A8-A08F SNX29 SNP Missense_Mutation 16 12172727 A C 11 61 BRCA TCGA-A8-A08F ZSCAN10 SNP Missense_Mutation 16 3142213 C A 25 49 BRCA TCGA-A8-A08F LONP2 SNP Missense_Mutation 16 48290613 G C 45 54 BRCA TCGA-A8-A08F LONP2 SNP Missense_Mutation 16 48290627 G C 37 81 BRCA TCGA-A8-A08F NF1 DEL Frame_Shift_Del 17 29684294 TGGTAAAATATACCACAGATGAGTTTGA - 55 73 BRCA TCGA-A8-A08F PNPO SNP Missense_Mutation 17 46022006 G T 48 97 BRCA TCGA-A8-A08F PPM1D SNP Silent 17 58734121 G C 45 49 BRCA TCGA-A8-A08F COG1 SNP Missense_Mutation 17 71201755 C A 24 75 BRCA TCGA-A8-A08F LAMA3 SNP Missense_Mutation 18 21364028 G A 45 74 BRCA TCGA-A8-A08F ALPK2 SNP Missense_Mutation 18 56182234 T C 62 90 BRCA TCGA-A8-A08F CDH20 SNP Missense_Mutation 18 59195238 G T 35 54 BRCA TCGA-A8-A08F EMR3 SNP Missense_Mutation 19 14749046 G A 48 52 BRCA TCGA-A8-A08F CYP4F22 SNP Missense_Mutation 19 15662166 C G 28 66 BRCA TCGA-A8-A08F GPATCH1 SNP Silent 19 33602715 G A 48 41 BRCA TCGA-A8-A08F SIGLEC11 SNP Missense_Mutation 19 50463606 A C 6 52 BRCA TCGA-A8-A08F KLK3 SNP Missense_Mutation 19 51361847 G A 46 73 BRCA TCGA-A8-A08F CEACAM18 SNP Missense_Mutation 19 51986595 C T 26 50 BRCA TCGA-A8-A08F ZNF534 SNP Missense_Mutation 19 52942384 G T 35 51 BRCA TCGA-A8-A08F ZNF470 SNP Silent 19 57089279 G A 38 45 BRCA TCGA-A8-A08F TTN SNP Missense_Mutation 2 179396767 G A 39 67 BRCA TCGA-A8-A08F MAP2 SNP Missense_Mutation 2 210559236 A T 5 59 BRCA TCGA-A8-A08F CPS1 SNP Missense_Mutation 2 211525277 C A 29 70 BRCA TCGA-A8-A08F ASB18 SNP Missense_Mutation 2 237150049 C T 27 50 BRCA TCGA-A8-A08F ASXL2 SNP Nonsense_Mutation 2 25967090 C A 29 71 BRCA TCGA-A8-A08F REL SNP Silent 2 61145426 G A 33 71 BRCA TCGA-A8-A08F APLF SNP Silent 2 68740326 A T 15 57 BRCA TCGA-A8-A08F ADD2 SNP Silent 2 70906010 C T 23 25 BRCA TCGA-A8-A08F LRRTM1 SNP Missense_Mutation 2 80530777 G T 44 68 BRCA TCGA-A8-A08F RGPD2 SNP Missense_Mutation 2 88082418 C A 32 55 BRCA TCGA-A8-A08F ANKRD36C SNP Missense_Mutation 2 96521618 A G 8 50 BRCA TCGA-A8-A08F PXMP4 SNP Missense_Mutation 20 32302531 T C 64 91 BRCA TCGA-A8-A08F GRAP2 SNP Missense_Mutation 22 40366922 C G 26 63 BRCA TCGA-A8-A08F ATP1B4 SNP Splice_site 23 119513487 T G 61 82 BRCA TCGA-A8-A08F GABRQ SNP Missense_Mutation 23 151815563 A T 8 72 BRCA TCGA-A8-A08F SNP Missense_Mutation 23 155252758 A G 7 62 BRCA TCGA-A8-A08F MORC1 SNP Missense_Mutation 3 108724000 A C 10 53 BRCA TCGA-A8-A08F PLA1A DEL Frame_Shift_Del 3 119344029 CGAGGTTACCTTC - 31 50 BRCA TCGA-A8-A08F TXNRD3NB SNP Silent 3 126291351 C A 23 47 BRCA TCGA-A8-A08F FGD5 SNP Silent 3 14861793 C T 23 37 BRCA TCGA-A8-A08F SAMD7 SNP Silent 3 169644854 T C 53 42 BRCA TCGA-A8-A08F KLHL24 SNP Missense_Mutation 3 183382765 A G 12 79 BRCA TCGA-A8-A08F SCN10A SNP Silent 3 38753808 G A 45 70 BRCA TCGA-A8-A08F ALS2CL SNP Missense_Mutation 3 46716125 T C 57 83 BRCA TCGA-A8-A08F NBEAL2 SNP Missense_Mutation 3 47041682 G C 48 54 BRCA TCGA-A8-A08F RBM15B SNP Missense_Mutation 3 51431037 C G 32 53 BRCA TCGA-A8-A08F FLNB SNP Missense_Mutation 3 58094278 C T 30 77 BRCA TCGA-A8-A08F MINA DEL In_Frame_Del 3 97664033 CTACTTGAATTAAACATT - 20 48 BRCA TCGA-A8-A08F ATP8A1 SNP Splice_Site 4 42425633 C T 17 83 BRCA TCGA-A8-A08F LNX1 SNP Missense_Mutation 4 54364974 T C 62 86 BRCA TCGA-A8-A08F USO1 SNP Missense_Mutation 4 76731634 A G 1 55 BRCA TCGA-A8-A08F PCDHA8 SNP Nonsense_Mutation 5 140222344 C T 27 45 BRCA TCGA-A8-A08F PCDHA11 SNP Missense_Mutation 5 140248908 C A 24 67 BRCA TCGA-A8-A08F PCDHB11 SNP Missense_Mutation 5 140580947 A G 6 42 BRCA TCGA-A8-A08F PCDHB11 SNP Nonsense_Mutation 5 140581715 C T 31 39 BRCA TCGA-A8-A08F PCDHGA12 SNP Missense_Mutation 5 140812092 C A 18 82 BRCA TCGA-A8-A08F FAM114A2 SNP Missense_Mutation 5 153413878 C A 20 57 BRCA TCGA-A8-A08F PPP1R2P3 SNP Missense_Mutation 5 156277602 C T 22 53 BRCA TCGA-A8-A08F ZNF454 SNP Missense_Mutation 5 178392207 G A 47 92 BRCA TCGA-A8-A08F CARD6 SNP Silent 5 40854020 A T 7 47 BRCA TCGA-A8-A08F HSPB3 SNP Missense_Mutation 5 53751815 G C 33 64 BRCA TCGA-A8-A08F HSPB3 SNP Missense_Mutation 5 53751835 G C 33 60 BRCA TCGA-A8-A08F CDC20B SNP Missense_Mutation 5 54442678 C G 31 53 BRCA TCGA-A8-A08F KIAA0947 DEL In_Frame_Del 5 5466609 AAA - 13 83 BRCA TCGA-A8-A08F HSF2 DEL Frame_Shift_Del 6 122741312 AGAAGAACCTGTTT - 3 80 BRCA TCGA-A8-A08F OR12D3 SNP Missense_Mutation 6 29342676 T A 57 87 BRCA TCGA-A8-A08F LRFN2 SNP Missense_Mutation 6 40400435 C T 27 65 BRCA TCGA-A8-A08F SERPINE1 SNP Missense_Mutation 7 100773837 T C 62 69 BRCA TCGA-A8-A08F ELN SNP Missense_Mutation 7 73457331 G A 48 46 BRCA TCGA-A8-A08F CCDC146 SNP Missense_Mutation 7 76866317 G C 36 65 BRCA TCGA-A8-A08F SAMD9L SNP Missense_Mutation 7 92763853 T C 60 49 BRCA TCGA-A8-A08F FZD6 SNP Missense_Mutation 8 104337129 G C 33 49 BRCA TCGA-A8-A08F TG SNP Missense_Mutation 8 133919044 G T 46 77 BRCA TCGA-A8-A08F CSMD1 SNP Missense_Mutation 8 3046501 C G 24 100 BRCA TCGA-A8-A08F THAP1 SNP Missense_Mutation 8 42693459 T C 59 34 BRCA TCGA-A8-A08F NECAB1 SNP Missense_Mutation 8 91929817 G A 48 95 BRCA TCGA-A8-A08F GARNL3 SNP Splice_site 9 130111314 G A 47 97 BRCA TCGA-A8-A08F ZMYND19 SNP Missense_Mutation 9 140477613 T C 54 85 BRCA TCGA-A8-A08F FREM1 SNP Silent 9 14769772 G A 39 54 BRCA TCGA-A8-A08F CNTNAP3 SNP Silent 9 39100104 C T 18 45 BRCA TCGA-A8-A08F KIAA1432 SNP Missense_Mutation 9 5763843 C T 28 99 BRCA TCGA-A8-A08G OR10R2 SNP Missense_Mutation 1 158449837 T C 58 51 BRCA TCGA-A8-A08G CENPF SNP Missense_Mutation 1 214813560 G A 37 93 BRCA TCGA-A8-A08G TARBP1 SNP Silent 1 234563083 C T 23 51 BRCA TCGA-A8-A08G CHRM3 SNP Missense_Mutation 1 240071679 C T 23 58 BRCA TCGA-A8-A08G CCDC30 SNP Nonsense_Mutation 1 43108213 G T 41 60 BRCA TCGA-A8-A08G GATA3 INS Frame_Shift_Ins 10 8115851 - ATGTCCT 17 78 BRCA TCGA-A8-A08G PLCE1 SNP Missense_Mutation 10 96014009 G T 36 54 BRCA TCGA-A8-A08G SLC22A18 SNP Splice_site 11 2946426 G A 45 78 BRCA TCGA-A8-A08G MRPL11 SNP Missense_Mutation 11 66204842 C G 29 80 BRCA TCGA-A8-A08G PRICKLE1 SNP Missense_Mutation 12 42859031 C T 23 100 BRCA TCGA-A8-A08G ZDHHC17 SNP Silent 12 77199202 C T 17 65 BRCA TCGA-A8-A08G A2M SNP Nonsense_Mutation 12 9251298 G A 38 50 BRCA TCGA-A8-A08G WBP4 SNP Silent 13 41656885 A G 16 47 BRCA TCGA-A8-A08G FRMD5 SNP Missense_Mutation 15 44166630 G T 41 96 BRCA TCGA-A8-A08G PRTG SNP Missense_Mutation 15 55972757 T A 51 87 BRCA TCGA-A8-A08G AGBL1 SNP Missense_Mutation 15 86822937 T G 56 90 BRCA TCGA-A8-A08G SPECC1 SNP Splice_Site 17 20156817 G A 33 74 BRCA TCGA-A8-A08G HNF1B SNP Missense_Mutation 17 36091721 T C 55 58 BRCA TCGA-A8-A08G RNF213 SNP Silent 17 78320721 G A 38 9 BRCA TCGA-A8-A08G RYR1 SNP Missense_Mutation 19 39008172 C T 27 67 BRCA TCGA-A8-A08G C19orf63 SNP Missense_Mutation 19 50984220 T C 56 86 BRCA TCGA-A8-A08G SIGLEC10 SNP Nonsense_Mutation 19 51918504 C A 24 73 BRCA TCGA-A8-A08G NLRP5 SNP Missense_Mutation 19 56549506 G T 36 25 BRCA TCGA-A8-A08G ZNF805 SNP Missense_Mutation 19 57764473 A G 14 51 BRCA TCGA-A8-A08G DHRS9 SNP Missense_Mutation 2 169938396 G A 43 78 BRCA TCGA-A8-A08G SPEG SNP Missense_Mutation 2 220354339 G A 40 51 BRCA TCGA-A8-A08G IQCA1 SNP Missense_Mutation 2 237374203 C T 19 50 BRCA TCGA-A8-A08G NRXN1 SNP Missense_Mutation 2 50149131 T C 64 92 BRCA TCGA-A8-A08G SEMG1 SNP Nonsense_Mutation 20 43837007 C T 19 42 BRCA TCGA-A8-A08G BCAS1 SNP Missense_Mutation 20 52645062 A T 3 74 BRCA TCGA-A8-A08G TMEM45A SNP Missense_Mutation 3 100274101 A T 16 37 BRCA TCGA-A8-A08G ZNF454 SNP Missense_Mutation 5 178392799 A G 9 85 BRCA TCGA-A8-A08G GRIK2 SNP Missense_Mutation 6 102337592 G C 45 100 BRCA TCGA-A8-A08G EPB41L2 SNP Silent 6 131222182 G A 37 50 BRCA TCGA-A8-A08G RBM24 SNP Missense_Mutation 6 17292294 G A 38 68 BRCA TCGA-A8-A08G SERPINB9 SNP Missense_Mutation 6 2895662 C A 30 54 BRCA TCGA-A8-A08G SERPINB9 SNP Missense_Mutation 6 2895673 C T 32 92 BRCA TCGA-A8-A08G DNAH8 SNP Silent 6 38840839 C T 31 48 BRCA TCGA-A8-A08G POLR1C SNP Silent 6 43488439 C G 23 36 BRCA TCGA-A8-A08G SRRT SNP Silent 7 100482032 C T 30 60 BRCA TCGA-A8-A08G KLHL7 SNP Silent 7 23212573 T G 55 55 BRCA TCGA-A8-A08G KCNB2 SNP Missense_Mutation 8 73848282 G A 38 56 BRCA TCGA-A8-A08H FAM63A SNP Missense_Mutation 1 150970104 A T 7 54 BRCA TCGA-A8-A08H FAM63A SNP Silent 1 150970106 T C 59 18 BRCA TCGA-A8-A08H FLG2 SNP Silent 1 152325327 T G 63 45 BRCA TCGA-A8-A08H CD5L SNP Nonsense_Mutation 1 157803094 C T 26 73 BRCA TCGA-A8-A08H DDR2 SNP Silent 1 162745571 C T 29 69 BRCA TCGA-A8-A08H KIF26B DEL Frame_Shift_Del 1 245582913 G - 35 51 BRCA TCGA-A8-A08H FAM167B SNP Missense_Mutation 1 32713099 C T 32 68 BRCA TCGA-A8-A08H FGGY SNP Silent 1 60103948 G A 33 74 BRCA TCGA-A8-A08H ZBTB48 DEL Frame_Shift_Del 1 6649225 C - 26 75 BRCA TCGA-A8-A08H IDI2 SNP Missense_Mutation 10 1065651 C T 30 87 BRCA TCGA-A8-A08H IDI2 SNP Silent 10 1065658 C T 29 48 BRCA TCGA-A8-A08H MKI67 SNP Missense_Mutation 10 129914073 G A 33 51 BRCA TCGA-A8-A08H DSCAML1 SNP Missense_Mutation 11 117389208 C T 29 96 BRCA TCGA-A8-A08H DSCAML1 SNP Silent 11 117389218 C T 21 79 BRCA TCGA-A8-A08H LRP4 SNP Silent 11 46924401 G A 46 55 BRCA TCGA-A8-A08H AHNAK SNP Missense_Mutation 11 62300799 C T 29 50 BRCA TCGA-A8-A08H MYBPC1 SNP Silent 12 102040637 G A 33 58 BRCA TCGA-A8-A08H CUX2 SNP Missense_Mutation 12 111746104 G A 45 94 BRCA TCGA-A8-A08H CCDC62 SNP Missense_Mutation 12 123270281 C T 32 67 BRCA TCGA-A8-A08H CCDC62 SNP Silent 12 123270283 C T 29 67 BRCA TCGA-A8-A08H CCDC38 SNP Silent 12 96292198 C T 29 31 BRCA TCGA-A8-A08H CCDC38 SNP Missense_Mutation 12 96292210 C T 29 52 BRCA TCGA-A8-A08H TSC22D1 SNP Missense_Mutation 13 45150014 G A 39 73 BRCA TCGA-A8-A08H MYH7 SNP Splice_site 14 23884206 G A 47 100 BRCA TCGA-A8-A08H NFATC4 SNP Missense_Mutation 14 24842944 G A 45 94 BRCA TCGA-A8-A08H KIAA0586 SNP Splice_site 14 59014649 G A 45 60 BRCA TCGA-A8-A08H ZFYVE26 SNP Missense_Mutation 14 68229469 C T 30 71 BRCA TCGA-A8-A08H BAHD1 SNP Missense_Mutation 15 40750982 G A 45 65 BRCA TCGA-A8-A08H FBN1 SNP Missense_Mutation 15 48936868 G T 40 52 BRCA TCGA-A8-A08H ZNF592 SNP Missense_Mutation 15 85334030 A T 11 89 BRCA TCGA-A8-A08H MEFV SNP Missense_Mutation 16 3304386 G C 42 49 BRCA TCGA-A8-A08H MEFV DEL Frame_Shift_Del 16 3304392 A - 6 40 BRCA TCGA-A8-A08H ADCY9 INS Frame_Shift_Ins 16 4164238 - C 34 50 BRCA TCGA-A8-A08H SLC12A4 INS Frame_Shift_Ins 16 67979728 - CG 8 92 BRCA TCGA-A8-A08H RAI1 SNP Missense_Mutation 17 17700386 C T 21 61 BRCA TCGA-A8-A08H GRB7 SNP Silent 17 37898918 G A 43 52 BRCA TCGA-A8-A08H WNK4 SNP Missense_Mutation 17 40939494 G A 45 96 BRCA TCGA-A8-A08H WNK4 SNP Silent 17 40939514 G A 34 69 BRCA TCGA-A8-A08H WNK4 SNP Missense_Mutation 17 40947892 G C 43 63 BRCA TCGA-A8-A08H NMT1 SNP Missense_Mutation 17 43163979 G A 37 100 BRCA TCGA-A8-A08H SRP68 SNP Missense_Mutation 17 74068439 G A 37 59 BRCA TCGA-A8-A08H ARHGEF15 SNP Missense_Mutation 17 8218509 C T 31 68 BRCA TCGA-A8-A08H MAST1 SNP Missense_Mutation 19 12979921 C A 30 94 BRCA TCGA-A8-A08H TMEM59L SNP Missense_Mutation 19 18726815 C G 24 49 BRCA TCGA-A8-A08H MLL4 SNP Missense_Mutation 19 36216136 G A 33 76 BRCA TCGA-A8-A08H GRWD1 SNP Silent 19 48953638 G A 38 50 BRCA TCGA-A8-A08H ZNRF4 SNP Missense_Mutation 19 5455855 C T 27 79 BRCA TCGA-A8-A08H KLF11 SNP Silent 2 10192628 T G 55 42 BRCA TCGA-A8-A08H COL4A4 SNP Silent 2 227872899 G A 43 39 BRCA TCGA-A8-A08H COL4A4 SNP Missense_Mutation 2 227924177 G A 45 75 BRCA TCGA-A8-A08H C20orf132 SNP Silent 20 35749406 G A 45 60 BRCA TCGA-A8-A08H C20orf132 SNP Missense_Mutation 20 35749414 G A 33 67 BRCA TCGA-A8-A08H TBC1D20 SNP Missense_Mutation 20 422288 G T 36 74 BRCA TCGA-A8-A08H MICAL3 SNP Missense_Mutation 22 18384692 C T 29 100 BRCA TCGA-A8-A08H MICAL3 SNP Missense_Mutation 22 18384698 C T 32 100 BRCA TCGA-A8-A08H ZNF74 SNP Silent 22 20760628 G A 33 58 BRCA TCGA-A8-A08H MCAT SNP Silent 22 43529376 C T 27 31 BRCA TCGA-A8-A08H CD99L2 SNP Splice_site 23 149937508 C T 29 56 BRCA TCGA-A8-A08H SYTL5 DNP Nonsense_Mutation 23 37985868 GG AA 47 97 BRCA TCGA-A8-A08H MAGED2 SNP Missense_Mutation 23 54841170 G A 45 78 BRCA TCGA-A8-A08H SRPX2 DEL Frame_Shift_Del 23 99921786 GG - 39 96 BRCA TCGA-A8-A08H PARP14 SNP Missense_Mutation 3 122420066 G A 45 45 BRCA TCGA-A8-A08H C3orf20 SNP Missense_Mutation 3 14724696 C T 32 77 BRCA TCGA-A8-A08H RBM15B SNP Silent 3 51430439 C T 32 66 BRCA TCGA-A8-A08H ZFYVE28 SNP Missense_Mutation 4 2341340 T A 54 84 BRCA TCGA-A8-A08H DMP1 SNP Missense_Mutation 4 88583319 G A 41 52 BRCA TCGA-A8-A08H APBB3 SNP Silent 5 139938266 T C 54 52 BRCA TCGA-A8-A08H FAT2 SNP Silent 5 150930283 G A 33 63 BRCA TCGA-A8-A08H FAT2 SNP Silent 5 150930286 G A 45 53 BRCA TCGA-A8-A08H MAP3K1 SNP Silent 5 56178411 C T 29 64 BRCA TCGA-A8-A08H ZDHHC11 SNP Silent 5 837564 G A 45 42 BRCA TCGA-A8-A08H SLC17A4 SNP Missense_Mutation 6 25771198 C T 24 42 BRCA TCGA-A8-A08H PIK3CG SNP Missense_Mutation 7 106508216 G A 45 87 BRCA TCGA-A8-A08H ADCK2 SNP Silent 7 140387032 G A 45 43 BRCA TCGA-A8-A08H RNF5P1 SNP Silent 8 38458656 C T 23 35 BRCA TCGA-A8-A08H GOLGA2 SNP Splice_site 9 131030701 G A 45 51 BRCA TCGA-A8-A08H KIAA0649 SNP Silent 9 138379113 G A 48 39 BRCA TCGA-A8-A08H KIAA0649 SNP Missense_Mutation 9 138379127 G A 43 68 BRCA TCGA-A8-A08I MAGI3 SNP Missense_Mutation 1 114191882 G A 48 97 BRCA TCGA-A8-A08I SPTA1 SNP Missense_Mutation 1 158636110 C T 19 56 BRCA TCGA-A8-A08I ATP1A4 SNP Missense_Mutation 1 160144375 G A 40 60 BRCA TCGA-A8-A08I NHLRC2 SNP Missense_Mutation 10 115661613 A T 12 92 BRCA TCGA-A8-A08I PCDH15 SNP Silent 10 55782835 G T 45 49 BRCA TCGA-A8-A08I GUCY1A2 SNP Missense_Mutation 11 106558322 C A 18 95 BRCA TCGA-A8-A08I C11orf1 SNP Missense_Mutation 11 111753281 G A 45 62 BRCA TCGA-A8-A08I ZFPL1 SNP Missense_Mutation 11 64855582 C T 30 66 BRCA TCGA-A8-A08I IFT88 SNP Silent 13 21172876 G A 33 56 BRCA TCGA-A8-A08I MTUS2 SNP Missense_Mutation 13 29600553 C A 22 73 BRCA TCGA-A8-A08I USPL1 SNP Silent 13 31195310 G A 46 90 BRCA TCGA-A8-A08I GPC5 SNP Silent 13 92408591 A C 11 45 BRCA TCGA-A8-A08I TTC6 DEL Frame_Shift_Del 14 38293013 TTTCTGGATGC - 64 73 BRCA TCGA-A8-A08I NEK9 SNP Silent 14 75584015 T C 51 50 BRCA TCGA-A8-A08I FBN1 SNP Silent 15 48719825 C T 24 53 BRCA TCGA-A8-A08I TP53 SNP Missense_Mutation 17 7578442 T C 57 69 BRCA TCGA-A8-A08I WDR45L DEL In_Frame_Del 17 80585138 TCT - 58 86 BRCA TCGA-A8-A08I MYO9B DEL Frame_Shift_Del 19 17313052 C - 30 78 BRCA TCGA-A8-A08I RYR1 SNP Missense_Mutation 19 38976819 C G 28 70 BRCA TCGA-A8-A08I SCN2A SNP Missense_Mutation 2 166152440 G A 33 74 BRCA TCGA-A8-A08I HECW2 SNP Missense_Mutation 2 197081790 C T 23 99 BRCA TCGA-A8-A08I C2CD2 SNP Missense_Mutation 21 43321826 C G 26 95 BRCA TCGA-A8-A08I SAGE1 SNP Missense_Mutation 23 134991157 G A 41 55 BRCA TCGA-A8-A08I HEPH SNP Missense_Mutation 23 65392232 G A 39 94 BRCA TCGA-A8-A08I ABCC5 SNP Silent 3 183685546 C T 21 68 BRCA TCGA-A8-A08I SCN10A SNP Missense_Mutation 3 38739525 G A 40 77 BRCA TCGA-A8-A08I FAM116A SNP Missense_Mutation 3 57616502 A G 3 91 BRCA TCGA-A8-A08I KBTBD8 SNP Missense_Mutation 3 67053690 C T 31 100 BRCA TCGA-A8-A08I FILIP1L SNP Missense_Mutation 3 99569408 T A 62 93 BRCA TCGA-A8-A08I TRMT10A SNP Missense_Mutation 4 100479258 C T 28 87 BRCA TCGA-A8-A08I PCDHAC2 SNP Silent 5 140346876 C T 23 15 BRCA TCGA-A8-A08I CCDC170 SNP Missense_Mutation 6 151859360 G C 33 69 BRCA TCGA-A8-A08I HIST1H2AA SNP Missense_Mutation 6 25726475 A G 11 81 BRCA TCGA-A8-A08I TNFRSF21 SNP Missense_Mutation 6 47202423 C A 18 100 BRCA TCGA-A8-A08I KCNH2 SNP Missense_Mutation 7 150648151 G A 37 92 BRCA TCGA-A8-A08I FAM154A SNP Missense_Mutation 9 18928791 C A 26 51 BRCA TCGA-A8-A08J CLCN6 SNP Missense_Mutation 1 11888625 C G 17 84 BRCA TCGA-A8-A08J NME7 SNP Missense_Mutation 1 169272390 A C 3 65 BRCA TCGA-A8-A08J PHACTR4 SNP Missense_Mutation 1 28802626 G A 37 71 BRCA TCGA-A8-A08J GATA3 INS Frame_Shift_Ins 10 8115926 - C 38 43 BRCA TCGA-A8-A08J ACACB SNP Missense_Mutation 12 109637223 G T 39 86 BRCA TCGA-A8-A08J ZC3H13 SNP Missense_Mutation 13 46544025 C T 32 75 BRCA TCGA-A8-A08J ERN2 SNP Missense_Mutation 16 23713958 C T 30 82 BRCA TCGA-A8-A08J ABCA8 SNP Splice_Site 17 66872768 C A 18 76 BRCA TCGA-A8-A08J SLC16A5 SNP Silent 17 73100132 A C 7 41 BRCA TCGA-A8-A08J NLGN2 SNP Missense_Mutation 17 7318874 C A 22 96 BRCA TCGA-A8-A08J S1PR4 SNP Missense_Mutation 19 3179623 C T 30 75 BRCA TCGA-A8-A08J RASGRP4 SNP Missense_Mutation 19 38911748 G A 39 69 BRCA TCGA-A8-A08J B9D2 SNP Missense_Mutation 19 41863814 T C 63 84 BRCA TCGA-A8-A08J CLASP1 SNP Missense_Mutation 2 122122750 G A 38 64 BRCA TCGA-A8-A08J KBTBD10 SNP Missense_Mutation 2 170367168 G A 45 96 BRCA TCGA-A8-A08J PNPT1 SNP Missense_Mutation 2 55867766 C T 31 80 BRCA TCGA-A8-A08J LBP SNP Missense_Mutation 20 36993284 A G 8 51 BRCA TCGA-A8-A08J ARMCX5 SNP Missense_Mutation 23 101858458 C A 19 41 BRCA TCGA-A8-A08J EDEM1 SNP Missense_Mutation 3 5252828 A G 6 92 BRCA TCGA-A8-A08J LDB2 SNP Missense_Mutation 4 16597474 C T 19 96 BRCA TCGA-A8-A08J THAP9 INS In_Frame_Ins 4 83826044 - GCT 3 59 BRCA TCGA-A8-A08J TBC1D9B SNP Missense_Mutation 5 179305390 G C 41 71 BRCA TCGA-A8-A08J SLC12A9 SNP Missense_Mutation 7 100459398 C A 29 96 BRCA TCGA-A8-A08J DLD SNP Missense_Mutation 7 107556063 A C 5 73 BRCA TCGA-A8-A08J THSD7A SNP Missense_Mutation 7 11675946 C G 22 62 BRCA TCGA-A8-A08J GTF2IRD2B INS Frame_Shift_Ins 7 74554778 - T 48 46 BRCA TCGA-A8-A08J PAPPA SNP Silent 9 119139902 G T 45 59 BRCA TCGA-A8-A08J ZNF658 SNP Silent 9 40773310 C T 32 64 BRCA TCGA-A8-A08L MYBPHL SNP Missense_Mutation 1 109839776 C A 30 88 BRCA TCGA-A8-A08L ANKRD35 SNP Missense_Mutation 1 145562092 G C 33 59 BRCA TCGA-A8-A08L POLR3C SNP Missense_Mutation 1 145594157 C A 28 94 BRCA TCGA-A8-A08L CHD1L SNP Missense_Mutation 1 146757043 C T 27 65 BRCA TCGA-A8-A08L TARS2 SNP Missense_Mutation 1 150471122 C G 32 58 BRCA TCGA-A8-A08L S100A7A SNP Missense_Mutation 1 153391682 A C 3 52 BRCA TCGA-A8-A08L NPR1 SNP Missense_Mutation 1 153659779 G T 43 88 BRCA TCGA-A8-A08L KIRREL SNP Missense_Mutation 1 158058209 C T 24 95 BRCA TCGA-A8-A08L OR10X1 SNP Silent 1 158548883 A C 2 47 BRCA TCGA-A8-A08L ATP1A4 SNP Splice_Site 1 160123015 G T 44 92 BRCA TCGA-A8-A08L CASQ1 SNP Missense_Mutation 1 160165757 C G 18 79 BRCA TCGA-A8-A08L CD244 SNP Missense_Mutation 1 160811287 G T 33 75 BRCA TCGA-A8-A08L ATF6 SNP Missense_Mutation 1 161789606 G C 33 90 BRCA TCGA-A8-A08L HMCN1 SNP Missense_Mutation 1 186024717 A G 2 58 BRCA TCGA-A8-A08L TMCO4 SNP Silent 1 20066416 G A 45 55 BRCA TCGA-A8-A08L SYT2 SNP Missense_Mutation 1 202571101 C G 32 100 BRCA TCGA-A8-A08L CR2 SNP Silent 1 207644373 C G 32 58 BRCA TCGA-A8-A08L KCNK2 DEL Frame_Shift_Del 1 215408280 C - 26 100 BRCA TCGA-A8-A08L KCNK2 SNP Silent 1 215408281 C G 21 65 BRCA TCGA-A8-A08L TCEA3 SNP Missense_Mutation 1 23743853 C A 30 57 BRCA TCGA-A8-A08L RYR2 SNP Missense_Mutation 1 237659960 C T 32 78 BRCA TCGA-A8-A08L RYR2 SNP Missense_Mutation 1 237777665 A G 6 92 BRCA TCGA-A8-A08L RYR2 SNP Missense_Mutation 1 237791164 T C 52 91 BRCA TCGA-A8-A08L CHML SNP Silent 1 241797530 T C 51 45 BRCA TCGA-A8-A08L OR2G3 SNP Missense_Mutation 1 247769389 C A 32 46 BRCA TCGA-A8-A08L GJB3 SNP Missense_Mutation 1 35250839 C T 23 85 BRCA TCGA-A8-A08L SLC6A9 SNP Missense_Mutation 1 44463290 A T 7 80 BRCA TCGA-A8-A08L FAM151A SNP Missense_Mutation 1 55075317 C G 32 39 BRCA TCGA-A8-A08L DAB1 SNP Missense_Mutation 1 57537961 G T 47 100 BRCA TCGA-A8-A08L AK4 SNP Missense_Mutation 1 65656509 G A 45 67 BRCA TCGA-A8-A08L SLC44A5 SNP Missense_Mutation 1 75862283 C G 29 53 BRCA TCGA-A8-A08L CCBL2 SNP Missense_Mutation 1 89430521 C G 24 53 BRCA TCGA-A8-A08L RPAP2 SNP Missense_Mutation 1 92789796 G A 44 53 BRCA TCGA-A8-A08L C10orf120 SNP Silent 10 124457369 T C 61 46 BRCA TCGA-A8-A08L FAM21C SNP Missense_Mutation 10 46265023 G A 45 68 BRCA TCGA-A8-A08L FAM208B SNP Missense_Mutation 10 5789922 C G 32 55 BRCA TCGA-A8-A08L CYP2C18 SNP Nonsense_Mutation 10 96443636 G A 41 61 BRCA TCGA-A8-A08L SPTY2D1 SNP Silent 11 18636180 G T 45 42 BRCA TCGA-A8-A08L SLC5A12 SNP Missense_Mutation 11 26743111 C A 21 100 BRCA TCGA-A8-A08L ARHGAP1 SNP Silent 11 46717591 G A 34 72 BRCA TCGA-A8-A08L ZNF408 SNP Silent 11 46722615 G A 34 58 BRCA TCGA-A8-A08L OR4X2 SNP Missense_Mutation 11 48267160 T A 53 71 BRCA TCGA-A8-A08L OR5W2 SNP Missense_Mutation 11 55681165 T A 56 65 BRCA TCGA-A8-A08L SHANK2 SNP Missense_Mutation 11 70331834 C T 31 100 BRCA TCGA-A8-A08L TCP11L2 SNP Missense_Mutation 12 106704987 C G 30 90 BRCA TCGA-A8-A08L ATXN2 SNP Missense_Mutation 12 111908004 C T 32 97 BRCA TCGA-A8-A08L PRB2 SNP Missense_Mutation 12 11546090 G T 44 63 BRCA TCGA-A8-A08L GYS2 SNP Silent 12 21733378 A G 10 45 BRCA TCGA-A8-A08L C12orf4 DEL Frame_Shift_Del 12 4627964 CTAA - 32 93 BRCA TCGA-A8-A08L RARG SNP Missense_Mutation 12 53607384 C T 22 85 BRCA TCGA-A8-A08L LRP1 SNP Missense_Mutation 12 57573717 C G 24 68 BRCA TCGA-A8-A08L AVIL SNP Missense_Mutation 12 58204166 C G 32 98 BRCA TCGA-A8-A08L C12orf50 SNP Nonsense_Mutation 12 88383052 G C 45 67 BRCA TCGA-A8-A08L FAM155A SNP Silent 13 108518300 G C 33 65 BRCA TCGA-A8-A08L PCID2 SNP Missense_Mutation 13 113849401 C G 31 96 BRCA TCGA-A8-A08L ATP12A SNP Missense_Mutation 13 25274963 C T 18 65 BRCA TCGA-A8-A08L BRCA2 SNP Splice_Site 13 32932067 G A 44 96 BRCA TCGA-A8-A08L ELF1 INS Frame_Shift_Ins 13 41533123 - A 61 40 BRCA TCGA-A8-A08L IPO5 SNP Missense_Mutation 13 98658447 G A 37 100 BRCA TCGA-A8-A08L MYH7 SNP Missense_Mutation 14 23897763 C A 30 97 BRCA TCGA-A8-A08L ADCY4 SNP Missense_Mutation 14 24793371 C A 21 74 BRCA TCGA-A8-A08L RIPK3 SNP Nonsense_Mutation 14 24808754 G A 47 55 BRCA TCGA-A8-A08L ERO1L SNP Missense_Mutation 14 53150583 T C 51 73 BRCA TCGA-A8-A08L PSMC6 SNP Splice_site 14 53187699 C T 19 99 BRCA TCGA-A8-A08L KTN1 SNP Missense_Mutation 14 56085923 G C 33 76 BRCA TCGA-A8-A08L POMT2 SNP Missense_Mutation 14 77769225 G C 45 71 BRCA TCGA-A8-A08L SERPINA1 SNP Nonsense_Mutation 14 94849023 G C 40 30 BRCA TCGA-A8-A08L CLMN SNP Silent 14 95677072 G A 45 57 BRCA TCGA-A8-A08L ALDH1A3 SNP Missense_Mutation 15 101447358 C G 29 68 BRCA TCGA-A8-A08L HERC2 SNP Missense_Mutation 15 28478454 C A 18 96 BRCA TCGA-A8-A08L CILP SNP Missense_Mutation 15 65497689 C G 32 75 BRCA TCGA-A8-A08L MYH11 SNP Missense_Mutation 16 15854467 G T 44 83 BRCA TCGA-A8-A08L NOMO2 SNP Missense_Mutation 16 18549937 G C 41 56 BRCA TCGA-A8-A08L GP2 SNP Silent 16 20329728 C G 30 51 BRCA TCGA-A8-A08L SRRM2 SNP Missense_Mutation 16 2812610 C G 32 86 BRCA TCGA-A8-A08L SRRM2 SNP Missense_Mutation 16 2816258 G C 33 85 BRCA TCGA-A8-A08L SRRM2 SNP Missense_Mutation 16 2816377 A C 2 63 BRCA TCGA-A8-A08L SPN SNP Missense_Mutation 16 29675524 G C 41 58 BRCA TCGA-A8-A08L C16orf93 SNP Missense_Mutation 16 30770365 A T 15 45 BRCA TCGA-A8-A08L ZNF263 SNP Missense_Mutation 16 3336096 G C 35 55 BRCA TCGA-A8-A08L DOK4 SNP Missense_Mutation 16 57507913 G T 48 99 BRCA TCGA-A8-A08L NFAT5 SNP Silent 16 69725789 A T 8 43 BRCA TCGA-A8-A08L ZNF19 SNP Missense_Mutation 16 71512160 G A 47 47 BRCA TCGA-A8-A08L TERF2IP SNP Missense_Mutation 16 75690231 C G 29 45 BRCA TCGA-A8-A08L GRIN2A DEL Frame_Shift_Del 16 9858140 TTTAAAG - 64 48 BRCA TCGA-A8-A08L MYO15A SNP Splice_Site 17 18035765 A T 7 91 BRCA TCGA-A8-A08L NLE1 SNP Missense_Mutation 17 33463426 C G 29 82 BRCA TCGA-A8-A08L ATP2A3 SNP Silent 17 3846793 C T 21 73 BRCA TCGA-A8-A08L KRTAP3-2 SNP Missense_Mutation 17 39155853 A T 3 74 BRCA TCGA-A8-A08L GPATCH8 SNP Missense_Mutation 17 42478549 C T 30 98 BRCA TCGA-A8-A08L KAT7 SNP Missense_Mutation 17 47903439 C T 31 75 BRCA TCGA-A8-A08L DGKE SNP Missense_Mutation 17 54926210 G C 33 98 BRCA TCGA-A8-A08L C17orf47 SNP Silent 17 56620129 C T 29 47 BRCA TCGA-A8-A08L CACNG4 SNP Missense_Mutation 17 65026915 C A 22 77 BRCA TCGA-A8-A08L ABCA8 SNP Missense_Mutation 17 66871764 C T 22 92 BRCA TCGA-A8-A08L ZACN SNP Silent 17 74077791 C T 24 58 BRCA TCGA-A8-A08L TYK2 SNP Missense_Mutation 19 10475330 G C 34 56 BRCA TCGA-A8-A08L ATG4D SNP Missense_Mutation 19 10655730 C A 20 68 BRCA TCGA-A8-A08L ZNF440 SNP Silent 19 11943461 A G 2 51 BRCA TCGA-A8-A08L ZNF625 SNP Silent 19 12256910 C T 21 51 BRCA TCGA-A8-A08L OR10H1 SNP Missense_Mutation 19 15918164 C G 32 58 BRCA TCGA-A8-A08L CEACAM21 SNP Nonsense_Mutation 19 42085717 C T 29 45 BRCA TCGA-A8-A08L ZNF845 SNP Missense_Mutation 19 53855591 G C 45 52 BRCA TCGA-A8-A08L KIR3DL2 SNP Missense_Mutation 19 55378001 G A 41 60 BRCA TCGA-A8-A08L G6PC2 SNP Missense_Mutation 2 169761050 G T 48 84 BRCA TCGA-A8-A08L NEUROD1 SNP Silent 2 182543042 G A 44 59 BRCA TCGA-A8-A08L CALCRL SNP Splice_Site 2 188216646 C A 18 75 BRCA TCGA-A8-A08L MPP4 SNP Silent 2 202557736 C T 29 65 BRCA TCGA-A8-A08L ALS2CR8 SNP Missense_Mutation 2 203848276 G C 33 79 BRCA TCGA-A8-A08L NBEAL1 SNP Missense_Mutation 2 204009564 C T 29 98 BRCA TCGA-A8-A08L PIKFYVE SNP Silent 2 209218801 C T 30 67 BRCA TCGA-A8-A08L ARPC2 SNP Missense_Mutation 2 219103560 G A 41 100 BRCA TCGA-A8-A08L ITSN2 SNP Missense_Mutation 2 24531579 C A 21 83 BRCA TCGA-A8-A08L CCDC164 SNP Missense_Mutation 2 26678039 A C 7 39 BRCA TCGA-A8-A08L RSAD2 SNP Silent 2 7027109 C T 19 50 BRCA TCGA-A8-A08L TMEM127 SNP Missense_Mutation 2 96919811 G C 33 97 BRCA TCGA-A8-A08L NAA20 SNP Missense_Mutation 20 20013817 G C 45 82 BRCA TCGA-A8-A08L BPIFB1 SNP Missense_Mutation 20 31876560 G T 34 53 BRCA TCGA-A8-A08L PREX1 SNP Missense_Mutation 20 47266010 G A 33 58 BRCA TCGA-A8-A08L PLCB4 SNP Missense_Mutation 20 9449256 C T 32 99 BRCA TCGA-A8-A08L HSPA13 SNP Missense_Mutation 21 15745987 C G 20 85 BRCA TCGA-A8-A08L YBEY SNP Missense_Mutation 21 47707027 C T 21 94 BRCA TCGA-A8-A08L GSTT1 SNP Missense_Mutation 22 24384222 C G 30 64 BRCA TCGA-A8-A08L ODZ1 SNP Missense_Mutation 23 123785795 C G 21 62 BRCA TCGA-A8-A08L AFF2 DEL Splice_Site 23 147967517 TTAGAAGAGC - 60 58 BRCA TCGA-A8-A08L DMD SNP Missense_Mutation 23 32482764 T C 56 73 BRCA TCGA-A8-A08L FOXR2 SNP Missense_Mutation 23 55650719 G T 35 62 BRCA TCGA-A8-A08L FOXO4 SNP Missense_Mutation 23 70321379 G A 45 52 BRCA TCGA-A8-A08L ATRX SNP Missense_Mutation 23 76938062 C G 29 56 BRCA TCGA-A8-A08L CCDC80 SNP Missense_Mutation 3 112357028 C A 32 58 BRCA TCGA-A8-A08L TIMMDC1 SNP Missense_Mutation 3 119232527 G A 40 52 BRCA TCGA-A8-A08L PARP14 SNP Silent 3 122418982 G A 35 50 BRCA TCGA-A8-A08L CCDC14 SNP Missense_Mutation 3 123634320 G C 44 53 BRCA TCGA-A8-A08L SEC61A1 SNP Missense_Mutation 3 127779472 C G 25 100 BRCA TCGA-A8-A08L PLXND1 DEL In_Frame_Del 3 129284243 CTCTGTGCG - 20 76 BRCA TCGA-A8-A08L TRIM42 SNP Missense_Mutation 3 140401484 G C 33 48 BRCA TCGA-A8-A08L XRN1 SNP Missense_Mutation 3 142139962 C A 30 98 BRCA TCGA-A8-A08L SSR3 SNP Silent 3 156260995 T C 52 53 BRCA TCGA-A8-A08L RARRES1 SNP Missense_Mutation 3 158422690 G C 33 64 BRCA TCGA-A8-A08L TNFSF10 SNP Silent 3 172241142 G A 42 34 BRCA TCGA-A8-A08L PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A08L MFN1 SNP Missense_Mutation 3 179066656 C G 32 91 BRCA TCGA-A8-A08L ECE2 SNP Missense_Mutation 3 184003335 G T 36 72 BRCA TCGA-A8-A08L TFRC SNP Silent 3 195802199 G A 45 50 BRCA TCGA-A8-A08L LRRN1 SNP Missense_Mutation 3 3887067 G C 45 87 BRCA TCGA-A8-A08L NME6 SNP Missense_Mutation 3 48336135 G C 44 71 BRCA TCGA-A8-A08L ADAMTS9 SNP Nonsense_Mutation 3 64666906 G C 45 70 BRCA TCGA-A8-A08L OR5H1 SNP Missense_Mutation 3 97851818 T C 50 62 BRCA TCGA-A8-A08L PDE5A SNP Missense_Mutation 4 120528318 G T 48 87 BRCA TCGA-A8-A08L KIAA1109 SNP Missense_Mutation 4 123234825 C T 17 97 BRCA TCGA-A8-A08L SORBS2 SNP Missense_Mutation 4 186578664 C G 32 82 BRCA TCGA-A8-A08L NSG1 SNP Silent 4 4411347 C A 32 62 BRCA TCGA-A8-A08L ANKRD17 SNP Missense_Mutation 4 74014637 A G 4 92 BRCA TCGA-A8-A08L SEC31A SNP Missense_Mutation 4 83782814 G T 42 59 BRCA TCGA-A8-A08L SLCO4C1 SNP Missense_Mutation 5 101582963 T C 49 62 BRCA TCGA-A8-A08L PCDHA4 SNP Missense_Mutation 5 140187617 C T 29 55 BRCA TCGA-A8-A08L SPINK5 SNP Silent 5 147481391 T C 64 39 BRCA TCGA-A8-A08L GABRP SNP Silent 5 170224476 G A 37 18 BRCA TCGA-A8-A08L AHRR SNP Silent 5 413494 A G 3 58 BRCA TCGA-A8-A08L C5orf28 SNP Missense_Mutation 5 43446514 G T 36 77 BRCA TCGA-A8-A08L GZMA SNP Splice_site 5 54403622 G A 41 53 BRCA TCGA-A8-A08L SNX3 SNP Missense_Mutation 6 108544177 T G 56 79 BRCA TCGA-A8-A08L GPRC6A SNP Missense_Mutation 6 117130607 G C 41 66 BRCA TCGA-A8-A08L FAM184A SNP Silent 6 119297156 G T 40 55 BRCA TCGA-A8-A08L SOGA3 SNP Nonsense_Mutation 6 127834113 C A 29 100 BRCA TCGA-A8-A08L TAAR6 SNP Missense_Mutation 6 132891576 T G 64 74 BRCA TCGA-A8-A08L CITED2 SNP Missense_Mutation 6 139694322 C T 29 98 BRCA TCGA-A8-A08L TIAM2 SNP Missense_Mutation 6 155450749 G C 33 54 BRCA TCGA-A8-A08L OR12D3 SNP Silent 6 29342374 T G 55 53 BRCA TCGA-A8-A08L ATP6V1G2 SNP Nonsense_Mutation 6 31513277 G A 46 74 BRCA TCGA-A8-A08L TNXB SNP Silent 6 32021406 C G 29 53 BRCA TCGA-A8-A08L ITPR3 SNP Nonsense_Mutation 6 33663498 C T 25 94 BRCA TCGA-A8-A08L PI16 SNP Silent 6 36930982 C A 30 52 BRCA TCGA-A8-A08L TREM2 SNP Missense_Mutation 6 41126463 G T 44 50 BRCA TCGA-A8-A08L TREML2 SNP Missense_Mutation 6 41162428 T G 59 51 BRCA TCGA-A8-A08L SLC35B2 SNP Missense_Mutation 6 44222510 G A 38 97 BRCA TCGA-A8-A08L MUC17 SNP Splice_site 7 100692662 C T 19 41 BRCA TCGA-A8-A08L RELN SNP Missense_Mutation 7 103236919 C G 32 99 BRCA TCGA-A8-A08L KCND2 SNP Missense_Mutation 7 119915782 G A 40 100 BRCA TCGA-A8-A08L KIAA1549 SNP Missense_Mutation 7 138583717 T A 56 49 BRCA TCGA-A8-A08L TAS2R40 SNP Missense_Mutation 7 142919307 G C 45 53 BRCA TCGA-A8-A08L OR2A12 SNP Silent 7 143793109 C T 30 28 BRCA TCGA-A8-A08L NEUROD6 SNP Missense_Mutation 7 31378755 A G 3 69 BRCA TCGA-A8-A08L ANLN SNP Missense_Mutation 7 36465627 A T 3 77 BRCA TCGA-A8-A08L STARD3NL SNP Missense_Mutation 7 38247149 G C 34 79 BRCA TCGA-A8-A08L IGFBP3 SNP Silent 7 45956971 C T 27 37 BRCA TCGA-A8-A08L PKHD1L1 SNP Missense_Mutation 8 110534984 G T 34 47 BRCA TCGA-A8-A08L SYBU SNP Missense_Mutation 8 110587199 A C 11 77 BRCA TCGA-A8-A08L MTBP DEL Frame_Shift_Del 8 121463507 GTTGAGTGTTTTGAAGAAGAAGACA - 48 61 BRCA TCGA-A8-A08L EXTL3 SNP Missense_Mutation 8 28575722 A G 8 67 BRCA TCGA-A8-A08L CSMD1 SNP Silent 8 3889446 G A 41 58 BRCA TCGA-A8-A08L CSPP1 SNP Missense_Mutation 8 68074106 C G 21 69 BRCA TCGA-A8-A08L PREX2 SNP Missense_Mutation 8 69129855 A T 6 89 BRCA TCGA-A8-A08L GABBR2 SNP Silent 9 101148012 G T 41 68 BRCA TCGA-A8-A08L PALM2-AKAP2 SNP Missense_Mutation 9 112899779 C T 24 66 BRCA TCGA-A8-A08L DEC1 SNP Splice_site 9 118164403 G C 45 59 BRCA TCGA-A8-A08L C5 SNP Silent 9 123777517 G A 45 79 BRCA TCGA-A8-A08L CRAT DEL Splice_Site 9 131865291 CTTGTCAATCATGAC - 20 97 BRCA TCGA-A8-A08L NUP214 SNP Splice_Site 9 134108840 G A 35 79 BRCA TCGA-A8-A08L TLN1 SNP Nonsense_Mutation 9 35714848 G C 45 97 BRCA TCGA-A8-A08L SLC1A1 SNP Silent 9 4583113 G A 45 57 BRCA TCGA-A8-A08L JAK2 SNP Nonsense_Mutation 9 5044448 T G 50 51 BRCA TCGA-A8-A08L APBA1 SNP Missense_Mutation 9 72055953 C G 32 100 BRCA TCGA-A8-A08L SMC5 SNP Missense_Mutation 9 72893519 G C 35 84 BRCA TCGA-A8-A08L RORB SNP Missense_Mutation 9 77275546 G C 33 74 BRCA TCGA-A8-A08L BICD2 SNP Missense_Mutation 9 95480926 C A 24 50 BRCA TCGA-A8-A08O CELSR2 SNP Missense_Mutation 1 109814973 A C 6 84 BRCA TCGA-A8-A08O CD1D SNP Missense_Mutation 1 158151458 G A 37 50 BRCA TCGA-A8-A08O PADI1 SNP Silent 1 17567195 G T 47 48 BRCA TCGA-A8-A08O C1orf116 SNP Silent 1 207196236 A G 11 38 BRCA TCGA-A8-A08O SPATA17 SNP Silent 1 217975165 A G 1 56 BRCA TCGA-A8-A08O TSSK3 SNP Splice_Site 1 32828449 T G 59 65 BRCA TCGA-A8-A08O LDB1 SNP Missense_Mutation 10 103869779 A G 14 65 BRCA TCGA-A8-A08O ELOVL3 SNP Splice_Site 10 103986408 T G 59 68 BRCA TCGA-A8-A08O DDX10 SNP Splice_Site 11 108722938 T G 57 74 BRCA TCGA-A8-A08O ROBO3 SNP Missense_Mutation 11 124740064 G A 40 85 BRCA TCGA-A8-A08O KIAA1549L SNP Missense_Mutation 11 33628300 A C 6 54 BRCA TCGA-A8-A08O OR8K1 SNP Silent 11 56114030 G A 48 46 BRCA TCGA-A8-A08O INCENP SNP Silent 11 61898031 C T 23 50 BRCA TCGA-A8-A08O ESRRA SNP Silent 11 64082580 C T 28 62 BRCA TCGA-A8-A08O P2RX4 SNP Missense_Mutation 12 121659957 A C 6 54 BRCA TCGA-A8-A08O ATF7IP SNP Missense_Mutation 12 14631311 G A 37 86 BRCA TCGA-A8-A08O MYL6 SNP Missense_Mutation 12 56554049 A C 3 66 BRCA TCGA-A8-A08O COL4A2 SNP Silent 13 111111152 C T 19 41 BRCA TCGA-A8-A08O PLEKHH1 SNP Splice_Site 14 68042723 G T 44 97 BRCA TCGA-A8-A08O TUBGCP4 SNP Silent 15 43696712 T C 49 54 BRCA TCGA-A8-A08O FUS SNP Missense_Mutation 16 31202420 G C 33 66 BRCA TCGA-A8-A08O MYH3 SNP Missense_Mutation 17 10552971 T G 59 89 BRCA TCGA-A8-A08O SKAP1 SNP Silent 17 46257608 G A 33 70 BRCA TCGA-A8-A08O CSHL1 SNP Missense_Mutation 17 61988207 C T 19 54 BRCA TCGA-A8-A08O PRKAR1A SNP Missense_Mutation 17 66526534 G T 33 88 BRCA TCGA-A8-A08O PRODH2 SNP Silent 19 36293136 G A 37 47 BRCA TCGA-A8-A08O APOB SNP Missense_Mutation 2 21234125 A T 12 72 BRCA TCGA-A8-A08O ADA SNP Missense_Mutation 20 43249699 T C 64 62 BRCA TCGA-A8-A08O CLCN4 SNP Silent 23 10176393 C T 24 54 BRCA TCGA-A8-A08O GDI1 SNP Splice_site 23 153670141 G A 35 93 BRCA TCGA-A8-A08O ZXDB SNP Missense_Mutation 23 57620090 A G 9 80 BRCA TCGA-A8-A08O PIK3R4 DEL In_Frame_Del 3 130463555 AACTGGCAAAAT - 1 91 BRCA TCGA-A8-A08O PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A08O TRANK1 SNP Missense_Mutation 3 36874921 G C 45 58 BRCA TCGA-A8-A08O EGF SNP Missense_Mutation 4 110901145 G A 34 77 BRCA TCGA-A8-A08O PPP2CA SNP Missense_Mutation 5 133537565 G A 41 100 BRCA TCGA-A8-A08O HSP90AB1 DEL Frame_Shift_Del 6 44217181 AAATTGACATCATCCCC - 1 89 BRCA TCGA-A8-A08O PLXNA4 SNP Silent 7 132193327 T A 51 33 BRCA TCGA-A8-A08O TAF1L SNP Missense_Mutation 9 32633083 C T 27 75 BRCA TCGA-A8-A08P SPRR2D SNP Missense_Mutation 1 153012797 T C 56 67 BRCA TCGA-A8-A08P BTRC SNP Silent 10 103295203 G C 45 57 BRCA TCGA-A8-A08P NXF1 SNP Missense_Mutation 11 62562413 T C 52 58 BRCA TCGA-A8-A08P SLCO1B3 SNP Missense_Mutation 12 21030801 T G 64 47 BRCA TCGA-A8-A08P ESYT1 SNP Missense_Mutation 12 56527640 C T 31 54 BRCA TCGA-A8-A08P BAZ2A DEL Frame_Shift_Del 12 56998028 T - 56 90 BRCA TCGA-A8-A08P BAZ2A SNP Missense_Mutation 12 56998035 T G 62 90 BRCA TCGA-A8-A08P C12orf50 SNP Silent 12 88380150 C T 29 62 BRCA TCGA-A8-A08P A2ML1 SNP Missense_Mutation 12 8995779 G A 40 47 BRCA TCGA-A8-A08P HTR2A SNP Splice_site 13 47408970 T C 53 38 BRCA TCGA-A8-A08P MYH7 SNP Silent 14 23885264 G A 46 56 BRCA TCGA-A8-A08P PPP2R3C SNP Missense_Mutation 14 35577392 T C 49 93 BRCA TCGA-A8-A08P GNB5 SNP Missense_Mutation 15 52425633 G A 38 84 BRCA TCGA-A8-A08P BTBD1 SNP Silent 15 83710634 T G 54 66 BRCA TCGA-A8-A08P KIF2B SNP Silent 17 51902195 T C 52 26 BRCA TCGA-A8-A08P CEP95 SNP Missense_Mutation 17 62517574 C G 32 45 BRCA TCGA-A8-A08P TP53 DEL Frame_Shift_Del 17 7578458 GGACGCG - 39 63 BRCA TCGA-A8-A08P NDEL1 SNP Silent 17 8354246 G A 39 40 BRCA TCGA-A8-A08P FAM187B SNP Missense_Mutation 19 35715792 G A 38 47 BRCA TCGA-A8-A08P RAB4B SNP Silent 19 41286351 T A 59 52 BRCA TCGA-A8-A08P TRAK2 SNP Missense_Mutation 2 202272210 C G 32 79 BRCA TCGA-A8-A08P MGAT4A SNP Silent 2 99272904 G A 34 48 BRCA TCGA-A8-A08P IDH3B SNP Missense_Mutation 20 2644642 A T 11 50 BRCA TCGA-A8-A08P C20orf132 SNP Missense_Mutation 20 35748218 C G 32 58 BRCA TCGA-A8-A08P ZNF831 SNP Nonsense_Mutation 20 57768844 C T 29 52 BRCA TCGA-A8-A08P DOPEY2 SNP Missense_Mutation 21 37605126 C G 32 58 BRCA TCGA-A8-A08P DOPEY2 SNP Missense_Mutation 21 37605200 C G 32 59 BRCA TCGA-A8-A08P ACO2 SNP Missense_Mutation 22 41921257 G A 48 89 BRCA TCGA-A8-A08P ACPP SNP Missense_Mutation 3 132068766 G T 48 78 BRCA TCGA-A8-A08P PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-A8-A08P ACAP2 SNP Nonsense_Mutation 3 195102673 G A 37 78 BRCA TCGA-A8-A08P SCN10A SNP Missense_Mutation 3 38760181 G C 44 97 BRCA TCGA-A8-A08P SH3BP2 SNP Missense_Mutation 4 2822414 C T 26 94 BRCA TCGA-A8-A08P ACSL6 SNP Missense_Mutation 5 131325171 C T 23 100 BRCA TCGA-A8-A08P GFRA3 SNP Missense_Mutation 5 137599965 G A 39 50 BRCA TCGA-A8-A08P BRIX1 SNP Missense_Mutation 5 34924961 G A 33 83 BRCA TCGA-A8-A08P C5orf42 SNP Missense_Mutation 5 37179528 C A 17 49 BRCA TCGA-A8-A08P ITPR3 SNP Missense_Mutation 6 33639885 C G 29 51 BRCA TCGA-A8-A08P RRAGD SNP Missense_Mutation 6 90088968 T C 54 93 BRCA TCGA-A8-A08P MLL3 SNP Nonsense_Mutation 7 151891576 C A 32 98 BRCA TCGA-A8-A08P HOXA1 SNP Missense_Mutation 7 27134950 G A 39 57 BRCA TCGA-A8-A08P CYP3A7 SNP Missense_Mutation 7 99314837 G A 38 50 BRCA TCGA-A8-A08P WDR67 DEL In_Frame_Del 8 124096492 CTT - 20 98 BRCA TCGA-A8-A08P FAM91A1 SNP Missense_Mutation 8 124798772 G T 41 100 BRCA TCGA-A8-A08P SCARA3 SNP Silent 8 27528481 C T 27 47 BRCA TCGA-A8-A08P OR1K1 SNP Missense_Mutation 9 125562550 T C 50 73 BRCA TCGA-A8-A08P FREM1 SNP Missense_Mutation 9 14859403 T C 49 62 BRCA TCGA-A8-A08R PRPF38B SNP Missense_Mutation 1 109238761 C G 32 100 BRCA TCGA-A8-A08R FNDC7 SNP Missense_Mutation 1 109268596 C T 30 99 BRCA TCGA-A8-A08R KCNA2 DEL In_Frame_Del 1 111146353 GCCTCT - 42 100 BRCA TCGA-A8-A08R RSBN1 SNP Missense_Mutation 1 114340575 G C 39 59 BRCA TCGA-A8-A08R TTF2 SNP Missense_Mutation 1 117618186 G C 41 51 BRCA TCGA-A8-A08R PRAMEF10 SNP Missense_Mutation 1 12954759 C G 32 47 BRCA TCGA-A8-A08R ADCY10 SNP Nonsense_Mutation 1 167791335 G A 47 52 BRCA TCGA-A8-A08R F5 SNP Missense_Mutation 1 169510453 G T 48 47 BRCA TCGA-A8-A08R CACNA1E SNP Splice_Site 1 181680207 T C 57 90 BRCA TCGA-A8-A08R TP53BP2 SNP Missense_Mutation 1 223989890 G C 45 94 BRCA TCGA-A8-A08R WDR64 SNP Nonsense_Mutation 1 241912926 G T 37 82 BRCA TCGA-A8-A08R WDR64 SNP Missense_Mutation 1 241953984 C G 32 67 BRCA TCGA-A8-A08R FAM54B SNP Nonsense_Mutation 1 26153135 G A 47 99 BRCA TCGA-A8-A08R KIAA0319L SNP Silent 1 35908580 T C 60 47 BRCA TCGA-A8-A08R RNF220 SNP Nonsense_Mutation 1 44877905 C T 19 87 BRCA TCGA-A8-A08R ANKRD13C SNP Nonsense_Mutation 1 70781223 G A 46 96 BRCA TCGA-A8-A08R ZRANB2 SNP Missense_Mutation 1 71532605 C A 18 60 BRCA TCGA-A8-A08R ELTD1 SNP Missense_Mutation 1 79403558 C G 28 57 BRCA TCGA-A8-A08R TTLL7 SNP Splice_site 1 84356005 C T 24 95 BRCA TCGA-A8-A08R EMX2 SNP Missense_Mutation 10 119307628 A G 11 91 BRCA TCGA-A8-A08R BAG3 DEL Frame_Shift_Del 10 121429661 CC - 26 59 BRCA TCGA-A8-A08R SGMS1 SNP Missense_Mutation 10 52103376 G A 42 66 BRCA TCGA-A8-A08R HERC4 DEL Frame_Shift_Del 10 69793826 TGCA - 63 77 BRCA TCGA-A8-A08R GRID1 SNP Silent 10 87966206 T G 59 8 BRCA TCGA-A8-A08R ZC3H12C SNP Missense_Mutation 11 110035764 C T 22 63 BRCA TCGA-A8-A08R NCAM1 SNP Splice_site 11 113103076 G C 35 100 BRCA TCGA-A8-A08R POU2F3 SNP Missense_Mutation 11 120173009 C A 32 75 BRCA TCGA-A8-A08R NCAPD3 SNP Splice_Site 11 134073802 C G 32 92 BRCA TCGA-A8-A08R B3GAT1 SNP Missense_Mutation 11 134253872 G T 40 99 BRCA TCGA-A8-A08R NELL1 SNP Missense_Mutation 11 20949974 C T 22 62 BRCA TCGA-A8-A08R OR52M1 SNP Nonsense_Mutation 11 4566606 C A 20 62 BRCA TCGA-A8-A08R FAT3 SNP Missense_Mutation 11 92534181 C G 21 88 BRCA TCGA-A8-A08R KLRC1 DEL Frame_Shift_Del 12 10600152 T - 52 62 BRCA TCGA-A8-A08R TAS2R9 SNP Missense_Mutation 12 10961953 A T 11 54 BRCA TCGA-A8-A08R CUX2 SNP Missense_Mutation 12 111785467 G C 41 82 BRCA TCGA-A8-A08R CCDC60 SNP Missense_Mutation 12 119943035 G C 35 53 BRCA TCGA-A8-A08R CNTN1 SNP Missense_Mutation 12 41337509 G A 41 74 BRCA TCGA-A8-A08R RAD51AP1 SNP Missense_Mutation 12 4653024 C G 32 41 BRCA TCGA-A8-A08R SLC11A2 SNP Missense_Mutation 12 51384687 G C 41 53 BRCA TCGA-A8-A08R KRT79 SNP Missense_Mutation 12 53218090 G C 48 82 BRCA TCGA-A8-A08R RDH5 SNP Silent 12 56118203 C T 22 54 BRCA TCGA-A8-A08R PHLDA1 SNP Missense_Mutation 12 76425062 C A 22 95 BRCA TCGA-A8-A08R CCER1 SNP Missense_Mutation 12 91347376 T A 59 23 BRCA TCGA-A8-A08R NALCN SNP Missense_Mutation 13 101733990 A C 8 90 BRCA TCGA-A8-A08R CCDC168 SNP Missense_Mutation 13 103386074 T G 50 51 BRCA TCGA-A8-A08R EDNRB SNP Silent 13 78474078 A G 5 48 BRCA TCGA-A8-A08R MYH6 SNP Silent 14 23862941 C T 24 50 BRCA TCGA-A8-A08R PYGL SNP Missense_Mutation 14 51398410 T G 56 77 BRCA TCGA-A8-A08R FLRT2 SNP Silent 14 86088314 C T 19 46 BRCA TCGA-A8-A08R DUOX1 SNP Missense_Mutation 15 45437157 A T 3 58 BRCA TCGA-A8-A08R FANCI SNP Missense_Mutation 15 89807217 T C 49 90 BRCA TCGA-A8-A08R SMG1 SNP Missense_Mutation 16 18846446 A G 6 91 BRCA TCGA-A8-A08R ITGAX SNP Silent 16 31371718 C T 17 50 BRCA TCGA-A8-A08R TRAP1 SNP Missense_Mutation 16 3729754 G C 41 92 BRCA TCGA-A8-A08R PHKB SNP Missense_Mutation 16 47683069 A G 12 90 BRCA TCGA-A8-A08R CES1 SNP Missense_Mutation 16 55857555 G A 38 51 BRCA TCGA-A8-A08R CDH13 SNP Silent 16 83378511 G C 42 38 BRCA TCGA-A8-A08R NCOR1 SNP Missense_Mutation 17 15938204 G A 33 96 BRCA TCGA-A8-A08R CNTNAP1 SNP Missense_Mutation 17 40840974 G A 41 78 BRCA TCGA-A8-A08R ANKFY1 SNP Missense_Mutation 17 4111293 G A 48 99 BRCA TCGA-A8-A08R LRRC46 SNP Silent 17 45909569 G A 33 59 BRCA TCGA-A8-A08R SGCA SNP Silent 17 48247563 G C 47 84 BRCA TCGA-A8-A08R ANKRD40 SNP Missense_Mutation 17 48784939 A C 6 84 BRCA TCGA-A8-A08R CEP95 SNP Silent 17 62510391 A T 3 47 BRCA TCGA-A8-A08R SLC16A6 SNP Silent 17 66274345 G A 40 40 BRCA TCGA-A8-A08R BTBD17 SNP Missense_Mutation 17 72352875 T A 54 91 BRCA TCGA-A8-A08R TRIM47 SNP Silent 17 73872166 T G 61 42 BRCA TCGA-A8-A08R METTL23 SNP Missense_Mutation 17 74729704 C G 32 99 BRCA TCGA-A8-A08R FXR2 SNP Missense_Mutation 17 7497244 A G 15 88 BRCA TCGA-A8-A08R TP53 INS Frame_Shift_Ins 17 7577566 - A 61 85 BRCA TCGA-A8-A08R TMEM107 SNP Silent 17 8077909 G C 39 34 BRCA TCGA-A8-A08R RGL3 SNP Silent 19 11507984 C T 28 55 BRCA TCGA-A8-A08R OR10H4 SNP Silent 19 16060405 T G 55 41 BRCA TCGA-A8-A08R FAM129C SNP Missense_Mutation 19 17653023 C T 27 53 BRCA TCGA-A8-A08R FCHO1 SNP Silent 19 17889452 C T 22 47 BRCA TCGA-A8-A08R COPE SNP Silent 19 19016390 G A 37 40 BRCA TCGA-A8-A08R ZNF30 SNP Missense_Mutation 19 35435393 G C 44 65 BRCA TCGA-A8-A08R ZNF565 SNP Missense_Mutation 19 36673699 G T 43 94 BRCA TCGA-A8-A08R ZNF570 SNP Silent 19 37975362 A C 15 69 BRCA TCGA-A8-A08R MAP4K1 SNP Silent 19 39098533 C T 19 33 BRCA TCGA-A8-A08R LRFN1 SNP Missense_Mutation 19 39798427 C G 27 91 BRCA TCGA-A8-A08R PPP5D1 SNP Silent 19 47030324 G T 45 48 BRCA TCGA-A8-A08R SIGLEC9 SNP Missense_Mutation 19 51628959 C T 24 49 BRCA TCGA-A8-A08R FPR2 SNP Missense_Mutation 19 52272299 C A 30 89 BRCA TCGA-A8-A08R TMEM87B SNP Silent 2 112847241 G C 47 59 BRCA TCGA-A8-A08R SAP130 SNP Silent 2 128750777 A T 15 51 BRCA TCGA-A8-A08R GALNT13 SNP Nonsense_Mutation 2 155115571 A T 7 78 BRCA TCGA-A8-A08R FIGN SNP Missense_Mutation 2 164466580 C G 29 100 BRCA TCGA-A8-A08R TTN SNP Silent 2 179501201 G A 39 36 BRCA TCGA-A8-A08R DNAH7 SNP Missense_Mutation 2 196753032 A G 4 79 BRCA TCGA-A8-A08R NDUFB3 SNP Missense_Mutation 2 201950321 G C 33 59 BRCA TCGA-A8-A08R APOB SNP Silent 2 21232270 G T 35 40 BRCA TCGA-A8-A08R EFR3B SNP Missense_Mutation 2 25344626 T G 59 86 BRCA TCGA-A8-A08R C2orf16 SNP Silent 2 27802013 G C 43 48 BRCA TCGA-A8-A08R LTBP1 SNP Silent 2 33482526 G A 47 65 BRCA TCGA-A8-A08R LRPPRC DEL Frame_Shift_Del 2 44190742 T - 59 47 BRCA TCGA-A8-A08R CCDC104 SNP Silent 2 55763007 T C 61 45 BRCA TCGA-A8-A08R GSS SNP Missense_Mutation 20 33530406 A C 11 92 BRCA TCGA-A8-A08R SLC12A5 SNP Missense_Mutation 20 44678383 A T 11 73 BRCA TCGA-A8-A08R PREX1 SNP Missense_Mutation 20 47305213 G T 43 85 BRCA TCGA-A8-A08R FAM209A SNP Missense_Mutation 20 55101071 C G 25 50 BRCA TCGA-A8-A08R BRWD1 SNP Nonsense_Mutation 21 40571202 C A 29 69 BRCA TCGA-A8-A08R PRAME SNP Missense_Mutation 22 22890750 C G 25 52 BRCA TCGA-A8-A08R CELSR1 SNP Missense_Mutation 22 46777911 G A 44 53 BRCA TCGA-A8-A08R MAPK8IP2 SNP Missense_Mutation 22 51041670 C T 27 76 BRCA TCGA-A8-A08R MUM1L1 SNP Missense_Mutation 23 105450903 A G 16 53 BRCA TCGA-A8-A08R DCAF12L2 SNP Missense_Mutation 23 125298656 C G 18 59 BRCA TCGA-A8-A08R SAGE1 SNP Silent 23 134991072 A G 2 50 BRCA TCGA-A8-A08R TFE3 SNP Silent 23 48896923 T A 59 60 BRCA TCGA-A8-A08R CXorf67 SNP Missense_Mutation 23 51150094 G A 38 54 BRCA TCGA-A8-A08R KIF4A SNP Missense_Mutation 23 69594088 G A 41 88 BRCA TCGA-A8-A08R ROPN1 SNP Silent 3 123688911 G A 34 66 BRCA TCGA-A8-A08R MCM2 SNP Missense_Mutation 3 127325147 A C 6 69 BRCA TCGA-A8-A08R CP SNP Splice_site 3 148903026 T G 56 56 BRCA TCGA-A8-A08R SI SNP Missense_Mutation 3 164773011 G C 45 55 BRCA TCGA-A8-A08R PIK3CA SNP Missense_Mutation 3 178937452 T A 64 91 BRCA TCGA-A8-A08R FETUB SNP Missense_Mutation 3 186362642 C G 27 51 BRCA TCGA-A8-A08R RFC4 SNP Silent 3 186508118 G C 45 41 BRCA TCGA-A8-A08R ATP13A5 SNP Missense_Mutation 3 193044787 G C 36 72 BRCA TCGA-A8-A08R LRRC33 SNP Silent 3 196386694 G T 41 53 BRCA TCGA-A8-A08R KIAA0226 SNP Missense_Mutation 3 197421305 C T 23 95 BRCA TCGA-A8-A08R IQCF2 SNP Silent 3 51897216 T C 64 41 BRCA TCGA-A8-A08R CNTN3 SNP Missense_Mutation 3 74313557 A G 6 76 BRCA TCGA-A8-A08R TADA3 SNP Missense_Mutation 3 9822135 C T 23 98 BRCA TCGA-A8-A08R ANKRD50 SNP Nonsense_Mutation 4 125593162 T A 62 89 BRCA TCGA-A8-A08R LRBA SNP Missense_Mutation 4 151829594 G C 41 100 BRCA TCGA-A8-A08R SLC25A4 SNP Missense_Mutation 4 186066044 C T 23 85 BRCA TCGA-A8-A08R RBM47 SNP Missense_Mutation 4 40427971 G T 43 99 BRCA TCGA-A8-A08R TEC SNP Silent 4 48230590 C T 18 48 BRCA TCGA-A8-A08R PDCL2 SNP Missense_Mutation 4 56435917 A C 8 65 BRCA TCGA-A8-A08R NPFFR2 SNP Missense_Mutation 4 73013148 G T 45 100 BRCA TCGA-A8-A08R PDLIM5 SNP Silent 4 95539203 A T 6 37 BRCA TCGA-A8-A08R PJA2 SNP Missense_Mutation 5 108704338 C G 32 69 BRCA TCGA-A8-A08R WDR36 SNP Missense_Mutation 5 110445999 C G 29 69 BRCA TCGA-A8-A08R SLC23A1 SNP Missense_Mutation 5 138715509 G C 45 57 BRCA TCGA-A8-A08R PCDHGA7 SNP Missense_Mutation 5 140763532 A G 4 39 BRCA TCGA-A8-A08R PCDHGB5 SNP Missense_Mutation 5 140779116 C A 18 60 BRCA TCGA-A8-A08R PCDHGB7 SNP Silent 5 140797618 C T 27 52 BRCA TCGA-A8-A08R CPEB4 SNP Silent 5 173317753 A G 5 56 BRCA TCGA-A8-A08R UGT3A1 SNP Missense_Mutation 5 35955951 C T 19 46 BRCA TCGA-A8-A08R TUBE1 SNP Missense_Mutation 6 112397239 C A 20 79 BRCA TCGA-A8-A08R SYNE1 SNP Nonsense_Mutation 6 152576053 G A 45 86 BRCA TCGA-A8-A08R JARID2 SNP Missense_Mutation 6 15496556 C G 22 76 BRCA TCGA-A8-A08R BTN1A1 SNP Missense_Mutation 6 26509208 T G 51 57 BRCA TCGA-A8-A08R DNAH8 SNP Missense_Mutation 6 38825426 C A 29 73 BRCA TCGA-A8-A08R XPO5 SNP Missense_Mutation 6 43491629 G T 35 57 BRCA TCGA-A8-A08R IL17A SNP Silent 6 52053964 C A 21 66 BRCA TCGA-A8-A08R MLIP SNP Missense_Mutation 6 53986383 C G 30 65 BRCA TCGA-A8-A08R BEND6 SNP Silent 6 56857343 C A 29 51 BRCA TCGA-A8-A08R ANKRD6 SNP Missense_Mutation 6 90340379 G A 40 51 BRCA TCGA-A8-A08R MAP3K7 SNP Silent 6 91257871 T G 63 61 BRCA TCGA-A8-A08R MUC12 SNP Missense_Mutation 7 100646595 C T 22 62 BRCA TCGA-A8-A08R ATXN7L1 SNP Splice_Site 7 105260645 A T 14 90 BRCA TCGA-A8-A08R TFEC SNP Missense_Mutation 7 115580952 G T 42 96 BRCA TCGA-A8-A08R NUP205 SNP Missense_Mutation 7 135300790 A G 10 91 BRCA TCGA-A8-A08R FKBP6 SNP Missense_Mutation 7 72756874 G T 47 52 BRCA TCGA-A8-A08R CD36 SNP Silent 7 80303418 T G 56 47 BRCA TCGA-A8-A08R LRRD1 SNP Missense_Mutation 7 91775484 A T 2 80 BRCA TCGA-A8-A08R FZD6 SNP Missense_Mutation 8 104340619 T G 60 89 BRCA TCGA-A8-A08R DCAF13 SNP Missense_Mutation 8 104452383 A G 11 52 BRCA TCGA-A8-A08R RIMS2 SNP Missense_Mutation 8 104973347 T C 52 79 BRCA TCGA-A8-A08R ZFPM2 SNP Missense_Mutation 8 106814808 G C 34 100 BRCA TCGA-A8-A08R TCEA1 SNP Missense_Mutation 8 54900706 C A 24 97 BRCA TCGA-A8-A08R RALYL SNP Missense_Mutation 8 85833143 G T 36 64 BRCA TCGA-A8-A08R KIAA0368 SNP Missense_Mutation 9 114145598 C A 17 96 BRCA TCGA-A8-A08R ADAMTSL1 SNP Silent 9 18474248 G C 43 87 BRCA TCGA-A8-A08R PAX5 SNP Missense_Mutation 9 37015189 T C 49 93 BRCA TCGA-A8-A08R FGD3 SNP Missense_Mutation 9 95795090 A T 7 59 BRCA TCGA-A8-A08S MTOR SNP Missense_Mutation 1 11319442 C T 27 63 BRCA TCGA-A8-A08S NPHS2 SNP Missense_Mutation 1 179523663 C T 25 74 BRCA TCGA-A8-A08S KDM5B SNP Missense_Mutation 1 202746170 C T 19 100 BRCA TCGA-A8-A08S OBSCN DEL Frame_Shift_Del 1 228464221 G - 35 57 BRCA TCGA-A8-A08S OBSCN INS Frame_Shift_Ins 1 228464225 - G 25 85 BRCA TCGA-A8-A08S NCDN SNP Missense_Mutation 1 36028200 A C 6 53 BRCA TCGA-A8-A08S LDLRAD1 SNP Silent 1 54479916 G A 46 46 BRCA TCGA-A8-A08S CALHM3 SNP Missense_Mutation 10 105233443 T G 59 69 BRCA TCGA-A8-A08S C11orf63 SNP Missense_Mutation 11 122774779 A C 14 59 BRCA TCGA-A8-A08S IGSF9B SNP Silent 11 133790845 T G 59 67 BRCA TCGA-A8-A08S ZP1 SNP Silent 11 60642669 G T 42 45 BRCA TCGA-A8-A08S SETD1B DEL Frame_Shift_Del 12 122243990 CACGTGGAGCTGGA - 21 98 BRCA TCGA-A8-A08S CDK4 SNP Missense_Mutation 12 58144765 T G 63 75 BRCA TCGA-A8-A08S TGM1 SNP Missense_Mutation 14 24727530 A C 6 86 BRCA TCGA-A8-A08S HEATR5A SNP Missense_Mutation 14 31855776 C T 19 64 BRCA TCGA-A8-A08S FOXA1 DEL Frame_Shift_Del 14 38061228 AACAT - 9 85 BRCA TCGA-A8-A08S ABCC6 SNP Missense_Mutation 16 16244574 T G 50 61 BRCA TCGA-A8-A08S SMCR8 SNP Missense_Mutation 17 18226154 A C 6 55 BRCA TCGA-A8-A08S MPP3 SNP Splice_site 17 41909250 C A 21 80 BRCA TCGA-A8-A08S FZD2 SNP Silent 17 42636265 C T 31 50 BRCA TCGA-A8-A08S ACE SNP Silent 17 61570944 C T 19 36 BRCA TCGA-A8-A08S C17orf70 SNP Missense_Mutation 17 79508346 C T 27 60 BRCA TCGA-A8-A08S NPC1 SNP Silent 18 21114479 C T 19 20 BRCA TCGA-A8-A08S SIN3B SNP Missense_Mutation 19 16942408 G A 33 83 BRCA TCGA-A8-A08S GMIP SNP Silent 19 19746227 C T 24 54 BRCA TCGA-A8-A08S ZNF676 SNP Missense_Mutation 19 22363549 G A 35 65 BRCA TCGA-A8-A08S AKT2 SNP Nonsense_Mutation 19 40761100 G A 37 48 BRCA TCGA-A8-A08S ERCC2 SNP Missense_Mutation 19 45868130 T C 55 85 BRCA TCGA-A8-A08S ZNF615 SNP Missense_Mutation 19 52497121 C T 20 49 BRCA TCGA-A8-A08S NLRP2 SNP Missense_Mutation 19 55494133 T G 59 71 BRCA TCGA-A8-A08S GPR108 INS Frame_Shift_Ins 19 6737533 - C 46 55 BRCA TCGA-A8-A08S FBN3 DEL Frame_Shift_Del 19 8176051 G - 39 26 BRCA TCGA-A8-A08S GALNT5 SNP Silent 2 158115248 G A 45 63 BRCA TCGA-A8-A08S C2orf47 SNP Missense_Mutation 2 200826596 G T 44 73 BRCA TCGA-A8-A08S EML6 SNP Missense_Mutation 2 55090940 A G 7 89 BRCA TCGA-A8-A08S TSGA10 SNP Missense_Mutation 2 99725408 C T 19 74 BRCA TCGA-A8-A08S EDEM2 SNP Missense_Mutation 20 33706505 T C 52 91 BRCA TCGA-A8-A08S PTGIS INS Frame_Shift_Ins 20 48160880 - TG 32 55 BRCA TCGA-A8-A08S CDH26 SNP Missense_Mutation 20 58547144 G A 38 50 BRCA TCGA-A8-A08S PRPF6 SNP Missense_Mutation 20 62655955 A G 1 92 BRCA TCGA-A8-A08S WWC3 SNP Silent 23 10106889 C T 19 45 BRCA TCGA-A8-A08S FRMPD4 SNP Missense_Mutation 23 12735775 C T 21 94 BRCA TCGA-A8-A08S MAGEB6 SNP Missense_Mutation 23 26212915 G T 45 44 BRCA TCGA-A8-A08S SLC6A1 SNP Silent 3 11059119 C T 27 46 BRCA TCGA-A8-A08S PHLDB2 SNP Silent 3 111604184 A G 7 37 BRCA TCGA-A8-A08S XCR1 SNP Missense_Mutation 3 46063031 T G 59 51 BRCA TCGA-A8-A08S CISH INS Frame_Shift_Ins 3 50645186 - G 7 66 BRCA TCGA-A8-A08S ARAP2 SNP Missense_Mutation 4 36126581 C A 32 69 BRCA TCGA-A8-A08S ABCG2 DEL Splice_Site 4 89018761 T - 56 76 BRCA TCGA-A8-A08S EGR1 SNP Silent 5 137801480 G A 45 63 BRCA TCGA-A8-A08S LRRC70 SNP Missense_Mutation 5 61876059 G C 35 54 BRCA TCGA-A8-A08S PIK3R1 INS In_Frame_Ins 5 67589613 - AAGTCGAGAATATGATAG 1 89 BRCA TCGA-A8-A08S ATXN1 SNP Missense_Mutation 6 16328427 G A 39 55 BRCA TCGA-A8-A08S MAS1L SNP Silent 6 29454672 C T 19 36 BRCA TCGA-A8-A08S FLOT1 SNP Missense_Mutation 6 30698819 C T 23 92 BRCA TCGA-A8-A08S RIMS1 SNP Missense_Mutation 6 73023340 G T 48 98 BRCA TCGA-A8-A08S HTR1E INS Frame_Shift_Ins 6 87726143 - T 8 83 BRCA TCGA-A8-A08S NYAP1 SNP Missense_Mutation 7 100084731 G A 39 62 BRCA TCGA-A8-A08S CPSF1 SNP Missense_Mutation 8 145625003 C A 20 74 BRCA TCGA-A8-A08S OSGIN2 SNP Missense_Mutation 8 90937095 A G 4 52 BRCA TCGA-A8-A08T PRUNE SNP Missense_Mutation 1 151001299 A G 8 50 BRCA TCGA-A8-A08T KCNT2 SNP Missense_Mutation 1 196311258 C T 29 100 BRCA TCGA-A8-A08T SDE2 SNP Missense_Mutation 1 226173176 C G 32 77 BRCA TCGA-A8-A08T JAK1 SNP Missense_Mutation 1 65301180 T G 62 74 BRCA TCGA-A8-A08T PDZD8 SNP Missense_Mutation 10 119043132 A G 2 59 BRCA TCGA-A8-A08T ANKRD26 SNP Missense_Mutation 10 27326874 C T 20 43 BRCA TCGA-A8-A08T LUZP2 SNP Missense_Mutation 11 25098915 C T 21 49 BRCA TCGA-A8-A08T PCF11 SNP Silent 11 82877733 A G 4 60 BRCA TCGA-A8-A08T TRIM49C SNP Missense_Mutation 11 89774388 G T 43 62 BRCA TCGA-A8-A08T ACVR1B SNP Missense_Mutation 12 52387803 G A 48 100 BRCA TCGA-A8-A08T AHNAK2 SNP Nonsense_Mutation 14 105420635 G A 37 46 BRCA TCGA-A8-A08T TOX4 SNP Nonsense_Mutation 14 21961324 G T 45 86 BRCA TCGA-A8-A08T CBFB DNP Nonsense_Mutation 16 67070595 GC AA 42 62 BRCA TCGA-A8-A08T PSMA8 SNP Silent 18 23731889 G T 39 46 BRCA TCGA-A8-A08T HAUS8 SNP Missense_Mutation 19 17169452 C G 32 53 BRCA TCGA-A8-A08T SHD SNP Missense_Mutation 19 4283129 C T 32 58 BRCA TCGA-A8-A08T LILRA3 SNP Missense_Mutation 19 54802507 C T 31 48 BRCA TCGA-A8-A08T CHPF SNP Silent 2 220404537 G A 47 69 BRCA TCGA-A8-A08T HADHB SNP Missense_Mutation 2 26505908 A T 2 53 BRCA TCGA-A8-A08T RAB11FIP5 SNP Silent 2 73316121 G A 34 67 BRCA TCGA-A8-A08T NCOA3 SNP Missense_Mutation 20 46264773 T G 63 78 BRCA TCGA-A8-A08T APOL1 SNP Nonsense_Mutation 22 36661744 C T 19 29 BRCA TCGA-A8-A08T TCF20 DEL In_Frame_Del 22 42609296 GTT - 36 51 BRCA TCGA-A8-A08T G6PD SNP Silent 23 153761953 A T 10 38 BRCA TCGA-A8-A08T NHS SNP Missense_Mutation 23 17745318 C T 19 100 BRCA TCGA-A8-A08T PLCXD1 SNP Missense_Mutation 23 209780 C T 23 50 BRCA TCGA-A8-A08T HDAC6 SNP Silent 23 48672895 C T 22 54 BRCA TCGA-A8-A08T OPHN1 SNP Missense_Mutation 23 67339171 G C 35 72 BRCA TCGA-A8-A08T BRWD3 SNP Missense_Mutation 23 79932420 T A 54 76 BRCA TCGA-A8-A08T DACH2 SNP Silent 23 86071092 T C 55 55 BRCA TCGA-A8-A08T PCDH19 SNP Missense_Mutation 23 99657715 G A 44 96 BRCA TCGA-A8-A08T SLC9C1 SNP Missense_Mutation 3 111988846 T G 63 62 BRCA TCGA-A8-A08T PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-A8-A08T ZNF639 SNP Missense_Mutation 3 179051631 G T 36 59 BRCA TCGA-A8-A08T C3orf71 SNP Missense_Mutation 3 48956169 C G 29 46 BRCA TCGA-A8-A08T CACNA1D SNP Silent 3 53842707 C T 26 60 BRCA TCGA-A8-A08T POU4F2 SNP Missense_Mutation 4 147561836 G A 39 87 BRCA TCGA-A8-A08T FAT1 SNP Missense_Mutation 4 187525601 G A 39 67 BRCA TCGA-A8-A08T CTNND2 SNP Missense_Mutation 5 11346597 C A 28 63 BRCA TCGA-A8-A08T LPCAT1 SNP Nonsense_Mutation 5 1479762 G A 45 89 BRCA TCGA-A8-A08T PPARGC1B SNP Nonsense_Mutation 5 149212267 C T 23 79 BRCA TCGA-A8-A08T PMS2 SNP Silent 7 6031635 T C 51 48 BRCA TCGA-A8-A08T USP17L2 DNP Missense_Mutation 8 11995399 GT TC 36 49 BRCA TCGA-A8-A08T TSNARE1 SNP Silent 8 143436020 C T 31 45 BRCA TCGA-A8-A08T ANK1 SNP Missense_Mutation 8 41552742 C T 27 82 BRCA TCGA-A8-A08T PRPF4 DEL Frame_Shift_Del 9 116050502 G - 39 94 BRCA TCGA-A8-A08T FAM75C1 SNP Missense_Mutation 9 90538208 G A 36 54 BRCA TCGA-A8-A08X FCRL1 SNP Missense_Mutation 1 157773658 C T 24 17 BRCA TCGA-A8-A08X PLEKHS1 SNP Missense_Mutation 10 115540376 A G 8 62 BRCA TCGA-A8-A08X SVIL SNP Missense_Mutation 10 29813441 C T 27 99 BRCA TCGA-A8-A08X RPP30 SNP Missense_Mutation 10 92654535 A G 12 64 BRCA TCGA-A8-A08X PDS5B SNP Missense_Mutation 13 33233398 A T 4 93 BRCA TCGA-A8-A08X FNDC3A DEL Splice_Site 13 49712942 GTAA - 44 85 BRCA TCGA-A8-A08X POLE2 SNP Missense_Mutation 14 50122403 C T 27 61 BRCA TCGA-A8-A08X VRTN SNP Missense_Mutation 14 74824804 C T 27 56 BRCA TCGA-A8-A08X CRHR1 SNP Missense_Mutation 17 43912159 G C 33 53 BRCA TCGA-A8-A08X TP53 SNP Missense_Mutation 17 7578403 C A 25 84 BRCA TCGA-A8-A08X IL12RB1 SNP Missense_Mutation 19 18186597 G A 41 52 BRCA TCGA-A8-A08X APLP1 SNP Silent 19 36370038 C T 27 37 BRCA TCGA-A8-A08X TET3 SNP Splice_Site 2 74275539 G A 44 98 BRCA TCGA-A8-A08X TEX13B SNP Silent 23 107224730 G A 39 42 BRCA TCGA-A8-A08X STAC SNP Missense_Mutation 3 36534691 G A 39 55 BRCA TCGA-A8-A08X TMEM110-MUSTN1 DEL Frame_Shift_Del 3 52876847 G - 47 80 BRCA TCGA-A8-A08X STAP1 SNP Splice_site 4 68449419 G C 33 78 BRCA TCGA-A8-A08X MAN2A1 SNP Silent 5 109091135 T C 50 55 BRCA TCGA-A8-A08X SERPINE1 SNP Silent 7 100776989 G A 38 47 BRCA TCGA-A8-A08X COX6C SNP Missense_Mutation 8 100899792 C A 31 72 BRCA TCGA-A8-A08X DLC1 SNP Silent 8 12957977 G A 38 54 BRCA TCGA-A8-A08X PAEP SNP Missense_Mutation 9 138456155 C A 17 46 BRCA TCGA-A8-A08Z CELA2B SNP Missense_Mutation 1 15802970 C T 30 72 BRCA TCGA-A8-A08Z CD1E SNP Missense_Mutation 1 158326619 C T 25 63 BRCA TCGA-A8-A08Z LHX9 SNP Silent 1 197889140 C T 27 61 BRCA TCGA-A8-A08Z KIAA1804 SNP Missense_Mutation 1 233518401 A G 11 72 BRCA TCGA-A8-A08Z CLCA2 SNP Missense_Mutation 1 86894174 G A 41 90 BRCA TCGA-A8-A08Z LIPN SNP Nonsense_Mutation 10 90522041 C T 27 62 BRCA TCGA-A8-A08Z PDE6C SNP Missense_Mutation 10 95380689 G T 42 64 BRCA TCGA-A8-A08Z FLI1 SNP Silent 11 128680832 C T 30 46 BRCA TCGA-A8-A08Z RTN4RL2 SNP Missense_Mutation 11 57235333 T A 54 66 BRCA TCGA-A8-A08Z FAT3 SNP Missense_Mutation 11 92087511 A T 8 78 BRCA TCGA-A8-A08Z FAM48A SNP Silent 13 37584782 C T 28 93 BRCA TCGA-A8-A08Z SNP Missense_Mutation 15 102292787 G C 33 59 BRCA TCGA-A8-A08Z TPM1 SNP Missense_Mutation 15 63353074 C G 23 100 BRCA TCGA-A8-A08Z ISLR2 SNP Silent 15 74425131 G A 38 43 BRCA TCGA-A8-A08Z C16orf62 DEL In_Frame_Del 16 19702725 AAC - 1 88 BRCA TCGA-A8-A08Z MYO15A SNP Silent 17 18022963 C T 23 25 BRCA TCGA-A8-A08Z ERBB2 SNP Missense_Mutation 17 37881332 G A 40 99 BRCA TCGA-A8-A08Z NR1H2 SNP Missense_Mutation 19 50882307 C T 19 66 BRCA TCGA-A8-A08Z USP29 SNP Missense_Mutation 19 57640254 C T 29 42 BRCA TCGA-A8-A08Z CIR1 SNP Missense_Mutation 2 175213880 T C 56 69 BRCA TCGA-A8-A08Z RUNX1 INS Frame_Shift_Ins 21 36252856 - T 32 100 BRCA TCGA-A8-A08Z HCFC1 SNP Missense_Mutation 23 153224817 G A 38 63 BRCA TCGA-A8-A08Z RS1 SNP Missense_Mutation 23 18662718 G C 48 62 BRCA TCGA-A8-A08Z TBL1XR1 SNP Splice_Site 3 176771560 C G 18 98 BRCA TCGA-A8-A08Z PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A08Z USP13 SNP Missense_Mutation 3 179478911 G C 37 99 BRCA TCGA-A8-A08Z EIF4A2 SNP Splice_Site 3 186503952 G A 34 92 BRCA TCGA-A8-A08Z ALPK1 SNP Missense_Mutation 4 113303616 G A 40 92 BRCA TCGA-A8-A08Z RFC1 SNP Silent 4 39308302 G A 39 37 BRCA TCGA-A8-A08Z PCDHGA5 SNP Silent 5 140744719 C T 19 42 BRCA TCGA-A8-A08Z MAP3K1 DEL Frame_Shift_Del 5 56177537 TG - 55 86 BRCA TCGA-A8-A08Z MAP3K1 SNP Nonsense_Mutation 5 56178169 C T 29 91 BRCA TCGA-A8-A08Z RAD17 SNP Missense_Mutation 5 68684870 A G 1 71 BRCA TCGA-A8-A08Z WDR67 SNP Silent 8 124132397 C T 29 55 BRCA TCGA-A8-A08Z COL27A1 SNP Silent 9 116930357 C T 27 50 BRCA TCGA-A8-A08Z DAB2IP SNP Silent 9 124519319 G A 36 62 BRCA TCGA-A8-A090 IGSF3 SNP Silent 1 117146250 A G 11 45 BRCA TCGA-A8-A090 PRAMEF14 SNP Silent 1 13669040 G A 37 51 BRCA TCGA-A8-A090 ATAD3B SNP Silent 1 1430987 C T 27 44 BRCA TCGA-A8-A090 OTUD7B SNP Missense_Mutation 1 149931697 C T 32 96 BRCA TCGA-A8-A090 SZRD1 SNP Missense_Mutation 1 16719821 C T 18 94 BRCA TCGA-A8-A090 SEC16B SNP Silent 1 177905472 G A 43 51 BRCA TCGA-A8-A090 MYOM3 SNP Missense_Mutation 1 24432477 C T 19 67 BRCA TCGA-A8-A090 ZCCHC11 SNP Splice_Site 1 52933940 C A 32 90 BRCA TCGA-A8-A090 CYR61 SNP Missense_Mutation 1 86047823 G A 45 100 BRCA TCGA-A8-A090 PNLIPRP1 SNP Missense_Mutation 10 118368603 C T 19 53 BRCA TCGA-A8-A090 MYBPC3 SNP Missense_Mutation 11 47363660 C T 27 82 BRCA TCGA-A8-A090 DENND5A SNP Silent 11 9167307 G A 45 64 BRCA TCGA-A8-A090 ITPKA SNP Missense_Mutation 15 41794697 T C 59 80 BRCA TCGA-A8-A090 SLC5A2 SNP Silent 16 31500276 C A 32 55 BRCA TCGA-A8-A090 LONP2 SNP Missense_Mutation 16 48303987 A T 1 72 BRCA TCGA-A8-A090 CEP95 SNP Missense_Mutation 17 62533802 G A 45 100 BRCA TCGA-A8-A090 TCF4 SNP Splice_site 18 52928697 C T 23 56 BRCA TCGA-A8-A090 FAM124B SNP Missense_Mutation 2 225266148 T C 52 51 BRCA TCGA-A8-A090 SYCP2 SNP Missense_Mutation 20 58467628 T C 52 49 BRCA TCGA-A8-A090 CLDN8 SNP Silent 21 31587665 A G 14 34 BRCA TCGA-A8-A090 KRTAP19-6 SNP Missense_Mutation 21 31913983 A G 9 50 BRCA TCGA-A8-A090 TMPRSS2 SNP Silent 21 42866383 C T 19 48 BRCA TCGA-A8-A090 GSPT2 SNP Silent 23 51488498 C T 32 62 BRCA TCGA-A8-A090 SEMA5B SNP Missense_Mutation 3 122634434 G A 47 74 BRCA TCGA-A8-A090 OPA1 SNP Missense_Mutation 3 193365903 C T 31 82 BRCA TCGA-A8-A090 FLNB INS Frame_Shift_Ins 3 58140575 - G 11 93 BRCA TCGA-A8-A090 DCHS2 SNP Missense_Mutation 4 155253827 A T 4 46 BRCA TCGA-A8-A090 KLHL8 SNP Missense_Mutation 4 88104522 G A 39 97 BRCA TCGA-A8-A090 MED7 SNP Nonsense_Mutation 5 156566070 C A 29 100 BRCA TCGA-A8-A090 BHMT2 SNP Missense_Mutation 5 78379147 C T 27 78 BRCA TCGA-A8-A090 LAMA2 SNP Nonsense_Mutation 6 129712680 C T 31 75 BRCA TCGA-A8-A090 WNT2 SNP Silent 7 116918218 G A 39 46 BRCA TCGA-A8-A090 PDK4 SNP Missense_Mutation 7 95216383 T A 63 89 BRCA TCGA-A8-A090 ANK1 SNP Silent 8 41525809 C T 32 51 BRCA TCGA-A8-A090 CRISPLD1 SNP Missense_Mutation 8 75927084 C T 27 70 BRCA TCGA-A8-A090 PPP1R3B DEL In_Frame_Del 8 8998443 GTAGAT - 44 61 BRCA TCGA-A8-A090 CERCAM SNP Missense_Mutation 9 131186755 G T 48 96 BRCA TCGA-A8-A091 AADACL4 SNP Missense_Mutation 1 12726571 G A 40 59 BRCA TCGA-A8-A091 PLCE1 SNP Silent 10 95791949 G A 40 44 BRCA TCGA-A8-A091 NDUFS3 SNP Nonsense_Mutation 11 47603905 G A 47 99 BRCA TCGA-A8-A091 TRMT112 SNP Missense_Mutation 11 64084586 C T 29 50 BRCA TCGA-A8-A091 SLC22A12 SNP Silent 11 64368333 G C 45 54 BRCA TCGA-A8-A091 PPFIA1 SNP Missense_Mutation 11 70189979 G A 38 100 BRCA TCGA-A8-A091 GPR83 SNP Missense_Mutation 11 94113925 C T 27 98 BRCA TCGA-A8-A091 NCOR2 INS Frame_Shift_Ins 12 124882708 - T 32 66 BRCA TCGA-A8-A091 PRKCB SNP Missense_Mutation 16 24202462 C T 19 81 BRCA TCGA-A8-A091 AXIN1 SNP Silent 16 396381 C T 23 47 BRCA TCGA-A8-A091 CDH1 SNP Missense_Mutation 16 68844139 G A 45 94 BRCA TCGA-A8-A091 ZMYND15 SNP Missense_Mutation 17 4645075 C A 22 80 BRCA TCGA-A8-A091 APOB SNP Silent 2 21236081 G A 44 54 BRCA TCGA-A8-A091 VIL1 SNP Missense_Mutation 2 219294164 G A 37 98 BRCA TCGA-A8-A091 CEP68 SNP Missense_Mutation 2 65298871 C T 27 45 BRCA TCGA-A8-A091 BTBD3 SNP Silent 20 11903291 T C 52 80 BRCA TCGA-A8-A091 ARFGEF2 SNP Missense_Mutation 20 47632847 C T 29 100 BRCA TCGA-A8-A091 PLXNB1 SNP Silent 3 48454157 G A 45 54 BRCA TCGA-A8-A091 DRD5 SNP Silent 4 9784610 C A 30 50 BRCA TCGA-A8-A091 PTPRZ1 SNP Missense_Mutation 7 121651597 C T 31 87 BRCA TCGA-A8-A091 CPSF1 SNP Missense_Mutation 8 145625652 G A 42 96 BRCA TCGA-A8-A091 CHD7 SNP Missense_Mutation 8 61763087 G A 38 60 BRCA TCGA-A8-A091 VCPIP1 DEL In_Frame_Del 8 67578717 ATCGAACAG - 4 71 BRCA TCGA-A8-A092 ARNT SNP Missense_Mutation 1 150801630 A G 4 55 BRCA TCGA-A8-A092 TMOD4 SNP Splice_site 1 151143396 C T 24 87 BRCA TCGA-A8-A092 LELP1 SNP Missense_Mutation 1 153177188 C T 31 76 BRCA TCGA-A8-A092 ADAM15 SNP Silent 1 155029769 C A 22 46 BRCA TCGA-A8-A092 PIGR SNP Missense_Mutation 1 207110830 G C 33 43 BRCA TCGA-A8-A092 ANGEL2 SNP Missense_Mutation 1 213168400 A C 2 89 BRCA TCGA-A8-A092 SUSD4 SNP Missense_Mutation 1 223408322 G A 45 50 BRCA TCGA-A8-A092 PARP1 SNP Missense_Mutation 1 226561965 C G 29 100 BRCA TCGA-A8-A092 EVI5 SNP Missense_Mutation 1 93168985 G C 42 66 BRCA TCGA-A8-A092 PAX2 DEL Frame_Shift_Del 10 102587349 TGCTG - 55 82 BRCA TCGA-A8-A092 WDR11 SNP Missense_Mutation 10 122649430 G C 47 100 BRCA TCGA-A8-A092 MYO3A SNP Missense_Mutation 10 26462851 G T 33 57 BRCA TCGA-A8-A092 CYP26A1 SNP Missense_Mutation 10 94836315 G C 33 54 BRCA TCGA-A8-A092 SORBS1 SNP Nonsense_Mutation 10 97096417 G C 45 58 BRCA TCGA-A8-A092 LCOR SNP Missense_Mutation 10 98714962 G C 43 98 BRCA TCGA-A8-A092 OR51A4 SNP Nonsense_Mutation 11 4967817 T A 63 51 BRCA TCGA-A8-A092 MRGPRD SNP Missense_Mutation 11 68747936 G A 37 47 BRCA TCGA-A8-A092 CDKN1B DEL Frame_Shift_Del 12 12871175 G - 33 57 BRCA TCGA-A8-A092 PIWIL1 SNP Missense_Mutation 12 130847321 C T 19 71 BRCA TCGA-A8-A092 GOLGA3 SNP Missense_Mutation 12 133381492 C A 24 50 BRCA TCGA-A8-A092 SLCO1C1 SNP Silent 12 20893300 G A 45 56 BRCA TCGA-A8-A092 KRT86 SNP Missense_Mutation 12 52699981 G T 36 75 BRCA TCGA-A8-A092 ANO2 SNP Silent 12 5744346 G A 38 32 BRCA TCGA-A8-A092 ING4 SNP Missense_Mutation 12 6762144 C T 29 94 BRCA TCGA-A8-A092 CD69 SNP Missense_Mutation 12 9907797 G C 33 64 BRCA TCGA-A8-A092 TPTE2 SNP Missense_Mutation 13 20048120 C T 19 49 BRCA TCGA-A8-A092 HSPA2 SNP Missense_Mutation 14 65008067 G A 43 99 BRCA TCGA-A8-A092 RBM25 SNP Missense_Mutation 14 73572680 G A 37 83 BRCA TCGA-A8-A092 DICER1 SNP Missense_Mutation 14 95560349 G A 37 100 BRCA TCGA-A8-A092 LRRK1 SNP Missense_Mutation 15 101566209 C T 25 94 BRCA TCGA-A8-A092 RYR3 SNP Missense_Mutation 15 34130404 G A 45 100 BRCA TCGA-A8-A092 UBR1 SNP Missense_Mutation 15 43282235 C T 29 71 BRCA TCGA-A8-A092 FBN1 SNP Silent 15 48818433 G A 47 45 BRCA TCGA-A8-A092 SPPL2A SNP Missense_Mutation 15 51024842 G C 33 70 BRCA TCGA-A8-A092 FAH SNP Missense_Mutation 15 80454614 C T 31 57 BRCA TCGA-A8-A092 HAGH SNP Silent 16 1866966 G A 45 64 BRCA TCGA-A8-A092 TBX6 SNP Missense_Mutation 16 30097589 G A 38 52 BRCA TCGA-A8-A092 UBN1 SNP Silent 16 4920875 G A 33 56 BRCA TCGA-A8-A092 CNTNAP4 SNP Missense_Mutation 16 76572193 G A 34 58 BRCA TCGA-A8-A092 TP53 SNP Missense_Mutation 17 7577568 C T 17 93 BRCA TCGA-A8-A092 GATAD2A SNP Silent 19 19612063 G A 33 65 BRCA TCGA-A8-A092 ZNF682 SNP Silent 19 20117297 C T 32 63 BRCA TCGA-A8-A092 PSG1 SNP Splice_site 19 43373185 C T 31 59 BRCA TCGA-A8-A092 TRPM4 SNP Missense_Mutation 19 49674925 G A 33 90 BRCA TCGA-A8-A092 MUC16 SNP Silent 19 9058646 T C 63 38 BRCA TCGA-A8-A092 MUC16 SNP Missense_Mutation 19 9059401 T C 60 53 BRCA TCGA-A8-A092 ZEB2 SNP Missense_Mutation 2 145147374 C T 31 100 BRCA TCGA-A8-A092 PID1 SNP Splice_Site 2 230020681 C T 28 97 BRCA TCGA-A8-A092 FAM179A SNP Missense_Mutation 2 29259479 G A 38 57 BRCA TCGA-A8-A092 MTIF2 DEL In_Frame_Del 2 55463838 AAC - 1 51 BRCA TCGA-A8-A092 UQCR10 SNP Nonsense_Mutation 22 30163499 C T 29 78 BRCA TCGA-A8-A092 SLC25A14 SNP Splice_site 23 129474326 G T 41 69 BRCA TCGA-A8-A092 FHL1 SNP Missense_Mutation 23 135291482 C T 32 68 BRCA TCGA-A8-A092 DMD SNP Silent 23 32382795 C T 32 58 BRCA TCGA-A8-A092 CYBB SNP Nonsense_Mutation 23 37665784 C T 29 70 BRCA TCGA-A8-A092 CDK16 SNP Missense_Mutation 23 47086098 A C 8 88 BRCA TCGA-A8-A092 DGKK SNP Missense_Mutation 23 50111995 G A 37 49 BRCA TCGA-A8-A092 SATL1 SNP Missense_Mutation 23 84349940 C T 31 47 BRCA TCGA-A8-A092 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A092 WDR82 SNP Nonsense_Mutation 3 52293228 G A 45 100 BRCA TCGA-A8-A092 RAB28 SNP Silent 4 13383134 G A 45 98 BRCA TCGA-A8-A092 HSD17B13 SNP Missense_Mutation 4 88239546 C T 19 67 BRCA TCGA-A8-A092 DMXL1 SNP Missense_Mutation 5 118525430 A G 1 67 BRCA TCGA-A8-A092 LCP2 SNP Silent 5 169720329 A G 8 40 BRCA TCGA-A8-A092 RASGEF1C SNP Missense_Mutation 5 179545842 G A 41 90 BRCA TCGA-A8-A092 SLC30A5 SNP Silent 5 68419204 G C 45 62 BRCA TCGA-A8-A092 CCNB1 DEL Splice_Site 5 68467280 GTAA - 44 99 BRCA TCGA-A8-A092 PREP SNP Missense_Mutation 6 105730425 C T 29 75 BRCA TCGA-A8-A092 HIST1H2BK SNP Silent 6 27114440 C T 29 65 BRCA TCGA-A8-A092 MDC1 SNP Silent 6 30673675 G T 35 56 BRCA TCGA-A8-A092 BMP6 SNP Missense_Mutation 6 7845400 G A 40 54 BRCA TCGA-A8-A092 UBE2J1 INS Frame_Shift_Ins 6 90039635 - G 15 52 BRCA TCGA-A8-A092 FBXL13 SNP Missense_Mutation 7 102603988 C T 32 46 BRCA TCGA-A8-A092 DENND2A SNP Silent 7 140225575 G A 37 25 BRCA TCGA-A8-A092 DNAH11 SNP Silent 7 21730485 C T 29 72 BRCA TCGA-A8-A092 INHBA SNP Silent 7 41729911 G C 33 37 BRCA TCGA-A8-A092 AKAP9 SNP Missense_Mutation 7 91632416 G A 41 46 BRCA TCGA-A8-A092 PDK4 SNP Missense_Mutation 7 95216806 A C 4 70 BRCA TCGA-A8-A092 ZHX2 SNP Missense_Mutation 8 123963911 C G 32 91 BRCA TCGA-A8-A092 ZHX2 SNP Missense_Mutation 8 123964167 C G 29 83 BRCA TCGA-A8-A092 SLC31A1 SNP Missense_Mutation 9 116018517 C T 29 61 BRCA TCGA-A8-A092 GLE1 SNP Nonsense_Mutation 9 131277847 C T 29 78 BRCA TCGA-A8-A092 FNBP1 SNP Splice_Site 9 132689621 C T 32 98 BRCA TCGA-A8-A093 NUDT17 SNP Silent 1 145587798 C T 29 58 BRCA TCGA-A8-A093 RPRD2 SNP Missense_Mutation 1 150444379 G A 39 49 BRCA TCGA-A8-A093 LRRC71 SNP Silent 1 156897417 C A 31 56 BRCA TCGA-A8-A093 SPTA1 SNP Silent 1 158615008 C T 32 50 BRCA TCGA-A8-A093 TARBP1 SNP Splice_site 1 234556558 C T 30 93 BRCA TCGA-A8-A093 RGS7 SNP Missense_Mutation 1 241094034 G A 39 97 BRCA TCGA-A8-A093 OR14C36 SNP Silent 1 248512379 C T 31 26 BRCA TCGA-A8-A093 TSSK3 SNP Missense_Mutation 1 32829406 T C 60 66 BRCA TCGA-A8-A093 OSCP1 SNP Nonsense_Mutation 1 36894016 C A 24 54 BRCA TCGA-A8-A093 KTI12 SNP Missense_Mutation 1 52499148 G A 40 67 BRCA TCGA-A8-A093 HEATR8 SNP Silent 1 55145674 C T 23 44 BRCA TCGA-A8-A093 VENTX SNP Missense_Mutation 10 135053322 G A 46 54 BRCA TCGA-A8-A093 AGAP6 SNP Missense_Mutation 10 51769464 G A 45 76 BRCA TCGA-A8-A093 CDH23 SNP Missense_Mutation 10 73326622 G A 39 98 BRCA TCGA-A8-A093 NDST2 SNP Missense_Mutation 10 75567527 G A 39 100 BRCA TCGA-A8-A093 MAT1A SNP Missense_Mutation 10 82034286 C T 19 81 BRCA TCGA-A8-A093 SORBS1 SNP Silent 10 97106171 C T 32 70 BRCA TCGA-A8-A093 TECTA SNP Silent 11 120989316 G A 35 72 BRCA TCGA-A8-A093 SLC3A2 SNP Missense_Mutation 11 62623767 C T 31 52 BRCA TCGA-A8-A093 FOLR4 SNP Missense_Mutation 11 94039800 G A 39 53 BRCA TCGA-A8-A093 AMOTL1 SNP Missense_Mutation 11 94599217 C T 26 100 BRCA TCGA-A8-A093 KCNJ8 SNP Missense_Mutation 12 21919223 C T 29 100 BRCA TCGA-A8-A093 KIAA0528 SNP Missense_Mutation 12 22671004 G C 47 99 BRCA TCGA-A8-A093 IKZF4 SNP Nonsense_Mutation 12 56428780 C T 29 58 BRCA TCGA-A8-A093 VWF SNP Missense_Mutation 12 6091094 G T 44 64 BRCA TCGA-A8-A093 CD163L1 SNP Missense_Mutation 12 7522120 G A 33 46 BRCA TCGA-A8-A093 RAB20 SNP Missense_Mutation 13 111176031 C G 32 52 BRCA TCGA-A8-A093 SPG20 SNP Splice_site 13 36878500 C T 29 46 BRCA TCGA-A8-A093 FREM2 SNP Missense_Mutation 13 39425221 A G 8 61 BRCA TCGA-A8-A093 AKAP11 SNP Nonsense_Mutation 13 42876457 C G 29 76 BRCA TCGA-A8-A093 STRN3 DEL In_Frame_Del 14 31374670 TAA - 53 67 BRCA TCGA-A8-A093 HEATR5A SNP Silent 14 31763187 T G 54 56 BRCA TCGA-A8-A093 HEATR5A SNP Missense_Mutation 14 31763190 T C 63 54 BRCA TCGA-A8-A093 ARG2 SNP Silent 14 68087661 G A 45 56 BRCA TCGA-A8-A093 LTBP2 SNP Silent 14 74975323 C T 22 46 BRCA TCGA-A8-A093 TGM7 SNP Missense_Mutation 15 43571419 C T 31 76 BRCA TCGA-A8-A093 ABCA3 SNP Silent 16 2345608 G C 47 57 BRCA TCGA-A8-A093 CTU2 SNP Silent 16 88776379 C T 29 68 BRCA TCGA-A8-A093 MAP2K4 SNP Missense_Mutation 17 12028614 G A 45 98 BRCA TCGA-A8-A093 NCOR1 SNP Nonsense_Mutation 17 15989751 G A 45 92 BRCA TCGA-A8-A093 NSF SNP Missense_Mutation 17 44791323 G A 45 97 BRCA TCGA-A8-A093 ITGB3 SNP Missense_Mutation 17 45361815 C T 31 97 BRCA TCGA-A8-A093 DNAH2 SNP Silent 17 7690336 C T 31 50 BRCA TCGA-A8-A093 OSBPL1A SNP Silent 18 21745031 C T 31 36 BRCA TCGA-A8-A093 SMAD2 SNP Missense_Mutation 18 45368278 G C 33 66 BRCA TCGA-A8-A093 LRRC30 SNP Silent 18 7232021 G A 45 47 BRCA TCGA-A8-A093 ZNF441 SNP Missense_Mutation 19 11892414 G C 48 83 BRCA TCGA-A8-A093 ZNF44 SNP Nonsense_Mutation 19 12358544 G A 45 49 BRCA TCGA-A8-A093 CPAMD8 SNP Silent 19 17108122 G T 33 52 BRCA TCGA-A8-A093 NDUFA13 SNP Missense_Mutation 19 19626972 T A 59 45 BRCA TCGA-A8-A093 ZNF540 SNP Missense_Mutation 19 38103583 G A 37 49 BRCA TCGA-A8-A093 ZNF180 SNP Nonsense_Mutation 19 44981989 G A 45 53 BRCA TCGA-A8-A093 CABP5 SNP Silent 19 48537515 G A 41 53 BRCA TCGA-A8-A093 LILRA4 SNP Missense_Mutation 19 54849301 G C 45 51 BRCA TCGA-A8-A093 ZNF548 SNP Missense_Mutation 19 57911242 G C 33 69 BRCA TCGA-A8-A093 ZNF671 SNP Silent 19 58231990 G A 45 49 BRCA TCGA-A8-A093 ADAMTS10 SNP Missense_Mutation 19 8651509 C T 31 61 BRCA TCGA-A8-A093 MUC16 SNP Missense_Mutation 19 9073597 C T 32 60 BRCA TCGA-A8-A093 SLC5A7 SNP Silent 2 108609486 G A 40 32 BRCA TCGA-A8-A093 GPD2 SNP Silent 2 157439307 G A 45 73 BRCA TCGA-A8-A093 FASTKD2 SNP Missense_Mutation 2 207639085 C T 32 89 BRCA TCGA-A8-A093 PIKFYVE SNP Missense_Mutation 2 209163498 C G 32 85 BRCA TCGA-A8-A093 PRKAG3 SNP Missense_Mutation 2 219694753 T G 57 89 BRCA TCGA-A8-A093 ASB1 SNP Silent 2 239353148 C T 29 74 BRCA TCGA-A8-A093 TTC7A SNP Missense_Mutation 2 47202165 G A 33 85 BRCA TCGA-A8-A093 DGUOK SNP Nonsense_Mutation 2 74154071 C T 31 72 BRCA TCGA-A8-A093 PSMF1 SNP Silent 20 1099509 G A 45 57 BRCA TCGA-A8-A093 SLC24A3 SNP Missense_Mutation 20 19677522 G A 45 99 BRCA TCGA-A8-A093 ZNF337 SNP Splice_Site 20 25667103 C G 32 57 BRCA TCGA-A8-A093 NRK SNP Missense_Mutation 23 105139453 G A 36 94 BRCA TCGA-A8-A093 PLS3 SNP Missense_Mutation 23 114844608 G A 45 71 BRCA TCGA-A8-A093 LAMP2 SNP Nonsense_Mutation 23 119589362 G A 45 49 BRCA TCGA-A8-A093 ODZ1 SNP Missense_Mutation 23 123654414 T G 56 90 BRCA TCGA-A8-A093 OCRL SNP Missense_Mutation 23 128701282 G A 41 73 BRCA TCGA-A8-A093 MAGEC3 SNP Missense_Mutation 23 140969422 A G 16 49 BRCA TCGA-A8-A093 FAM120C SNP Missense_Mutation 23 54112178 G A 41 79 BRCA TCGA-A8-A093 NLGN3 SNP Missense_Mutation 23 70367894 G A 38 95 BRCA TCGA-A8-A093 IMPG2 SNP Silent 3 100976551 G A 45 50 BRCA TCGA-A8-A093 CASR SNP Missense_Mutation 3 122003814 G A 37 85 BRCA TCGA-A8-A093 HEG1 SNP Missense_Mutation 3 124746131 C G 32 57 BRCA TCGA-A8-A093 WNT7A SNP Missense_Mutation 3 13860791 C T 31 70 BRCA TCGA-A8-A093 PHC3 SNP Silent 3 169846805 G A 35 49 BRCA TCGA-A8-A093 PIK3CA SNP Missense_Mutation 3 178936094 C A 25 98 BRCA TCGA-A8-A093 MAP3K13 SNP Missense_Mutation 3 185181413 G A 45 100 BRCA TCGA-A8-A093 GLT8D1 SNP Missense_Mutation 3 52730613 T G 64 50 BRCA TCGA-A8-A093 LHFPL4 SNP Silent 3 9547748 G A 37 50 BRCA TCGA-A8-A093 NDST3 SNP Missense_Mutation 4 118975607 C T 24 100 BRCA TCGA-A8-A093 FAT4 SNP Missense_Mutation 4 126370964 G C 33 66 BRCA TCGA-A8-A093 SMARCA5 SNP Nonsense_Mutation 4 144468591 C T 29 100 BRCA TCGA-A8-A093 PRMT10 SNP Nonsense_Mutation 4 148559724 G A 45 62 BRCA TCGA-A8-A093 LRP2BP SNP Silent 4 186291965 G A 37 47 BRCA TCGA-A8-A093 C4orf19 SNP Missense_Mutation 4 37591780 G A 45 82 BRCA TCGA-A8-A093 KLHL5 SNP Missense_Mutation 4 39064478 G A 37 61 BRCA TCGA-A8-A093 USO1 SNP Silent 4 76695834 C G 32 51 BRCA TCGA-A8-A093 FRAS1 SNP Missense_Mutation 4 79351561 G A 37 65 BRCA TCGA-A8-A093 PTPN13 SNP Nonsense_Mutation 4 87720273 G T 33 64 BRCA TCGA-A8-A093 RAP1GDS1 SNP Missense_Mutation 4 99325751 A G 4 89 BRCA TCGA-A8-A093 ADAMTS19 SNP Missense_Mutation 5 129001204 T A 59 75 BRCA TCGA-A8-A093 PCDHB7 SNP Silent 5 140553379 C G 21 44 BRCA TCGA-A8-A093 PCDHB14 SNP Silent 5 140604697 G A 40 43 BRCA TCGA-A8-A093 PCDHGA6 SNP Missense_Mutation 5 140753661 C T 23 52 BRCA TCGA-A8-A093 SOX30 SNP Missense_Mutation 5 157078243 C T 32 60 BRCA TCGA-A8-A093 FBXL7 SNP Silent 5 15928150 G T 37 48 BRCA TCGA-A8-A093 COL10A1 SNP Missense_Mutation 6 116442021 G A 33 55 BRCA TCGA-A8-A093 SERINC1 DEL In_Frame_Del 6 122774991 AAG - 13 53 BRCA TCGA-A8-A093 GPR126 SNP Missense_Mutation 6 142721681 G A 45 54 BRCA TCGA-A8-A093 MSH5 SNP Silent 6 31708270 G A 41 57 BRCA TCGA-A8-A093 PSMB8 SNP Missense_Mutation 6 32809404 G A 37 59 BRCA TCGA-A8-A093 FZD9 SNP Silent 7 72849171 G A 38 49 BRCA TCGA-A8-A093 COL28A1 SNP Missense_Mutation 7 7412809 G A 37 70 BRCA TCGA-A8-A093 SAMD9L SNP Missense_Mutation 7 92764927 C G 29 52 BRCA TCGA-A8-A093 PPP1R9A SNP Nonsense_Mutation 7 94919430 C T 23 66 BRCA TCGA-A8-A093 SLC25A13 SNP Missense_Mutation 7 95820474 C G 32 87 BRCA TCGA-A8-A093 WISP1 SNP Silent 8 134225361 G C 37 59 BRCA TCGA-A8-A093 PTK2B SNP Silent 8 27288485 C T 31 34 BRCA TCGA-A8-A093 ASH2L SNP Silent 8 37967942 C T 32 43 BRCA TCGA-A8-A093 DDHD2 SNP Missense_Mutation 8 38117635 A G 7 66 BRCA TCGA-A8-A093 KAT6A SNP Missense_Mutation 8 41792232 C T 31 96 BRCA TCGA-A8-A093 WWP1 SNP Missense_Mutation 8 87460386 C T 29 100 BRCA TCGA-A8-A093 MUSK SNP Splice_site 9 113547808 G A 33 97 BRCA TCGA-A8-A093 SET SNP Splice_Site 9 131453448 G A 33 79 BRCA TCGA-A8-A093 KCNT1 SNP Missense_Mutation 9 138646986 G A 41 70 BRCA TCGA-A8-A093 NOL6 SNP Missense_Mutation 9 33466347 C T 23 64 BRCA TCGA-A8-A094 PRAMEF10 SNP Silent 1 12954599 C G 29 51 BRCA TCGA-A8-A094 GOLPH3L SNP Silent 1 150621202 T C 52 73 BRCA TCGA-A8-A094 LINGO4 SNP Missense_Mutation 1 151773745 C T 32 74 BRCA TCGA-A8-A094 RPTN SNP Missense_Mutation 1 152129240 T C 56 47 BRCA TCGA-A8-A094 C1orf85 SNP Nonsense_Mutation 1 156264264 C T 30 80 BRCA TCGA-A8-A094 ATP1A4 SNP Missense_Mutation 1 160121908 C G 29 37 BRCA TCGA-A8-A094 ATF6 SNP Nonsense_Mutation 1 161771862 C T 29 70 BRCA TCGA-A8-A094 MAEL SNP Silent 1 166985513 G A 33 74 BRCA TCGA-A8-A094 METTL13 SNP Silent 1 171765635 C T 29 49 BRCA TCGA-A8-A094 GLT25D2 SNP Silent 1 183938428 G C 33 64 BRCA TCGA-A8-A094 FAM5C SNP Missense_Mutation 1 190234086 G A 40 81 BRCA TCGA-A8-A094 ASPM DEL Frame_Shift_Del 1 197070460 TTATT - 56 53 BRCA TCGA-A8-A094 SYT2 SNP Missense_Mutation 1 202571103 C G 30 100 BRCA TCGA-A8-A094 SLC26A9 SNP Missense_Mutation 1 205904876 C G 29 87 BRCA TCGA-A8-A094 SLC26A9 SNP Missense_Mutation 1 205904946 C T 29 87 BRCA TCGA-A8-A094 OBSCN DEL Frame_Shift_Del 1 228491624 AC - 14 60 BRCA TCGA-A8-A094 HEATR1 SNP Missense_Mutation 1 236748383 C T 32 56 BRCA TCGA-A8-A094 ZP4 SNP Splice_site 1 238046042 G A 39 54 BRCA TCGA-A8-A094 MACF1 SNP Missense_Mutation 1 39916733 G T 36 57 BRCA TCGA-A8-A094 CC2D1B SNP Missense_Mutation 1 52824025 G A 39 50 BRCA TCGA-A8-A094 HEATR8 SNP Missense_Mutation 1 55158189 T C 51 68 BRCA TCGA-A8-A094 BRDT SNP Missense_Mutation 1 92443818 G A 33 76 BRCA TCGA-A8-A094 MTF2 SNP Missense_Mutation 1 93599740 C G 30 97 BRCA TCGA-A8-A094 ABCA4 SNP Silent 1 94577116 C T 31 50 BRCA TCGA-A8-A094 UPF2 SNP Silent 10 12071466 T C 62 50 BRCA TCGA-A8-A094 TRDMT1 SNP Missense_Mutation 10 17199723 C G 32 59 BRCA TCGA-A8-A094 ANKRD26 SNP Missense_Mutation 10 27324347 G C 33 67 BRCA TCGA-A8-A094 ZNF33B SNP Missense_Mutation 10 43127865 G A 45 52 BRCA TCGA-A8-A094 MAPK8 SNP Missense_Mutation 10 49618209 C T 31 72 BRCA TCGA-A8-A094 ZWINT SNP Missense_Mutation 10 58119265 G T 46 48 BRCA TCGA-A8-A094 PLA2G12B SNP Silent 10 74702434 G A 41 60 BRCA TCGA-A8-A094 DYDC2 SNP Splice_Site 10 82122706 G C 33 64 BRCA TCGA-A8-A094 FAM190B SNP Missense_Mutation 10 86273469 A T 14 60 BRCA TCGA-A8-A094 PDE3B SNP Silent 11 14865386 A G 9 50 BRCA TCGA-A8-A094 INCENP SNP Missense_Mutation 11 61897510 A G 12 55 BRCA TCGA-A8-A094 TAS2R19 SNP Missense_Mutation 12 11175145 G A 45 46 BRCA TCGA-A8-A094 UNC119B SNP Missense_Mutation 12 121154503 T A 62 93 BRCA TCGA-A8-A094 PPHLN1 SNP Missense_Mutation 12 42781327 C A 32 82 BRCA TCGA-A8-A094 AKAP3 SNP Missense_Mutation 12 4737716 C G 23 49 BRCA TCGA-A8-A094 FAM186B SNP Missense_Mutation 12 49994808 C A 29 51 BRCA TCGA-A8-A094 KCNA1 SNP Missense_Mutation 12 5020629 G A 37 82 BRCA TCGA-A8-A094 NCKAP1L SNP Missense_Mutation 12 54914999 G A 45 95 BRCA TCGA-A8-A094 ITGA7 SNP Missense_Mutation 12 56082684 C G 29 68 BRCA TCGA-A8-A094 ITGA7 SNP Missense_Mutation 12 56096685 G A 37 76 BRCA TCGA-A8-A094 BAZ2A SNP Missense_Mutation 12 57006975 A C 7 77 BRCA TCGA-A8-A094 GLI1 SNP Missense_Mutation 12 57859009 C G 29 61 BRCA TCGA-A8-A094 PIP4K2C SNP Missense_Mutation 12 57994184 G C 33 67 BRCA TCGA-A8-A094 PLEKHG6 SNP Missense_Mutation 12 6436478 G A 33 64 BRCA TCGA-A8-A094 LEMD3 DEL Frame_Shift_Del 12 65564185 C - 26 57 BRCA TCGA-A8-A094 LAG3 SNP Silent 12 6882449 C T 30 53 BRCA TCGA-A8-A094 CDCA3 SNP Missense_Mutation 12 6958758 G A 45 50 BRCA TCGA-A8-A094 USP5 SNP Missense_Mutation 12 6961446 G A 37 69 BRCA TCGA-A8-A094 USP5 SNP Missense_Mutation 12 6967614 G C 33 71 BRCA TCGA-A8-A094 ACSS3 DEL Frame_Shift_Del 12 81568684 GGGGCAGCTTTGGG - 47 67 BRCA TCGA-A8-A094 TMCC3 SNP Missense_Mutation 12 94975947 G C 33 61 BRCA TCGA-A8-A094 UTP14C SNP Missense_Mutation 13 52604942 A C 16 57 BRCA TCGA-A8-A094 AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-A8-A094 OR4N2 SNP Missense_Mutation 14 20296308 A G 2 48 BRCA TCGA-A8-A094 MDGA2 SNP Missense_Mutation 14 47342770 G A 45 94 BRCA TCGA-A8-A094 SAMD4A SNP Missense_Mutation 14 55168944 G A 41 89 BRCA TCGA-A8-A094 EXOC5 SNP Missense_Mutation 14 57714369 G C 33 98 BRCA TCGA-A8-A094 SYNE2 SNP Silent 14 64488685 C T 29 70 BRCA TCGA-A8-A094 SYNE2 SNP Silent 14 64494451 C T 29 54 BRCA TCGA-A8-A094 SYNE2 SNP Missense_Mutation 14 64497798 C A 30 80 BRCA TCGA-A8-A094 UNC79 SNP Missense_Mutation 14 94087993 G A 33 99 BRCA TCGA-A8-A094 SERPINA12 SNP Missense_Mutation 14 94962895 C T 29 98 BRCA TCGA-A8-A094 CASC5 SNP Missense_Mutation 15 40943718 G C 33 58 BRCA TCGA-A8-A094 CAPN3 SNP Splice_site 15 42681294 T C 51 56 BRCA TCGA-A8-A094 FBN1 SNP Missense_Mutation 15 48720661 A T 8 44 BRCA TCGA-A8-A094 DMXL2 SNP Splice_site 15 51778534 C A 18 100 BRCA TCGA-A8-A094 SNX33 SNP Silent 15 75949547 C T 17 54 BRCA TCGA-A8-A094 FANCI SNP Splice_Site 15 89843030 G C 33 99 BRCA TCGA-A8-A094 ABCC1 SNP Silent 16 16108413 C T 29 53 BRCA TCGA-A8-A094 DNAH3 SNP Missense_Mutation 16 21042410 A T 4 92 BRCA TCGA-A8-A094 PLK1 SNP Missense_Mutation 16 23693394 G C 48 61 BRCA TCGA-A8-A094 SEZ6L2 SNP Missense_Mutation 16 29898983 C T 29 81 BRCA TCGA-A8-A094 LOC100288951 SNP Missense_Mutation 16 31173336 C G 32 78 BRCA TCGA-A8-A094 PPL SNP Silent 16 4934651 C T 32 49 BRCA TCGA-A8-A094 CBFB SNP Splice_Site 16 67100703 T C 57 89 BRCA TCGA-A8-A094 FTSJD1 DEL Frame_Shift_Del 16 71317656 T - 55 89 BRCA TCGA-A8-A094 CDH13 SNP Missense_Mutation 16 83704566 T C 62 74 BRCA TCGA-A8-A094 TRIM16 SNP Splice_Site 17 15535029 C G 32 81 BRCA TCGA-A8-A094 SMCR8 SNP Silent 17 18219650 T C 56 55 BRCA TCGA-A8-A094 GH2 SNP Missense_Mutation 17 61958402 G A 40 53 BRCA TCGA-A8-A094 TTYH2 SNP Silent 17 72245191 G A 45 61 BRCA TCGA-A8-A094 TP53 DEL Frame_Shift_Del 17 7578222 TC - 62 47 BRCA TCGA-A8-A094 DNAH2 SNP Missense_Mutation 17 7736526 G C 33 68 BRCA TCGA-A8-A094 SMAD4 DEL Frame_Shift_Del 18 48586275 C - 30 99 BRCA TCGA-A8-A094 ZFP161 SNP Missense_Mutation 18 5291339 C T 24 78 BRCA TCGA-A8-A094 CACNA1A SNP Silent 19 13339552 G A 37 66 BRCA TCGA-A8-A094 IL27RA SNP Missense_Mutation 19 14161686 C T 29 49 BRCA TCGA-A8-A094 MYO9B SNP Missense_Mutation 19 17212831 G A 41 60 BRCA TCGA-A8-A094 LOC100287226 SNP Missense_Mutation 19 22498923 C A 29 80 BRCA TCGA-A8-A094 CEP89 SNP Silent 19 33424376 C T 32 55 BRCA TCGA-A8-A094 HAMP SNP Missense_Mutation 19 35775852 G C 33 52 BRCA TCGA-A8-A094 ZNF45 SNP Nonsense_Mutation 19 44417544 G A 37 54 BRCA TCGA-A8-A094 ZNF350 SNP Nonsense_Mutation 19 52468721 G A 45 51 BRCA TCGA-A8-A094 ZNF415 SNP Missense_Mutation 19 53612688 T C 59 50 BRCA TCGA-A8-A094 ZIM3 SNP Missense_Mutation 19 57647337 G C 33 49 BRCA TCGA-A8-A094 DUXA SNP Missense_Mutation 19 57669826 C T 23 56 BRCA TCGA-A8-A094 ZNF772 SNP Missense_Mutation 19 57985633 G T 34 58 BRCA TCGA-A8-A094 C3 SNP Silent 19 6711199 C T 31 3 BRCA TCGA-A8-A094 OR7D2 SNP Silent 19 9296715 G A 33 29 BRCA TCGA-A8-A094 MRPS9 SNP Splice_Site 2 105665628 G C 33 87 BRCA TCGA-A8-A094 TMEM87B SNP Nonstop_Mutation 2 112873718 T C 59 74 BRCA TCGA-A8-A094 ZRANB3 SNP Missense_Mutation 2 135988439 C A 32 52 BRCA TCGA-A8-A094 SMC6 DEL Frame_Shift_Del 2 17906553 TTCT - 60 83 BRCA TCGA-A8-A094 HECW2 SNP Missense_Mutation 2 197183563 C G 17 66 BRCA TCGA-A8-A094 GLB1L SNP Missense_Mutation 2 220104395 C T 29 100 BRCA TCGA-A8-A094 EPHA4 SNP Missense_Mutation 2 222365820 G C 33 100 BRCA TCGA-A8-A094 FAM179A SNP Missense_Mutation 2 29268249 G T 44 46 BRCA TCGA-A8-A094 C2orf71 SNP Missense_Mutation 2 29296746 C T 32 60 BRCA TCGA-A8-A094 NLRC4 SNP Silent 2 32475388 G A 40 32 BRCA TCGA-A8-A094 CCT4 SNP Silent 2 62104097 C T 32 62 BRCA TCGA-A8-A094 SLC4A5 SNP Missense_Mutation 2 74452135 G C 33 50 BRCA TCGA-A8-A094 C2orf68 SNP Nonsense_Mutation 2 85836560 G A 45 75 BRCA TCGA-A8-A094 NCOA6 SNP Missense_Mutation 20 33345176 G C 45 86 BRCA TCGA-A8-A094 SAMHD1 SNP Missense_Mutation 20 35555629 C G 29 100 BRCA TCGA-A8-A094 STK4 SNP Missense_Mutation 20 43703693 G C 35 85 BRCA TCGA-A8-A094 PIGT SNP Silent 20 44045206 G A 36 75 BRCA TCGA-A8-A094 CHGB SNP Missense_Mutation 20 5903764 G A 35 56 BRCA TCGA-A8-A094 DYRK1A SNP Missense_Mutation 21 38884518 C T 32 97 BRCA TCGA-A8-A094 PARVB SNP Silent 22 44514987 C T 24 60 BRCA TCGA-A8-A094 TBC1D22A SNP Missense_Mutation 22 47308069 A G 8 49 BRCA TCGA-A8-A094 GABRE SNP Missense_Mutation 23 151130931 C T 27 80 BRCA TCGA-A8-A094 PHKA2 SNP Missense_Mutation 23 18913260 C T 31 56 BRCA TCGA-A8-A094 MBTPS2 SNP Silent 23 21871596 C G 30 49 BRCA TCGA-A8-A094 FAM48B2 SNP Missense_Mutation 23 24329586 G A 45 51 BRCA TCGA-A8-A094 PIM2 SNP Silent 23 48775085 C G 30 53 BRCA TCGA-A8-A094 KDM5C SNP Missense_Mutation 23 53240703 T G 60 53 BRCA TCGA-A8-A094 ITIH6 SNP Missense_Mutation 23 54781528 C T 30 48 BRCA TCGA-A8-A094 HDHD1 SNP Missense_Mutation 23 7023816 C T 28 63 BRCA TCGA-A8-A094 SIDT1 SNP Missense_Mutation 3 113302310 G C 33 84 BRCA TCGA-A8-A094 ROPN1 SNP Missense_Mutation 3 123694377 C T 32 77 BRCA TCGA-A8-A094 WNT7A SNP Missense_Mutation 3 13860570 C A 17 96 BRCA TCGA-A8-A094 BTD SNP Missense_Mutation 3 15686759 C G 32 56 BRCA TCGA-A8-A094 SMC4 SNP Missense_Mutation 3 160119723 G C 45 72 BRCA TCGA-A8-A094 TRNT1 SNP Missense_Mutation 3 3189137 T C 61 89 BRCA TCGA-A8-A094 ANO10 SNP Missense_Mutation 3 43640099 C G 29 91 BRCA TCGA-A8-A094 BSN SNP Nonsense_Mutation 3 49695519 A T 9 92 BRCA TCGA-A8-A094 PDE5A SNP Silent 4 120432238 A G 12 51 BRCA TCGA-A8-A094 SLAIN2 SNP Missense_Mutation 4 48371964 T C 60 70 BRCA TCGA-A8-A094 TMPRSS11A SNP Missense_Mutation 4 68784731 C G 29 44 BRCA TCGA-A8-A094 MRPL1 SNP Missense_Mutation 4 78873708 C T 30 59 BRCA TCGA-A8-A094 FGF5 SNP Silent 4 81188146 C T 24 51 BRCA TCGA-A8-A094 LIN54 SNP Missense_Mutation 4 83849430 T C 62 94 BRCA TCGA-A8-A094 PCDHB4 SNP Missense_Mutation 5 140503220 G A 38 53 BRCA TCGA-A8-A094 PCDHB12 SNP Missense_Mutation 5 140588724 G C 43 96 BRCA TCGA-A8-A094 PCDHGB5 SNP Silent 5 140779191 T C 56 52 BRCA TCGA-A8-A094 PCDHGB6 SNP Missense_Mutation 5 140789141 G A 40 47 BRCA TCGA-A8-A094 PCDHGA10 SNP Silent 5 140795061 C A 32 61 BRCA TCGA-A8-A094 LARP1 SNP Missense_Mutation 5 154185485 G T 48 100 BRCA TCGA-A8-A094 ADAMTS12 SNP Missense_Mutation 5 33576371 C T 32 48 BRCA TCGA-A8-A094 SPEF2 SNP Silent 5 35740104 G A 45 52 BRCA TCGA-A8-A094 ITGA2 SNP Silent 5 52363035 C T 29 52 BRCA TCGA-A8-A094 BDP1 SNP Missense_Mutation 5 70806172 G A 45 53 BRCA TCGA-A8-A094 ARRDC3 SNP Missense_Mutation 5 90669934 C T 29 100 BRCA TCGA-A8-A094 WASF1 SNP Missense_Mutation 6 110426631 G T 47 92 BRCA TCGA-A8-A094 UTRN SNP Missense_Mutation 6 144835162 G C 33 72 BRCA TCGA-A8-A094 DSP SNP Nonsense_Mutation 6 7567629 C T 29 100 BRCA TCGA-A8-A094 FBXL13 SNP Missense_Mutation 7 102665560 C T 29 51 BRCA TCGA-A8-A094 FAM131B SNP Silent 7 143054099 T G 59 49 BRCA TCGA-A8-A094 MLL3 DEL Frame_Shift_Del 7 151859301 AGATGACTTTT - 3 49 BRCA TCGA-A8-A094 RBM33 SNP Missense_Mutation 7 155473535 A G 11 66 BRCA TCGA-A8-A094 MPP6 SNP Missense_Mutation 7 24681452 G A 33 100 BRCA TCGA-A8-A094 EGFR SNP Missense_Mutation 7 55221800 G A 37 59 BRCA TCGA-A8-A094 CCT6A SNP Missense_Mutation 7 56128610 G A 45 99 BRCA TCGA-A8-A094 KIAA1324L SNP Missense_Mutation 7 86547849 G C 33 97 BRCA TCGA-A8-A094 CCDC132 SNP Missense_Mutation 7 92979203 G T 36 87 BRCA TCGA-A8-A094 PPP1R9A SNP Missense_Mutation 7 94917854 G A 45 98 BRCA TCGA-A8-A094 RIMS2 SNP Missense_Mutation 8 105010426 C G 32 80 BRCA TCGA-A8-A094 SYBU SNP Silent 8 110590147 C G 29 60 BRCA TCGA-A8-A094 COL14A1 SNP Missense_Mutation 8 121180436 G C 33 60 BRCA TCGA-A8-A094 FAM91A1 SNP Missense_Mutation 8 124799973 C G 32 75 BRCA TCGA-A8-A094 MYOM2 SNP Missense_Mutation 8 2000312 G C 45 44 BRCA TCGA-A8-A094 EGR3 SNP Silent 8 22548604 C T 19 52 BRCA TCGA-A8-A094 NUGGC SNP Missense_Mutation 8 27886887 C G 29 77 BRCA TCGA-A8-A094 CSMD1 SNP Silent 8 3245053 C T 30 51 BRCA TCGA-A8-A094 TTI2 SNP Missense_Mutation 8 33361052 T A 54 73 BRCA TCGA-A8-A094 MOS SNP Missense_Mutation 8 57025782 C G 32 97 BRCA TCGA-A8-A094 RRS1 DEL In_Frame_Del 8 67342428 AGG - 3 61 BRCA TCGA-A8-A094 TMEM67 SNP Missense_Mutation 8 94784835 G C 33 86 BRCA TCGA-A8-A094 GRIN3A SNP Silent 9 104341570 A G 1 58 BRCA TCGA-A8-A094 RC3H2 SNP Nonsense_Mutation 9 125618153 G C 45 84 BRCA TCGA-A8-A094 ZBTB6 SNP Nonsense_Mutation 9 125673289 G A 45 86 BRCA TCGA-A8-A094 ZBTB6 SNP Missense_Mutation 9 125673973 G C 33 51 BRCA TCGA-A8-A094 ZBTB6 SNP Missense_Mutation 9 125674188 G C 41 98 BRCA TCGA-A8-A094 ABL1 SNP Missense_Mutation 9 133753849 T C 61 90 BRCA TCGA-A8-A094 SETX SNP Missense_Mutation 9 135201859 T G 64 62 BRCA TCGA-A8-A094 CACNA1B SNP Missense_Mutation 9 140880937 C G 32 68 BRCA TCGA-A8-A094 PTPRD SNP Missense_Mutation 9 8449827 C G 32 98 BRCA TCGA-A8-A094 LOC286238 SNP Missense_Mutation 9 91262447 A C 13 49 BRCA TCGA-A8-A094 ERCC6L2 SNP Silent 9 98669392 C G 32 51 BRCA TCGA-A8-A095 PRMT6 SNP Missense_Mutation 1 107599767 G C 33 80 BRCA TCGA-A8-A095 WDR3 SNP Missense_Mutation 1 118495209 C T 29 100 BRCA TCGA-A8-A095 NBPF7 SNP Missense_Mutation 1 120384173 C G 24 53 BRCA TCGA-A8-A095 S100A1 SNP Missense_Mutation 1 153603056 C T 31 92 BRCA TCGA-A8-A095 FCRL4 SNP Silent 1 157557674 G A 45 41 BRCA TCGA-A8-A095 MR1 SNP Missense_Mutation 1 181024397 G A 37 45 BRCA TCGA-A8-A095 UBR4 SNP Missense_Mutation 1 19430614 C T 30 78 BRCA TCGA-A8-A095 ARID4B SNP Missense_Mutation 1 235357486 G C 33 89 BRCA TCGA-A8-A095 KIF26B SNP Missense_Mutation 1 245530320 C T 31 83 BRCA TCGA-A8-A095 TRNAU1AP SNP Nonsense_Mutation 1 28880170 G T 45 87 BRCA TCGA-A8-A095 GPBP1L1 SNP Missense_Mutation 1 46108107 C G 30 70 BRCA TCGA-A8-A095 JAK1 SNP Missense_Mutation 1 65313316 C A 21 96 BRCA TCGA-A8-A095 DNAJC11 SNP Missense_Mutation 1 6727814 C G 32 63 BRCA TCGA-A8-A095 CTH SNP Nonsense_Mutation 1 70890019 G T 45 52 BRCA TCGA-A8-A095 ZNHIT6 SNP Silent 1 86123612 C T 29 83 BRCA TCGA-A8-A095 PNLIPRP1 SNP Missense_Mutation 10 118352049 G A 46 74 BRCA TCGA-A8-A095 FAM188A SNP Missense_Mutation 10 15828635 C T 29 87 BRCA TCGA-A8-A095 ARHGAP21 SNP Missense_Mutation 10 24874831 C T 29 65 BRCA TCGA-A8-A095 CCDC7 SNP Silent 10 32856783 A G 10 58 BRCA TCGA-A8-A095 ZFAND4 SNP Silent 10 46122005 C T 29 44 BRCA TCGA-A8-A095 VSTM4 SNP Missense_Mutation 10 50311891 G C 41 52 BRCA TCGA-A8-A095 IPMK SNP Missense_Mutation 10 59997544 C G 29 56 BRCA TCGA-A8-A095 TNKS1BP1 SNP Missense_Mutation 11 57088085 G A 37 58 BRCA TCGA-A8-A095 OR52N2 SNP Silent 11 5841832 C T 29 53 BRCA TCGA-A8-A095 OSBP SNP Missense_Mutation 11 59367985 G C 33 85 BRCA TCGA-A8-A095 DAK SNP Silent 11 61106623 C T 29 51 BRCA TCGA-A8-A095 RBM14 SNP Missense_Mutation 11 66391892 C G 32 68 BRCA TCGA-A8-A095 RBM14 SNP Missense_Mutation 11 66392021 C G 32 72 BRCA TCGA-A8-A095 HECTD4 SNP Missense_Mutation 12 112691858 C G 32 97 BRCA TCGA-A8-A095 GLT1D1 SNP Silent 12 129383811 G A 35 74 BRCA TCGA-A8-A095 SLCO1A2 SNP Silent 12 21453307 C T 32 50 BRCA TCGA-A8-A095 GPD1 SNP Missense_Mutation 12 50503243 G A 37 60 BRCA TCGA-A8-A095 LIMA1 SNP Missense_Mutation 12 50598427 C G 30 82 BRCA TCGA-A8-A095 ENSG00000226997 DEL Frame_Shift_Del 12 57390859 AC - 2 52 BRCA TCGA-A8-A095 SACS SNP Missense_Mutation 13 23911264 G C 45 98 BRCA TCGA-A8-A095 RB1 SNP Nonsense_Mutation 13 49050906 G T 45 96 BRCA TCGA-A8-A095 WDFY2 SNP Missense_Mutation 13 52329500 G A 45 82 BRCA TCGA-A8-A095 IGHV3-6 SNP Silent 14 106829998 G C 41 50 BRCA TCGA-A8-A095 CASC5 SNP Silent 15 40917571 G A 45 56 BRCA TCGA-A8-A095 TP53BP1 SNP Missense_Mutation 15 43724569 C G 29 23 BRCA TCGA-A8-A095 CGNL1 SNP Silent 15 57746010 G A 45 55 BRCA TCGA-A8-A095 CA12 SNP Silent 15 63638802 G A 45 28 BRCA TCGA-A8-A095 LMAN1L SNP Missense_Mutation 15 75116744 C T 31 52 BRCA TCGA-A8-A095 PRKCB SNP Silent 16 24043543 C T 29 53 BRCA TCGA-A8-A095 FBXL19 SNP Missense_Mutation 16 30941589 G A 37 75 BRCA TCGA-A8-A095 N4BP1 SNP Missense_Mutation 16 48576901 C G 32 70 BRCA TCGA-A8-A095 PPL SNP Silent 16 4954017 G T 37 63 BRCA TCGA-A8-A095 PRPF8 SNP Missense_Mutation 17 1580966 C A 26 98 BRCA TCGA-A8-A095 ASPA SNP Nonsense_Mutation 17 3392582 C T 29 62 BRCA TCGA-A8-A095 KRT35 SNP Silent 17 39637326 G T 39 40 BRCA TCGA-A8-A095 SLC2A4 SNP Splice_site 17 7186564 G C 41 81 BRCA TCGA-A8-A095 RNF213 SNP Missense_Mutation 17 78321847 G A 43 53 BRCA TCGA-A8-A095 RPH3AL SNP Nonsense_Mutation 17 96983 G A 39 58 BRCA TCGA-A8-A095 ZNF443 SNP Missense_Mutation 19 12541839 G C 45 83 BRCA TCGA-A8-A095 ZNF43 SNP Missense_Mutation 19 21990459 C G 32 50 BRCA TCGA-A8-A095 TJP3 SNP Missense_Mutation 19 3734343 C T 31 75 BRCA TCGA-A8-A095 FCGBP SNP Missense_Mutation 19 40424194 C T 26 53 BRCA TCGA-A8-A095 CREB3L3 SNP Missense_Mutation 19 4154928 C G 31 39 BRCA TCGA-A8-A095 ZNF616 SNP Missense_Mutation 19 52619379 G C 41 27 BRCA TCGA-A8-A095 DUXA SNP Missense_Mutation 19 57672085 G C 45 50 BRCA TCGA-A8-A095 ZNF324 SNP Silent 19 58982714 C T 19 50 BRCA TCGA-A8-A095 GTF2F1 SNP Silent 19 6380409 G C 47 58 BRCA TCGA-A8-A095 ZNF266 SNP Silent 19 9524014 G A 45 53 BRCA TCGA-A8-A095 ZNF266 SNP Missense_Mutation 19 9524258 G T 41 47 BRCA TCGA-A8-A095 SCN9A SNP Missense_Mutation 2 167138306 G C 45 76 BRCA TCGA-A8-A095 TTN SNP Missense_Mutation 2 179467114 G C 33 60 BRCA TCGA-A8-A095 GPR1 SNP Missense_Mutation 2 207041528 A T 12 61 BRCA TCGA-A8-A095 NCL SNP Missense_Mutation 2 232326353 C T 29 62 BRCA TCGA-A8-A095 PER2 SNP Silent 2 239164479 G A 45 45 BRCA TCGA-A8-A095 LTBP1 SNP Silent 2 33590449 G C 45 57 BRCA TCGA-A8-A095 BCL11A SNP Silent 2 60689483 G A 40 69 BRCA TCGA-A8-A095 NDUFAF5 SNP Missense_Mutation 20 13797576 G A 45 90 BRCA TCGA-A8-A095 SIRPG SNP Missense_Mutation 20 1617134 C T 19 43 BRCA TCGA-A8-A095 TMEM50B SNP Missense_Mutation 21 34832793 G A 45 67 BRCA TCGA-A8-A095 LCA5L SNP Missense_Mutation 21 40792688 G C 45 52 BRCA TCGA-A8-A095 UBASH3A SNP Silent 21 43862566 C G 29 65 BRCA TCGA-A8-A095 EIF4ENIF1 SNP Missense_Mutation 22 31839047 G A 37 81 BRCA TCGA-A8-A095 MAGEB1 SNP Silent 23 30269534 G A 45 53 BRCA TCGA-A8-A095 AKAP4 SNP Silent 23 49958365 G A 45 47 BRCA TCGA-A8-A095 WNK3 SNP Missense_Mutation 23 54263737 G C 33 61 BRCA TCGA-A8-A095 KAL1 SNP Silent 23 8553429 G A 40 43 BRCA TCGA-A8-A095 PIK3CA SNP Missense_Mutation 3 178938934 G A 45 98 BRCA TCGA-A8-A095 PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA TCGA-A8-A095 SFMBT1 SNP Nonsense_Mutation 3 52947576 G T 45 100 BRCA TCGA-A8-A095 SEC24B SNP Nonsense_Mutation 4 110460811 C T 29 96 BRCA TCGA-A8-A095 TIFA SNP Missense_Mutation 4 113199522 C G 32 56 BRCA TCGA-A8-A095 KLB SNP Silent 4 39448147 C T 32 100 BRCA TCGA-A8-A095 KIT SNP Missense_Mutation 4 55561727 C G 30 76 BRCA TCGA-A8-A095 KDR SNP Missense_Mutation 4 55953837 G T 41 94 BRCA TCGA-A8-A095 LIN54 SNP Missense_Mutation 4 83905831 G C 33 79 BRCA TCGA-A8-A095 TIGD6 SNP Silent 5 149375540 C T 29 49 BRCA TCGA-A8-A095 KIF4B SNP Missense_Mutation 5 154395982 G A 41 77 BRCA TCGA-A8-A095 SLC34A1 SNP Missense_Mutation 5 176821143 A C 2 79 BRCA TCGA-A8-A095 ROS1 SNP Missense_Mutation 6 117709171 C T 29 55 BRCA TCGA-A8-A095 MYB SNP Missense_Mutation 6 135515566 G A 37 100 BRCA TCGA-A8-A095 SYNE1 SNP Nonsense_Mutation 6 152453309 G C 45 98 BRCA TCGA-A8-A095 SYNE1 SNP Silent 6 152454417 A G 10 57 BRCA TCGA-A8-A095 TBC1D22B SNP Missense_Mutation 6 37280745 G A 37 95 BRCA TCGA-A8-A095 DST SNP Missense_Mutation 6 56485062 T C 64 54 BRCA TCGA-A8-A095 PHF3 SNP Missense_Mutation 6 64423044 C T 30 77 BRCA TCGA-A8-A095 COL12A1 SNP Missense_Mutation 6 75875459 A T 12 88 BRCA TCGA-A8-A095 MDN1 SNP Missense_Mutation 6 90385248 C A 29 52 BRCA TCGA-A8-A095 MDN1 SNP Silent 6 90400449 C T 29 62 BRCA TCGA-A8-A095 SRRT SNP Missense_Mutation 7 100485916 C T 30 75 BRCA TCGA-A8-A095 METTL2B SNP Missense_Mutation 7 128133877 C G 24 71 BRCA TCGA-A8-A095 CALD1 SNP Missense_Mutation 7 134625906 C G 31 54 BRCA TCGA-A8-A095 PKHD1L1 SNP Missense_Mutation 8 110457083 A G 10 69 BRCA TCGA-A8-A095 KCNU1 SNP Missense_Mutation 8 36780034 G A 45 60 BRCA TCGA-A8-A095 SNTG1 SNP Silent 8 51569549 G A 45 45 BRCA TCGA-A8-A095 SETX SNP Splice_Site 9 135211682 C A 18 90 BRCA TCGA-A8-A095 VCP SNP Missense_Mutation 9 35065250 C G 32 100 BRCA TCGA-A8-A095 KIAA1432 SNP Missense_Mutation 9 5763849 C T 32 99 BRCA TCGA-A8-A096 UBE4B SNP Missense_Mutation 1 10231364 G A 38 100 BRCA TCGA-A8-A096 PRRX1 SNP Missense_Mutation 1 170695530 C T 27 93 BRCA TCGA-A8-A096 SIPA1L2 SNP Missense_Mutation 1 232651059 T G 56 58 BRCA TCGA-A8-A096 TTC4 SNP Silent 1 55183238 A G 8 0 BRCA TCGA-A8-A096 KSR2 SNP Splice_site 12 117914399 G A 38 55 BRCA TCGA-A8-A096 TRHDE SNP Missense_Mutation 12 72866866 C T 19 99 BRCA TCGA-A8-A096 SACS SNP Missense_Mutation 13 23912580 G C 48 87 BRCA TCGA-A8-A096 SYNE2 SNP Missense_Mutation 14 64625506 A G 2 50 BRCA TCGA-A8-A096 UNC79 SNP Missense_Mutation 14 94088964 G T 33 60 BRCA TCGA-A8-A096 ADAMTSL3 SNP Missense_Mutation 15 84700109 G A 40 26 BRCA TCGA-A8-A096 CNGB1 SNP Silent 16 57951250 G A 44 64 BRCA TCGA-A8-A096 CBFB SNP Missense_Mutation 16 67100664 G A 44 97 BRCA TCGA-A8-A096 TRPV3 SNP Silent 17 3431412 C T 27 48 BRCA TCGA-A8-A096 HELZ SNP Missense_Mutation 17 65157188 A C 8 90 BRCA TCGA-A8-A096 MYO5B SNP Missense_Mutation 18 47432808 G A 39 60 BRCA TCGA-A8-A096 OR10H2 SNP Silent 19 15839336 G A 39 43 BRCA TCGA-A8-A096 SLC17A7 INS Frame_Shift_Ins 19 49938068 - A 49 84 BRCA TCGA-A8-A096 LRP2 SNP Silent 2 170030640 G A 38 49 BRCA TCGA-A8-A096 RAPGEF4 SNP Splice_Site 2 173891808 G C 34 98 BRCA TCGA-A8-A096 PDE11A SNP Missense_Mutation 2 178762823 G A 40 88 BRCA TCGA-A8-A096 STK11IP SNP Missense_Mutation 2 220471821 C T 19 88 BRCA TCGA-A8-A096 IGSF1 SNP Missense_Mutation 23 130410201 A T 11 70 BRCA TCGA-A8-A096 WNK3 SNP Missense_Mutation 23 54275401 A G 12 54 BRCA TCGA-A8-A096 OTUD6A SNP Missense_Mutation 23 69282426 G A 37 69 BRCA TCGA-A8-A096 TBL1XR1 DEL Frame_Shift_Del 3 176769296 TA - 53 57 BRCA TCGA-A8-A096 TBL1XR1 INS Frame_Shift_Ins 3 176769299 - TG 15 46 BRCA TCGA-A8-A096 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A096 BSN SNP Missense_Mutation 3 49694979 G A 40 73 BRCA TCGA-A8-A096 CSNK1G3 SNP Splice_site 5 122911423 A G 12 75 BRCA TCGA-A8-A096 HIST1H1C SNP Missense_Mutation 6 26056062 T C 61 90 BRCA TCGA-A8-A096 PRPF4B SNP Missense_Mutation 6 4049302 A G 2 77 BRCA TCGA-A8-A096 SNP Missense_Mutation 7 102016298 T G 59 58 BRCA TCGA-A8-A096 GRHL2 SNP Splice_Site 8 102571041 G T 44 91 BRCA TCGA-A8-A096 KIAA1984 INS Frame_Shift_Ins 9 139701290 - C 7 45 BRCA TCGA-A8-A097 KCNC4 SNP Missense_Mutation 1 110766559 C T 22 49 BRCA TCGA-A8-A097 AMPD1 SNP Missense_Mutation 1 115223067 G C 43 100 BRCA TCGA-A8-A097 WDR3 SNP Silent 1 118494625 C T 23 58 BRCA TCGA-A8-A097 TCHHL1 SNP Missense_Mutation 1 152058564 C T 22 49 BRCA TCGA-A8-A097 TRNAU1AP SNP Silent 1 28904118 A T 7 35 BRCA TCGA-A8-A097 PEF1 SNP Missense_Mutation 1 32098853 G C 45 80 BRCA TCGA-A8-A097 COL16A1 SNP Missense_Mutation 1 32149769 C A 21 84 BRCA TCGA-A8-A097 PHF13 SNP Missense_Mutation 1 6681554 A C 6 88 BRCA TCGA-A8-A097 PITRM1 SNP Missense_Mutation 10 3189822 G A 46 100 BRCA TCGA-A8-A097 AKR1E2 SNP Silent 10 4884037 G A 36 61 BRCA TCGA-A8-A097 FAM208B SNP Missense_Mutation 10 5800903 T C 51 82 BRCA TCGA-A8-A097 FAM190B SNP Missense_Mutation 10 86259685 C A 22 83 BRCA TCGA-A8-A097 MMP3 SNP Missense_Mutation 11 102712906 G T 48 49 BRCA TCGA-A8-A097 DPAGT1 DEL Frame_Shift_Del 11 118967894 G - 47 56 BRCA TCGA-A8-A097 MICAL2 SNP Nonsense_Mutation 11 12265628 C G 29 84 BRCA TCGA-A8-A097 PRMT3 SNP Missense_Mutation 11 20529900 C T 19 78 BRCA TCGA-A8-A097 ZFPL1 SNP Silent 11 64854242 C T 32 81 BRCA TCGA-A8-A097 OAS3 SNP Missense_Mutation 12 113388650 G T 35 43 BRCA TCGA-A8-A097 MRPL51 SNP Missense_Mutation 12 6601615 G A 43 100 BRCA TCGA-A8-A097 PTPRB SNP Missense_Mutation 12 70954712 G T 43 96 BRCA TCGA-A8-A097 NEK5 SNP Missense_Mutation 13 52701610 C A 20 48 BRCA TCGA-A8-A097 PLEKHD1 SNP Splice_site 14 69967295 G T 42 88 BRCA TCGA-A8-A097 SERPINA1 SNP Missense_Mutation 14 94849571 G C 42 51 BRCA TCGA-A8-A097 PAPOLA SNP Silent 14 96997870 G T 37 84 BRCA TCGA-A8-A097 LOC728047 SNP Silent 15 32743817 T C 60 49 BRCA TCGA-A8-A097 ZSCAN29 SNP Silent 15 43658336 A G 7 56 BRCA TCGA-A8-A097 DMXL2 SNP Missense_Mutation 15 51783884 T C 52 88 BRCA TCGA-A8-A097 DNAH3 SNP Silent 16 21011634 C T 32 71 BRCA TCGA-A8-A097 CREBBP SNP Silent 16 3779642 C G 25 50 BRCA TCGA-A8-A097 WWP2 SNP Missense_Mutation 16 69921986 G A 40 70 BRCA TCGA-A8-A097 NLRP1 SNP Missense_Mutation 17 5436639 T C 52 50 BRCA TCGA-A8-A097 TP53 DEL Frame_Shift_Del 17 7577531 G - 47 55 BRCA TCGA-A8-A097 GUCY2D SNP Silent 17 7912874 C T 30 56 BRCA TCGA-A8-A097 KLHL14 SNP Missense_Mutation 18 30267172 C G 28 96 BRCA TCGA-A8-A097 SYT4 SNP Missense_Mutation 18 40853980 A T 2 60 BRCA TCGA-A8-A097 PHLPP1 SNP Nonsense_Mutation 18 60384462 G T 41 89 BRCA TCGA-A8-A097 DNMT1 SNP Silent 19 10250460 G T 41 44 BRCA TCGA-A8-A097 CLPTM1 SNP Missense_Mutation 19 45490564 C G 32 77 BRCA TCGA-A8-A097 KLK2 SNP Missense_Mutation 19 51381748 C T 24 87 BRCA TCGA-A8-A097 NLRP9 SNP Silent 19 56243391 A G 9 48 BRCA TCGA-A8-A097 IL1RL1 SNP Silent 2 102964505 C A 21 44 BRCA TCGA-A8-A097 TTN SNP Missense_Mutation 2 179425922 C T 29 100 BRCA TCGA-A8-A097 TTN SNP Missense_Mutation 2 179599535 A T 3 93 BRCA TCGA-A8-A097 DNAJC10 SNP Silent 2 183597233 G A 45 60 BRCA TCGA-A8-A097 BIRC6 SNP Missense_Mutation 2 32824821 C A 30 100 BRCA TCGA-A8-A097 MRPS5 SNP Missense_Mutation 2 95767455 C T 30 64 BRCA TCGA-A8-A097 SGK2 SNP Silent 20 42204866 G A 38 33 BRCA TCGA-A8-A097 KRTAP10-6 SNP Silent 21 46011700 G A 43 54 BRCA TCGA-A8-A097 AP1B1 SNP Missense_Mutation 22 29726496 G C 46 55 BRCA TCGA-A8-A097 IL13RA2 SNP Missense_Mutation 23 114242507 G T 48 43 BRCA TCGA-A8-A097 CXorf56 SNP Missense_Mutation 23 118694273 T G 56 82 BRCA TCGA-A8-A097 PRRG3 SNP Silent 23 150869481 C A 23 37 BRCA TCGA-A8-A097 TMEM27 SNP Missense_Mutation 23 15657865 C T 23 82 BRCA TCGA-A8-A097 ZNF630 SNP Silent 23 47920304 A G 8 49 BRCA TCGA-A8-A097 CACNA1F SNP Missense_Mutation 23 49065756 T G 54 57 BRCA TCGA-A8-A097 LOC100288024 SNP Missense_Mutation 23 53221858 C A 21 58 BRCA TCGA-A8-A097 SLC16A2 INS Frame_Shift_Ins 23 73641302 - G 11 57 BRCA TCGA-A8-A097 PCYT1A SNP Missense_Mutation 3 195968873 C A 26 52 BRCA TCGA-A8-A097 LRRN1 SNP Missense_Mutation 3 3887664 T C 55 92 BRCA TCGA-A8-A097 GPR27 SNP Missense_Mutation 3 71804099 A G 14 75 BRCA TCGA-A8-A097 C4orf17 SNP Missense_Mutation 4 100461586 C G 32 71 BRCA TCGA-A8-A097 INTU SNP Missense_Mutation 4 128565122 G A 33 62 BRCA TCGA-A8-A097 GPR125 SNP Missense_Mutation 4 22438206 C G 21 59 BRCA TCGA-A8-A097 KDR SNP Silent 4 55980407 C G 29 69 BRCA TCGA-A8-A097 SLC4A4 SNP Missense_Mutation 4 72432765 T A 49 55 BRCA TCGA-A8-A097 AFM SNP Missense_Mutation 4 74363407 G T 33 53 BRCA TCGA-A8-A097 PCDHB16 SNP Missense_Mutation 5 140563393 C T 18 66 BRCA TCGA-A8-A097 TCERG1 SNP Silent 5 145859431 G A 37 45 BRCA TCGA-A8-A097 GPR151 SNP Missense_Mutation 5 145895382 A G 14 89 BRCA TCGA-A8-A097 CDH10 SNP Silent 5 24511481 G A 37 48 BRCA TCGA-A8-A097 SAMD3 SNP Missense_Mutation 6 130466530 A T 8 65 BRCA TCGA-A8-A097 HIST1H3C DEL In_Frame_Del 6 26045934 CCTACC - 26 96 BRCA TCGA-A8-A097 HIST1H3C DEL Frame_Shift_Del 6 26045942 GTGGGAC - 44 96 BRCA TCGA-A8-A097 ZSCAN16 SNP Missense_Mutation 6 28093507 G C 33 78 BRCA TCGA-A8-A097 ECI2 SNP Nonsense_Mutation 6 4116163 G C 45 91 BRCA TCGA-A8-A097 NFKBIE SNP Missense_Mutation 6 44226961 C G 31 68 BRCA TCGA-A8-A097 TNFRSF21 SNP Missense_Mutation 6 47202544 C T 27 51 BRCA TCGA-A8-A097 NRCAM SNP Missense_Mutation 7 107824982 C A 32 59 BRCA TCGA-A8-A097 WDR60 SNP Silent 7 158723189 G C 45 46 BRCA TCGA-A8-A097 GRM3 SNP Silent 7 86468645 C T 24 44 BRCA TCGA-A8-A097 ARPC1A SNP Missense_Mutation 7 98942068 G C 33 100 BRCA TCGA-A8-A097 MCPH1 SNP Splice_site 8 6335116 C A 21 62 BRCA TCGA-A8-A097 TLR4 SNP Missense_Mutation 9 120475977 T A 57 50 BRCA TCGA-A8-A097 DBC1 SNP Missense_Mutation 9 122075479 C A 24 82 BRCA TCGA-A8-A099 POLR3GL SNP Splice_site 1 145457308 C A 30 52 BRCA TCGA-A8-A099 AXDND1 SNP Silent 1 179399655 A G 2 61 BRCA TCGA-A8-A099 LPHN2 SNP Nonsense_Mutation 1 82445611 T A 63 91 BRCA TCGA-A8-A099 KCNK18 SNP Silent 10 118957008 C T 32 51 BRCA TCGA-A8-A099 AMICA1 SNP Missense_Mutation 11 118074301 C T 19 73 BRCA TCGA-A8-A099 GANAB SNP Splice_site 11 62396766 T C 54 53 BRCA TCGA-A8-A099 DHH SNP Missense_Mutation 12 49485024 G A 40 98 BRCA TCGA-A8-A099 GJB6 SNP Silent 13 20797608 C A 30 38 BRCA TCGA-A8-A099 RNF219 SNP Missense_Mutation 13 79190282 G C 33 56 BRCA TCGA-A8-A099 AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-A8-A099 RYR3 SNP Missense_Mutation 15 34023739 C T 23 100 BRCA TCGA-A8-A099 PLA2G4F SNP Missense_Mutation 15 42438328 C A 25 90 BRCA TCGA-A8-A099 SLC28A2 SNP Missense_Mutation 15 45560544 G A 41 69 BRCA TCGA-A8-A099 FAM227B SNP Missense_Mutation 15 49880251 C T 30 49 BRCA TCGA-A8-A099 RABEP2 SNP Missense_Mutation 16 28919994 G T 41 74 BRCA TCGA-A8-A099 MYOM1 SNP Missense_Mutation 18 3067396 G A 37 87 BRCA TCGA-A8-A099 NBEAL1 SNP Missense_Mutation 2 204045211 C G 22 100 BRCA TCGA-A8-A099 NINL SNP Missense_Mutation 20 25493495 C T 27 57 BRCA TCGA-A8-A099 KCNQ2 SNP Silent 20 62073861 G T 37 49 BRCA TCGA-A8-A099 RNF128 SNP Missense_Mutation 23 105937248 A G 15 65 BRCA TCGA-A8-A099 HS6ST2 SNP Missense_Mutation 23 131762771 A C 11 90 BRCA TCGA-A8-A099 MYNN SNP Missense_Mutation 3 169492273 G T 45 98 BRCA TCGA-A8-A099 PAPSS1 SNP Missense_Mutation 4 108535506 G A 38 77 BRCA TCGA-A8-A099 TRIM60 SNP Missense_Mutation 4 165961589 C A 30 60 BRCA TCGA-A8-A099 WBSCR16 SNP Missense_Mutation 7 74482534 C A 18 96 BRCA TCGA-A8-A099 COL1A2 SNP Missense_Mutation 7 94052368 G A 35 100 BRCA TCGA-A8-A099 EMC2 SNP Missense_Mutation 8 109498777 C G 32 58 BRCA TCGA-A8-A099 PRKDC SNP Missense_Mutation 8 48840380 G A 47 80 BRCA TCGA-A8-A099 C9orf170 SNP Missense_Mutation 9 89771612 G T 39 52 BRCA TCGA-A8-A09A CDC14A SNP Silent 1 100921011 A G 8 51 BRCA TCGA-A8-A09A CELSR2 SNP Silent 1 109813577 C T 28 69 BRCA TCGA-A8-A09A CHIA SNP Missense_Mutation 1 111854943 A G 9 48 BRCA TCGA-A8-A09A CERS2 SNP Silent 1 150941434 G A 35 61 BRCA TCGA-A8-A09A TRIM46 DNP Missense_Mutation 1 155150624 GC AT 34 56 BRCA TCGA-A8-A09A LMX1A SNP Missense_Mutation 1 165173228 A T 14 65 BRCA TCGA-A8-A09A GLUL SNP Silent 1 182354560 C T 30 26 BRCA TCGA-A8-A09A NFASC SNP Missense_Mutation 1 204966311 G T 46 57 BRCA TCGA-A8-A09A SNAP47 SNP Silent 1 227935803 G A 45 52 BRCA TCGA-A8-A09A NID1 SNP Missense_Mutation 1 236189310 G A 39 56 BRCA TCGA-A8-A09A SDCCAG8 DEL In_Frame_Del 1 243504344 TTGATC - 60 57 BRCA TCGA-A8-A09A TEKT2 SNP Missense_Mutation 1 36550806 A T 11 67 BRCA TCGA-A8-A09A MACF1 SNP Missense_Mutation 1 39799640 T G 61 53 BRCA TCGA-A8-A09A ATP6V0B SNP Missense_Mutation 1 44442306 C A 25 99 BRCA TCGA-A8-A09A KLF17 DEL Frame_Shift_Del 1 44596297 CAGTG - 29 53 BRCA TCGA-A8-A09A OMA1 SNP Missense_Mutation 1 59004723 G C 35 50 BRCA TCGA-A8-A09A ZNF644 SNP Missense_Mutation 1 91405516 T A 60 52 BRCA TCGA-A8-A09A ARHGAP29 SNP Missense_Mutation 1 94643587 G A 40 60 BRCA TCGA-A8-A09A LOXL4 SNP Missense_Mutation 10 100015449 C A 29 76 BRCA TCGA-A8-A09A BTRC SNP Nonsense_Mutation 10 103190165 C T 27 87 BRCA TCGA-A8-A09A STAMBPL1 SNP Missense_Mutation 10 90682109 G T 42 59 BRCA TCGA-A8-A09A KIF20B SNP Missense_Mutation 10 91497158 A T 15 51 BRCA TCGA-A8-A09A SLC35F2 SNP Splice_site 11 107676086 G T 34 58 BRCA TCGA-A8-A09A IFT46 SNP Missense_Mutation 11 118416559 G T 42 91 BRCA TCGA-A8-A09A TRIM29 SNP Missense_Mutation 11 120008036 A C 9 71 BRCA TCGA-A8-A09A SLC37A2 SNP Missense_Mutation 11 124949644 T A 62 84 BRCA TCGA-A8-A09A NAV2 SNP Missense_Mutation 11 20119207 C G 27 100 BRCA TCGA-A8-A09A KCNQ1 SNP Silent 11 2604682 C A 31 33 BRCA TCGA-A8-A09A CHRM1 SNP Missense_Mutation 11 62677860 C A 28 90 BRCA TCGA-A8-A09A TPP1 DEL In_Frame_Del 11 6638951 GGGTCAGTG - 35 69 BRCA TCGA-A8-A09A ALG8 SNP Missense_Mutation 11 77820538 G A 41 75 BRCA TCGA-A8-A09A MAML2 SNP Missense_Mutation 11 95718755 G T 41 92 BRCA TCGA-A8-A09A DTX1 SNP Silent 12 113534723 C A 23 19 BRCA TCGA-A8-A09A IQCD SNP Missense_Mutation 12 113633529 C G 18 53 BRCA TCGA-A8-A09A PDZRN4 SNP Missense_Mutation 12 41967010 T A 60 41 BRCA TCGA-A8-A09A ADAMTS20 SNP Missense_Mutation 12 43826141 G A 41 71 BRCA TCGA-A8-A09A KRT2 SNP Missense_Mutation 12 53045580 C G 26 65 BRCA TCGA-A8-A09A KRT3 SNP Missense_Mutation 12 53184633 G A 34 62 BRCA TCGA-A8-A09A OR10A7 SNP Missense_Mutation 12 55614826 C A 17 48 BRCA TCGA-A8-A09A LGR5 SNP Missense_Mutation 12 71978313 G T 41 79 BRCA TCGA-A8-A09A TMTC2 SNP Splice_site 12 83359523 G A 35 96 BRCA TCGA-A8-A09A COG3 SNP Splice_Site 13 46065675 T C 57 90 BRCA TCGA-A8-A09A DIO3 SNP Silent 14 102028157 G A 48 50 BRCA TCGA-A8-A09A SUPT16H SNP Missense_Mutation 14 21831260 C G 28 98 BRCA TCGA-A8-A09A RBM23 SNP Silent 14 23371049 G A 33 49 BRCA TCGA-A8-A09A PTGDR SNP Silent 14 52734664 G A 39 39 BRCA TCGA-A8-A09A SYNE2 SNP Missense_Mutation 14 64519171 A C 5 76 BRCA TCGA-A8-A09A SIPA1L1 SNP Missense_Mutation 14 72055185 G C 41 100 BRCA TCGA-A8-A09A TJP1 SNP Missense_Mutation 15 29997787 G C 33 61 BRCA TCGA-A8-A09A KIAA1370 SNP Missense_Mutation 15 52903397 C A 17 99 BRCA TCGA-A8-A09A VPS13C SNP Splice_site 15 62242616 C A 26 88 BRCA TCGA-A8-A09A SEMA7A INS Frame_Shift_Ins 15 74707008 - A 30 66 BRCA TCGA-A8-A09A SNX20 SNP Missense_Mutation 16 50707754 G A 39 58 BRCA TCGA-A8-A09A CHD9 SNP Missense_Mutation 16 53279531 A C 9 93 BRCA TCGA-A8-A09A NLRC5 SNP Missense_Mutation 16 57104491 T C 51 54 BRCA TCGA-A8-A09A CNOT1 DNP Missense_Mutation 16 58559182 GC TA 46 100 BRCA TCGA-A8-A09A FUK SNP Silent 16 70500919 T A 55 46 BRCA TCGA-A8-A09A PMFBP1 SNP Missense_Mutation 16 72170703 G T 46 55 BRCA TCGA-A8-A09A SLFN12L SNP Missense_Mutation 17 33807026 G A 34 65 BRCA TCGA-A8-A09A RAPGEFL1 SNP Silent 17 38345157 G A 34 51 BRCA TCGA-A8-A09A CCR7 SNP Missense_Mutation 17 38711716 T A 54 91 BRCA TCGA-A8-A09A STAT5A DNP Missense_Mutation 17 40458279 GC TG 46 67 BRCA TCGA-A8-A09A GP1BA SNP Missense_Mutation 17 4836276 A C 2 76 BRCA TCGA-A8-A09A ATP5A1 SNP Silent 18 43667040 T G 53 48 BRCA TCGA-A8-A09A CCNE1 SNP Missense_Mutation 19 30313457 G A 38 61 BRCA TCGA-A8-A09A CATSPERG SNP Missense_Mutation 19 38853402 C T 26 62 BRCA TCGA-A8-A09A PSG11 SNP Missense_Mutation 19 43530506 G C 43 50 BRCA TCGA-A8-A09A PPP5C SNP Silent 19 46890423 G A 33 72 BRCA TCGA-A8-A09A ZNF470 SNP Missense_Mutation 19 57085861 A T 15 52 BRCA TCGA-A8-A09A PNPLA6 SNP Silent 19 7619510 G A 33 52 BRCA TCGA-A8-A09A ADAMTS10 SNP Silent 19 8661220 C G 19 43 BRCA TCGA-A8-A09A MUC16 SNP Missense_Mutation 19 8971795 G T 46 47 BRCA TCGA-A8-A09A STAT4 SNP Missense_Mutation 2 191931190 T C 55 87 BRCA TCGA-A8-A09A MYO1B SNP Missense_Mutation 2 192250662 C A 17 70 BRCA TCGA-A8-A09A CYP27A1 SNP Silent 2 219677771 G A 43 13 BRCA TCGA-A8-A09A FAM179A SNP Missense_Mutation 2 29274906 G T 44 37 BRCA TCGA-A8-A09A SOS1 SNP Silent 2 39224156 C T 31 53 BRCA TCGA-A8-A09A USP34 SNP Nonsense_Mutation 2 61492665 C T 21 86 BRCA TCGA-A8-A09A DEFB115 SNP Missense_Mutation 20 29847380 A T 3 56 BRCA TCGA-A8-A09A EPB41L1 SNP Nonsense_Mutation 20 34775661 C G 19 38 BRCA TCGA-A8-A09A DLGAP4 SNP Missense_Mutation 20 35152658 G C 35 100 BRCA TCGA-A8-A09A IFT52 SNP Silent 20 42275617 T C 52 51 BRCA TCGA-A8-A09A HNF4A SNP Missense_Mutation 20 43042402 A T 8 91 BRCA TCGA-A8-A09A PCNT SNP Missense_Mutation 21 47775512 G A 40 30 BRCA TCGA-A8-A09A INPP5J SNP Missense_Mutation 22 31522391 C A 20 80 BRCA TCGA-A8-A09A WWC3 SNP Missense_Mutation 23 10062266 C T 28 98 BRCA TCGA-A8-A09A TCEANC SNP Missense_Mutation 23 13681505 A G 4 54 BRCA TCGA-A8-A09A BCOR SNP Silent 23 39932241 C T 28 56 BRCA TCGA-A8-A09A HUWE1 SNP Missense_Mutation 23 53644083 C G 26 96 BRCA TCGA-A8-A09A GNL3L SNP Missense_Mutation 23 54578020 C A 24 67 BRCA TCGA-A8-A09A IRAK2 SNP Missense_Mutation 3 10255044 C T 25 60 BRCA TCGA-A8-A09A HEG1 SNP Missense_Mutation 3 124748125 G C 33 76 BRCA TCGA-A8-A09A CNTN4 SNP Missense_Mutation 3 3080650 G A 42 94 BRCA TCGA-A8-A09A CLASP2 SNP Missense_Mutation 3 33668523 A G 4 90 BRCA TCGA-A8-A09A SMARCC1 SNP Silent 3 47770552 G C 43 52 BRCA TCGA-A8-A09A CCDC66 SNP Missense_Mutation 3 56653531 G A 41 60 BRCA TCGA-A8-A09A ELOVL6 SNP Missense_Mutation 4 110980805 G C 46 100 BRCA TCGA-A8-A09A TMEM156 SNP Silent 4 38990517 A C 15 72 BRCA TCGA-A8-A09A KIT SNP Missense_Mutation 4 55589813 G A 41 99 BRCA TCGA-A8-A09A ANKRD17 SNP Silent 4 74043217 C T 30 84 BRCA TCGA-A8-A09A PPEF2 SNP Silent 4 76782042 G A 35 42 BRCA TCGA-A8-A09A CCDC112 SNP Nonsense_Mutation 5 114611095 G A 38 69 BRCA TCGA-A8-A09A NMUR2 SNP Missense_Mutation 5 151777641 T G 64 67 BRCA TCGA-A8-A09A MFAP3 SNP Silent 5 153432652 G T 45 65 BRCA TCGA-A8-A09A ADAM19 SNP Nonsense_Mutation 5 156907994 G C 45 55 BRCA TCGA-A8-A09A CEP72 SNP Missense_Mutation 5 635516 G C 44 45 BRCA TCGA-A8-A09A MTRR SNP Silent 5 7878078 G A 40 29 BRCA TCGA-A8-A09A PCSK1 SNP Silent 5 95746673 C A 18 50 BRCA TCGA-A8-A09A GRIK2 SNP Missense_Mutation 6 102124623 G C 41 100 BRCA TCGA-A8-A09A AIM1 SNP Missense_Mutation 6 106967193 A G 14 50 BRCA TCGA-A8-A09A NEDD9 SNP Missense_Mutation 6 11213899 C T 27 100 BRCA TCGA-A8-A09A CDKAL1 SNP Missense_Mutation 6 21201369 T G 51 75 BRCA TCGA-A8-A09A BTN2A3 SNP Silent 6 26431102 G A 34 52 BRCA TCGA-A8-A09A NKAPL SNP Silent 6 28227179 C A 23 32 BRCA TCGA-A8-A09A B3GALT4 SNP Missense_Mutation 6 33245209 C A 28 53 BRCA TCGA-A8-A09A KCNQ5 SNP Missense_Mutation 6 73900398 G T 48 85 BRCA TCGA-A8-A09A PRSS35 SNP Silent 6 84233451 G A 43 49 BRCA TCGA-A8-A09A SLC26A5 SNP Silent 7 103051936 G T 46 46 BRCA TCGA-A8-A09A RINT1 SNP Missense_Mutation 7 105187507 A T 1 55 BRCA TCGA-A8-A09A CPA1 SNP Missense_Mutation 7 130025723 A G 14 81 BRCA TCGA-A8-A09A HIPK2 SNP Splice_site 7 139305147 C T 24 98 BRCA TCGA-A8-A09A HIPK2 SNP Nonsense_Mutation 7 139416107 C A 29 99 BRCA TCGA-A8-A09A MGAM SNP Splice_Site 7 141766522 G C 36 92 BRCA TCGA-A8-A09A MGAM SNP Missense_Mutation 7 141802435 T G 53 50 BRCA TCGA-A8-A09A CDCA7L SNP Missense_Mutation 7 21947807 G T 47 61 BRCA TCGA-A8-A09A IGF2BP3 SNP Missense_Mutation 7 23351989 G A 40 57 BRCA TCGA-A8-A09A SCRN1 SNP Silent 7 29994932 T G 61 47 BRCA TCGA-A8-A09A ABCA13 SNP Missense_Mutation 7 48312968 G T 47 65 BRCA TCGA-A8-A09A GTF2IRD2P1 SNP Missense_Mutation 7 72658101 G A 39 59 BRCA TCGA-A8-A09A MDH2 SNP Missense_Mutation 7 75689766 G A 40 100 BRCA TCGA-A8-A09A EXT1 SNP Nonsense_Mutation 8 118842508 A C 4 72 BRCA TCGA-A8-A09A LZTS1 SNP Missense_Mutation 8 20112577 T C 58 89 BRCA TCGA-A8-A09A AKNA SNP Silent 9 117120303 G A 39 29 BRCA TCGA-A8-A09A CNTLN SNP Missense_Mutation 9 17235769 A T 3 56 BRCA TCGA-A8-A09A ADAMTSL1 SNP Missense_Mutation 9 18776908 C T 27 84 BRCA TCGA-A8-A09A IFNA10 SNP Missense_Mutation 9 21206600 A C 2 54 BRCA TCGA-A8-A09A DDX58 SNP Missense_Mutation 9 32466308 C T 31 62 BRCA TCGA-A8-A09A JAK2 SNP Nonsense_Mutation 9 5022119 C A 18 50 BRCA TCGA-A8-A09A TRPM6 SNP Missense_Mutation 9 77377214 G A 45 87 BRCA TCGA-A8-A09A DAPK1 SNP Silent 9 90220079 G T 45 45 BRCA TCGA-A8-A09B RPL22 SNP Silent 1 6246831 T G 57 15 BRCA TCGA-A8-A09B TCF7L2 SNP Missense_Mutation 10 114849277 T C 60 71 BRCA TCGA-A8-A09B CTSW SNP Missense_Mutation 11 65650133 G A 41 66 BRCA TCGA-A8-A09B MLL2 SNP Silent 12 49444769 G C 43 49 BRCA TCGA-A8-A09B ESPL1 DEL Frame_Shift_Del 12 53684751 T - 55 66 BRCA TCGA-A8-A09B ATP11A SNP Splice_Site 13 113464932 G C 35 93 BRCA TCGA-A8-A09B B3GALTL SNP Silent 13 31903712 C T 31 49 BRCA TCGA-A8-A09B GPC5 SNP Missense_Mutation 13 93518661 G T 36 54 BRCA TCGA-A8-A09B GOLGA8A SNP Missense_Mutation 15 34673767 C T 32 53 BRCA TCGA-A8-A09B FAM81A SNP Missense_Mutation 15 59784566 G A 33 75 BRCA TCGA-A8-A09B UBE2Q2 SNP Missense_Mutation 15 76146749 C T 23 86 BRCA TCGA-A8-A09B ERAL1 SNP Silent 17 27185468 G A 36 91 BRCA TCGA-A8-A09B RAB40B SNP Missense_Mutation 17 80615975 C T 19 99 BRCA TCGA-A8-A09B SERPINB11 SNP Missense_Mutation 18 61387255 G A 38 68 BRCA TCGA-A8-A09B COL5A3 SNP Nonsense_Mutation 19 10084293 G A 38 68 BRCA TCGA-A8-A09B RYR1 SNP Missense_Mutation 19 38948842 C T 22 98 BRCA TCGA-A8-A09B LTBP4 SNP Missense_Mutation 19 41123021 G A 39 63 BRCA TCGA-A8-A09B CNFN SNP Missense_Mutation 19 42891312 C T 31 83 BRCA TCGA-A8-A09B PNMAL2 SNP Missense_Mutation 19 46997306 C T 30 54 BRCA TCGA-A8-A09B SHANK1 SNP Missense_Mutation 19 51192217 G A 43 89 BRCA TCGA-A8-A09B CLEC4G SNP Missense_Mutation 19 7795289 C G 24 53 BRCA TCGA-A8-A09B HUNK SNP Silent 21 33331189 C T 28 73 BRCA TCGA-A8-A09B TNRC6B INS Splice_Site 22 40669427 - T 3 89 BRCA TCGA-A8-A09B ATXN10 SNP Missense_Mutation 22 46098586 C T 23 58 BRCA TCGA-A8-A09B TRPC5 SNP Silent 23 111095568 G C 33 64 BRCA TCGA-A8-A09B ITIH6 SNP Missense_Mutation 23 54777709 G A 39 45 BRCA TCGA-A8-A09B DPPA2 SNP Missense_Mutation 3 109026960 C T 25 56 BRCA TCGA-A8-A09B PIK3CA DEL In_Frame_Del 3 178928060 GCCAGTACCTCATGGATTAGAAGATTT - 42 98 BRCA TCGA-A8-A09B TTC14 SNP Missense_Mutation 3 180321044 G T 44 98 BRCA TCGA-A8-A09B ITPR1 SNP Missense_Mutation 3 4853138 G A 48 51 BRCA TCGA-A8-A09B PCDHA8 SNP Silent 5 140223030 C T 21 59 BRCA TCGA-A8-A09B PCDHB1 SNP Missense_Mutation 5 140433373 G A 40 54 BRCA TCGA-A8-A09B TIGD6 SNP Missense_Mutation 5 149375596 G C 36 55 BRCA TCGA-A8-A09B C6 SNP Missense_Mutation 5 41160256 C T 32 100 BRCA TCGA-A8-A09B MAP3K1 SNP Splice_site 5 56160761 G A 35 77 BRCA TCGA-A8-A09B MAP3K1 SNP Nonsense_Mutation 5 56161795 C A 29 76 BRCA TCGA-A8-A09B CTAGE9 SNP Missense_Mutation 6 132031833 C T 32 NaN BRCA TCGA-A8-A09B RIPK1 SNP Silent 6 3081257 C T 29 66 BRCA TCGA-A8-A09B DST SNP Missense_Mutation 6 56473226 C T 31 80 BRCA TCGA-A8-A09B CTAGE6 SNP Missense_Mutation 7 143453578 G C 45 52 BRCA TCGA-A8-A09B SP4 SNP Missense_Mutation 7 21469678 C A 29 95 BRCA TCGA-A8-A09B SPDYE5 SNP Missense_Mutation 7 75130890 G A 45 51 BRCA TCGA-A8-A09B SPDYE5 SNP Silent 7 75130908 G A 33 51 BRCA TCGA-A8-A09B C9orf174 SNP Missense_Mutation 9 100070026 C T 31 34 BRCA TCGA-A8-A09B ANGPTL2 SNP Silent 9 129870474 C A 21 54 BRCA TCGA-A8-A09C TMEM51 SNP Missense_Mutation 1 15541743 G A 43 62 BRCA TCGA-A8-A09C SELP SNP Missense_Mutation 1 169578883 C A 30 50 BRCA TCGA-A8-A09C CDC42BPA SNP Missense_Mutation 1 227327350 T G 53 66 BRCA TCGA-A8-A09C SEC31B SNP Missense_Mutation 10 102250551 C A 24 51 BRCA TCGA-A8-A09C SEC31B SNP Missense_Mutation 10 102258465 T C 64 67 BRCA TCGA-A8-A09C AGBL2 SNP Missense_Mutation 11 47688436 T A 52 47 BRCA TCGA-A8-A09C CD5 SNP Silent 11 60886752 T C 59 48 BRCA TCGA-A8-A09C NXF1 SNP Missense_Mutation 11 62564800 G A 39 92 BRCA TCGA-A8-A09C DENND5A SNP Silent 11 9200591 A G 16 50 BRCA TCGA-A8-A09C MAML2 SNP Silent 11 95826166 G A 36 73 BRCA TCGA-A8-A09C DIP2B SNP Missense_Mutation 12 51138497 G C 40 88 BRCA TCGA-A8-A09C CALCOCO1 SNP Missense_Mutation 12 54117515 G T 44 53 BRCA TCGA-A8-A09C PLXNC1 SNP Missense_Mutation 12 94641830 C T 19 70 BRCA TCGA-A8-A09C EXD2 SNP Silent 14 69707724 G A 34 62 BRCA TCGA-A8-A09C VWA3A INS Frame_Shift_Ins 16 22128100 - C 50 65 BRCA TCGA-A8-A09C MYO5B SNP Missense_Mutation 18 47363248 T C 49 64 BRCA TCGA-A8-A09C ZNF415 SNP Silent 19 53612815 T C 52 49 BRCA TCGA-A8-A09C LILRA6 SNP Silent 19 54742958 G A 40 28 BRCA TCGA-A8-A09C ZNF460 SNP Missense_Mutation 19 57802916 T G 64 49 BRCA TCGA-A8-A09C GLI2 SNP Missense_Mutation 2 121747255 C A 26 63 BRCA TCGA-A8-A09C FAM123C SNP Nonsense_Mutation 2 131521325 C A 28 53 BRCA TCGA-A8-A09C ARHGAP15 SNP Missense_Mutation 2 144245061 A G 13 83 BRCA TCGA-A8-A09C CNGA2 SNP Silent 23 150912604 G A 47 52 BRCA TCGA-A8-A09C PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A09C CADPS SNP Splice_Site 3 62499312 C T 19 99 BRCA TCGA-A8-A09C FHDC1 SNP Silent 4 153897755 T G 58 36 BRCA TCGA-A8-A09C RFC1 SNP Silent 4 39308263 C G 17 49 BRCA TCGA-A8-A09C MUC7 SNP Silent 4 71347001 A C 8 49 BRCA TCGA-A8-A09C PDE4D SNP Splice_site 5 58511603 A G 8 77 BRCA TCGA-A8-A09C ABCA13 SNP Nonsense_Mutation 7 48312171 C T 23 52 BRCA TCGA-A8-A09C SORBS3 DEL Frame_Shift_Del 8 22412098 G - 35 62 BRCA TCGA-A8-A09C DBH INS Frame_Shift_Ins 9 136513070 - AT 26 95 BRCA TCGA-A8-A09C UHRF2 SNP Splice_site 9 6460790 G A 43 95 BRCA TCGA-A8-A09D TARS2 SNP Missense_Mutation 1 150470165 T C 62 42 BRCA TCGA-A8-A09D TROVE2 SNP Silent 1 193051360 C T 23 45 BRCA TCGA-A8-A09D NID1 SNP Silent 1 236189206 C T 26 48 BRCA TCGA-A8-A09D OR2T34 SNP Silent 1 248737984 C T 32 53 BRCA TCGA-A8-A09D CSMD2 SNP Silent 1 34046410 G A 35 64 BRCA TCGA-A8-A09D CCDC147 SNP Missense_Mutation 10 106163528 G T 35 84 BRCA TCGA-A8-A09D FGFR2 SNP Missense_Mutation 10 123324990 A G 14 84 BRCA TCGA-A8-A09D MUC5B SNP Missense_Mutation 11 1271132 C T 18 52 BRCA TCGA-A8-A09D ANO5 SNP Missense_Mutation 11 22215054 C T 32 55 BRCA TCGA-A8-A09D ETNK1 SNP Missense_Mutation 12 22797164 T A 63 56 BRCA TCGA-A8-A09D GMPR2 SNP Missense_Mutation 14 24702445 C T 22 51 BRCA TCGA-A8-A09D C14orf39 SNP Splice_Site 14 60938269 C T 18 80 BRCA TCGA-A8-A09D RPS6KL1 INS Frame_Shift_Ins 14 75377983 - G 58 92 BRCA TCGA-A8-A09D SLC12A6 SNP Missense_Mutation 15 34628702 C T 29 51 BRCA TCGA-A8-A09D STAC2 SNP Silent 17 37369272 A C 2 42 BRCA TCGA-A8-A09D FTSJ3 SNP Missense_Mutation 17 61897442 C T 31 67 BRCA TCGA-A8-A09D OTOP3 SNP Missense_Mutation 17 72937790 G A 42 67 BRCA TCGA-A8-A09D ILF3 SNP Silent 19 10781784 C T 23 34 BRCA TCGA-A8-A09D ZNF536 SNP Missense_Mutation 19 31040294 G T 33 70 BRCA TCGA-A8-A09D PAK4 SNP Missense_Mutation 19 39665579 C G 29 77 BRCA TCGA-A8-A09D CEACAM5 SNP Missense_Mutation 19 42213623 C T 23 52 BRCA TCGA-A8-A09D ZNF576 SNP Missense_Mutation 19 44103077 C G 20 53 BRCA TCGA-A8-A09D ARHGAP35 DEL Frame_Shift_Del 19 47423638 AGATTGAGCACTTGATTAGTTCTCGGTTT - 3 71 BRCA TCGA-A8-A09D MUC16 SNP Silent 19 9090876 C A 22 48 BRCA TCGA-A8-A09D ZNF561 SNP Missense_Mutation 19 9721093 T G 51 75 BRCA TCGA-A8-A09D CPS1 SNP Missense_Mutation 2 211471494 A T 4 93 BRCA TCGA-A8-A09D ANKMY1 SNP Missense_Mutation 2 241468742 C A 28 49 BRCA TCGA-A8-A09D DTNB SNP Missense_Mutation 2 25642391 T C 56 85 BRCA TCGA-A8-A09D BFSP1 SNP Missense_Mutation 20 17475142 C A 24 50 BRCA TCGA-A8-A09D KRTAP13-3 SNP Silent 21 31798069 C T 22 30 BRCA TCGA-A8-A09D ITSN1 SNP Missense_Mutation 21 35255938 C T 23 55 BRCA TCGA-A8-A09D RPL3 SNP Missense_Mutation 22 39709721 T G 59 91 BRCA TCGA-A8-A09D ANKRD28 SNP Missense_Mutation 3 15753674 C T 32 87 BRCA TCGA-A8-A09D PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A09D RFC4 DEL Frame_Shift_Del 3 186507944 G - 48 94 BRCA TCGA-A8-A09D RFC4 DEL In_Frame_Del 3 186507946 GATAATAGA - 45 48 BRCA TCGA-A8-A09D ZDHHC19 SNP Silent 3 195937533 G A 45 75 BRCA TCGA-A8-A09D PIK3R1 SNP Silent 5 67589269 A G 4 46 BRCA TCGA-A8-A09D AGGF1 SNP Missense_Mutation 5 76348570 T A 61 89 BRCA TCGA-A8-A09D BEND6 SNP Missense_Mutation 6 56879947 C T 29 49 BRCA TCGA-A8-A09D USP45 SNP Silent 6 99887726 G C 34 54 BRCA TCGA-A8-A09D TSPAN33 DEL Frame_Shift_Del 7 128807705 CA - 21 72 BRCA TCGA-A8-A09D UBR5 SNP Silent 8 103309809 C T 24 48 BRCA TCGA-A8-A09D GLIS3 SNP Missense_Mutation 9 4118010 C T 31 86 BRCA TCGA-A8-A09D NOL8 SNP Missense_Mutation 9 95077771 C T 30 59 BRCA TCGA-A8-A09E VCAM1 SNP Missense_Mutation 1 101190191 A T 9 53 BRCA TCGA-A8-A09E BCL9 SNP Missense_Mutation 1 147092581 C G 18 100 BRCA TCGA-A8-A09E CEP350 SNP Missense_Mutation 1 180062453 C T 20 56 BRCA TCGA-A8-A09E APOBEC4 SNP Missense_Mutation 1 183617405 C T 27 71 BRCA TCGA-A8-A09E FAM58B SNP Silent 1 200182991 G A 48 50 BRCA TCGA-A8-A09E PIGV SNP Missense_Mutation 1 27124150 A T 10 52 BRCA TCGA-A8-A09E SH3PXD2A SNP Silent 10 105362404 C T 23 28 BRCA TCGA-A8-A09E SLC18A2 SNP Missense_Mutation 10 119012920 C A 30 98 BRCA TCGA-A8-A09E PTEN SNP Nonsense_Mutation 10 89653840 C G 17 80 BRCA TCGA-A8-A09E DKK3 INS Frame_Shift_Ins 11 11986224 - A 21 53 BRCA TCGA-A8-A09E OR8B8 SNP Missense_Mutation 11 124310466 G T 44 43 BRCA TCGA-A8-A09E OR5T1 SNP Missense_Mutation 11 56043133 G T 33 40 BRCA TCGA-A8-A09E TNKS1BP1 DEL Frame_Shift_Del 11 57076427 CT - 20 67 BRCA TCGA-A8-A09E PPP2R5B SNP Nonsense_Mutation 11 64700359 G A 41 94 BRCA TCGA-A8-A09E DCHS1 SNP Missense_Mutation 11 6646655 G A 43 83 BRCA TCGA-A8-A09E BRI3BP INS Frame_Shift_Ins 12 125509844 - G 58 53 BRCA TCGA-A8-A09E KCNA6 SNP Silent 12 4919672 C T 24 55 BRCA TCGA-A8-A09E PEX5 SNP Silent 12 7343051 G A 35 58 BRCA TCGA-A8-A09E PAWR SNP Silent 12 79990324 G A 46 54 BRCA TCGA-A8-A09E LMO7 SNP Missense_Mutation 13 76382190 C T 19 71 BRCA TCGA-A8-A09E PSMB11 SNP Missense_Mutation 14 23511993 G A 40 67 BRCA TCGA-A8-A09E TUBGCP5 SNP Silent 15 22866766 T A 60 82 BRCA TCGA-A8-A09E DTWD1 SNP Missense_Mutation 15 49935552 C A 17 68 BRCA TCGA-A8-A09E ALPK3 INS Frame_Shift_Ins 15 85382261 - A 23 80 BRCA TCGA-A8-A09E DECR2 SNP Silent 16 461494 G C 47 75 BRCA TCGA-A8-A09E WBP2 SNP Missense_Mutation 17 73844716 T C 56 76 BRCA TCGA-A8-A09E ZNF726 SNP Missense_Mutation 19 24116032 G A 45 44 BRCA TCGA-A8-A09E DACT3 SNP Missense_Mutation 19 47151768 C A 22 88 BRCA TCGA-A8-A09E FCAR DEL Frame_Shift_Del 19 55399582 C - 32 49 BRCA TCGA-A8-A09E DUS3L INS Frame_Shift_Ins 19 5789306 - C 36 54 BRCA TCGA-A8-A09E TTN SNP Missense_Mutation 2 179595715 A G 16 93 BRCA TCGA-A8-A09E OBSL1 DEL In_Frame_Del 2 220427290 CAC - 25 57 BRCA TCGA-A8-A09E ADAMTS1 INS Frame_Shift_Ins 21 28212378 - T 27 39 BRCA TCGA-A8-A09E TKTL1 SNP Missense_Mutation 23 153533679 C A 32 67 BRCA TCGA-A8-A09E CXorf22 SNP Missense_Mutation 23 35993847 G A 48 58 BRCA TCGA-A8-A09E GDPD2 SNP Missense_Mutation 23 69646733 C A 20 58 BRCA TCGA-A8-A09E SETD2 SNP Missense_Mutation 3 47059192 C T 23 87 BRCA TCGA-A8-A09E MAP4 INS Frame_Shift_Ins 3 47894422 - G 58 55 BRCA TCGA-A8-A09E LRBA SNP Missense_Mutation 4 151392779 C T 28 72 BRCA TCGA-A8-A09E KIAA0922 INS Frame_Shift_Ins 4 154553903 - G 23 60 BRCA TCGA-A8-A09E DCHS2 SNP Missense_Mutation 4 155219117 T A 51 43 BRCA TCGA-A8-A09E SORBS2 INS Frame_Shift_Ins 4 186544746 - T 29 100 BRCA TCGA-A8-A09E DMXL1 DEL Splice_Site 5 118511027 CTACAGGTAACT - 20 55 BRCA TCGA-A8-A09E CHSY3 SNP Missense_Mutation 5 129243904 C G 18 98 BRCA TCGA-A8-A09E HIST1H2AJ SNP Silent 6 27782498 C T 24 50 BRCA TCGA-A8-A09E ZFP57 SNP Silent 6 29640364 G A 41 58 BRCA TCGA-A8-A09E EPHB6 SNP Missense_Mutation 7 142568064 G A 40 70 BRCA TCGA-A8-A09E OR6B1 SNP Missense_Mutation 7 143701799 C T 30 59 BRCA TCGA-A8-A09E KCNK9 SNP Missense_Mutation 8 140631121 C T 22 100 BRCA TCGA-A8-A09E UNC5D SNP Missense_Mutation 8 35544126 G A 39 100 BRCA TCGA-A8-A09E ARFGEF1 SNP Missense_Mutation 8 68179153 T C 54 92 BRCA TCGA-A8-A09E IKBKAP SNP Missense_Mutation 9 111668755 C T 29 78 BRCA TCGA-A8-A09E UCK1 INS Frame_Shift_Ins 9 134400562 - T 6 31 BRCA TCGA-A8-A09G SASS6 SNP Missense_Mutation 1 100588021 G A 33 90 BRCA TCGA-A8-A09G NTNG1 SNP Silent 1 107691311 G A 48 55 BRCA TCGA-A8-A09G MTOR SNP Silent 1 11307746 C T 29 58 BRCA TCGA-A8-A09G FBXO6 SNP Missense_Mutation 1 11728894 G C 37 49 BRCA TCGA-A8-A09G FAM46C SNP Missense_Mutation 1 118166421 C T 31 78 BRCA TCGA-A8-A09G TNFAIP8L2 SNP Missense_Mutation 1 151131244 G A 38 75 BRCA TCGA-A8-A09G CGN SNP Silent 1 151509346 C T 29 73 BRCA TCGA-A8-A09G FLG SNP Missense_Mutation 1 152284025 G T 40 50 BRCA TCGA-A8-A09G DAP3 SNP Missense_Mutation 1 155699069 C G 32 68 BRCA TCGA-A8-A09G GON4L SNP Missense_Mutation 1 155785664 C G 29 82 BRCA TCGA-A8-A09G CD1C SNP Missense_Mutation 1 158261127 C A 31 44 BRCA TCGA-A8-A09G ATP1A4 SNP Missense_Mutation 1 160156095 A G 14 74 BRCA TCGA-A8-A09G SLAMF1 SNP Missense_Mutation 1 160593894 C T 32 53 BRCA TCGA-A8-A09G FCGR2C SNP Splice_site 1 161569595 G C 33 49 BRCA TCGA-A8-A09G LRRC52 SNP Missense_Mutation 1 165513765 G A 45 93 BRCA TCGA-A8-A09G RSG1 DEL Frame_Shift_Del 1 16560219 A - 5 40 BRCA TCGA-A8-A09G PAPPA2 SNP Silent 1 176564441 G C 45 54 BRCA TCGA-A8-A09G FAM5C SNP Missense_Mutation 1 190068000 A T 12 51 BRCA TCGA-A8-A09G CFHR1 SNP Silent 1 196799676 C T 17 55 BRCA TCGA-A8-A09G NR5A2 SNP Silent 1 200080383 C T 31 42 BRCA TCGA-A8-A09G PPFIA4 SNP Silent 1 203012602 G A 45 61 BRCA TCGA-A8-A09G PPP1R15B SNP Silent 1 204379265 C T 29 54 BRCA TCGA-A8-A09G PPP1R15B SNP Missense_Mutation 1 204380369 C G 32 61 BRCA TCGA-A8-A09G DSTYK SNP Silent 1 205156711 G A 45 55 BRCA TCGA-A8-A09G USH2A SNP Missense_Mutation 1 215932030 G C 45 89 BRCA TCGA-A8-A09G USH2A SNP Silent 1 215933100 G C 37 62 BRCA TCGA-A8-A09G RRP15 SNP Nonsense_Mutation 1 218480877 C G 29 79 BRCA TCGA-A8-A09G FBXO28 SNP Missense_Mutation 1 224341019 G A 33 100 BRCA TCGA-A8-A09G KIAA1804 SNP Splice_site 1 233497799 G C 41 98 BRCA TCGA-A8-A09G RYR2 SNP Nonsense_Mutation 1 237753282 C G 29 70 BRCA TCGA-A8-A09G SDCCAG8 SNP Missense_Mutation 1 243542029 G C 33 83 BRCA TCGA-A8-A09G ZNF238 SNP Missense_Mutation 1 244217588 G C 41 81 BRCA TCGA-A8-A09G ZNF124 SNP Silent 1 247320336 A G 8 52 BRCA TCGA-A8-A09G OR2L3 DEL Frame_Shift_Del 1 248224911 G - 47 51 BRCA TCGA-A8-A09G SESN2 SNP Missense_Mutation 1 28601371 C G 30 60 BRCA TCGA-A8-A09G S100PBP SNP Missense_Mutation 1 33292196 G C 45 65 BRCA TCGA-A8-A09G TRAPPC3 SNP Silent 1 36603571 G A 45 60 BRCA TCGA-A8-A09G FAAH SNP Missense_Mutation 1 46872031 C A 29 71 BRCA TCGA-A8-A09G TMEM48 SNP Nonsense_Mutation 1 54293790 G A 45 92 BRCA TCGA-A8-A09G TTC4 SNP Missense_Mutation 1 55194063 G C 33 72 BRCA TCGA-A8-A09G INADL SNP Missense_Mutation 1 62321852 G A 41 73 BRCA TCGA-A8-A09G INADL SNP Missense_Mutation 1 62330295 C G 24 58 BRCA TCGA-A8-A09G EFCAB7 SNP Nonsense_Mutation 1 64011606 C G 29 73 BRCA TCGA-A8-A09G ELTD1 SNP Missense_Mutation 1 79357213 C G 32 78 BRCA TCGA-A8-A09G ZDHHC6 SNP Missense_Mutation 10 114205164 C G 29 86 BRCA TCGA-A8-A09G TACC2 SNP Missense_Mutation 10 123842458 G A 41 52 BRCA TCGA-A8-A09G TACC2 SNP Nonsense_Mutation 10 123842484 G T 45 56 BRCA TCGA-A8-A09G TACC2 SNP Missense_Mutation 10 123842796 G A 33 56 BRCA TCGA-A8-A09G TACC2 SNP Missense_Mutation 10 123843603 G A 34 57 BRCA TCGA-A8-A09G TACC2 SNP Missense_Mutation 10 123844256 G A 47 25 BRCA TCGA-A8-A09G TACC2 SNP Missense_Mutation 10 123844803 G C 33 45 BRCA TCGA-A8-A09G TACC2 SNP Missense_Mutation 10 123846143 G C 41 52 BRCA TCGA-A8-A09G DMBT1 SNP Missense_Mutation 10 124351025 C T 31 51 BRCA TCGA-A8-A09G BCCIP SNP Missense_Mutation 10 127519144 C T 29 65 BRCA TCGA-A8-A09G CCDC3 SNP Splice_site 10 12940677 G C 45 64 BRCA TCGA-A8-A09G ZNF438 SNP Splice_site 10 31133891 C A 29 72 BRCA TCGA-A8-A09G ALOX5 SNP Nonsense_Mutation 10 45938925 G T 41 96 BRCA TCGA-A8-A09G FAM208B SNP Nonsense_Mutation 10 5788358 C T 29 52 BRCA TCGA-A8-A09G OIT3 SNP Silent 10 74692229 C T 32 50 BRCA TCGA-A8-A09G TTC18 SNP Missense_Mutation 10 75113458 C T 32 84 BRCA TCGA-A8-A09G USP54 SNP Missense_Mutation 10 75290495 C T 31 78 BRCA TCGA-A8-A09G AP3M1 SNP Silent 10 75889680 G C 33 52 BRCA TCGA-A8-A09G FGFBP3 SNP Splice_site 10 93667949 C G 32 55 BRCA TCGA-A8-A09G BLNK SNP Silent 10 97951825 G A 45 48 BRCA TCGA-A8-A09G MMP27 SNP Missense_Mutation 11 102573508 C T 29 98 BRCA TCGA-A8-A09G MMP27 SNP Missense_Mutation 11 102573514 C G 29 98 BRCA TCGA-A8-A09G MMP10 SNP Missense_Mutation 11 102650299 C G 29 97 BRCA TCGA-A8-A09G C2CD2L SNP Silent 11 118983080 G C 45 51 BRCA TCGA-A8-A09G VWA5A SNP Silent 11 123994096 G A 33 95 BRCA TCGA-A8-A09G CKAP5 SNP Missense_Mutation 11 46772688 C T 32 100 BRCA TCGA-A8-A09G OR4C13 SNP Silent 11 49974337 T C 51 54 BRCA TCGA-A8-A09G OR5D13 SNP Nonsense_Mutation 11 55540972 C G 29 63 BRCA TCGA-A8-A09G OR10AG1 SNP Missense_Mutation 11 55735366 C T 17 33 BRCA TCGA-A8-A09G ACTN3 SNP Silent 11 66328136 G A 33 71 BRCA TCGA-A8-A09G SPTBN2 SNP Nonsense_Mutation 11 66468703 G C 45 95 BRCA TCGA-A8-A09G ARAP1 SNP Missense_Mutation 11 72410547 C G 29 98 BRCA TCGA-A8-A09G SPIC SNP Missense_Mutation 12 101876615 C G 32 63 BRCA TCGA-A8-A09G KLRK1 SNP Missense_Mutation 12 10531194 G C 45 56 BRCA TCGA-A8-A09G PRR4 SNP Missense_Mutation 12 11001988 G C 45 67 BRCA TCGA-A8-A09G P2RX4 SNP Missense_Mutation 12 121670251 G A 37 80 BRCA TCGA-A8-A09G CCDC62 SNP Missense_Mutation 12 123290727 C T 32 53 BRCA TCGA-A8-A09G DUSP16 SNP Nonsense_Mutation 12 12630056 G C 45 76 BRCA TCGA-A8-A09G DUSP16 SNP Nonsense_Mutation 12 12630252 G A 37 73 BRCA TCGA-A8-A09G GOLGA3 SNP Silent 12 133384794 G A 45 57 BRCA TCGA-A8-A09G ZNF268 SNP Missense_Mutation 12 133780851 G A 33 60 BRCA TCGA-A8-A09G CACNA1C SNP Missense_Mutation 12 2743501 G T 45 85 BRCA TCGA-A8-A09G KRT18 SNP Missense_Mutation 12 53343222 G A 37 91 BRCA TCGA-A8-A09G ERBB3 SNP Missense_Mutation 12 56490928 C G 32 65 BRCA TCGA-A8-A09G ERBB3 SNP Missense_Mutation 12 56492633 A G 11 92 BRCA TCGA-A8-A09G SCNN1A SNP Missense_Mutation 12 6458367 G C 33 76 BRCA TCGA-A8-A09G CPSF6 SNP Missense_Mutation 12 69656161 G A 37 88 BRCA TCGA-A8-A09G ATP2B1 SNP Silent 12 90003786 C T 24 59 BRCA TCGA-A8-A09G ABCC4 SNP Missense_Mutation 13 95899945 G A 45 70 BRCA TCGA-A8-A09G RNASE9 SNP Nonsense_Mutation 14 21024983 G T 36 47 BRCA TCGA-A8-A09G MYH7 SNP Silent 14 23884898 C T 30 53 BRCA TCGA-A8-A09G EIF2B2 SNP Missense_Mutation 14 75470270 G A 37 100 BRCA TCGA-A8-A09G ALKBH1 SNP Missense_Mutation 14 78140379 C G 32 59 BRCA TCGA-A8-A09G DIO2 SNP Silent 14 80677773 G A 33 69 BRCA TCGA-A8-A09G TRIP11 SNP Missense_Mutation 14 92465767 A G 13 76 BRCA TCGA-A8-A09G SERPINA5 SNP Missense_Mutation 14 95053915 C G 32 55 BRCA TCGA-A8-A09G GABRG3 SNP Missense_Mutation 15 27725853 C T 28 99 BRCA TCGA-A8-A09G RYR3 SNP Missense_Mutation 15 33952600 C T 27 98 BRCA TCGA-A8-A09G DISP2 SNP Nonsense_Mutation 15 40659881 C G 29 87 BRCA TCGA-A8-A09G SLC30A4 SNP Missense_Mutation 15 45778900 C G 29 68 BRCA TCGA-A8-A09G GCOM1 SNP Silent 15 57931737 C T 31 46 BRCA TCGA-A8-A09G TLN2 SNP Missense_Mutation 15 62990048 G A 37 71 BRCA TCGA-A8-A09G ACAN SNP Silent 15 89398480 G A 43 52 BRCA TCGA-A8-A09G PLK1 SNP Missense_Mutation 16 23692315 C G 30 92 BRCA TCGA-A8-A09G SEZ6L2 SNP Silent 16 29907123 C A 30 53 BRCA TCGA-A8-A09G SRCAP SNP Missense_Mutation 16 30747578 G A 45 98 BRCA TCGA-A8-A09G THOC6 SNP Silent 16 3075810 G A 33 92 BRCA TCGA-A8-A09G ITGAX SNP Silent 16 31374515 C G 32 54 BRCA TCGA-A8-A09G SLC6A10P SNP Missense_Mutation 16 32891004 G A 45 83 BRCA TCGA-A8-A09G ZFHX3 SNP Missense_Mutation 16 72923839 C G 18 86 BRCA TCGA-A8-A09G RHOT1 SNP Missense_Mutation 17 30503029 G A 45 86 BRCA TCGA-A8-A09G RPL19 SNP Missense_Mutation 17 37359326 G A 33 99 BRCA TCGA-A8-A09G PSMD3 SNP Silent 17 38140650 C T 29 54 BRCA TCGA-A8-A09G TUBG2 SNP Missense_Mutation 17 40811929 G A 37 83 BRCA TCGA-A8-A09G MEOX1 SNP Missense_Mutation 17 41738538 C T 26 63 BRCA TCGA-A8-A09G GFAP SNP Missense_Mutation 17 42990641 G A 41 99 BRCA TCGA-A8-A09G MED13 SNP Missense_Mutation 17 60043906 T A 62 89 BRCA TCGA-A8-A09G KCNH6 SNP Missense_Mutation 17 61622443 G C 41 94 BRCA TCGA-A8-A09G NLGN2 SNP Missense_Mutation 17 7319011 G C 45 96 BRCA TCGA-A8-A09G RNF213 DEL Frame_Shift_Del 17 78318546 G - 35 46 BRCA TCGA-A8-A09G NPTX1 SNP Missense_Mutation 17 78447148 A T 8 87 BRCA TCGA-A8-A09G CCDC137 SNP Missense_Mutation 17 79634810 G C 33 49 BRCA TCGA-A8-A09G ABR SNP Missense_Mutation 17 959301 G A 33 85 BRCA TCGA-A8-A09G IMPACT SNP Missense_Mutation 18 22007922 G C 41 86 BRCA TCGA-A8-A09G DSEL SNP Silent 18 65179785 G A 45 61 BRCA TCGA-A8-A09G SYDE1 SNP Missense_Mutation 19 15224573 C A 30 53 BRCA TCGA-A8-A09G TMEM38A SNP Nonsense_Mutation 19 16799102 C T 29 57 BRCA TCGA-A8-A09G USE1 SNP Silent 19 17330616 C G 29 49 BRCA TCGA-A8-A09G GRAMD1A SNP Missense_Mutation 19 35512464 G A 45 92 BRCA TCGA-A8-A09G ZNF527 SNP Missense_Mutation 19 37880530 G A 45 53 BRCA TCGA-A8-A09G ZNF781 SNP Missense_Mutation 19 38160656 A C 1 59 BRCA TCGA-A8-A09G ZNF573 SNP Nonsense_Mutation 19 38230531 G C 45 83 BRCA TCGA-A8-A09G ACTN4 SNP Missense_Mutation 19 39217651 G A 37 94 BRCA TCGA-A8-A09G BCKDHA SNP Missense_Mutation 19 41928172 C A 29 82 BRCA TCGA-A8-A09G GPR77 SNP Missense_Mutation 19 47845056 G A 41 81 BRCA TCGA-A8-A09G TICAM1 SNP Missense_Mutation 19 4817009 C G 31 47 BRCA TCGA-A8-A09G KLK6 SNP Missense_Mutation 19 51466645 C T 29 49 BRCA TCGA-A8-A09G KLK12 SNP Missense_Mutation 19 51532698 G A 43 84 BRCA TCGA-A8-A09G SIGLEC7 SNP Missense_Mutation 19 51647792 C G 32 66 BRCA TCGA-A8-A09G ZNF808 SNP Missense_Mutation 19 53057682 C G 29 83 BRCA TCGA-A8-A09G LILRA2 SNP Silent 19 55098711 C A 29 52 BRCA TCGA-A8-A09G PEG3 SNP Missense_Mutation 19 57327706 C T 29 63 BRCA TCGA-A8-A09G ZNF547 SNP Missense_Mutation 19 57889020 C G 29 38 BRCA TCGA-A8-A09G C19orf59 SNP Missense_Mutation 19 7743274 G C 41 58 BRCA TCGA-A8-A09G MUC16 SNP Missense_Mutation 19 9026209 C G 32 50 BRCA TCGA-A8-A09G MUC16 SNP Missense_Mutation 19 9048939 G C 33 28 BRCA TCGA-A8-A09G MUC16 SNP Silent 19 9064816 A G 4 44 BRCA TCGA-A8-A09G NCK2 SNP Silent 2 106509512 C T 32 57 BRCA TCGA-A8-A09G NTSR2 SNP Silent 2 11800210 G A 46 54 BRCA TCGA-A8-A09G WDR33 SNP Missense_Mutation 2 128463946 G C 33 90 BRCA TCGA-A8-A09G UGGT1 SNP Missense_Mutation 2 128944345 C G 32 100 BRCA TCGA-A8-A09G MCM6 SNP Splice_site 2 136598406 C G 29 69 BRCA TCGA-A8-A09G ZEB2 SNP Missense_Mutation 2 145147383 C T 31 100 BRCA TCGA-A8-A09G LYPD6 SNP Nonsense_Mutation 2 150325179 C T 29 84 BRCA TCGA-A8-A09G FMNL2 SNP Splice_site 2 153488524 C G 32 51 BRCA TCGA-A8-A09G PKP4 SNP Missense_Mutation 2 159481927 G C 33 81 BRCA TCGA-A8-A09G SCN2A SNP Silent 2 166170594 G A 45 50 BRCA TCGA-A8-A09G LRP2 SNP Missense_Mutation 2 170082970 C G 29 100 BRCA TCGA-A8-A09G RAPGEF4 SNP Missense_Mutation 2 173885435 G A 37 98 BRCA TCGA-A8-A09G GPR155 SNP Missense_Mutation 2 175337813 C T 30 97 BRCA TCGA-A8-A09G TTN SNP Missense_Mutation 2 179414943 C G 30 100 BRCA TCGA-A8-A09G TTN SNP Silent 2 179417111 C T 29 56 BRCA TCGA-A8-A09G TTN SNP Missense_Mutation 2 179417322 C G 32 80 BRCA TCGA-A8-A09G TTN SNP Missense_Mutation 2 179417407 C T 29 80 BRCA TCGA-A8-A09G TTN SNP Missense_Mutation 2 179419748 C T 32 100 BRCA TCGA-A8-A09G TTN SNP Missense_Mutation 2 179605967 A G 10 91 BRCA TCGA-A8-A09G MYO1B SNP Missense_Mutation 2 192257811 G A 33 100 BRCA TCGA-A8-A09G CCDC150 SNP Missense_Mutation 2 197531552 C T 29 61 BRCA TCGA-A8-A09G PLEKHM3 SNP Silent 2 208841568 C T 29 68 BRCA TCGA-A8-A09G COL6A3 SNP Missense_Mutation 2 238280722 C A 26 100 BRCA TCGA-A8-A09G HDAC4 SNP Missense_Mutation 2 240003825 G C 33 74 BRCA TCGA-A8-A09G IFT172 SNP Missense_Mutation 2 27672946 G C 45 66 BRCA TCGA-A8-A09G THADA SNP Missense_Mutation 2 43657437 T A 58 61 BRCA TCGA-A8-A09G GFPT1 SNP Missense_Mutation 2 69601147 C A 29 97 BRCA TCGA-A8-A09G ATP6V1B1 SNP Missense_Mutation 2 71186192 G A 36 53 BRCA TCGA-A8-A09G CCDC142 SNP Missense_Mutation 2 74709786 G A 39 46 BRCA TCGA-A8-A09G LRRTM4 SNP Missense_Mutation 2 77746900 C T 32 68 BRCA TCGA-A8-A09G KANSL3 SNP Missense_Mutation 2 97279281 G C 33 75 BRCA TCGA-A8-A09G FLRT3 SNP Nonsense_Mutation 20 14307923 G C 45 100 BRCA TCGA-A8-A09G NINL SNP Missense_Mutation 20 25442244 C G 29 74 BRCA TCGA-A8-A09G CPXM1 SNP Missense_Mutation 20 2776783 C G 31 56 BRCA TCGA-A8-A09G C20orf194 SNP Silent 20 3275242 C G 29 66 BRCA TCGA-A8-A09G ZNF831 SNP Silent 20 57769623 C A 29 49 BRCA TCGA-A8-A09G DIDO1 SNP Missense_Mutation 20 61542600 C G 32 53 BRCA TCGA-A8-A09G CECR2 SNP Missense_Mutation 22 17978481 G A 45 84 BRCA TCGA-A8-A09G DGCR14 SNP Missense_Mutation 22 19127373 C G 29 72 BRCA TCGA-A8-A09G DGCR14 SNP Missense_Mutation 22 19130257 G A 39 58 BRCA TCGA-A8-A09G CCDC117 SNP Silent 22 29177137 G A 41 54 BRCA TCGA-A8-A09G NF2 SNP Missense_Mutation 22 30069291 G A 45 100 BRCA TCGA-A8-A09G NF2 SNP Silent 22 30069335 G A 33 88 BRCA TCGA-A8-A09G RFPL3 SNP Missense_Mutation 22 32754312 C G 32 55 BRCA TCGA-A8-A09G GCAT SNP Missense_Mutation 22 38206084 G A 45 59 BRCA TCGA-A8-A09G XKRX SNP Missense_Mutation 23 100183269 C G 29 58 BRCA TCGA-A8-A09G COL4A6 SNP Missense_Mutation 23 107435807 T C 52 57 BRCA TCGA-A8-A09G CAPN6 SNP Missense_Mutation 23 110489936 C G 30 59 BRCA TCGA-A8-A09G CUL4B SNP Missense_Mutation 23 119660675 C T 29 97 BRCA TCGA-A8-A09G SAGE1 SNP Missense_Mutation 23 134987483 C T 29 47 BRCA TCGA-A8-A09G PLXNA3 SNP Missense_Mutation 23 153689550 G A 40 77 BRCA TCGA-A8-A09G MAGEB10 SNP Missense_Mutation 23 27839430 C G 31 47 BRCA TCGA-A8-A09G FAM123B SNP Missense_Mutation 23 63413064 C T 29 59 BRCA TCGA-A8-A09G MTMR8 SNP Missense_Mutation 23 63445342 G T 45 39 BRCA TCGA-A8-A09G DLG3 SNP Missense_Mutation 23 69669608 A T 11 70 BRCA TCGA-A8-A09G NAP1L3 SNP Silent 23 92927869 A G 16 53 BRCA TCGA-A8-A09G ITGB5 SNP Missense_Mutation 3 124560333 C G 32 69 BRCA TCGA-A8-A09G PPP2R3A SNP Missense_Mutation 3 135825064 G C 45 97 BRCA TCGA-A8-A09G AADACL2 DEL Frame_Shift_Del 3 151474795 G - 45 61 BRCA TCGA-A8-A09G RFTN1 SNP Missense_Mutation 3 16450944 C G 32 77 BRCA TCGA-A8-A09G EIF4A2 SNP Missense_Mutation 3 186504030 G C 45 92 BRCA TCGA-A8-A09G EIF4A2 DEL Frame_Shift_Del 3 186504350 GA - 45 92 BRCA TCGA-A8-A09G WDR53 SNP Silent 3 196287993 G A 45 58 BRCA TCGA-A8-A09G CHL1 SNP Missense_Mutation 3 423864 G A 48 59 BRCA TCGA-A8-A09G SLC25A20 SNP Missense_Mutation 3 48896002 C T 24 100 BRCA TCGA-A8-A09G RHOA SNP Missense_Mutation 3 49412905 C G 29 100 BRCA TCGA-A8-A09G C3orf74 SNP Missense_Mutation 3 52097254 G A 48 41 BRCA TCGA-A8-A09G RPP14 SNP Missense_Mutation 3 58296293 C T 31 55 BRCA TCGA-A8-A09G CRYBG3 SNP Missense_Mutation 3 97600022 C A 17 59 BRCA TCGA-A8-A09G DDIT4L SNP Missense_Mutation 4 101111134 C T 25 82 BRCA TCGA-A8-A09G ARFIP1 SNP Missense_Mutation 4 153802210 G C 33 72 BRCA TCGA-A8-A09G SPATA4 SNP Missense_Mutation 4 177113882 G A 45 79 BRCA TCGA-A8-A09G GPR125 SNP Silent 4 22390354 C T 29 57 BRCA TCGA-A8-A09G HTT SNP Silent 4 3134377 C T 29 41 BRCA TCGA-A8-A09G WDFY3 INS Frame_Shift_Ins 4 85687113 - T 48 100 BRCA TCGA-A8-A09G PAM SNP Silent 5 102343195 C T 29 72 BRCA TCGA-A8-A09G AFF4 SNP Missense_Mutation 5 132224807 G C 33 79 BRCA TCGA-A8-A09G CDKL3 SNP Missense_Mutation 5 133657539 G C 41 78 BRCA TCGA-A8-A09G PCDHGA9 SNP Nonsense_Mutation 5 140784572 G T 41 60 BRCA TCGA-A8-A09G TCERG1 SNP Silent 5 145888737 C T 29 63 BRCA TCGA-A8-A09G FAT2 SNP Missense_Mutation 5 150935931 C G 32 91 BRCA TCGA-A8-A09G GRIA1 SNP Missense_Mutation 5 153190725 G A 46 77 BRCA TCGA-A8-A09G GMCL1L SNP Missense_Mutation 5 177613008 G C 45 61 BRCA TCGA-A8-A09G ERBB2IP SNP Missense_Mutation 5 65338994 G A 45 98 BRCA TCGA-A8-A09G TNPO1 SNP Nonsense_Mutation 5 72151660 C T 29 95 BRCA TCGA-A8-A09G TNPO1 SNP Silent 5 72161500 C T 29 56 BRCA TCGA-A8-A09G GPR98 SNP Missense_Mutation 5 90079129 G A 45 89 BRCA TCGA-A8-A09G GRIK2 SNP Missense_Mutation 6 102124591 A G 1 79 BRCA TCGA-A8-A09G FRK SNP Silent 6 116289838 G A 45 48 BRCA TCGA-A8-A09G LAMA2 SNP Missense_Mutation 6 129513923 C G 29 63 BRCA TCGA-A8-A09G DTNBP1 SNP Missense_Mutation 6 15524673 G C 42 42 BRCA TCGA-A8-A09G LRRC16A SNP Silent 6 25500451 C T 29 70 BRCA TCGA-A8-A09G DHX16 SNP Missense_Mutation 6 30624478 C A 27 98 BRCA TCGA-A8-A09G CLIC1 SNP Missense_Mutation 6 31701957 G T 45 61 BRCA TCGA-A8-A09G SLC22A23 SNP Missense_Mutation 6 3298444 G A 43 90 BRCA TCGA-A8-A09G BAK1 SNP Missense_Mutation 6 33541599 C T 31 64 BRCA TCGA-A8-A09G DNAH8 SNP Missense_Mutation 6 38950129 G A 37 100 BRCA TCGA-A8-A09G MEP1A SNP Missense_Mutation 6 46761439 C T 29 58 BRCA TCGA-A8-A09G KIAA1009 SNP Missense_Mutation 6 84871614 C T 29 73 BRCA TCGA-A8-A09G ZCWPW1 SNP Missense_Mutation 7 100016761 G C 33 66 BRCA TCGA-A8-A09G DNAH11 SNP Missense_Mutation 7 21640303 G C 41 68 BRCA TCGA-A8-A09G SFRP4 SNP Missense_Mutation 7 37951790 G C 33 98 BRCA TCGA-A8-A09G ASL SNP Missense_Mutation 7 65557588 C G 29 57 BRCA TCGA-A8-A09G STYXL1 SNP Missense_Mutation 7 75634621 C G 29 80 BRCA TCGA-A8-A09G ABCB1 SNP Silent 7 87225097 G A 45 51 BRCA TCGA-A8-A09G SAMD9L SNP Missense_Mutation 7 92764322 G C 33 58 BRCA TCGA-A8-A09G ZNF3 SNP Silent 7 99669144 G A 45 58 BRCA TCGA-A8-A09G RGS22 SNP Missense_Mutation 8 101020623 C T 30 87 BRCA TCGA-A8-A09G LONRF1 SNP Missense_Mutation 8 12598445 G A 36 67 BRCA TCGA-A8-A09G CHMP7 SNP Missense_Mutation 8 23116332 C G 29 96 BRCA TCGA-A8-A09G ESRP1 SNP Missense_Mutation 8 95654281 C G 31 61 BRCA TCGA-A8-A09G BAAT SNP Missense_Mutation 9 104133644 C T 29 74 BRCA TCGA-A8-A09G IKBKAP SNP Missense_Mutation 9 111668605 C T 32 52 BRCA TCGA-A8-A09G IKBKAP SNP Missense_Mutation 9 111670591 C T 32 53 BRCA TCGA-A8-A09G KIAA0368 SNP Silent 9 114156470 G C 45 56 BRCA TCGA-A8-A09G C5 SNP Missense_Mutation 9 123785712 G T 41 62 BRCA TCGA-A8-A09G SWI5 SNP Splice_site 9 131050994 G C 45 57 BRCA TCGA-A8-A09G MPDZ SNP Missense_Mutation 9 13222437 C T 32 67 BRCA TCGA-A8-A09G C9orf93 SNP Missense_Mutation 9 15744289 G A 45 75 BRCA TCGA-A8-A09G IFNK SNP Missense_Mutation 9 27524397 C A 29 48 BRCA TCGA-A8-A09G CNTNAP3B SNP Silent 9 43822569 C T 32 67 BRCA TCGA-A8-A09I ATP1A2 SNP Missense_Mutation 1 160099959 G A 38 95 BRCA TCGA-A8-A09I PPOX SNP Missense_Mutation 1 161140244 G C 43 87 BRCA TCGA-A8-A09I SPEN INS Frame_Shift_Ins 1 16255129 - C 50 51 BRCA TCGA-A8-A09I DDR2 SNP Silent 1 162746031 G A 47 74 BRCA TCGA-A8-A09I F5 SNP Missense_Mutation 1 169519203 A T 13 90 BRCA TCGA-A8-A09I F5 SNP Missense_Mutation 1 169525950 C T 27 100 BRCA TCGA-A8-A09I HMCN1 SNP Missense_Mutation 1 185958690 C T 29 97 BRCA TCGA-A8-A09I ASPM SNP Missense_Mutation 1 197065231 G C 45 81 BRCA TCGA-A8-A09I CNTN2 SNP Splice_site 1 205038689 G A 39 77 BRCA TCGA-A8-A09I PLXNA2 SNP Missense_Mutation 1 208391168 C T 23 56 BRCA TCGA-A8-A09I SMYD3 SNP Nonsense_Mutation 1 246490556 G A 48 85 BRCA TCGA-A8-A09I KDM4A SNP Missense_Mutation 1 44134883 G A 45 86 BRCA TCGA-A8-A09I LPHN2 SNP Missense_Mutation 1 82408979 G A 37 100 BRCA TCGA-A8-A09I KIAA1107 SNP Missense_Mutation 1 92647295 G C 37 64 BRCA TCGA-A8-A09I PSD SNP Missense_Mutation 10 104170687 C T 29 94 BRCA TCGA-A8-A09I STOX1 SNP Missense_Mutation 10 70644505 G A 38 100 BRCA TCGA-A8-A09I UNC5B SNP Silent 10 73048335 G A 40 37 BRCA TCGA-A8-A09I ECD SNP Missense_Mutation 10 74894479 G C 44 59 BRCA TCGA-A8-A09I MYOF SNP Silent 10 95072846 G C 33 53 BRCA TCGA-A8-A09I MYOF SNP Missense_Mutation 10 95185852 C T 23 82 BRCA TCGA-A8-A09I PLCE1 SNP Missense_Mutation 10 96018630 G A 33 98 BRCA TCGA-A8-A09I ZBTB16 SNP Missense_Mutation 11 113935031 T G 60 57 BRCA TCGA-A8-A09I OR4A47 SNP Silent 11 48511196 C A 32 50 BRCA TCGA-A8-A09I ENSG00000205046 SNP Missense_Mutation 11 51458848 A G 6 54 BRCA TCGA-A8-A09I OR56A5 SNP Missense_Mutation 11 5989153 G A 33 67 BRCA TCGA-A8-A09I TRIM66 SNP Missense_Mutation 11 8642703 C A 28 66 BRCA TCGA-A8-A09I TRIM49 SNP Missense_Mutation 11 89537373 C G 29 65 BRCA TCGA-A8-A09I ALDH1L2 SNP Missense_Mutation 12 105467686 A G 14 92 BRCA TCGA-A8-A09I HCAR2 SNP Silent 12 123187141 G A 45 52 BRCA TCGA-A8-A09I DHX37 SNP Missense_Mutation 12 125435302 A T 1 70 BRCA TCGA-A8-A09I NAB2 SNP Splice_site 12 57484909 C A 26 70 BRCA TCGA-A8-A09I MYO16 DEL In_Frame_Del 13 109445934 CTT - 20 56 BRCA TCGA-A8-A09I SACS SNP Missense_Mutation 13 23906002 G A 36 66 BRCA TCGA-A8-A09I NUPL1 SNP Missense_Mutation 13 25889548 A T 2 44 BRCA TCGA-A8-A09I NUFIP1 SNP Silent 13 45554947 C T 24 54 BRCA TCGA-A8-A09I CAB39L SNP Silent 13 49925033 C T 32 70 BRCA TCGA-A8-A09I HAUS4 SNP Missense_Mutation 14 23419608 C G 30 54 BRCA TCGA-A8-A09I PCK2 SNP Silent 14 24572735 C T 19 29 BRCA TCGA-A8-A09I ZNF770 SNP Missense_Mutation 15 35273900 C T 30 60 BRCA TCGA-A8-A09I RPAP1 SNP Missense_Mutation 15 41823388 A T 2 72 BRCA TCGA-A8-A09I MGA SNP Missense_Mutation 15 42003252 C G 32 61 BRCA TCGA-A8-A09I ADAMTSL3 SNP Silent 15 84611516 C A 28 56 BRCA TCGA-A8-A09I ZSCAN2 SNP Missense_Mutation 15 85165048 G A 39 55 BRCA TCGA-A8-A09I ZNF710 SNP Missense_Mutation 15 90610490 G A 37 69 BRCA TCGA-A8-A09I GSPT1 SNP Missense_Mutation 16 11980419 A G 3 84 BRCA TCGA-A8-A09I HS3ST2 SNP Missense_Mutation 16 22926408 G A 40 84 BRCA TCGA-A8-A09I ALDOA SNP Missense_Mutation 16 30081176 G C 33 100 BRCA TCGA-A8-A09I SIAH1 SNP Missense_Mutation 16 48396375 T C 49 48 BRCA TCGA-A8-A09I SLC7A6OS SNP Missense_Mutation 16 68335255 G C 38 59 BRCA TCGA-A8-A09I FANCA SNP Missense_Mutation 16 89877135 G C 45 66 BRCA TCGA-A8-A09I NCOR1 SNP Nonsense_Mutation 17 15975531 G A 39 76 BRCA TCGA-A8-A09I SLC6A4 SNP Splice_site 17 28538331 G A 40 99 BRCA TCGA-A8-A09I FNDC8 SNP Silent 17 33456560 C T 29 75 BRCA TCGA-A8-A09I GPATCH8 SNP Missense_Mutation 17 42477554 C G 30 75 BRCA TCGA-A8-A09I C17orf104 SNP Missense_Mutation 17 42744610 T C 64 66 BRCA TCGA-A8-A09I SLC25A11 SNP Silent 17 4842372 C G 29 48 BRCA TCGA-A8-A09I RAD51C SNP Missense_Mutation 17 56811530 G C 33 75 BRCA TCGA-A8-A09I LLGL2 SNP Missense_Mutation 17 73564904 G C 41 86 BRCA TCGA-A8-A09I KLHL14 SNP Silent 18 30321922 G A 40 46 BRCA TCGA-A8-A09I DLGAP1 SNP Silent 18 3879838 C T 27 49 BRCA TCGA-A8-A09I SETBP1 SNP Missense_Mutation 18 42643228 G C 33 61 BRCA TCGA-A8-A09I TSHZ1 SNP Missense_Mutation 18 72998075 C T 30 25 BRCA TCGA-A8-A09I CIRBP SNP Missense_Mutation 19 1272368 G A 44 60 BRCA TCGA-A8-A09I WDR83 SNP Missense_Mutation 19 12783926 G T 43 95 BRCA TCGA-A8-A09I IL12RB1 SNP Silent 19 18180447 C T 19 24 BRCA TCGA-A8-A09I PRODH2 SNP Silent 19 36303324 G A 45 14 BRCA TCGA-A8-A09I SHD SNP Missense_Mutation 19 4284824 G T 35 60 BRCA TCGA-A8-A09I CA11 SNP Nonsense_Mutation 19 49142645 G A 45 59 BRCA TCGA-A8-A09I SIGLEC5 SNP Missense_Mutation 19 52149665 C T 31 67 BRCA TCGA-A8-A09I LILRA1 SNP Missense_Mutation 19 55106642 G T 48 54 BRCA TCGA-A8-A09I ZNF549 SNP Missense_Mutation 19 58049495 G A 45 46 BRCA TCGA-A8-A09I SLC9A2 SNP Silent 2 103310911 C G 29 37 BRCA TCGA-A8-A09I WDR33 DEL Frame_Shift_Del 2 128464048 C - 30 81 BRCA TCGA-A8-A09I KCNH7 SNP Silent 2 163694986 G A 33 49 BRCA TCGA-A8-A09I XIRP2 SNP Silent 2 168074744 C T 19 43 BRCA TCGA-A8-A09I AOX1 SNP Missense_Mutation 2 201499591 C G 29 62 BRCA TCGA-A8-A09I LOC100288694 SNP Missense_Mutation 2 25468981 C T 31 62 BRCA TCGA-A8-A09I ACTR2 SNP Silent 2 65480995 C T 29 59 BRCA TCGA-A8-A09I IAH1 SNP Missense_Mutation 2 9628448 G C 41 73 BRCA TCGA-A8-A09I KANSL3 SNP Missense_Mutation 2 97278599 G A 40 70 BRCA TCGA-A8-A09I MACROD2 SNP Missense_Mutation 20 15918186 G A 45 56 BRCA TCGA-A8-A09I SPINT3 SNP Missense_Mutation 20 44141392 C G 29 49 BRCA TCGA-A8-A09I BACE2 SNP Missense_Mutation 21 42609558 C G 32 53 BRCA TCGA-A8-A09I PI4KA SNP Missense_Mutation 22 21119129 G T 33 100 BRCA TCGA-A8-A09I GPRASP2 SNP Missense_Mutation 23 101969921 A T 10 41 BRCA TCGA-A8-A09I PRPS2 SNP Silent 23 12817443 G A 40 25 BRCA TCGA-A8-A09I BCORL1 SNP Missense_Mutation 23 129147771 G A 46 59 BRCA TCGA-A8-A09I MAGEA12 SNP Nonsense_Mutation 23 151900209 T A 63 55 BRCA TCGA-A8-A09I SCML1 SNP Nonsense_Mutation 23 17768275 G T 45 7 BRCA TCGA-A8-A09I GPR64 SNP Silent 23 19021145 C T 19 37 BRCA TCGA-A8-A09I HUWE1 SNP Missense_Mutation 23 53560335 C G 29 93 BRCA TCGA-A8-A09I HUWE1 SNP Missense_Mutation 23 53562391 C G 32 50 BRCA TCGA-A8-A09I HDAC8 SNP Missense_Mutation 23 71681927 G A 40 76 BRCA TCGA-A8-A09I IGSF11 SNP Missense_Mutation 3 118624539 G A 39 63 BRCA TCGA-A8-A09I ECE2 SNP Missense_Mutation 3 184009866 G A 38 94 BRCA TCGA-A8-A09I DCLK3 SNP Missense_Mutation 3 36779994 G A 39 54 BRCA TCGA-A8-A09I BHLHE40 DEL In_Frame_Del 3 5023162 AGCAGAAAA - 7 79 BRCA TCGA-A8-A09I GUF1 SNP Missense_Mutation 4 44697709 C A 25 96 BRCA TCGA-A8-A09I LNX1 SNP Missense_Mutation 4 54362417 G A 44 58 BRCA TCGA-A8-A09I PTPN13 SNP Missense_Mutation 4 87643534 G A 41 84 BRCA TCGA-A8-A09I GRID2 SNP Missense_Mutation 4 94376970 C T 32 100 BRCA TCGA-A8-A09I FNIP1 SNP Missense_Mutation 5 130797633 G A 37 64 BRCA TCGA-A8-A09I PCDHB5 SNP Silent 5 140517347 C T 27 49 BRCA TCGA-A8-A09I PCDHB10 SNP Silent 5 140573346 C T 27 35 BRCA TCGA-A8-A09I SPINK14 SNP Missense_Mutation 5 147553826 G C 45 55 BRCA TCGA-A8-A09I ATP10B SNP Missense_Mutation 5 160115005 T G 62 80 BRCA TCGA-A8-A09I MTMR12 SNP Silent 5 32263227 G A 33 65 BRCA TCGA-A8-A09I RXFP3 SNP Missense_Mutation 5 33937086 C T 27 62 BRCA TCGA-A8-A09I HIST1H3B SNP Missense_Mutation 6 26032069 C T 32 98 BRCA TCGA-A8-A09I ZNF323 SNP Silent 6 28297245 G A 41 23 BRCA TCGA-A8-A09I FRS3 SNP Missense_Mutation 6 41739230 G T 44 47 BRCA TCGA-A8-A09I PHF3 SNP Missense_Mutation 6 64422949 A G 4 55 BRCA TCGA-A8-A09I SNAP91 SNP Missense_Mutation 6 84371241 A T 4 62 BRCA TCGA-A8-A09I CPA5 SNP Silent 7 129989884 G A 45 66 BRCA TCGA-A8-A09I KLHL7 SNP Missense_Mutation 7 23213889 G A 41 96 BRCA TCGA-A8-A09I GUSB SNP Missense_Mutation 7 65439594 T C 49 88 BRCA TCGA-A8-A09I NCF1 SNP Missense_Mutation 7 74193727 C G 29 61 BRCA TCGA-A8-A09I ABCB4 SNP Silent 7 87060834 C T 23 46 BRCA TCGA-A8-A09I UBR5 SNP Silent 8 103287948 T A 55 57 BRCA TCGA-A8-A09I ZFPM2 SNP Missense_Mutation 8 106813942 G A 46 87 BRCA TCGA-A8-A09I KCNV1 SNP Missense_Mutation 8 110986391 C A 27 77 BRCA TCGA-A8-A09I ASAP1 SNP Missense_Mutation 8 131191529 A C 14 91 BRCA TCGA-A8-A09I BRF2 SNP Missense_Mutation 8 37702391 C A 17 94 BRCA TCGA-A8-A09I FAM110B SNP Silent 8 59059800 C T 27 42 BRCA TCGA-A8-A09I PSKH2 SNP Missense_Mutation 8 87060836 C T 31 51 BRCA TCGA-A8-A09I GABBR2 SNP Missense_Mutation 9 101052888 C G 31 83 BRCA TCGA-A8-A09I RNF20 SNP Missense_Mutation 9 104313065 G A 45 98 BRCA TCGA-A8-A09I SLC25A25 SNP Missense_Mutation 9 130868675 C T 29 76 BRCA TCGA-A8-A09I NUP214 SNP Missense_Mutation 9 134014692 G C 41 94 BRCA TCGA-A8-A09I HAUS6 SNP Missense_Mutation 9 19082942 A C 1 64 BRCA TCGA-A8-A09I FOCAD SNP Missense_Mutation 9 20770124 C T 28 69 BRCA TCGA-A8-A09I LINGO2 SNP Missense_Mutation 9 27950444 C T 32 100 BRCA TCGA-A8-A09I ANKRD18B SNP Silent 9 33533508 C T 18 48 BRCA TCGA-A8-A09I CCIN SNP Missense_Mutation 9 36170527 A G 3 74 BRCA TCGA-A8-A09I PTPRD SNP Missense_Mutation 9 8524958 G C 37 100 BRCA TCGA-A8-A09K CASZ1 SNP Missense_Mutation 1 10719985 G A 38 80 BRCA TCGA-A8-A09K SLC22A15 SNP Nonsense_Mutation 1 116609327 C T 17 83 BRCA TCGA-A8-A09K THBS3 SNP Missense_Mutation 1 155169883 T A 52 87 BRCA TCGA-A8-A09K NVL SNP Splice_site 1 224415372 C T 30 74 BRCA TCGA-A8-A09K RGS7 SNP Splice_Site 1 241094016 C T 18 97 BRCA TCGA-A8-A09K ASB13 SNP Missense_Mutation 10 5682712 T G 56 67 BRCA TCGA-A8-A09K IFITM5 SNP Missense_Mutation 11 298552 C G 24 66 BRCA TCGA-A8-A09K MYEOV INS Frame_Shift_Ins 11 69063518 - A 48 42 BRCA TCGA-A8-A09K KCTD14 SNP Missense_Mutation 11 77734259 T C 55 43 BRCA TCGA-A8-A09K C12orf65 SNP Silent 12 123738230 C T 23 53 BRCA TCGA-A8-A09K KRT6C SNP Missense_Mutation 12 52863207 G T 48 62 BRCA TCGA-A8-A09K DYNC1H1 SNP Missense_Mutation 14 102467927 G C 46 100 BRCA TCGA-A8-A09K GPR137C SNP Silent 14 53098946 T C 60 59 BRCA TCGA-A8-A09K UBFD1 SNP Missense_Mutation 16 23573549 A G 1 91 BRCA TCGA-A8-A09K ZNF48 SNP Missense_Mutation 16 30409119 C T 30 58 BRCA TCGA-A8-A09K TIAF1 SNP Missense_Mutation 17 27401124 C T 29 53 BRCA TCGA-A8-A09K PLEKHH3 SNP Splice_Site 17 40826429 T C 55 58 BRCA TCGA-A8-A09K TMUB2 SNP Missense_Mutation 17 42266856 C T 22 52 BRCA TCGA-A8-A09K NEURL4 SNP Splice_site 17 7226882 C G 30 96 BRCA TCGA-A8-A09K NEDD4L SNP Missense_Mutation 18 56033400 T A 62 93 BRCA TCGA-A8-A09K ANKRD12 DEL Frame_Shift_Del 18 9256071 AAAC - 13 92 BRCA TCGA-A8-A09K PKN1 SNP Silent 19 14569083 C A 27 74 BRCA TCGA-A8-A09K TMEM143 SNP Missense_Mutation 19 48845963 G A 42 80 BRCA TCGA-A8-A09K BIRC8 SNP Missense_Mutation 19 53793429 T C 63 50 BRCA TCGA-A8-A09K ZNF419 SNP Missense_Mutation 19 58005412 C T 30 53 BRCA TCGA-A8-A09K AFF3 DEL In_Frame_Del 2 100194818 GCA - 46 69 BRCA TCGA-A8-A09K AFF3 DEL Frame_Shift_Del 2 100194823 CC - 30 82 BRCA TCGA-A8-A09K ITGAV DEL Frame_Shift_Del 2 187540366 CCAAGTTGGGAGATTA - 26 69 BRCA TCGA-A8-A09K SEPT2 SNP Missense_Mutation 2 242276852 G A 37 86 BRCA TCGA-A8-A09K SLC13A3 SNP Missense_Mutation 20 45188713 T C 52 69 BRCA TCGA-A8-A09K PMEPA1 SNP Missense_Mutation 20 56228121 C G 30 88 BRCA TCGA-A8-A09K PDE9A DEL Frame_Shift_Del 21 44119099 T - 55 15 BRCA TCGA-A8-A09K NXT2 SNP Missense_Mutation 23 108785738 C G 25 83 BRCA TCGA-A8-A09K SPANXN3 SNP Silent 23 142596806 G A 38 54 BRCA TCGA-A8-A09K CAPN7 SNP Splice_site 3 15270481 A G 10 90 BRCA TCGA-A8-A09K TIGD4 SNP Silent 4 153690942 C G 21 43 BRCA TCGA-A8-A09K DCHS2 SNP Silent 4 155242003 C T 29 53 BRCA TCGA-A8-A09K TEC SNP Missense_Mutation 4 48147561 T A 49 78 BRCA TCGA-A8-A09K C5orf56 SNP Missense_Mutation 5 131821895 C G 17 50 BRCA TCGA-A8-A09K TRPC7 SNP Missense_Mutation 5 135561905 T G 60 59 BRCA TCGA-A8-A09K SRA1 INS Frame_Shift_Ins 5 139931628 - GT 6 63 BRCA TCGA-A8-A09K PCDHB12 SNP Missense_Mutation 5 140590170 C T 23 79 BRCA TCGA-A8-A09K CSF1R SNP Silent 5 149449828 G A 40 36 BRCA TCGA-A8-A09K FLNC SNP Silent 7 128475402 G A 41 54 BRCA TCGA-A8-A09K CSMD1 SNP Missense_Mutation 8 2820779 C T 27 41 BRCA TCGA-A8-A09K MSC SNP Missense_Mutation 8 72756066 C G 28 63 BRCA TCGA-A8-A09K PALM2-AKAP2 SNP Missense_Mutation 9 112694275 T A 50 55 BRCA TCGA-A8-A09K FUBP3 SNP Missense_Mutation 9 133493263 G T 41 100 BRCA TCGA-A8-A09K FUBP3 SNP Nonsense_Mutation 9 133498185 C T 29 98 BRCA TCGA-A8-A09M TTF2 SNP Silent 1 117617614 T A 54 47 BRCA TCGA-A8-A09M TXNIP SNP Silent 1 145438841 C A 32 70 BRCA TCGA-A8-A09M KIAA0907 SNP Missense_Mutation 1 155893455 G C 34 95 BRCA TCGA-A8-A09M ATP1A2 SNP Silent 1 160105040 G A 40 39 BRCA TCGA-A8-A09M ASTN1 SNP Missense_Mutation 1 176833496 C A 23 63 BRCA TCGA-A8-A09M CACNA1E SNP Missense_Mutation 1 181480573 G T 43 100 BRCA TCGA-A8-A09M PIK3C2B SNP Missense_Mutation 1 204393999 C T 31 71 BRCA TCGA-A8-A09M NFASC SNP Missense_Mutation 1 204921156 A C 8 91 BRCA TCGA-A8-A09M CTSE SNP Missense_Mutation 1 206325403 G C 44 66 BRCA TCGA-A8-A09M TRAF3IP3 SNP Missense_Mutation 1 209954787 A C 7 53 BRCA TCGA-A8-A09M RYR2 SNP Silent 1 237890431 A G 14 48 BRCA TCGA-A8-A09M TRIM63 SNP Missense_Mutation 1 26386771 G C 39 64 BRCA TCGA-A8-A09M GRIK3 SNP Missense_Mutation 1 37270667 G C 42 93 BRCA TCGA-A8-A09M LRRC42 SNP Missense_Mutation 1 54423919 C G 20 69 BRCA TCGA-A8-A09M WLS SNP Silent 1 68564426 G A 41 48 BRCA TCGA-A8-A09M C1orf173 SNP Missense_Mutation 1 75037981 G A 33 45 BRCA TCGA-A8-A09M TACC2 SNP Silent 10 123985898 G A 37 52 BRCA TCGA-A8-A09M C10orf68 SNP Nonsense_Mutation 10 33165292 C T 23 43 BRCA TCGA-A8-A09M CUL2 SNP Missense_Mutation 10 35318465 T C 63 94 BRCA TCGA-A8-A09M VCL SNP Silent 10 75860849 A C 6 40 BRCA TCGA-A8-A09M DYNC2H1 SNP Missense_Mutation 11 103027330 G A 35 70 BRCA TCGA-A8-A09M ARHGAP32 SNP Nonsense_Mutation 11 128841030 C A 32 83 BRCA TCGA-A8-A09M PAX6 SNP Silent 11 31816281 G A 40 39 BRCA TCGA-A8-A09M MAPK8IP1 DEL Frame_Shift_Del 11 45923586 CTCGATCATC - 32 91 BRCA TCGA-A8-A09M OR4C45 SNP Missense_Mutation 11 48367409 C A 30 48 BRCA TCGA-A8-A09M TNKS1BP1 SNP Missense_Mutation 11 57075876 C T 23 74 BRCA TCGA-A8-A09M OR56A4 SNP Missense_Mutation 11 6023784 C A 26 52 BRCA TCGA-A8-A09M HEPHL1 SNP Missense_Mutation 11 93844724 C A 18 67 BRCA TCGA-A8-A09M RFX4 SNP Missense_Mutation 12 107048038 T C 58 90 BRCA TCGA-A8-A09M RFX4 SNP Missense_Mutation 12 107048046 C A 22 99 BRCA TCGA-A8-A09M TAS2R13 SNP Missense_Mutation 12 11061556 G C 33 46 BRCA TCGA-A8-A09M CCDC63 SNP Missense_Mutation 12 111291294 G A 39 58 BRCA TCGA-A8-A09M FLT3 SNP Missense_Mutation 13 28622415 T C 57 54 BRCA TCGA-A8-A09M EFS SNP Missense_Mutation 14 23828908 G T 47 72 BRCA TCGA-A8-A09M FSCB SNP Silent 14 44975063 A G 3 50 BRCA TCGA-A8-A09M MAP3K9 SNP Missense_Mutation 14 71197537 G C 43 98 BRCA TCGA-A8-A09M VSX2 SNP Silent 14 74726397 C T 21 59 BRCA TCGA-A8-A09M OTUD7A SNP Missense_Mutation 15 31851321 G A 46 100 BRCA TCGA-A8-A09M MYH11 SNP Missense_Mutation 16 15829383 G T 34 58 BRCA TCGA-A8-A09M GP2 SNP Silent 16 20335274 G C 47 55 BRCA TCGA-A8-A09M KIAA0556 SNP Missense_Mutation 16 27752151 C T 22 50 BRCA TCGA-A8-A09M ABCC12 SNP Missense_Mutation 16 48117854 T A 60 69 BRCA TCGA-A8-A09M EFCAB13 SNP Missense_Mutation 17 45452315 C G 20 54 BRCA TCGA-A8-A09M INTS2 SNP Silent 17 59967189 G A 36 78 BRCA TCGA-A8-A09M CACNG1 SNP Missense_Mutation 17 65052324 C A 32 81 BRCA TCGA-A8-A09M EPG5 SNP Missense_Mutation 18 43460065 G C 33 65 BRCA TCGA-A8-A09M ANKRD12 DEL Frame_Shift_Del 18 9258366 CAGT - 25 65 BRCA TCGA-A8-A09M ABCA7 SNP Missense_Mutation 19 1062286 G T 39 78 BRCA TCGA-A8-A09M CD97 SNP Missense_Mutation 19 14513412 C G 22 41 BRCA TCGA-A8-A09M APLP1 SNP Silent 19 36369538 G T 47 60 BRCA TCGA-A8-A09M TEX101 SNP Missense_Mutation 19 43920534 C G 17 55 BRCA TCGA-A8-A09M TRPM4 SNP Splice_Site 19 49703867 G A 33 96 BRCA TCGA-A8-A09M CEACAM18 DEL Frame_Shift_Del 19 51984913 GTGGCCTGTGA - 48 56 BRCA TCGA-A8-A09M RGPD3 SNP Silent 2 107041153 G A 40 56 BRCA TCGA-A8-A09M THSD7B SNP Nonsense_Mutation 2 138000078 C A 25 61 BRCA TCGA-A8-A09M LY75-CD302 SNP Silent 2 160750486 T A 51 61 BRCA TCGA-A8-A09M SESTD1 SNP Missense_Mutation 2 179986599 T C 52 65 BRCA TCGA-A8-A09M TRIP12 SNP Missense_Mutation 2 230656625 G A 41 100 BRCA TCGA-A8-A09M EPT1 SNP Missense_Mutation 2 26607960 C G 30 95 BRCA TCGA-A8-A09M CCDC104 SNP Missense_Mutation 2 55746978 A G 11 84 BRCA TCGA-A8-A09M SMEK2 DEL Frame_Shift_Del 2 55808732 C - 29 100 BRCA TCGA-A8-A09M DYSF SNP Missense_Mutation 2 71839859 A T 7 88 BRCA TCGA-A8-A09M RALGAPA2 SNP Silent 20 20493753 C T 17 65 BRCA TCGA-A8-A09M MANBAL SNP Missense_Mutation 20 35929733 C T 19 90 BRCA TCGA-A8-A09M PARD6B SNP Missense_Mutation 20 49366477 G C 35 86 BRCA TCGA-A8-A09M MC3R SNP Missense_Mutation 20 54824566 G A 34 98 BRCA TCGA-A8-A09M BRWD1 SNP Missense_Mutation 21 40569039 C G 29 71 BRCA TCGA-A8-A09M C22orf43 SNP Missense_Mutation 22 23964316 C A 32 53 BRCA TCGA-A8-A09M RFPL1 SNP Missense_Mutation 22 29834893 G A 34 51 BRCA TCGA-A8-A09M MGAT3 SNP Missense_Mutation 22 39883618 C A 27 73 BRCA TCGA-A8-A09M ACO2 SNP Missense_Mutation 22 41865164 G T 34 63 BRCA TCGA-A8-A09M ATP1B4 SNP Missense_Mutation 23 119509272 C A 23 63 BRCA TCGA-A8-A09M HUWE1 SNP Silent 23 53565354 C A 26 57 BRCA TCGA-A8-A09M PJA1 SNP Silent 23 68383061 C T 28 64 BRCA TCGA-A8-A09M SLC35A5 SNP Missense_Mutation 3 112300106 C T 23 57 BRCA TCGA-A8-A09M EPHB1 SNP Silent 3 134670326 G C 42 50 BRCA TCGA-A8-A09M ANKRD28 SNP Missense_Mutation 3 15765918 C G 20 88 BRCA TCGA-A8-A09M TMEM41A SNP Missense_Mutation 3 185209458 G C 36 89 BRCA TCGA-A8-A09M NKTR SNP Missense_Mutation 3 42679861 T A 58 80 BRCA TCGA-A8-A09M SETMAR SNP Missense_Mutation 3 4357984 G A 38 53 BRCA TCGA-A8-A09M IL15 SNP Missense_Mutation 4 142651125 G T 48 48 BRCA TCGA-A8-A09M FBXW7 SNP Missense_Mutation 4 153253831 A G 7 94 BRCA TCGA-A8-A09M FNIP2 SNP Missense_Mutation 4 159756601 G C 33 100 BRCA TCGA-A8-A09M WWC2 SNP Missense_Mutation 4 184204028 G A 33 55 BRCA TCGA-A8-A09M RBM47 DEL Frame_Shift_Del 4 40440303 CT - 28 84 BRCA TCGA-A8-A09M C4orf22 SNP Missense_Mutation 4 81884720 A G 14 73 BRCA TCGA-A8-A09M PCDHA8 SNP Missense_Mutation 5 140223040 G C 44 57 BRCA TCGA-A8-A09M PCDHGA8 SNP Silent 5 140774003 C A 22 43 BRCA TCGA-A8-A09M PCDH12 SNP Missense_Mutation 5 141335925 G A 39 60 BRCA TCGA-A8-A09M ODZ2 SNP Missense_Mutation 5 167489099 T G 59 46 BRCA TCGA-A8-A09M PANK3 SNP Silent 5 167984618 A G 5 53 BRCA TCGA-A8-A09M RMND5B SNP Missense_Mutation 5 177573261 G A 41 97 BRCA TCGA-A8-A09M RUFY1 SNP Missense_Mutation 5 179023616 T G 55 63 BRCA TCGA-A8-A09M NPR3 DEL In_Frame_Del 5 32780845 TCC - 58 93 BRCA TCGA-A8-A09M MAP3K1 INS Frame_Shift_Ins 5 56152573 - T 24 94 BRCA TCGA-A8-A09M EPB41L2 SNP Missense_Mutation 6 131184807 T G 59 70 BRCA TCGA-A8-A09M TIAM2 SNP Missense_Mutation 6 155569172 C T 23 82 BRCA TCGA-A8-A09M NOX3 SNP Missense_Mutation 6 155775952 G T 48 87 BRCA TCGA-A8-A09M SLC17A2 SNP Silent 6 25921430 G T 37 69 BRCA TCGA-A8-A09M SLC17A2 SNP Silent 6 25921485 G A 45 66 BRCA TCGA-A8-A09M ZNF193 SNP Missense_Mutation 6 28195034 C A 28 50 BRCA TCGA-A8-A09M PEX6 SNP Missense_Mutation 6 42932585 G C 33 87 BRCA TCGA-A8-A09M TRAM2 SNP Silent 6 52370468 G A 34 55 BRCA TCGA-A8-A09M KIAA1009 SNP Missense_Mutation 6 84834930 T A 58 54 BRCA TCGA-A8-A09M MUC17 SNP Missense_Mutation 7 100681618 C A 17 47 BRCA TCGA-A8-A09M LAMB4 DEL In_Frame_Del 7 107674765 AGATTTAAT - 3 60 BRCA TCGA-A8-A09M SLC13A1 SNP Missense_Mutation 7 122759261 T A 49 56 BRCA TCGA-A8-A09M BMPER SNP Missense_Mutation 7 34091485 T C 59 86 BRCA TCGA-A8-A09M ABCA13 SNP Missense_Mutation 7 48308653 G T 45 53 BRCA TCGA-A8-A09M ABCA13 SNP Silent 7 48311643 T C 56 50 BRCA TCGA-A8-A09M EFR3A SNP Missense_Mutation 8 132980672 C A 30 95 BRCA TCGA-A8-A09M ZNF7 SNP Missense_Mutation 8 146067735 T G 59 73 BRCA TCGA-A8-A09M WHSC1L1 SNP Missense_Mutation 8 38172281 C G 28 67 BRCA TCGA-A8-A09M EHMT1 SNP Missense_Mutation 9 140637847 C T 28 89 BRCA TCGA-A8-A09M CCDC171 SNP Missense_Mutation 9 15623373 A C 15 75 BRCA TCGA-A8-A09N SH2D2A SNP Silent 1 156784032 G A 45 57 BRCA TCGA-A8-A09N SH2D2A SNP Missense_Mutation 1 156784112 G A 37 60 BRCA TCGA-A8-A09N SPTA1 SNP Missense_Mutation 1 158641868 C A 20 68 BRCA TCGA-A8-A09N SELP SNP Missense_Mutation 1 169581514 G A 39 64 BRCA TCGA-A8-A09N KLHL12 SNP Missense_Mutation 1 202862414 G C 34 57 BRCA TCGA-A8-A09N EPHA8 SNP Missense_Mutation 1 22903295 G A 38 79 BRCA TCGA-A8-A09N AUNIP SNP Missense_Mutation 1 26162139 G A 33 57 BRCA TCGA-A8-A09N CNKSR1 SNP Silent 1 26509860 G A 33 53 BRCA TCGA-A8-A09N KIF2C SNP Missense_Mutation 1 45227643 G C 33 100 BRCA TCGA-A8-A09N PRDX1 INS Frame_Shift_Ins 1 45980571 - A 61 59 BRCA TCGA-A8-A09N KIAA0494 SNP Missense_Mutation 1 47183644 G A 45 97 BRCA TCGA-A8-A09N PODN SNP Missense_Mutation 1 53544159 C T 27 61 BRCA TCGA-A8-A09N ECHS1 SNP Silent 10 135179586 C T 32 50 BRCA TCGA-A8-A09N KIAA1377 SNP Silent 11 101828905 A C 15 66 BRCA TCGA-A8-A09N MMP3 SNP Missense_Mutation 11 102708128 C G 29 93 BRCA TCGA-A8-A09N GRAMD1B SNP Silent 11 123481044 C G 29 65 BRCA TCGA-A8-A09N PRKRIR DEL In_Frame_Del 11 76063702 TTC - 52 46 BRCA TCGA-A8-A09N TRIM53L SNP Silent 11 89578127 G A 45 38 BRCA TCGA-A8-A09N CEP57 SNP Missense_Mutation 11 95552061 C G 25 89 BRCA TCGA-A8-A09N MYBPC1 SNP Missense_Mutation 12 102025811 G C 45 100 BRCA TCGA-A8-A09N HPD SNP Silent 12 122284816 G A 38 17 BRCA TCGA-A8-A09N ALG10B SNP Missense_Mutation 12 38714107 C T 29 89 BRCA TCGA-A8-A09N R3HDM2 SNP Silent 12 57660598 G A 33 60 BRCA TCGA-A8-A09N RBM26 SNP Missense_Mutation 13 79932554 C G 32 72 BRCA TCGA-A8-A09N AHNAK2 SNP Silent 14 105413154 G A 40 41 BRCA TCGA-A8-A09N IGHG3 SNP Silent 14 106237611 C T 27 27 BRCA TCGA-A8-A09N TSHR SNP Missense_Mutation 14 81609330 C A 27 75 BRCA TCGA-A8-A09N LRRK1 SNP Silent 15 101549212 C T 17 66 BRCA TCGA-A8-A09N LOC100130736 SNP Missense_Mutation 15 29906211 G C 33 77 BRCA TCGA-A8-A09N NTRK3 SNP Splice_Site 15 88671941 C A 17 80 BRCA TCGA-A8-A09N TP53 SNP Missense_Mutation 17 7578271 T C 51 76 BRCA TCGA-A8-A09N WRAP53 SNP Silent 17 7606072 C A 30 47 BRCA TCGA-A8-A09N DNAH17 SNP Missense_Mutation 17 76472688 C G 32 58 BRCA TCGA-A8-A09N PDE4C SNP Missense_Mutation 19 18321933 C T 31 49 BRCA TCGA-A8-A09N ZNRF4 SNP Silent 19 5455667 G A 38 46 BRCA TCGA-A8-A09N MUC16 SNP Missense_Mutation 19 9062767 C G 32 52 BRCA TCGA-A8-A09N GTDC1 SNP Silent 2 144764838 A G 16 51 BRCA TCGA-A8-A09N PKP4 SNP Missense_Mutation 2 159481540 G A 37 97 BRCA TCGA-A8-A09N DLGAP4 SNP Missense_Mutation 20 35155390 G A 33 100 BRCA TCGA-A8-A09N DOK5 SNP Missense_Mutation 20 53260054 C T 31 83 BRCA TCGA-A8-A09N ARMCX5 SNP Silent 23 101858440 G A 40 46 BRCA TCGA-A8-A09N RHOXF2 SNP Missense_Mutation 23 119292962 G C 33 47 BRCA TCGA-A8-A09N GAB3 SNP Splice_site 23 153925488 G A 46 59 BRCA TCGA-A8-A09N PGK1 SNP Missense_Mutation 23 77373596 G A 45 94 BRCA TCGA-A8-A09N PCDH11X SNP Missense_Mutation 23 91090834 G C 41 90 BRCA TCGA-A8-A09N BOC SNP Missense_Mutation 3 113004392 G T 47 71 BRCA TCGA-A8-A09N ATP13A4 SNP Splice_site 3 193185105 C T 21 98 BRCA TCGA-A8-A09N SENP5 SNP Missense_Mutation 3 196613257 A C 7 46 BRCA TCGA-A8-A09N KIAA0226 SNP Missense_Mutation 3 197421375 C G 32 75 BRCA TCGA-A8-A09N ARPP21 SNP Missense_Mutation 3 35729359 C G 29 57 BRCA TCGA-A8-A09N SETMAR SNP Missense_Mutation 3 4355372 G C 41 50 BRCA TCGA-A8-A09N UBA3 SNP Missense_Mutation 3 69113243 C G 32 77 BRCA TCGA-A8-A09N CENPE SNP Missense_Mutation 4 104080339 G A 37 50 BRCA TCGA-A8-A09N LRP2BP SNP Silent 4 186291899 G A 45 59 BRCA TCGA-A8-A09N TRIML1 SNP Silent 4 189068190 C T 32 49 BRCA TCGA-A8-A09N MOB1B SNP Silent 4 71844867 C T 29 64 BRCA TCGA-A8-A09N PCDHGB4 SNP Missense_Mutation 5 140769441 G A 37 82 BRCA TCGA-A8-A09N CREBRF SNP Silent 5 172537652 C T 29 63 BRCA TCGA-A8-A09N CDH9 SNP Splice_site 5 26902585 T C 56 68 BRCA TCGA-A8-A09N CDH6 SNP Missense_Mutation 5 31305333 A G 4 90 BRCA TCGA-A8-A09N PRKAA1 SNP Silent 5 40775557 A G 8 72 BRCA TCGA-A8-A09N KIF2A SNP Missense_Mutation 5 61643923 G A 45 97 BRCA TCGA-A8-A09N CDK7 SNP Missense_Mutation 5 68551332 G A 45 99 BRCA TCGA-A8-A09N ENSG00000227087 SNP Missense_Mutation 5 79627880 C G 32 69 BRCA TCGA-A8-A09N PRDM1 SNP Missense_Mutation 6 106553664 C A 27 40 BRCA TCGA-A8-A09N LGSN SNP Silent 6 63990178 G A 39 31 BRCA TCGA-A8-A09N CUX1 SNP Silent 7 101844815 G A 48 41 BRCA TCGA-A8-A09N MGAM SNP Silent 7 141763364 G A 45 54 BRCA TCGA-A8-A09N WDR60 SNP Silent 7 158672659 G A 34 51 BRCA TCGA-A8-A09N NPC1L1 SNP Silent 7 44579387 G C 45 58 BRCA TCGA-A8-A09N ANGPT1 SNP Missense_Mutation 8 108359214 G C 45 100 BRCA TCGA-A8-A09N KCNB2 SNP Missense_Mutation 8 73848476 G A 40 100 BRCA TCGA-A8-A09N ZFHX4 SNP Silent 8 77745629 G A 45 63 BRCA TCGA-A8-A09N DCAF4L2 SNP Missense_Mutation 8 88885242 C T 19 46 BRCA TCGA-A8-A09N PTBP3 SNP Missense_Mutation 9 115030409 G C 41 84 BRCA TCGA-A8-A09N NUP188 SNP Missense_Mutation 9 131721088 A C 12 75 BRCA TCGA-A8-A09N SETX SNP Missense_Mutation 9 135156918 T C 51 78 BRCA TCGA-A8-A09Q OVGP1 SNP Missense_Mutation 1 111957196 C A 17 49 BRCA TCGA-A8-A09Q RSBN1 SNP Silent 1 114308631 G A 33 87 BRCA TCGA-A8-A09Q ANKRD35 SNP Missense_Mutation 1 145558839 G T 41 76 BRCA TCGA-A8-A09Q PIP5K1A SNP Silent 1 151215029 A G 1 49 BRCA TCGA-A8-A09Q POGZ SNP Nonsense_Mutation 1 151377393 G T 45 67 BRCA TCGA-A8-A09Q LCE1A SNP Silent 1 152800092 C T 23 43 BRCA TCGA-A8-A09Q INSRR SNP Missense_Mutation 1 156821130 C G 26 74 BRCA TCGA-A8-A09Q IGSF9 SNP Missense_Mutation 1 159904310 A G 7 49 BRCA TCGA-A8-A09Q ADAMTS4 SNP Silent 1 161168097 C T 29 59 BRCA TCGA-A8-A09Q CFH SNP Missense_Mutation 1 196706080 A T 9 42 BRCA TCGA-A8-A09Q DYRK3 SNP Silent 1 206821149 A G 11 53 BRCA TCGA-A8-A09Q HHAT SNP Missense_Mutation 1 210796928 C T 30 88 BRCA TCGA-A8-A09Q PCNXL2 SNP Missense_Mutation 1 233120153 T C 54 60 BRCA TCGA-A8-A09Q OR11L1 SNP Missense_Mutation 1 248005132 A G 8 57 BRCA TCGA-A8-A09Q HECTD3 SNP Missense_Mutation 1 45472650 A C 4 89 BRCA TCGA-A8-A09Q SPATA6 SNP Missense_Mutation 1 48764474 G T 44 62 BRCA TCGA-A8-A09Q C1orf168 SNP Silent 1 57258333 A G 8 55 BRCA TCGA-A8-A09Q TAS1R1 SNP Missense_Mutation 1 6634970 A G 8 55 BRCA TCGA-A8-A09Q CTH SNP Nonsense_Mutation 1 70895527 C G 17 56 BRCA TCGA-A8-A09Q C1orf173 SNP Silent 1 75038229 A G 4 42 BRCA TCGA-A8-A09Q MSH4 SNP Nonsense_Mutation 1 76269499 C T 19 55 BRCA TCGA-A8-A09Q ZZZ3 SNP Missense_Mutation 1 78031328 T A 50 89 BRCA TCGA-A8-A09Q ZNF644 SNP Missense_Mutation 1 91406699 G A 40 75 BRCA TCGA-A8-A09Q LOXL4 SNP Silent 10 100017455 A G 8 49 BRCA TCGA-A8-A09Q EBF3 SNP Missense_Mutation 10 131671832 T C 58 90 BRCA TCGA-A8-A09Q CTNNA3 SNP Missense_Mutation 10 68139014 C T 23 98 BRCA TCGA-A8-A09Q OPN4 SNP Silent 10 88419766 C T 31 53 BRCA TCGA-A8-A09Q MARCH5 SNP Missense_Mutation 10 94109244 C T 27 83 BRCA TCGA-A8-A09Q PDGFD SNP Missense_Mutation 11 103814288 C T 32 86 BRCA TCGA-A8-A09Q OR8B12 SNP Missense_Mutation 11 124413190 G A 39 80 BRCA TCGA-A8-A09Q NELL1 SNP Missense_Mutation 11 20699519 G A 40 55 BRCA TCGA-A8-A09Q TRIM51 SNP Missense_Mutation 11 55658869 G A 33 30 BRCA TCGA-A8-A09Q NRXN2 SNP Silent 11 64419616 G A 39 34 BRCA TCGA-A8-A09Q DPP3 SNP Missense_Mutation 11 66276589 C A 28 82 BRCA TCGA-A8-A09Q FAT3 SNP Missense_Mutation 11 92534068 G C 41 89 BRCA TCGA-A8-A09Q CCDC67 SNP Missense_Mutation 11 93104384 A C 13 66 BRCA TCGA-A8-A09Q AMOTL1 SNP Missense_Mutation 11 94599220 G A 38 81 BRCA TCGA-A8-A09Q SBF2 SNP Nonsense_Mutation 11 9875162 G A 39 69 BRCA TCGA-A8-A09Q BHLHE41 SNP Missense_Mutation 12 26276608 C T 27 79 BRCA TCGA-A8-A09Q KCNA1 SNP Missense_Mutation 12 5021107 C T 19 97 BRCA TCGA-A8-A09Q KRT85 SNP Silent 12 52760887 G A 40 54 BRCA TCGA-A8-A09Q ITGBL1 SNP Silent 13 102250606 C A 29 66 BRCA TCGA-A8-A09Q FAM124A SNP Missense_Mutation 13 51826286 C A 27 43 BRCA TCGA-A8-A09Q OR11H12 SNP Silent 14 19377728 C A 32 60 BRCA TCGA-A8-A09Q KTN1 SNP Missense_Mutation 14 56114796 G A 41 86 BRCA TCGA-A8-A09Q PELI2 SNP Missense_Mutation 14 56763595 G A 39 87 BRCA TCGA-A8-A09Q SMURF2 SNP Missense_Mutation 17 62568001 C G 24 100 BRCA TCGA-A8-A09Q SMURF2 SNP Missense_Mutation 17 62568066 C G 28 77 BRCA TCGA-A8-A09Q TTYH2 SNP Missense_Mutation 17 72249264 C A 22 90 BRCA TCGA-A8-A09Q TP53 SNP Splice_Site 17 7578175 A T 10 87 BRCA TCGA-A8-A09Q GAA SNP Missense_Mutation 17 78090815 G C 43 95 BRCA TCGA-A8-A09Q MYH10 SNP Missense_Mutation 17 8417136 G A 40 82 BRCA TCGA-A8-A09Q CCDC102B SNP Missense_Mutation 18 66505946 C A 17 50 BRCA TCGA-A8-A09Q ZNF799 SNP Nonstop_Mutation 19 12491156 C G 29 62 BRCA TCGA-A8-A09Q ZNF555 SNP Missense_Mutation 19 2851535 A C 3 53 BRCA TCGA-A8-A09Q MEGF8 SNP Missense_Mutation 19 42847688 G A 40 87 BRCA TCGA-A8-A09Q CD37 SNP Missense_Mutation 19 49838991 C A 32 63 BRCA TCGA-A8-A09Q SCN9A SNP Missense_Mutation 2 167136917 G A 48 100 BRCA TCGA-A8-A09Q XIRP2 SNP Missense_Mutation 2 168074694 A G 4 52 BRCA TCGA-A8-A09Q TTN SNP Missense_Mutation 2 179481483 A T 9 80 BRCA TCGA-A8-A09Q TTN SNP Missense_Mutation 2 179615171 G A 40 59 BRCA TCGA-A8-A09Q APOB SNP Missense_Mutation 2 21225768 C T 18 35 BRCA TCGA-A8-A09Q COL4A3 SNP Missense_Mutation 2 228121089 T A 60 58 BRCA TCGA-A8-A09Q UGT1A6 SNP Missense_Mutation 2 234601870 A G 6 69 BRCA TCGA-A8-A09Q TRPM8 SNP Missense_Mutation 2 234835246 C T 23 63 BRCA TCGA-A8-A09Q THADA SNP Nonsense_Mutation 2 43813847 T A 61 42 BRCA TCGA-A8-A09Q MSH2 SNP Missense_Mutation 2 47672761 C G 29 88 BRCA TCGA-A8-A09Q STON1-GTF2A1L SNP Missense_Mutation 2 48807847 G T 33 69 BRCA TCGA-A8-A09Q STAMBP SNP Missense_Mutation 2 74058086 C T 31 55 BRCA TCGA-A8-A09Q ASXL1 SNP Missense_Mutation 20 31022346 G A 38 55 BRCA TCGA-A8-A09Q PTPRT SNP Missense_Mutation 20 40757458 C T 23 81 BRCA TCGA-A8-A09Q PI3 SNP Silent 20 43804746 T C 56 50 BRCA TCGA-A8-A09Q ARHGAP6 SNP Silent 23 11196301 G A 38 48 BRCA TCGA-A8-A09Q IL13RA2 SNP Missense_Mutation 23 114250277 C G 30 61 BRCA TCGA-A8-A09Q TLR7 SNP Missense_Mutation 23 12904335 G A 45 50 BRCA TCGA-A8-A09Q AFF2 SNP Missense_Mutation 23 148055076 C T 19 66 BRCA TCGA-A8-A09Q WAS SNP Missense_Mutation 23 48542728 C G 20 61 BRCA TCGA-A8-A09Q DACH2 SNP Silent 23 85769372 G A 38 47 BRCA TCGA-A8-A09Q CBLB SNP Missense_Mutation 3 105421144 C T 32 90 BRCA TCGA-A8-A09Q EAF2 SNP Missense_Mutation 3 121573546 C G 18 95 BRCA TCGA-A8-A09Q MYLK SNP Silent 3 123456283 C T 19 1 BRCA TCGA-A8-A09Q DNAJC13 SNP Missense_Mutation 3 132218599 C T 31 97 BRCA TCGA-A8-A09Q ZIC1 SNP Silent 3 147131206 C T 21 56 BRCA TCGA-A8-A09Q PIK3CA SNP Silent 3 178941946 A G 13 47 BRCA TCGA-A8-A09Q HTR3E SNP Missense_Mutation 3 183823994 T G 59 65 BRCA TCGA-A8-A09Q MAD2L1 SNP Missense_Mutation 4 120983241 T A 57 67 BRCA TCGA-A8-A09Q TBC1D9 SNP Missense_Mutation 4 141543579 G A 38 75 BRCA TCGA-A8-A09Q WDR17 SNP Missense_Mutation 4 177071027 G C 47 99 BRCA TCGA-A8-A09Q BEND4 SNP Missense_Mutation 4 42145757 C T 18 81 BRCA TCGA-A8-A09Q GABRB1 SNP Missense_Mutation 4 47427898 C T 23 76 BRCA TCGA-A8-A09Q SLC4A4 SNP Missense_Mutation 4 72205191 G T 47 100 BRCA TCGA-A8-A09Q TSSK1B SNP Missense_Mutation 5 112769486 T C 49 47 BRCA TCGA-A8-A09Q TGFBI SNP Missense_Mutation 5 135391372 C T 24 76 BRCA TCGA-A8-A09Q PDGFRB SNP Missense_Mutation 5 149513452 G A 39 63 BRCA TCGA-A8-A09Q NUDCD2 SNP Missense_Mutation 5 162881017 T A 64 91 BRCA TCGA-A8-A09Q CDH12 SNP Missense_Mutation 5 21751992 C T 19 61 BRCA TCGA-A8-A09Q SLC45A2 SNP Missense_Mutation 5 33984503 G C 38 54 BRCA TCGA-A8-A09Q KIAA0947 SNP Missense_Mutation 5 5462931 A C 3 60 BRCA TCGA-A8-A09Q KIF2A SNP Silent 5 61658362 T C 59 71 BRCA TCGA-A8-A09Q THBS4 SNP Missense_Mutation 5 79357584 G A 38 50 BRCA TCGA-A8-A09Q GPR98 SNP Silent 5 90106086 C T 27 54 BRCA TCGA-A8-A09Q GRIK2 SNP Nonsense_Mutation 6 102337557 C T 31 68 BRCA TCGA-A8-A09Q NEDD9 SNP Silent 6 11191331 C T 23 19 BRCA TCGA-A8-A09Q T SNP Missense_Mutation 6 166580202 G T 42 96 BRCA TCGA-A8-A09Q KIF25 SNP Silent 6 168440805 G A 37 47 BRCA TCGA-A8-A09Q HIST1H2AE SNP Missense_Mutation 6 26217305 C T 24 70 BRCA TCGA-A8-A09Q AARS2 SNP Missense_Mutation 6 44274674 C G 20 84 BRCA TCGA-A8-A09Q MUC17 SNP Silent 7 100678735 C G 21 36 BRCA TCGA-A8-A09Q FSCN3 SNP Missense_Mutation 7 127238597 T C 56 74 BRCA TCGA-A8-A09Q SLC13A4 SNP Missense_Mutation 7 135380224 G T 42 52 BRCA TCGA-A8-A09Q CHST12 SNP Silent 7 2473288 C T 31 48 BRCA TCGA-A8-A09Q TRPS1 SNP Missense_Mutation 8 116632015 G A 43 62 BRCA TCGA-A8-A09Q SLC18A1 SNP Silent 8 20008221 G T 45 50 BRCA TCGA-A8-A09Q SLC18A1 SNP Missense_Mutation 8 20022582 C G 32 96 BRCA TCGA-A8-A09Q SORBS3 SNP Silent 8 22428563 C T 26 53 BRCA TCGA-A8-A09Q CSMD1 SNP Missense_Mutation 8 3855553 G T 48 66 BRCA TCGA-A8-A09Q SDR16C5 SNP Nonsense_Mutation 8 57214113 C A 24 55 BRCA TCGA-A8-A09Q PRDM14 SNP Silent 8 70981496 C T 24 50 BRCA TCGA-A8-A09Q CCDC107 SNP Silent 9 35660406 T C 51 51 BRCA TCGA-A8-A09Q TLN1 SNP Missense_Mutation 9 35722177 A G 10 93 BRCA TCGA-A8-A09Q PCSK5 SNP Splice_Site 9 78789900 A G 3 90 BRCA TCGA-A8-A09Q PTPRD SNP Missense_Mutation 9 8471045 C T 23 96 BRCA TCGA-A8-A09Q PTCH1 SNP Missense_Mutation 9 98231318 C A 32 53 BRCA TCGA-A8-A09Q PTCH1 SNP Silent 9 98231321 C G 27 42 BRCA TCGA-A8-A09R DARC SNP Missense_Mutation 1 159175674 T A 59 51 BRCA TCGA-A8-A09R IARS2 SNP Missense_Mutation 1 220307827 G T 42 95 BRCA TCGA-A8-A09R AIM1L SNP Missense_Mutation 1 26664147 G T 43 60 BRCA TCGA-A8-A09R ZNF644 DEL In_Frame_Del 1 91403092 TCC - 50 81 BRCA TCGA-A8-A09R TGFBR3 SNP Missense_Mutation 1 92177900 C T 28 86 BRCA TCGA-A8-A09R GATA3 INS Frame_Shift_Ins 10 8115874 - G 31 85 BRCA TCGA-A8-A09R HSPA8 DEL In_Frame_Del 11 122928986 TTTCAT - 52 78 BRCA TCGA-A8-A09R TRIM68 SNP Missense_Mutation 11 4621685 C T 19 53 BRCA TCGA-A8-A09R GLYAT SNP Missense_Mutation 11 58477428 C A 25 56 BRCA TCGA-A8-A09R TBX3 SNP Nonsense_Mutation 12 115118832 C T 21 100 BRCA TCGA-A8-A09R CIT SNP Missense_Mutation 12 120156521 C T 23 88 BRCA TCGA-A8-A09R PPFIA2 SNP Missense_Mutation 12 81851615 C A 25 84 BRCA TCGA-A8-A09R COL4A1 SNP Silent 13 110839539 C T 23 46 BRCA TCGA-A8-A09R AP1G2 SNP Missense_Mutation 14 24030809 C T 31 51 BRCA TCGA-A8-A09R SYNE2 DEL Frame_Shift_Del 14 64516385 AG - 7 31 BRCA TCGA-A8-A09R SIPA1L1 SNP Silent 14 72171448 T C 49 62 BRCA TCGA-A8-A09R RYR3 SNP Splice_Site 15 34115275 T G 57 91 BRCA TCGA-A8-A09R TGM7 SNP Missense_Mutation 15 43571436 C T 32 52 BRCA TCGA-A8-A09R ACAN SNP Missense_Mutation 15 89401208 C A 25 59 BRCA TCGA-A8-A09R MYH11 SNP Missense_Mutation 16 15797924 A G 4 74 BRCA TCGA-A8-A09R SMG1 SNP Splice_site 16 18847853 A G 14 94 BRCA TCGA-A8-A09R ZFHX3 SNP Silent 16 72830233 C T 27 46 BRCA TCGA-A8-A09R OR4D2 SNP Missense_Mutation 17 56247170 G T 45 70 BRCA TCGA-A8-A09R KCNJ2 SNP Missense_Mutation 17 68172397 T C 49 71 BRCA TCGA-A8-A09R RYR1 SNP Silent 19 38976764 G A 42 48 BRCA TCGA-A8-A09R SP100 SNP Missense_Mutation 2 231379957 G C 33 76 BRCA TCGA-A8-A09R SMYD1 DEL In_Frame_Del 2 88396144 AGA - 7 45 BRCA TCGA-A8-A09R ASXL1 SNP Silent 20 31022345 C T 27 32 BRCA TCGA-A8-A09R RPRD1B SNP Missense_Mutation 20 36662443 C T 21 98 BRCA TCGA-A8-A09R STAU1 SNP Missense_Mutation 20 47734496 C T 28 85 BRCA TCGA-A8-A09R NFATC2 SNP Silent 20 50140351 G A 39 49 BRCA TCGA-A8-A09R PLCB1 SNP Nonsense_Mutation 20 8737739 C T 19 71 BRCA TCGA-A8-A09R POTEH DEL In_Frame_Del 22 16277750 ATT - 8 56 BRCA TCGA-A8-A09R PGAM4 SNP Missense_Mutation 23 77224588 A C 4 71 BRCA TCGA-A8-A09R MAD2L1 SNP Missense_Mutation 4 120981377 G T 44 96 BRCA TCGA-A8-A09R TCF7 SNP Missense_Mutation 5 133477961 G T 35 98 BRCA TCGA-A8-A09R SGCD SNP Missense_Mutation 5 156186373 G T 48 96 BRCA TCGA-A8-A09R FGFR4 SNP Silent 5 176519392 C T 19 42 BRCA TCGA-A8-A09R MAN1A1 SNP Silent 6 119569483 A G 4 68 BRCA TCGA-A8-A09R BTN3A3 SNP Silent 6 26452000 A G 7 36 BRCA TCGA-A8-A09R SERPINB1 SNP Missense_Mutation 6 2833961 C T 27 70 BRCA TCGA-A8-A09R SND1 SNP Missense_Mutation 7 127326706 C T 31 98 BRCA TCGA-A8-A09R NUB1 SNP Missense_Mutation 7 151064964 G C 33 64 BRCA TCGA-A8-A09R ATP6V1B2 DEL In_Frame_Del 8 20077864 CTCAGAGCA - 24 95 BRCA TCGA-A8-A09R TEX15 SNP Missense_Mutation 8 30705950 C G 20 45 BRCA TCGA-A8-A09R JPH1 SNP Missense_Mutation 8 75227343 G A 38 68 BRCA TCGA-A8-A09R CNTLN SNP Missense_Mutation 9 17332708 G C 33 68 BRCA TCGA-A8-A09R RUSC2 SNP Missense_Mutation 9 35546754 G T 39 64 BRCA TCGA-A8-A09T HRNR SNP Nonsense_Mutation 1 152191578 G A 40 44 BRCA TCGA-A8-A09T PTPN14 SNP Missense_Mutation 1 214557496 G A 42 100 BRCA TCGA-A8-A09T TTC4 SNP Missense_Mutation 1 55194092 T C 54 72 BRCA TCGA-A8-A09T RAB30 SNP Silent 11 82698729 G A 45 52 BRCA TCGA-A8-A09T COL4A2 SNP Missense_Mutation 13 111156284 G A 37 52 BRCA TCGA-A8-A09T MAGEL2 SNP Missense_Mutation 15 23890251 C T 27 50 BRCA TCGA-A8-A09T RYR3 SNP Silent 15 33795930 C T 27 61 BRCA TCGA-A8-A09T CSNK2A2 SNP Missense_Mutation 16 58200581 C G 27 100 BRCA TCGA-A8-A09T ATAD5 SNP Missense_Mutation 17 29221047 A G 1 62 BRCA TCGA-A8-A09T PREPL SNP Nonsense_Mutation 2 44556197 G A 46 57 BRCA TCGA-A8-A09T RETSAT SNP Missense_Mutation 2 85571455 A T 11 53 BRCA TCGA-A8-A09T GNAS SNP Missense_Mutation 20 57484420 C T 23 70 BRCA TCGA-A8-A09T MAGEC1 SNP Missense_Mutation 23 140994265 G A 45 53 BRCA TCGA-A8-A09T PLCXD2 SNP Missense_Mutation 3 111432878 C T 19 56 BRCA TCGA-A8-A09T COL7A1 SNP Missense_Mutation 3 48612280 C A 24 69 BRCA TCGA-A8-A09T VGLL3 SNP Missense_Mutation 3 87018135 G A 46 72 BRCA TCGA-A8-A09T TMPRSS11B DEL Splice_Site 4 69101719 C - 17 60 BRCA TCGA-A8-A09T ANKRD34B SNP Missense_Mutation 5 79855031 C A 30 67 BRCA TCGA-A8-A09T KIAA1009 SNP Silent 6 84922694 C T 31 41 BRCA TCGA-A8-A09T KIAA1429 SNP Missense_Mutation 8 95508070 A G 2 67 BRCA TCGA-A8-A09T SVEP1 SNP Missense_Mutation 9 113189893 C T 19 70 BRCA TCGA-A8-A09T TRPM3 SNP Missense_Mutation 9 73442886 C A 17 78 BRCA TCGA-A8-A09V OR10J1 SNP Missense_Mutation 1 159410003 G A 40 68 BRCA TCGA-A8-A09V PADI3 SNP Silent 1 17575713 G A 47 59 BRCA TCGA-A8-A09V CR1 SNP Missense_Mutation 1 207793390 C G 24 57 BRCA TCGA-A8-A09V PRDM16 SNP Missense_Mutation 1 3347638 G A 38 45 BRCA TCGA-A8-A09V BARHL2 SNP Silent 1 91182534 C T 23 54 BRCA TCGA-A8-A09V SFXN2 SNP Splice_site 10 104489151 G A 35 100 BRCA TCGA-A8-A09V MUC2 SNP Silent 11 1092321 C T 19 45 BRCA TCGA-A8-A09V SNRNP35 SNP Missense_Mutation 12 123950441 C A 18 54 BRCA TCGA-A8-A09V RNASE2 SNP Silent 14 21424383 G A 39 36 BRCA TCGA-A8-A09V SNAP23 DEL Frame_Shift_Del 15 42820532 TG - 51 49 BRCA TCGA-A8-A09V CDH1 INS In_Frame_Ins 16 68842438 - CCC 45 56 BRCA TCGA-A8-A09V RYR1 SNP Silent 19 38976254 G A 39 33 BRCA TCGA-A8-A09V NPAS1 SNP Missense_Mutation 19 47543707 G C 34 68 BRCA TCGA-A8-A09V MUC16 SNP Splice_site 19 9018133 C A 24 61 BRCA TCGA-A8-A09V FARSB SNP Missense_Mutation 2 223436667 G C 45 97 BRCA TCGA-A8-A09V CXorf65 SNP Missense_Mutation 23 70323923 G T 37 68 BRCA TCGA-A8-A09V COMMD2 DEL In_Frame_Del 3 149470040 GAA - 41 54 BRCA TCGA-A8-A09V OPA1 DEL In_Frame_Del 3 193353241 AGG - 3 92 BRCA TCGA-A8-A09V PFDN6 SNP Missense_Mutation 6 33258127 A G 5 81 BRCA TCGA-A8-A09V SPACA1 DEL Frame_Shift_Del 6 88769287 CA - 29 57 BRCA TCGA-A8-A09V CUX1 SNP Silent 7 101838792 G A 39 46 BRCA TCGA-A8-A09W HMCN1 SNP Missense_Mutation 1 186014957 C G 18 75 BRCA TCGA-A8-A09W UBR4 SNP Missense_Mutation 1 19419810 T A 56 89 BRCA TCGA-A8-A09W DENND1B SNP Missense_Mutation 1 197479779 A T 12 53 BRCA TCGA-A8-A09W SYT2 SNP Missense_Mutation 1 202571070 A T 11 91 BRCA TCGA-A8-A09W DSTYK SNP Missense_Mutation 1 205116809 C G 22 99 BRCA TCGA-A8-A09W USH2A SNP Missense_Mutation 1 215844496 G C 42 62 BRCA TCGA-A8-A09W RYR2 SNP Silent 1 237791276 C T 23 19 BRCA TCGA-A8-A09W CYP4B1 SNP Missense_Mutation 1 47279655 A C 14 63 BRCA TCGA-A8-A09W CRTAC1 SNP Missense_Mutation 10 99696026 G A 38 64 BRCA TCGA-A8-A09W SIK3 SNP Missense_Mutation 11 116730122 C A 26 50 BRCA TCGA-A8-A09W RIC8A DEL Splice_Site 11 213293 AAACAGCAT - 9 58 BRCA TCGA-A8-A09W OR5A2 SNP Missense_Mutation 11 59190301 C G 30 62 BRCA TCGA-A8-A09W BRMS1 SNP Missense_Mutation 11 66107594 G C 33 85 BRCA TCGA-A8-A09W STK33 SNP Missense_Mutation 11 8457117 A G 2 52 BRCA TCGA-A8-A09W FAT3 DEL Frame_Shift_Del 11 92531848 CTAT - 20 100 BRCA TCGA-A8-A09W POLE SNP Missense_Mutation 12 133226423 A G 8 88 BRCA TCGA-A8-A09W TMTC1 SNP Missense_Mutation 12 29709922 C T 27 57 BRCA TCGA-A8-A09W RHNO1 SNP Missense_Mutation 12 2994559 G T 34 26 BRCA TCGA-A8-A09W CD163L1 SNP Missense_Mutation 12 7559293 C T 27 67 BRCA TCGA-A8-A09W PCID2 SNP Missense_Mutation 13 113851457 T C 53 41 BRCA TCGA-A8-A09W RB1 SNP Nonsense_Mutation 13 49030343 T G 50 81 BRCA TCGA-A8-A09W MYH7 SNP Missense_Mutation 14 23885466 T G 55 90 BRCA TCGA-A8-A09W HECTD1 SNP Missense_Mutation 14 31605846 C T 23 99 BRCA TCGA-A8-A09W ATP8B4 SNP Missense_Mutation 15 50273432 C G 29 97 BRCA TCGA-A8-A09W FURIN SNP Missense_Mutation 15 91420216 G C 47 97 BRCA TCGA-A8-A09W CRYM SNP Missense_Mutation 16 21288757 G T 34 61 BRCA TCGA-A8-A09W RBBP6 SNP Missense_Mutation 16 24582883 A G 10 72 BRCA TCGA-A8-A09W CBFB SNP Nonsense_Mutation 16 67070595 G A 42 62 BRCA TCGA-A8-A09W CDH1 SNP Splice_Site 16 68856129 G A 36 95 BRCA TCGA-A8-A09W VAT1L SNP Silent 16 77859253 T G 55 46 BRCA TCGA-A8-A09W FOXN1 SNP Silent 17 26861801 G A 48 58 BRCA TCGA-A8-A09W EFCAB5 SNP Silent 17 28380487 G T 38 55 BRCA TCGA-A8-A09W KRT9 SNP Silent 17 39728035 G T 34 38 BRCA TCGA-A8-A09W SP6 SNP Silent 17 45924911 G A 45 81 BRCA TCGA-A8-A09W CLTC SNP Silent 17 57746199 A G 4 54 BRCA TCGA-A8-A09W FN3KRP SNP Missense_Mutation 17 80684731 G A 40 47 BRCA TCGA-A8-A09W L3MBTL4 SNP Missense_Mutation 18 6093468 C T 19 52 BRCA TCGA-A8-A09W GALR1 SNP Missense_Mutation 18 74962829 A G 5 87 BRCA TCGA-A8-A09W KEAP1 INS Frame_Shift_Ins 19 10600498 - T 18 98 BRCA TCGA-A8-A09W KEAP1 DEL Frame_Shift_Del 19 10600502 G - 36 58 BRCA TCGA-A8-A09W SLC27A1 SNP Silent 19 17597396 G A 46 48 BRCA TCGA-A8-A09W UNC13A SNP Splice_Site 19 17741462 C G 18 89 BRCA TCGA-A8-A09W FCGBP SNP Silent 19 40367763 A G 7 34 BRCA TCGA-A8-A09W SHC2 SNP Missense_Mutation 19 434769 G A 38 51 BRCA TCGA-A8-A09W SYMPK SNP Missense_Mutation 19 46332318 G T 42 59 BRCA TCGA-A8-A09W CLEC11A SNP Missense_Mutation 19 51226792 G A 34 67 BRCA TCGA-A8-A09W SNTG2 SNP Missense_Mutation 2 1251147 T G 54 49 BRCA TCGA-A8-A09W TNFAIP6 SNP Missense_Mutation 2 152214261 C A 20 71 BRCA TCGA-A8-A09W TTN SNP Missense_Mutation 2 179584289 T C 51 63 BRCA TCGA-A8-A09W TNS1 SNP Missense_Mutation 2 218713217 T C 51 48 BRCA TCGA-A8-A09W PLEKHH2 SNP Missense_Mutation 2 43927079 G A 34 84 BRCA TCGA-A8-A09W TMEM131 SNP Missense_Mutation 2 98409376 G C 43 87 BRCA TCGA-A8-A09W RBM12 SNP Missense_Mutation 20 34240663 T A 63 76 BRCA TCGA-A8-A09W NFATC2 SNP Silent 20 50139844 C T 23 40 BRCA TCGA-A8-A09W MUM1L1 DEL Frame_Shift_Del 23 105449486 TCCAGAT - 58 56 BRCA TCGA-A8-A09W LRCH2 SNP Splice_Site 23 114400906 C A 20 91 BRCA TCGA-A8-A09W DCAF12L1 SNP Silent 23 125685656 C G 29 54 BRCA TCGA-A8-A09W GPR112 DEL Frame_Shift_Del 23 135404976 GAAGAGGT - 41 61 BRCA TCGA-A8-A09W FMR1NB SNP Nonsense_Mutation 23 147084783 C T 21 50 BRCA TCGA-A8-A09W PIR SNP Missense_Mutation 23 15474117 G C 47 71 BRCA TCGA-A8-A09W DDX53 SNP Missense_Mutation 23 23019754 T G 57 67 BRCA TCGA-A8-A09W FAM47C SNP Missense_Mutation 23 37028375 G A 38 45 BRCA TCGA-A8-A09W WDR13 SNP Silent 23 48457210 G A 38 40 BRCA TCGA-A8-A09W PAGE1 SNP Silent 23 49454040 C T 24 45 BRCA TCGA-A8-A09W FAM155B SNP Missense_Mutation 23 68725857 C G 25 67 BRCA TCGA-A8-A09W DGAT2L6 SNP Silent 23 69397492 A G 4 38 BRCA TCGA-A8-A09W ZCCHC5 SNP Missense_Mutation 23 77913268 T A 54 55 BRCA TCGA-A8-A09W BRWD3 SNP Missense_Mutation 23 79990631 C T 20 94 BRCA TCGA-A8-A09W PCDH11X SNP Missense_Mutation 23 91873468 G T 33 58 BRCA TCGA-A8-A09W ABI3BP DEL In_Frame_Del 3 100595385 TTCCTTGGGACA - 64 59 BRCA TCGA-A8-A09W GUCA1C SNP Missense_Mutation 3 108639378 C G 32 78 BRCA TCGA-A8-A09W GFM1 SNP Missense_Mutation 3 158370027 G T 45 95 BRCA TCGA-A8-A09W CHL1 SNP Silent 3 370003 C T 31 42 BRCA TCGA-A8-A09W ITPR1 SNP Missense_Mutation 3 4730242 G A 38 86 BRCA TCGA-A8-A09W WNT5A SNP Silent 3 55513565 C T 32 88 BRCA TCGA-A8-A09W SH3TC2 SNP Missense_Mutation 5 148427522 C T 27 67 BRCA TCGA-A8-A09W OPRM1 DEL Frame_Shift_Del 6 154360648 CGCACAG - 31 60 BRCA TCGA-A8-A09W ARID1B SNP Splice_site 6 157505569 G T 47 100 BRCA TCGA-A8-A09W KIF13A SNP Nonsense_Mutation 6 17781438 G C 44 63 BRCA TCGA-A8-A09W KLC4 SNP Missense_Mutation 6 43038519 A T 2 48 BRCA TCGA-A8-A09W DST SNP Missense_Mutation 6 56330983 G T 41 100 BRCA TCGA-A8-A09W UBE3C SNP Missense_Mutation 7 157041140 G A 40 100 BRCA TCGA-A8-A09W ADCYAP1R1 DEL Frame_Shift_Del 7 31142941 GGAAAGA - 43 66 BRCA TCGA-A8-A09W ADCYAP1R1 DEL Frame_Shift_Del 7 31142951 GTGTTTGAGCTGGGGCTGGG - 40 94 BRCA TCGA-A8-A09W ADCYAP1R1 INS Frame_Shift_Ins 7 31142972 - AA 54 86 BRCA TCGA-A8-A09W HECW1 SNP Missense_Mutation 7 43591930 G A 39 100 BRCA TCGA-A8-A09W IDO2 SNP Missense_Mutation 8 39872802 C A 24 81 BRCA TCGA-A8-A09W TNFSF8 SNP Splice_site 9 117692389 C G 23 80 BRCA TCGA-A8-A09X SCNM1 SNP Missense_Mutation 1 151138644 G A 41 90 BRCA TCGA-A8-A09X C1orf114 SNP Missense_Mutation 1 169391389 G A 41 69 BRCA TCGA-A8-A09X CSRP1 SNP Missense_Mutation 1 201465427 G C 39 86 BRCA TCGA-A8-A09X FGFR2 SNP Missense_Mutation 10 123256149 G C 41 100 BRCA TCGA-A8-A09X PLCE1 SNP Silent 10 96018635 C T 25 50 BRCA TCGA-A8-A09X KIF18A SNP Missense_Mutation 11 28119324 C A 32 55 BRCA TCGA-A8-A09X PPP2R5B SNP Missense_Mutation 11 64695334 G C 33 90 BRCA TCGA-A8-A09X RAB30 SNP Silent 11 82693237 G A 45 89 BRCA TCGA-A8-A09X CIT SNP Missense_Mutation 12 120189920 G A 37 87 BRCA TCGA-A8-A09X EP400 SNP Missense_Mutation 12 132522231 G C 48 96 BRCA TCGA-A8-A09X NOP2 SNP Missense_Mutation 12 6672822 C T 29 62 BRCA TCGA-A8-A09X OR4K1 SNP Silent 14 20404131 C T 31 47 BRCA TCGA-A8-A09X PRMT5 SNP Missense_Mutation 14 23395473 G A 45 66 BRCA TCGA-A8-A09X SCFD1 SNP Missense_Mutation 14 31144222 T G 56 84 BRCA TCGA-A8-A09X PNN SNP Splice_site 14 39648666 G A 39 96 BRCA TCGA-A8-A09X GCH1 SNP Silent 14 55310747 G A 45 57 BRCA TCGA-A8-A09X VPS18 SNP Missense_Mutation 15 41191587 C T 23 73 BRCA TCGA-A8-A09X CDH1 DEL Frame_Shift_Del 16 68845625 G - 37 95 BRCA TCGA-A8-A09X CACNA1G SNP Silent 17 48674212 G A 47 57 BRCA TCGA-A8-A09X RGS9 SNP Missense_Mutation 17 63185416 G A 40 42 BRCA TCGA-A8-A09X TMEM104 SNP Silent 17 72786401 C T 19 50 BRCA TCGA-A8-A09X TP53 SNP Missense_Mutation 17 7577543 C T 29 94 BRCA TCGA-A8-A09X ZNF532 SNP Silent 18 56586482 C T 31 45 BRCA TCGA-A8-A09X OR10H1 SNP Missense_Mutation 19 15918448 C T 19 60 BRCA TCGA-A8-A09X HAPLN4 SNP Missense_Mutation 19 19369354 G T 33 62 BRCA TCGA-A8-A09X LILRB2 SNP Missense_Mutation 19 54783676 G T 34 44 BRCA TCGA-A8-A09X ZNF266 SNP Missense_Mutation 19 9524313 G A 45 86 BRCA TCGA-A8-A09X MAP4K4 SNP Missense_Mutation 2 102504327 G T 44 100 BRCA TCGA-A8-A09X GPR155 SNP Missense_Mutation 2 175324714 C A 31 58 BRCA TCGA-A8-A09X STAT4 SNP Missense_Mutation 2 191919242 A G 10 69 BRCA TCGA-A8-A09X ASXL2 DNP Nonsense_Mutation 2 25976464 CA AT 29 99 BRCA TCGA-A8-A09X EPAS1 SNP Missense_Mutation 2 46611734 G A 40 62 BRCA TCGA-A8-A09X OTX1 SNP Silent 2 63282998 G A 40 46 BRCA TCGA-A8-A09X MACROD2 SNP Silent 20 15866446 A G 3 51 BRCA TCGA-A8-A09X MYLK2 SNP Missense_Mutation 20 30419874 C T 19 70 BRCA TCGA-A8-A09X STAU1 SNP Missense_Mutation 20 47734890 G A 33 69 BRCA TCGA-A8-A09X ADAMTS1 SNP Missense_Mutation 21 28210587 G T 45 76 BRCA TCGA-A8-A09X GPR112 SNP Missense_Mutation 23 135455156 G A 39 53 BRCA TCGA-A8-A09X DCAF8L1 SNP Missense_Mutation 23 27997690 C T 31 61 BRCA TCGA-A8-A09X DMD SNP Missense_Mutation 23 31462683 C T 27 58 BRCA TCGA-A8-A09X DMD SNP Missense_Mutation 23 32481659 T G 62 87 BRCA TCGA-A8-A09X B4GALT4 SNP Missense_Mutation 3 118942945 G A 41 100 BRCA TCGA-A8-A09X MBNL1 SNP Splice_site 3 152150507 C T 21 95 BRCA TCGA-A8-A09X PPM1L SNP Silent 3 160783285 C T 19 45 BRCA TCGA-A8-A09X GPD1L SNP Missense_Mutation 3 32180207 C T 29 53 BRCA TCGA-A8-A09X SEL1L3 SNP Missense_Mutation 4 25831746 C G 29 65 BRCA TCGA-A8-A09X ATP10D SNP Missense_Mutation 4 47525064 A T 10 91 BRCA TCGA-A8-A09X C5orf20 SNP Nonsense_Mutation 5 134782595 G T 44 53 BRCA TCGA-A8-A09X PCDHB17 SNP Missense_Mutation 5 140537273 G A 38 48 BRCA TCGA-A8-A09X ZFPM2 SNP Missense_Mutation 8 106646553 A T 10 90 BRCA TCGA-A8-A09X DLGAP2 SNP Silent 8 1624725 G A 39 48 BRCA TCGA-A8-A09X TSTD2 SNP Silent 9 100368473 T C 64 54 BRCA TCGA-A8-A09X SVEP1 SNP Silent 9 113312283 C T 25 56 BRCA TCGA-A8-A09X GNE SNP Missense_Mutation 9 36217532 G T 35 79 BRCA TCGA-A8-A09X ZBTB5 SNP Missense_Mutation 9 37441772 C T 17 70 BRCA TCGA-A8-A0A1 SYCP1 SNP Missense_Mutation 1 115453031 C T 17 61 BRCA TCGA-A8-A0A1 PADI2 SNP Splice_site 1 17431555 C T 27 74 BRCA TCGA-A8-A0A1 MUTYH SNP Missense_Mutation 1 45800095 T A 60 49 BRCA TCGA-A8-A0A1 TTC39A SNP Missense_Mutation 1 51756290 A G 8 91 BRCA TCGA-A8-A0A1 SELRC1 SNP Missense_Mutation 1 53153745 C T 21 98 BRCA TCGA-A8-A0A1 COL24A1 SNP Nonsense_Mutation 1 86249998 G A 39 50 BRCA TCGA-A8-A0A1 KCNIP2 SNP Silent 10 103590905 A T 15 60 BRCA TCGA-A8-A0A1 SFXN2 SNP Splice_site 10 104491539 G A 39 51 BRCA TCGA-A8-A0A1 ANO5 SNP Missense_Mutation 11 22272512 G A 45 98 BRCA TCGA-A8-A0A1 ATP6V0A2 SNP Nonsense_Mutation 12 124218490 G A 44 75 BRCA TCGA-A8-A0A1 DCP1B SNP Silent 12 2061777 G A 34 32 BRCA TCGA-A8-A0A1 PPP1R1A SNP Missense_Mutation 12 54976558 G A 40 64 BRCA TCGA-A8-A0A1 MTUS2 SNP Silent 13 30066850 A G 8 49 BRCA TCGA-A8-A0A1 CASC5 DEL Frame_Shift_Del 15 40913811 AAAATTTGCTAAAGCATGACAGT - 1 57 BRCA TCGA-A8-A0A1 MAP1A SNP Missense_Mutation 15 43817540 C T 26 53 BRCA TCGA-A8-A0A1 MSLNL SNP Missense_Mutation 16 823012 G C 38 55 BRCA TCGA-A8-A0A1 CHTF18 SNP Silent 16 846999 G A 43 46 BRCA TCGA-A8-A0A1 NOS2 SNP Missense_Mutation 17 26086072 C A 28 57 BRCA TCGA-A8-A0A1 CCL13 SNP Missense_Mutation 17 32685053 C A 18 73 BRCA TCGA-A8-A0A1 KRT34 SNP Missense_Mutation 17 39537409 G A 40 71 BRCA TCGA-A8-A0A1 GALR1 SNP Missense_Mutation 18 74980670 G A 38 82 BRCA TCGA-A8-A0A1 ZNF675 SNP Missense_Mutation 19 23836263 T C 59 54 BRCA TCGA-A8-A0A1 TSHZ3 SNP Missense_Mutation 19 31770617 C T 31 86 BRCA TCGA-A8-A0A1 RYR1 SNP Missense_Mutation 19 38951142 C T 19 61 BRCA TCGA-A8-A0A1 LRP2 SNP Missense_Mutation 2 170029674 C T 25 100 BRCA TCGA-A8-A0A1 HCK SNP Missense_Mutation 20 30689216 G A 38 75 BRCA TCGA-A8-A0A1 SOX10 INS Frame_Shift_Ins 22 38373898 - A 32 96 BRCA TCGA-A8-A0A1 KIAA1644 SNP Missense_Mutation 22 44681446 C T 23 56 BRCA TCGA-A8-A0A1 WDR44 SNP Silent 23 117521341 C T 22 49 BRCA TCGA-A8-A0A1 GABRA3 SNP Missense_Mutation 23 151453148 T A 59 68 BRCA TCGA-A8-A0A1 FOXP3 SNP Silent 23 49107891 G A 38 37 BRCA TCGA-A8-A0A1 GOLGB1 SNP Missense_Mutation 3 121415253 C T 31 61 BRCA TCGA-A8-A0A1 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-A8-A0A1 PCDHGC5 SNP Silent 5 140869114 C T 24 53 BRCA TCGA-A8-A0A1 FAT2 SNP Silent 5 150901072 G A 40 48 BRCA TCGA-A8-A0A1 LOC728554 SNP Missense_Mutation 5 177309706 C T 27 88 BRCA TCGA-A8-A0A1 AKAP12 DEL Frame_Shift_Del 6 151673850 G - 45 70 BRCA TCGA-A8-A0A1 BTNL2 SNP Missense_Mutation 6 32372739 G T 48 79 BRCA TCGA-A8-A0A1 RREB1 SNP Silent 6 7226853 G A 39 44 BRCA TCGA-A8-A0A1 KCNK9 SNP Missense_Mutation 8 140630698 G A 39 56 BRCA TCGA-A8-A0A1 NDOR1 SNP Silent 9 140109082 G T 44 58 BRCA TCGA-A8-A0A1 NOL6 SNP Missense_Mutation 9 33467828 C T 23 56 BRCA TCGA-A8-A0A1 DIRAS2 SNP Missense_Mutation 9 93375994 G A 40 98 BRCA TCGA-A8-A0A2 APEX1 SNP Missense_Mutation 14 20923818 G C 43 78 BRCA TCGA-A8-A0A2 LRFN5 SNP Silent 14 42361011 C A 25 53 BRCA TCGA-A8-A0A2 VWA3A SNP Silent 16 22159556 C T 26 57 BRCA TCGA-A8-A0A2 CDH1 DEL In_Frame_Del 16 68842427 GCCCAGAAAATGAAAAAG - 46 61 BRCA TCGA-A8-A0A2 NCOR1 DEL Frame_Shift_Del 17 15995308 CGCTGGTAGAGAGCATAGC - 31 79 BRCA TCGA-A8-A0A2 KRT12 SNP Silent 17 39022941 A G 7 43 BRCA TCGA-A8-A0A2 C18orf34 SNP Missense_Mutation 18 30554604 C A 28 57 BRCA TCGA-A8-A0A2 SPTBN4 SNP Silent 19 40996086 G A 38 35 BRCA TCGA-A8-A0A2 RSPH6A SNP Silent 19 46307978 G A 40 51 BRCA TCGA-A8-A0A2 KCNC3 SNP Silent 19 50827193 G A 40 35 BRCA TCGA-A8-A0A2 SHANK1 SNP Missense_Mutation 19 51189556 G A 43 74 BRCA TCGA-A8-A0A2 IMP4 SNP Missense_Mutation 2 131103227 G A 39 77 BRCA TCGA-A8-A0A2 ZC3H15 SNP Silent 2 187371487 C T 30 51 BRCA TCGA-A8-A0A2 CYP27A1 SNP Silent 2 219674428 C T 19 49 BRCA TCGA-A8-A0A2 PDCD1 SNP Missense_Mutation 2 242794881 C T 19 37 BRCA TCGA-A8-A0A2 FKBP1B SNP Silent 2 24285915 C A 32 54 BRCA TCGA-A8-A0A2 INPP4A SNP Silent 2 99155420 C A 27 53 BRCA TCGA-A8-A0A2 DOK5 SNP Splice_Site 20 53205225 G T 33 100 BRCA TCGA-A8-A0A2 CLDN17 SNP Missense_Mutation 21 31538360 C A 28 50 BRCA TCGA-A8-A0A2 MAGED1 SNP Missense_Mutation 23 51638306 C T 29 49 BRCA TCGA-A8-A0A2 SUSD5 SNP Missense_Mutation 3 33194254 T A 50 67 BRCA TCGA-A8-A0A2 FAM208A SNP Missense_Mutation 3 56667624 T C 49 51 BRCA TCGA-A8-A0A2 SPOCK1 SNP Missense_Mutation 5 136314405 C T 19 56 BRCA TCGA-A8-A0A2 BRD8 SNP Missense_Mutation 5 137506082 C T 32 98 BRCA TCGA-A8-A0A2 PCDHB5 SNP Nonsense_Mutation 5 140516085 G T 33 97 BRCA TCGA-A8-A0A2 GABRG2 SNP Missense_Mutation 5 161576155 G T 46 87 BRCA TCGA-A8-A0A2 AP3B1 SNP Missense_Mutation 5 77458675 T C 52 58 BRCA TCGA-A8-A0A2 ZFPM2 SNP Missense_Mutation 8 106813892 C A 20 67 BRCA TCGA-A8-A0A2 TNFSF15 SNP Silent 9 117553070 G A 34 55 BRCA TCGA-A8-A0A2 TTC39B SNP Silent 9 15177715 A G 2 52 BRCA TCGA-A8-A0A4 ANGPTL7 SNP Silent 1 11254592 C T 32 62 BRCA TCGA-A8-A0A4 RYR2 SNP Silent 1 237550619 C T 23 9 BRCA TCGA-A8-A0A4 OR2L2 SNP Silent 1 248202361 G A 46 32 BRCA TCGA-A8-A0A4 OSCP1 SNP Missense_Mutation 1 36887790 A C 8 46 BRCA TCGA-A8-A0A4 C10orf120 SNP Silent 10 124457723 T A 62 41 BRCA TCGA-A8-A0A4 CISD1 SNP Missense_Mutation 10 60037062 C T 23 76 BRCA TCGA-A8-A0A4 ADAMTS14 SNP Silent 10 72517774 C T 19 46 BRCA TCGA-A8-A0A4 SPI1 SNP Missense_Mutation 11 47377079 C A 27 75 BRCA TCGA-A8-A0A4 TBX3 INS Frame_Shift_Ins 12 115118894 - T 48 47 BRCA TCGA-A8-A0A4 C12orf56 SNP Missense_Mutation 12 64746720 C A 30 56 BRCA TCGA-A8-A0A4 ESR2 SNP Missense_Mutation 14 64727440 G A 39 91 BRCA TCGA-A8-A0A4 TLN2 SNP Nonsense_Mutation 15 63029121 C T 21 85 BRCA TCGA-A8-A0A4 ITGA11 SNP Silent 15 68624257 G A 40 71 BRCA TCGA-A8-A0A4 MAN2C1 SNP Silent 15 75649184 G A 40 49 BRCA TCGA-A8-A0A4 CIITA SNP Silent 16 10996535 T C 60 27 BRCA TCGA-A8-A0A4 CDH1 INS Frame_Shift_Ins 16 68862203 - C 10 89 BRCA TCGA-A8-A0A4 NEURL4 SNP Missense_Mutation 17 7224098 C A 18 53 BRCA TCGA-A8-A0A4 MBD1 SNP Missense_Mutation 18 47796443 G C 47 53 BRCA TCGA-A8-A0A4 ANGPTL4 SNP Splice_site 19 8438768 T G 53 68 BRCA TCGA-A8-A0A4 UGGT1 SNP Missense_Mutation 2 128884987 A G 4 89 BRCA TCGA-A8-A0A4 TTC21B SNP Missense_Mutation 2 166786867 C T 19 99 BRCA TCGA-A8-A0A4 TTN SNP Missense_Mutation 2 179434772 G A 38 89 BRCA TCGA-A8-A0A4 WDR45 SNP Missense_Mutation 23 48932881 C A 28 76 BRCA TCGA-A8-A0A4 NHSL2 SNP Silent 23 71359816 C T 27 38 BRCA TCGA-A8-A0A4 LPAR4 SNP Nonsense_Mutation 23 78011420 G T 41 74 BRCA TCGA-A8-A0A4 ZNF727 SNP Missense_Mutation 7 63529306 C T 30 49 BRCA TCGA-A8-A0A7 CD1B SNP Missense_Mutation 1 158300633 C A 30 50 BRCA TCGA-A8-A0A7 PAPPA2 SNP Missense_Mutation 1 176671822 C G 32 71 BRCA TCGA-A8-A0A7 RGS21 SNP Missense_Mutation 1 192335120 G A 45 81 BRCA TCGA-A8-A0A7 ASPM SNP Missense_Mutation 1 197069570 T C 61 51 BRCA TCGA-A8-A0A7 CELA3A SNP Missense_Mutation 1 22332186 G A 45 63 BRCA TCGA-A8-A0A7 MCOLN3 SNP Silent 1 85486834 G C 33 64 BRCA TCGA-A8-A0A7 MTF2 SNP Silent 1 93594862 G A 33 65 BRCA TCGA-A8-A0A7 TMEM14D SNP Missense_Mutation 10 70304327 G C 45 47 BRCA TCGA-A8-A0A7 TET1 SNP Missense_Mutation 10 70333675 C T 29 54 BRCA TCGA-A8-A0A7 TET1 SNP Silent 10 70451292 C G 32 61 BRCA TCGA-A8-A0A7 GUCY1A2 SNP Missense_Mutation 11 106810633 C T 29 65 BRCA TCGA-A8-A0A7 NCAM1 SNP Missense_Mutation 11 113076824 G A 45 100 BRCA TCGA-A8-A0A7 BACE1 SNP Missense_Mutation 11 117161249 C T 29 100 BRCA TCGA-A8-A0A7 OR8D4 SNP Nonsense_Mutation 11 123777208 C T 29 78 BRCA TCGA-A8-A0A7 ANO3 SNP Silent 11 26569062 C T 32 51 BRCA TCGA-A8-A0A7 AMBRA1 SNP Silent 11 46564007 C T 29 48 BRCA TCGA-A8-A0A7 LPXN SNP Missense_Mutation 11 58338121 G A 41 44 BRCA TCGA-A8-A0A7 SUV420H1 SNP Missense_Mutation 11 67939066 G A 41 100 BRCA TCGA-A8-A0A7 SLC5A8 SNP Silent 12 101555848 G A 36 53 BRCA TCGA-A8-A0A7 CMAS SNP Missense_Mutation 12 22214234 G A 33 97 BRCA TCGA-A8-A0A7 BCAT1 SNP Missense_Mutation 12 25054773 G A 45 53 BRCA TCGA-A8-A0A7 KRT5 SNP Silent 12 52910585 G A 45 60 BRCA TCGA-A8-A0A7 ESYT1 SNP Missense_Mutation 12 56522465 A G 16 71 BRCA TCGA-A8-A0A7 LRRIQ1 SNP Missense_Mutation 12 85518188 G A 33 52 BRCA TCGA-A8-A0A7 WNK1 SNP Missense_Mutation 12 994442 C T 29 70 BRCA TCGA-A8-A0A7 NBEA SNP Missense_Mutation 13 36202288 G A 37 100 BRCA TCGA-A8-A0A7 SERPINE3 SNP Missense_Mutation 13 51915321 G A 45 56 BRCA TCGA-A8-A0A7 SYNE2 SNP Missense_Mutation 14 64669610 G C 45 100 BRCA TCGA-A8-A0A7 ST20-MTHFS SNP Missense_Mutation 15 80181521 G C 47 63 BRCA TCGA-A8-A0A7 BLM SNP Missense_Mutation 15 91293183 G A 33 56 BRCA TCGA-A8-A0A7 GP2 SNP Silent 16 20331055 G C 33 57 BRCA TCGA-A8-A0A7 CDH1 SNP Missense_Mutation 16 68844139 G A 45 94 BRCA TCGA-A8-A0A7 PLCG2 SNP Missense_Mutation 16 81969832 C G 29 59 BRCA TCGA-A8-A0A7 ASIC2 SNP Silent 17 31439028 G A 33 56 BRCA TCGA-A8-A0A7 TMEM99 SNP Missense_Mutation 17 38991475 C T 32 59 BRCA TCGA-A8-A0A7 ANKFY1 SNP Missense_Mutation 17 4109717 C T 31 77 BRCA TCGA-A8-A0A7 RPL26 SNP Missense_Mutation 17 8285480 C T 31 95 BRCA TCGA-A8-A0A7 MYOM1 SNP Silent 18 3116332 C T 29 59 BRCA TCGA-A8-A0A7 CCDC11 SNP Nonsense_Mutation 18 47787564 C A 32 75 BRCA TCGA-A8-A0A7 TCF4 SNP Silent 18 52896160 G A 45 54 BRCA TCGA-A8-A0A7 PDE4A SNP Silent 19 10572600 G A 45 57 BRCA TCGA-A8-A0A7 RYR1 SNP Splice_site 19 38966090 G A 39 64 BRCA TCGA-A8-A0A7 ZNF574 SNP Missense_Mutation 19 42585168 G A 46 64 BRCA TCGA-A8-A0A7 SYMPK SNP Splice_Site 19 46341874 C G 32 91 BRCA TCGA-A8-A0A7 ZNF160 SNP Missense_Mutation 19 53573310 C G 32 44 BRCA TCGA-A8-A0A7 LONP1 SNP Missense_Mutation 19 5692118 G A 37 49 BRCA TCGA-A8-A0A7 TMEM87B SNP Missense_Mutation 2 112873704 C T 29 78 BRCA TCGA-A8-A0A7 MGAT5 SNP Missense_Mutation 2 135012084 G A 37 79 BRCA TCGA-A8-A0A7 HAT1 SNP Nonsense_Mutation 2 172848213 C T 29 99 BRCA TCGA-A8-A0A7 ABCG5 SNP Missense_Mutation 2 44040269 G C 33 47 BRCA TCGA-A8-A0A7 ADD2 SNP Silent 2 70905998 G A 37 49 BRCA TCGA-A8-A0A7 ITCH SNP Missense_Mutation 20 33026307 G A 45 69 BRCA TCGA-A8-A0A7 TGIF2-C20ORF24 SNP Missense_Mutation 20 35207199 G A 45 79 BRCA TCGA-A8-A0A7 TGM2 SNP Silent 20 36776435 G A 41 61 BRCA TCGA-A8-A0A7 NCOA3 SNP Missense_Mutation 20 46252812 C A 29 100 BRCA TCGA-A8-A0A7 MYH9 SNP Missense_Mutation 22 36745008 G C 35 78 BRCA TCGA-A8-A0A7 EP300 SNP Nonsense_Mutation 22 41545099 C T 29 97 BRCA TCGA-A8-A0A7 ENOX2 SNP Missense_Mutation 23 129822967 C T 29 89 BRCA TCGA-A8-A0A7 KDM5C SNP Missense_Mutation 23 53223539 C T 31 91 BRCA TCGA-A8-A0A7 TMPRSS7 SNP Silent 3 111768781 C G 32 37 BRCA TCGA-A8-A0A7 PIK3CB SNP Missense_Mutation 3 138474685 C T 32 76 BRCA TCGA-A8-A0A7 PIK3CA SNP Missense_Mutation 3 178938934 G A 45 98 BRCA TCGA-A8-A0A7 DVL3 SNP Missense_Mutation 3 183883238 C T 30 86 BRCA TCGA-A8-A0A7 ROBO1 SNP Silent 3 78666819 C G 29 49 BRCA TCGA-A8-A0A7 BMP3 SNP Silent 4 81967616 G A 33 63 BRCA TCGA-A8-A0A7 PCDHA2 SNP Silent 5 140176479 C A 31 53 BRCA TCGA-A8-A0A7 VWA7 SNP Missense_Mutation 6 31733811 G A 37 74 BRCA TCGA-A8-A0A7 SKIV2L SNP Silent 6 31931758 C T 29 68 BRCA TCGA-A8-A0A7 CTTNBP2 SNP Nonsense_Mutation 7 117432081 G C 45 63 BRCA TCGA-A8-A0A7 ZNF800 SNP Missense_Mutation 7 127013543 G A 33 96 BRCA TCGA-A8-A0A7 STK31 SNP Missense_Mutation 7 23827616 G T 45 90 BRCA TCGA-A8-A0A7 COL1A2 SNP Missense_Mutation 7 94047827 G C 33 64 BRCA TCGA-A8-A0A7 FBXO43 SNP Missense_Mutation 8 101153488 C T 29 76 BRCA TCGA-A8-A0A7 PABPC1 SNP Missense_Mutation 8 101719153 G A 33 96 BRCA TCGA-A8-A0A7 PTBP3 SNP Missense_Mutation 9 114997156 G A 45 76 BRCA TCGA-A8-A0A9 PRRC2C SNP Missense_Mutation 1 171482185 G A 40 100 BRCA TCGA-A8-A0A9 LAMB3 SNP Missense_Mutation 1 209790887 C T 29 70 BRCA TCGA-A8-A0A9 COL24A1 SNP Missense_Mutation 1 86578258 C A 21 79 BRCA TCGA-A8-A0A9 FRMD4A DEL In_Frame_Del 10 13702348 CTT - 24 65 BRCA TCGA-A8-A0A9 ARHGAP21 SNP Missense_Mutation 10 24874774 C G 32 60 BRCA TCGA-A8-A0A9 ZMYND11 SNP Missense_Mutation 10 292731 C G 29 100 BRCA TCGA-A8-A0A9 FBXO18 SNP Nonsense_Mutation 10 5945069 C T 29 83 BRCA TCGA-A8-A0A9 FRA10AC1 SNP Missense_Mutation 10 95459821 C G 29 93 BRCA TCGA-A8-A0A9 PARVA SNP Missense_Mutation 11 12495366 G A 37 94 BRCA TCGA-A8-A0A9 QSER1 SNP Missense_Mutation 11 32955992 C T 24 73 BRCA TCGA-A8-A0A9 ST5 SNP Missense_Mutation 11 8732399 C T 27 84 BRCA TCGA-A8-A0A9 SBNO1 SNP Missense_Mutation 12 123812064 C T 31 100 BRCA TCGA-A8-A0A9 NAV3 SNP Silent 12 78515855 G A 39 54 BRCA TCGA-A8-A0A9 PRTG SNP Missense_Mutation 15 55932020 C T 19 73 BRCA TCGA-A8-A0A9 RASGRF1 SNP Silent 15 79298692 G A 40 47 BRCA TCGA-A8-A0A9 CDH1 SNP Nonsense_Mutation 16 68849604 C T 21 50 BRCA TCGA-A8-A0A9 DHX38 SNP Missense_Mutation 16 72141353 C A 18 68 BRCA TCGA-A8-A0A9 ITGAE SNP Missense_Mutation 17 3656666 G A 40 75 BRCA TCGA-A8-A0A9 APOH SNP Missense_Mutation 17 64210602 A T 8 43 BRCA TCGA-A8-A0A9 CNTROB SNP Missense_Mutation 17 7843471 G T 44 58 BRCA TCGA-A8-A0A9 ZNF407 SNP Missense_Mutation 18 72344114 G C 33 59 BRCA TCGA-A8-A0A9 MUC16 SNP Missense_Mutation 19 9086614 G T 33 59 BRCA TCGA-A8-A0A9 UBXN4 SNP Missense_Mutation 2 136519446 G C 33 54 BRCA TCGA-A8-A0A9 PVALB SNP Missense_Mutation 22 37209714 C T 21 83 BRCA TCGA-A8-A0A9 GPC3 SNP Missense_Mutation 23 132887945 C T 31 93 BRCA TCGA-A8-A0A9 SMC1A SNP Missense_Mutation 23 53439190 C G 32 93 BRCA TCGA-A8-A0A9 BBX SNP Missense_Mutation 3 107429348 G C 41 84 BRCA TCGA-A8-A0A9 EPHB1 SNP Silent 3 134884859 G A 39 34 BRCA TCGA-A8-A0A9 TRPC1 SNP Missense_Mutation 3 142443528 G A 41 79 BRCA TCGA-A8-A0A9 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-A8-A0A9 USP19 SNP Missense_Mutation 3 49153206 C T 27 75 BRCA TCGA-A8-A0A9 CCDC66 SNP Missense_Mutation 3 56605211 G C 45 83 BRCA TCGA-A8-A0A9 ADAMTS3 SNP Silent 4 73179510 C T 32 79 BRCA TCGA-A8-A0A9 AKD1 SNP Nonsense_Mutation 6 109820405 G A 45 50 BRCA TCGA-A8-A0A9 HIST1H2AH SNP Silent 6 27115249 C G 23 53 BRCA TCGA-A8-A0A9 PTK7 SNP Missense_Mutation 6 43111207 G T 33 72 BRCA TCGA-A8-A0A9 EPHB4 SNP Silent 7 100410501 C T 29 60 BRCA TCGA-A8-A0A9 INHBA SNP Silent 7 41739757 G C 39 62 BRCA TCGA-A8-A0A9 PCLO SNP Missense_Mutation 7 82538314 C T 19 87 BRCA TCGA-A8-A0A9 KCNB2 SNP Missense_Mutation 8 73848282 G A 38 56 BRCA TCGA-A8-A0A9 GRIN3A SNP Missense_Mutation 9 104335778 C T 19 56 BRCA TCGA-A8-A0A9 GTF3C4 SNP Missense_Mutation 9 135554618 G A 33 95 BRCA TCGA-A8-A0A9 CNTNAP3 SNP Missense_Mutation 9 39109165 C T 27 42 BRCA TCGA-A8-A0A9 NTRK2 SNP Missense_Mutation 9 87322806 G A 40 64 BRCA TCGA-A8-A0AB FLG SNP Missense_Mutation 1 152282683 C T 19 36 BRCA TCGA-A8-A0AB CLSPN DEL Frame_Shift_Del 1 36202522 T - 56 70 BRCA TCGA-A8-A0AB INPP5B SNP Missense_Mutation 1 38409488 C T 23 56 BRCA TCGA-A8-A0AB IPO13 SNP Missense_Mutation 1 44424472 C G 24 79 BRCA TCGA-A8-A0AB KIAA1462 SNP Missense_Mutation 10 30318244 C G 20 55 BRCA TCGA-A8-A0AB SNRPN SNP Missense_Mutation 15 25221514 G T 40 69 BRCA TCGA-A8-A0AB HERC2 SNP Silent 15 28421867 A G 14 41 BRCA TCGA-A8-A0AB SRP14 DEL In_Frame_Del 15 40330494 TCT - 50 92 BRCA TCGA-A8-A0AB CDH1 INS Frame_Shift_Ins 16 68847278 - A 51 53 BRCA TCGA-A8-A0AB MYO1D SNP Missense_Mutation 17 30821847 C T 23 57 BRCA TCGA-A8-A0AB ERBB2 SNP Missense_Mutation 17 37880220 T C 63 90 BRCA TCGA-A8-A0AB CHD3 SNP Missense_Mutation 17 7796758 G C 45 92 BRCA TCGA-A8-A0AB MYH10 SNP Missense_Mutation 17 8439105 C A 29 100 BRCA TCGA-A8-A0AB CCDC159 DEL In_Frame_Del 19 11465265 GGC - 43 60 BRCA TCGA-A8-A0AB MAST1 SNP Silent 19 12984565 G A 39 50 BRCA TCGA-A8-A0AB SLC6A16 SNP Missense_Mutation 19 49814294 G A 39 60 BRCA TCGA-A8-A0AB RUNX1 SNP Missense_Mutation 21 36252946 T C 60 92 BRCA TCGA-A8-A0AB FAM47A SNP Missense_Mutation 23 34149384 G A 39 54 BRCA TCGA-A8-A0AB SMARCC1 SNP Silent 3 47676719 G C 39 45 BRCA TCGA-A8-A0AB PCDHA10 SNP Silent 5 140236812 G A 40 45 BRCA TCGA-A8-A0AB ALDH8A1 SNP Missense_Mutation 6 135239594 C T 31 85 BRCA TCGA-A8-A0AB TRIP6 DEL Frame_Shift_Del 7 100468023 T - 55 88 BRCA TCGA-A8-A0AB C8orf33 SNP Silent 8 146278127 C T 20 64 BRCA TCGA-A8-A0AD PIGR SNP Missense_Mutation 1 207112736 G T 40 39 BRCA TCGA-A8-A0AD OR2T3 SNP Missense_Mutation 1 248637580 T A 51 49 BRCA TCGA-A8-A0AD LRRC55 SNP Silent 11 56949488 C T 28 62 BRCA TCGA-A8-A0AD NPAS4 SNP Missense_Mutation 11 66190213 G A 40 94 BRCA TCGA-A8-A0AD SCARB1 SNP Missense_Mutation 12 125271972 G C 42 80 BRCA TCGA-A8-A0AD PCDH9 SNP Missense_Mutation 13 67205358 G T 36 60 BRCA TCGA-A8-A0AD NLRC3 SNP Missense_Mutation 16 3613263 C T 27 52 BRCA TCGA-A8-A0AD CTCF SNP Missense_Mutation 16 67645922 C T 29 99 BRCA TCGA-A8-A0AD ZFHX3 INS Frame_Shift_Ins 16 72830410 - T 28 68 BRCA TCGA-A8-A0AD NF1 INS Splice_Site 17 29508508 - T 44 81 BRCA TCGA-A8-A0AD KIF2B SNP Missense_Mutation 17 51900728 G A 38 50 BRCA TCGA-A8-A0AD GRIN2C SNP Missense_Mutation 17 72840611 C T 22 84 BRCA TCGA-A8-A0AD NPC1 SNP Missense_Mutation 18 21118629 T A 58 79 BRCA TCGA-A8-A0AD CIRBP SNP Missense_Mutation 19 1272041 G A 45 81 BRCA TCGA-A8-A0AD WDR83 SNP Missense_Mutation 19 12783689 G C 45 94 BRCA TCGA-A8-A0AD NDUFA3 SNP Missense_Mutation 19 54609692 T G 63 34 BRCA TCGA-A8-A0AD RPS5 SNP Missense_Mutation 19 58899562 T C 56 79 BRCA TCGA-A8-A0AD ITGAV SNP Missense_Mutation 2 187455212 C G 31 60 BRCA TCGA-A8-A0AD OTOS SNP Silent 2 241079498 C T 28 69 BRCA TCGA-A8-A0AD POMC SNP Silent 2 25384121 C A 21 49 BRCA TCGA-A8-A0AD STON1-GTF2A1L SNP Missense_Mutation 2 48808110 C T 21 70 BRCA TCGA-A8-A0AD IFT52 SNP Nonsense_Mutation 20 42271262 C T 21 81 BRCA TCGA-A8-A0AD RUNX1 SNP Missense_Mutation 21 36171616 G A 36 72 BRCA TCGA-A8-A0AD MTM1 SNP Missense_Mutation 23 149809752 A G 4 87 BRCA TCGA-A8-A0AD OTUD6A SNP Silent 23 69283094 G A 38 32 BRCA TCGA-A8-A0AD FOXP1 SNP Splice_Site 3 71090684 C T 24 99 BRCA TCGA-A8-A0AD IL17RC SNP Silent 3 9959098 C T 28 55 BRCA TCGA-A8-A0AD BTC SNP Missense_Mutation 4 75681165 C T 23 59 BRCA TCGA-A8-A0AD PCDHGA9 DEL Frame_Shift_Del 5 140782854 A - 10 74 BRCA TCGA-A8-A0AD NSD1 SNP Silent 5 176562356 A G 15 59 BRCA TCGA-A8-A0AD HNRNPAB SNP Silent 5 177634110 T C 52 77 BRCA TCGA-A8-A0AD KIF6 SNP Missense_Mutation 6 39330216 T A 56 79 BRCA TCGA-A8-A0AD CUX1 SNP Silent 7 101840509 A T 8 24 BRCA TCGA-A8-A0AD PAX4 SNP Silent 7 127253883 C A 22 58 BRCA TCGA-A8-A0AD FAM135B SNP Silent 8 139144953 G A 40 51 BRCA TCGA-A8-A0AD ADAMDEC1 SNP Silent 8 24259485 T G 64 44 BRCA TCGA-AC-A23C AIM2 SNP Missense_Mutation 1 159043162 G A 46 49 BRCA TCGA-AC-A23C ATP1A4 SNP Silent 1 160124840 T C 49 46 BRCA TCGA-AC-A23C KCNT2 SNP Missense_Mutation 1 196394988 C T 32 98 BRCA TCGA-AC-A23C CENPF SNP Silent 1 214816025 C A 32 49 BRCA TCGA-AC-A23C HEATR1 SNP Missense_Mutation 1 236766623 C G 29 82 BRCA TCGA-AC-A23C TMCO2 SNP Missense_Mutation 1 40713810 C G 30 64 BRCA TCGA-AC-A23C DNMBP SNP Silent 10 101715245 G C 41 50 BRCA TCGA-AC-A23C SMC3 SNP Missense_Mutation 10 112362317 G A 42 98 BRCA TCGA-AC-A23C GPAM SNP Silent 10 113920522 T G 61 63 BRCA TCGA-AC-A23C USP6NL SNP Silent 10 11505403 A C 10 40 BRCA TCGA-AC-A23C LYZL2 SNP Missense_Mutation 10 30915760 T C 64 60 BRCA TCGA-AC-A23C PTEN DEL Frame_Shift_Del 10 89711928 AA - 13 69 BRCA TCGA-AC-A23C ANGPTL5 SNP Silent 11 101777841 G A 45 52 BRCA TCGA-AC-A23C MUC2 SNP Missense_Mutation 11 1096456 G C 37 62 BRCA TCGA-AC-A23C USP47 SNP Silent 11 11957978 C T 27 41 BRCA TCGA-AC-A23C ETS1 SNP Missense_Mutation 11 128426192 C A 17 60 BRCA TCGA-AC-A23C VWCE SNP Missense_Mutation 11 61026260 G A 37 57 BRCA TCGA-AC-A23C RAB3IL1 SNP Missense_Mutation 11 61674931 C G 32 65 BRCA TCGA-AC-A23C RIN1 SNP Missense_Mutation 11 66102191 G A 39 83 BRCA TCGA-AC-A23C INPPL1 SNP Missense_Mutation 11 71942144 G C 47 96 BRCA TCGA-AC-A23C KIAA1467 SNP Silent 12 13208573 G A 33 85 BRCA TCGA-AC-A23C EP400 DEL In_Frame_Del 12 132475210 AGA - 15 50 BRCA TCGA-AC-A23C PTPRO SNP Missense_Mutation 12 15636960 C T 29 85 BRCA TCGA-AC-A23C OR6C76 SNP Silent 12 55820676 C G 32 35 BRCA TCGA-AC-A23C DNAJC14 DEL Frame_Shift_Del 12 56222324 CT - 24 61 BRCA TCGA-AC-A23C ZMYM5 SNP Missense_Mutation 13 20398780 G A 45 67 BRCA TCGA-AC-A23C TBC1D4 SNP Missense_Mutation 13 75900540 G A 33 73 BRCA TCGA-AC-A23C AHNAK2 SNP Missense_Mutation 14 105416842 T A 56 59 BRCA TCGA-AC-A23C SIX4 SNP Missense_Mutation 14 61180171 G A 42 96 BRCA TCGA-AC-A23C SLC24A4 SNP Missense_Mutation 14 92909751 G A 40 54 BRCA TCGA-AC-A23C MTMR10 SNP Silent 15 31233955 G C 41 43 BRCA TCGA-AC-A23C ZFYVE19 SNP Missense_Mutation 15 41100005 G C 41 49 BRCA TCGA-AC-A23C ADAMTSL3 SNP Silent 15 84657563 G A 48 34 BRCA TCGA-AC-A23C ALPK3 SNP Silent 15 85382269 T C 59 56 BRCA TCGA-AC-A23C FOPNL SNP Missense_Mutation 16 15961319 A C 2 53 BRCA TCGA-AC-A23C N4BP1 SNP Missense_Mutation 16 48595832 C T 22 90 BRCA TCGA-AC-A23C GLG1 DEL Frame_Shift_Del 16 74501683 AG - 7 93 BRCA TCGA-AC-A23C NCOR1 SNP Nonsense_Mutation 17 15965432 G A 45 89 BRCA TCGA-AC-A23C TAOK1 SNP Silent 17 27778590 C T 25 57 BRCA TCGA-AC-A23C NF1 SNP Missense_Mutation 17 29553598 A T 9 88 BRCA TCGA-AC-A23C SLFN11 SNP Nonsense_Mutation 17 33679925 G C 45 47 BRCA TCGA-AC-A23C ZPBP2 SNP Missense_Mutation 17 38032947 C T 24 83 BRCA TCGA-AC-A23C ZPBP2 SNP Missense_Mutation 17 38033019 C G 32 55 BRCA TCGA-AC-A23C PPM1D SNP Nonsense_Mutation 17 58740529 C A 27 59 BRCA TCGA-AC-A23C SS18 SNP Missense_Mutation 18 23658072 A T 9 88 BRCA TCGA-AC-A23C HDHD2 SNP Missense_Mutation 18 44660972 C G 29 94 BRCA TCGA-AC-A23C PPP5C SNP Missense_Mutation 19 46893337 T C 50 75 BRCA TCGA-AC-A23C ZNF274 SNP Missense_Mutation 19 58724135 A G 14 74 BRCA TCGA-AC-A23C ZNF544 SNP Missense_Mutation 19 58774007 C T 29 49 BRCA TCGA-AC-A23C TBC1D8 SNP Missense_Mutation 2 101638182 C G 29 84 BRCA TCGA-AC-A23C KCNS3 SNP Missense_Mutation 2 18112363 C G 21 87 BRCA TCGA-AC-A23C BCS1L SNP Missense_Mutation 2 219527298 C T 32 100 BRCA TCGA-AC-A23C CAD SNP Missense_Mutation 2 27447691 G T 43 85 BRCA TCGA-AC-A23C ANKRD36 SNP Missense_Mutation 2 97864218 C T 21 54 BRCA TCGA-AC-A23C XKR7 SNP Missense_Mutation 20 30585069 C T 27 74 BRCA TCGA-AC-A23C CHD6 SNP Silent 20 40049605 T G 49 44 BRCA TCGA-AC-A23C SLC9A8 SNP Missense_Mutation 20 48479578 A T 6 90 BRCA TCGA-AC-A23C OSBP2 SNP Missense_Mutation 22 31289126 C T 24 27 BRCA TCGA-AC-A23C TMPRSS6 SNP Silent 22 37492106 G A 33 78 BRCA TCGA-AC-A23C FMR1 SNP Missense_Mutation 23 147007128 A C 16 89 BRCA TCGA-AC-A23C RBBP7 SNP Splice_Site 23 16863950 C A 18 96 BRCA TCGA-AC-A23C TAB3 SNP Silent 23 30873374 G A 36 53 BRCA TCGA-AC-A23C FAM47A SNP Missense_Mutation 23 34149096 A G 9 49 BRCA TCGA-AC-A23C USP51 SNP Missense_Mutation 23 55513916 T C 63 67 BRCA TCGA-AC-A23C EDA2R SNP Silent 23 65824309 T C 56 64 BRCA TCGA-AC-A23C MED12 SNP Missense_Mutation 23 70351944 A T 9 85 BRCA TCGA-AC-A23C TBX22 SNP Missense_Mutation 23 79279656 C T 19 55 BRCA TCGA-AC-A23C POF1B SNP Missense_Mutation 23 84601036 G C 45 60 BRCA TCGA-AC-A23C GOLGB1 SNP Missense_Mutation 3 121410623 C G 29 73 BRCA TCGA-AC-A23C COL6A6 SNP Missense_Mutation 3 130318623 C A 22 55 BRCA TCGA-AC-A23C LRRIQ4 SNP Missense_Mutation 3 169550895 A G 9 60 BRCA TCGA-AC-A23C PIK3CA SNP Missense_Mutation 3 178936095 A G 7 90 BRCA TCGA-AC-A23C DCUN1D1 SNP Nonsense_Mutation 3 182683349 C A 32 100 BRCA TCGA-AC-A23C CADM2 SNP Missense_Mutation 3 85984959 A C 5 80 BRCA TCGA-AC-A23C NPY1R SNP Missense_Mutation 4 164247139 C T 29 59 BRCA TCGA-AC-A23C TACC3 SNP Nonsense_Mutation 4 1742588 G T 45 52 BRCA TCGA-AC-A23C LNX1 SNP Missense_Mutation 4 54343119 C T 31 81 BRCA TCGA-AC-A23C DGKQ SNP Missense_Mutation 4 961414 C G 29 85 BRCA TCGA-AC-A23C TRIO SNP Missense_Mutation 5 14358362 G C 41 98 BRCA TCGA-AC-A23C DOCK2 SNP Missense_Mutation 5 169141180 C T 30 100 BRCA TCGA-AC-A23C AHRR SNP Silent 5 427993 C T 30 62 BRCA TCGA-AC-A23C TRIM23 SNP Missense_Mutation 5 64905155 C A 21 97 BRCA TCGA-AC-A23C TTC37 SNP Splice_Site 5 94852114 C A 32 82 BRCA TCGA-AC-A23C PDE10A SNP Missense_Mutation 6 165756912 C T 26 100 BRCA TCGA-AC-A23C TCP10 SNP Missense_Mutation 6 167796310 C T 23 32 BRCA TCGA-AC-A23C HIST1H2BN SNP Silent 6 27806523 G A 33 83 BRCA TCGA-AC-A23C UHRF1BP1 SNP Silent 6 34803151 C T 29 74 BRCA TCGA-AC-A23C KIAA1009 SNP Missense_Mutation 6 84881431 C T 29 75 BRCA TCGA-AC-A23C DOCK4 SNP Missense_Mutation 7 111398727 C T 29 100 BRCA TCGA-AC-A23C ZNF786 SNP Missense_Mutation 7 148767947 G T 44 89 BRCA TCGA-AC-A23C ASIC3 SNP Missense_Mutation 7 150749825 A G 13 70 BRCA TCGA-AC-A23C CDK14 SNP Missense_Mutation 7 90355956 G A 45 83 BRCA TCGA-AC-A23C FER1L6 SNP Missense_Mutation 8 125029949 G C 42 72 BRCA TCGA-AC-A23C ZNF462 DEL Frame_Shift_Del 9 109746549 TACC - 57 52 BRCA TCGA-AC-A23C PALM2-AKAP2 SNP Missense_Mutation 9 112930764 A G 9 78 BRCA TCGA-AC-A23C TLN1 SNP Missense_Mutation 9 35713277 C T 30 100 BRCA TCGA-AC-A23E CEP85 SNP Missense_Mutation 1 26581958 G C 43 93 BRCA TCGA-AC-A23E SFMBT2 SNP Missense_Mutation 10 7409820 G C 47 99 BRCA TCGA-AC-A23E COMMD9 SNP Silent 11 36297762 G A 36 57 BRCA TCGA-AC-A23E C11orf84 SNP Missense_Mutation 11 63585595 C T 21 57 BRCA TCGA-AC-A23E C2CD3 SNP Silent 11 73759252 C A 30 51 BRCA TCGA-AC-A23E OR6C65 SNP Missense_Mutation 12 55794527 C T 19 52 BRCA TCGA-AC-A23E SLC25A47 SNP Silent 14 100793566 G A 39 4 BRCA TCGA-AC-A23E MAP2K4 DEL Splice_Site 17 11984671 AG - 7 89 BRCA TCGA-AC-A23E NCOR1 SNP Nonsense_Mutation 17 16012112 C A 32 89 BRCA TCGA-AC-A23E C17orf66 SNP Missense_Mutation 17 34182281 G A 35 59 BRCA TCGA-AC-A23E EME1 SNP Missense_Mutation 17 48453257 G C 41 54 BRCA TCGA-AC-A23E MRPL38 SNP Nonsense_Mutation 17 73897305 C T 21 98 BRCA TCGA-AC-A23E ZNF560 SNP Missense_Mutation 19 9577375 G A 39 49 BRCA TCGA-AC-A23E CLCN4 SNP Missense_Mutation 23 10180564 G T 44 76 BRCA TCGA-AC-A23E FTHL17 SNP Missense_Mutation 23 31089761 C A 27 67 BRCA TCGA-AC-A23E NIT2 SNP Silent 3 100058685 G A 37 36 BRCA TCGA-AC-A23E ABTB1 SNP Silent 3 127398956 C T 27 49 BRCA TCGA-AC-A23E PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-AC-A23E SMAD5 DEL Frame_Shift_Del 5 135489806 AG - 3 56 BRCA TCGA-AC-A23E RNF183 SNP Missense_Mutation 9 116060076 G A 39 50 BRCA TCGA-AC-A23E PCSK5 DEL Frame_Shift_Del 9 78790144 AATGGAATGA - 9 50 BRCA TCGA-AN-A03X UBE4B SNP Silent 1 10186920 T C 61 53 BRCA TCGA-AN-A03X ANKRD34A SNP Missense_Mutation 1 145473902 G T 38 66 BRCA TCGA-AN-A03X SLC45A3 SNP Nonsense_Mutation 1 205631997 C A 29 57 BRCA TCGA-AN-A03X ZNF669 SNP Missense_Mutation 1 247263686 C G 21 52 BRCA TCGA-AN-A03X LRRC41 SNP Silent 1 46745910 G A 36 57 BRCA TCGA-AN-A03X GRIA4 SNP Silent 11 105623906 C T 19 50 BRCA TCGA-AN-A03X OR6M1 SNP Missense_Mutation 11 123676738 G A 40 55 BRCA TCGA-AN-A03X OR52J3 SNP Silent 11 5068157 C T 19 60 BRCA TCGA-AN-A03X SLAIN1 SNP Missense_Mutation 13 78335020 C T 32 82 BRCA TCGA-AN-A03X AHNAK2 DEL Frame_Shift_Del 14 105409390 A - 9 75 BRCA TCGA-AN-A03X AHNAK2 INS Frame_Shift_Ins 14 105409649 - TT 35 43 BRCA TCGA-AN-A03X ZFP36L1 INS Frame_Shift_Ins 14 69257141 - C 46 48 BRCA TCGA-AN-A03X MOAP1 SNP Missense_Mutation 14 93650569 C T 32 69 BRCA TCGA-AN-A03X PPIB SNP Missense_Mutation 15 64449058 G A 46 76 BRCA TCGA-AN-A03X LOC645752 SNP Missense_Mutation 15 78212125 C T 19 45 BRCA TCGA-AN-A03X FAM57B SNP Missense_Mutation 16 30037078 G A 43 97 BRCA TCGA-AN-A03X MYH8 SNP Missense_Mutation 17 10304230 G T 46 100 BRCA TCGA-AN-A03X RNFT1 SNP Missense_Mutation 17 58040308 C T 32 96 BRCA TCGA-AN-A03X GATA6 SNP Silent 18 19761419 A G 8 44 BRCA TCGA-AN-A03X ARL6IP6 SNP Missense_Mutation 2 153616311 A C 4 81 BRCA TCGA-AN-A03X NCKAP1 SNP Missense_Mutation 2 183843631 A T 5 92 BRCA TCGA-AN-A03X CXCR1 SNP Missense_Mutation 2 219029024 A G 12 88 BRCA TCGA-AN-A03X JAG1 SNP Missense_Mutation 20 10629222 G A 36 86 BRCA TCGA-AN-A03X BMP2 SNP Missense_Mutation 20 6759416 C T 19 100 BRCA TCGA-AN-A03X TTC3 SNP Missense_Mutation 21 38538542 G T 46 64 BRCA TCGA-AN-A03X IL13RA2 SNP Missense_Mutation 23 114242611 G A 44 50 BRCA TCGA-AN-A03X CSF2RA SNP Silent 23 1428407 C T 23 55 BRCA TCGA-AN-A03X FAM48B1 SNP Missense_Mutation 23 24382429 C G 30 51 BRCA TCGA-AN-A03X HDAC6 SNP Silent 23 48665033 C A 24 56 BRCA TCGA-AN-A03X ALG1L SNP Missense_Mutation 3 125648343 G A 37 54 BRCA TCGA-AN-A03X PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA TCGA-AN-A03X SQSTM1 DEL Frame_Shift_Del 5 179250877 GGACCACC - 43 52 BRCA TCGA-AN-A03X MAP3K1 SNP Nonsense_Mutation 5 56174909 A T 5 86 BRCA TCGA-AN-A03X MAP3K1 DEL Frame_Shift_Del 5 56180503 AG - 7 73 BRCA TCGA-AN-A03X NSUN2 INS Frame_Shift_Ins 5 6633015 - T 6 50 BRCA TCGA-AN-A03X PRICKLE4 SNP Silent 6 41752675 G A 34 50 BRCA TCGA-AN-A03X PIK3CG SNP Missense_Mutation 7 106523570 A T 9 66 BRCA TCGA-AN-A03X PRKDC SNP Missense_Mutation 8 48771163 T C 62 76 BRCA TCGA-AN-A03X WWP1 SNP Missense_Mutation 8 87386346 A T 2 80 BRCA TCGA-AN-A03Y GON4L SNP Silent 1 155783515 C T 31 52 BRCA TCGA-AN-A03Y TLX1NB SNP Silent 10 102849480 C T 23 56 BRCA TCGA-AN-A03Y SLC18A3 SNP Missense_Mutation 10 50820002 G A 38 86 BRCA TCGA-AN-A03Y LGI1 SNP Missense_Mutation 10 95557009 G A 38 68 BRCA TCGA-AN-A03Y DEPDC7 SNP Missense_Mutation 11 33054005 A C 11 90 BRCA TCGA-AN-A03Y UBC SNP Missense_Mutation 12 125396469 T G 58 77 BRCA TCGA-AN-A03Y IQSEC3 SNP Silent 12 250443 C T 19 43 BRCA TCGA-AN-A03Y TPP2 SNP Missense_Mutation 13 103309552 G A 45 99 BRCA TCGA-AN-A03Y COL4A1 SNP Missense_Mutation 13 110864808 C T 23 94 BRCA TCGA-AN-A03Y BORA SNP Missense_Mutation 13 73321056 A T 4 61 BRCA TCGA-AN-A03Y NOP9 SNP Silent 14 24774208 G A 45 54 BRCA TCGA-AN-A03Y HIF1A SNP Silent 14 62187184 T C 63 61 BRCA TCGA-AN-A03Y LRRK1 SNP Missense_Mutation 15 101605666 A G 2 92 BRCA TCGA-AN-A03Y CSPG4 SNP Silent 15 75970186 G A 39 29 BRCA TCGA-AN-A03Y KIF7 SNP Missense_Mutation 15 90185484 G A 37 59 BRCA TCGA-AN-A03Y TMC5 SNP Missense_Mutation 16 19498308 T A 51 90 BRCA TCGA-AN-A03Y CDH1 SNP Nonsense_Mutation 16 68835596 C T 31 67 BRCA TCGA-AN-A03Y NEDD4L SNP Missense_Mutation 18 56063421 C G 30 75 BRCA TCGA-AN-A03Y ZNF586 INS Frame_Shift_Ins 19 58290700 - T 32 54 BRCA TCGA-AN-A03Y MUC16 SNP Silent 19 9056732 C T 23 46 BRCA TCGA-AN-A03Y CST2 SNP Nonsense_Mutation 20 23807084 G A 40 49 BRCA TCGA-AN-A03Y ZBED4 SNP Missense_Mutation 22 50280507 C T 29 96 BRCA TCGA-AN-A03Y OPN1LW SNP Silent 23 153416303 G A 39 25 BRCA TCGA-AN-A03Y HLTF SNP Silent 3 148750058 G A 40 56 BRCA TCGA-AN-A03Y PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-AN-A03Y HRASLS SNP Silent 3 192988399 C A 23 65 BRCA TCGA-AN-A03Y SLC25A48 SNP Nonsense_Mutation 5 135207426 G A 47 51 BRCA TCGA-AN-A03Y HIST1H1T SNP Missense_Mutation 6 26107849 G A 38 47 BRCA TCGA-AN-A03Y HIST1H3G SNP Missense_Mutation 6 26271482 G A 43 95 BRCA TCGA-AN-A03Y TRIM26 SNP Missense_Mutation 6 30157808 G A 40 59 BRCA TCGA-AN-A03Y TNFRSF21 SNP Silent 6 47253822 C T 23 49 BRCA TCGA-AN-A03Y CALCR DEL Frame_Shift_Del 7 93065277 AG - 7 92 BRCA TCGA-AN-A03Y PREX2 SNP Splice_site 8 69012077 A C 3 77 BRCA TCGA-AN-A041 FLG SNP Missense_Mutation 1 152279873 A G 12 43 BRCA TCGA-AN-A041 ISG20L2 SNP Missense_Mutation 1 156697031 C A 32 52 BRCA TCGA-AN-A041 CD1B SNP Missense_Mutation 1 158299375 C T 25 72 BRCA TCGA-AN-A041 PLXDC2 SNP Silent 10 20290912 C A 31 46 BRCA TCGA-AN-A041 ARHGAP12 SNP Missense_Mutation 10 32106730 T C 57 73 BRCA TCGA-AN-A041 CHAT SNP Missense_Mutation 10 50822376 C G 19 67 BRCA TCGA-AN-A041 GATA3 DEL Frame_Shift_Del 10 8111498 GA - 41 100 BRCA TCGA-AN-A041 SLC22A11 SNP Missense_Mutation 11 64332848 G T 41 49 BRCA TCGA-AN-A041 DYNC1H1 SNP Missense_Mutation 14 102494097 G A 40 100 BRCA TCGA-AN-A041 LOC100287282 SNP Missense_Mutation 16 46660467 G T 42 67 BRCA TCGA-AN-A041 RBL2 SNP Missense_Mutation 16 53476745 C T 31 100 BRCA TCGA-AN-A041 DHX8 SNP Missense_Mutation 17 41590796 C T 22 100 BRCA TCGA-AN-A041 ZCCHC2 SNP Missense_Mutation 18 60230264 C A 30 66 BRCA TCGA-AN-A041 SAFB SNP Missense_Mutation 19 5664427 A T 4 75 BRCA TCGA-AN-A041 RTN4 SNP Missense_Mutation 2 55253661 G A 33 56 BRCA TCGA-AN-A041 SNRNP200 SNP Missense_Mutation 2 96944396 G C 35 59 BRCA TCGA-AN-A041 ZAP70 SNP Silent 2 98354541 C T 19 52 BRCA TCGA-AN-A041 NCOA6 SNP Missense_Mutation 20 33345587 G C 42 71 BRCA TCGA-AN-A041 TFDP2 DEL Frame_Shift_Del 3 141671468 GACTGTTTGGGGCCAGGAACTGCCCA - 45 86 BRCA TCGA-AN-A041 RARB SNP Missense_Mutation 3 25502731 C T 22 100 BRCA TCGA-AN-A041 DALRD3 DEL Frame_Shift_Del 3 49055227 C - 26 87 BRCA TCGA-AN-A041 NKD2 SNP Silent 5 1034361 C T 27 49 BRCA TCGA-AN-A041 TNFAIP8 SNP Silent 5 118728611 C T 19 42 BRCA TCGA-AN-A041 TGFBI SNP Silent 5 135385250 C T 27 39 BRCA TCGA-AN-A041 DMGDH SNP Missense_Mutation 5 78325833 T C 51 86 BRCA TCGA-AN-A041 YKT6 SNP Silent 7 44247013 C T 31 23 BRCA TCGA-AN-A041 STK3 SNP Missense_Mutation 8 99719442 C A 30 100 BRCA TCGA-AN-A041 SHC3 SNP Silent 9 91727508 T G 54 56 BRCA TCGA-AN-A049 PRRC2C SNP Missense_Mutation 1 171511272 G A 37 85 BRCA TCGA-AN-A049 TOR1AIP2 SNP Missense_Mutation 1 179815877 T G 63 53 BRCA TCGA-AN-A049 CDC42BPA SNP Missense_Mutation 1 227288919 G A 44 72 BRCA TCGA-AN-A049 OR13G1 SNP Missense_Mutation 1 247835571 C T 27 59 BRCA TCGA-AN-A049 GJB3 SNP Missense_Mutation 1 35251060 G A 38 12 BRCA TCGA-AN-A049 NCDN SNP Missense_Mutation 1 36029024 T G 50 85 BRCA TCGA-AN-A049 SYDE2 SNP Missense_Mutation 1 85656406 T C 52 40 BRCA TCGA-AN-A049 OGDHL SNP Missense_Mutation 10 50946283 G T 43 75 BRCA TCGA-AN-A049 TCN1 SNP Missense_Mutation 11 59629105 C T 19 52 BRCA TCGA-AN-A049 FBXO21 DEL Frame_Shift_Del 12 117612569 AGAGGATTGCAGTACTGGTCAATATATAC - 11 89 BRCA TCGA-AN-A049 KRT2 SNP Silent 12 53042056 G A 46 44 BRCA TCGA-AN-A049 TENC1 SNP Silent 12 53457540 C T 31 47 BRCA TCGA-AN-A049 MDM1 SNP Missense_Mutation 12 68719294 C A 32 73 BRCA TCGA-AN-A049 SIPA1L1 SNP Missense_Mutation 14 72055691 G T 40 100 BRCA TCGA-AN-A049 CSPG4 SNP Silent 15 75982428 C T 26 49 BRCA TCGA-AN-A049 SEPT12 SNP Missense_Mutation 16 4829718 G A 39 62 BRCA TCGA-AN-A049 SLFN12 SNP Silent 17 33749142 G A 33 49 BRCA TCGA-AN-A049 KCNH6 SNP Missense_Mutation 17 61613318 G T 48 96 BRCA TCGA-AN-A049 CD300E SNP Missense_Mutation 17 72619828 G A 39 43 BRCA TCGA-AN-A049 CCNT2 SNP Splice_Site 2 135704036 G A 44 100 BRCA TCGA-AN-A049 DNPEP DEL Frame_Shift_Del 2 220249154 A - 6 43 BRCA TCGA-AN-A049 PFKL SNP Silent 21 45736395 C T 31 47 BRCA TCGA-AN-A049 CUL4B SNP Missense_Mutation 23 119678367 C T 31 98 BRCA TCGA-AN-A049 OCRL SNP Missense_Mutation 23 128692912 G A 39 94 BRCA TCGA-AN-A049 KLHL15 INS Frame_Shift_Ins 23 24024161 - T 44 96 BRCA TCGA-AN-A049 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-AN-A049 WWC1 SNP Missense_Mutation 5 167881097 G A 34 74 BRCA TCGA-AN-A049 HK3 SNP Silent 5 176315434 G A 39 32 BRCA TCGA-AN-A049 MAP3K1 DEL Frame_Shift_Del 5 56178024 AGAT - 7 71 BRCA TCGA-AN-A049 TTC37 SNP Silent 5 94858950 T G 58 32 BRCA TCGA-AN-A049 IRF4 SNP Missense_Mutation 6 397138 G A 37 90 BRCA TCGA-AN-A049 COL12A1 SNP Missense_Mutation 6 75884984 G A 40 82 BRCA TCGA-AN-A049 SLC12A9 SNP Silent 7 100457800 G C 48 48 BRCA TCGA-AN-A049 HOXA5 SNP Missense_Mutation 7 27182916 G A 41 100 BRCA TCGA-AN-A049 HEY1 SNP Missense_Mutation 8 80677554 A T 10 90 BRCA TCGA-AN-A049 ZNF618 SNP Missense_Mutation 9 116764297 G A 48 89 BRCA TCGA-AN-A049 BARHL1 SNP Silent 9 135458232 C T 27 44 BRCA TCGA-AN-A04A OLFML3 SNP Silent 1 114523968 C T 19 50 BRCA TCGA-AN-A04A LMNA SNP Silent 1 156100489 C T 23 24 BRCA TCGA-AN-A04A CDC42BPA SNP Missense_Mutation 1 227182529 C T 23 58 BRCA TCGA-AN-A04A GATA3 DEL Frame_Shift_Del 10 8115907 CGCCCACG - 19 100 BRCA TCGA-AN-A04A OR5R1 SNP Missense_Mutation 11 56184810 G A 42 75 BRCA TCGA-AN-A04A PRKRIR SNP Missense_Mutation 11 76062947 C T 18 65 BRCA TCGA-AN-A04A LOC100286978 SNP Nonsense_Mutation 14 60212423 T A 61 68 BRCA TCGA-AN-A04A STARD9 SNP Silent 15 42984870 C T 32 52 BRCA TCGA-AN-A04A DOC2A SNP Silent 16 30020844 G A 40 50 BRCA TCGA-AN-A04A KCNG4 SNP Missense_Mutation 16 84270499 G A 37 80 BRCA TCGA-AN-A04A FANCA SNP Missense_Mutation 16 89816220 G A 39 42 BRCA TCGA-AN-A04A MYH4 SNP Missense_Mutation 17 10355578 G A 38 73 BRCA TCGA-AN-A04A CCDC102B SNP Missense_Mutation 18 66513554 C T 27 61 BRCA TCGA-AN-A04A PSMD14 SNP Silent 2 162175351 T G 61 62 BRCA TCGA-AN-A04A ALK SNP Silent 2 29416321 G A 40 50 BRCA TCGA-AN-A04A REG3G SNP Missense_Mutation 2 79255029 G T 47 57 BRCA TCGA-AN-A04A TRABD2A SNP Nonsense_Mutation 2 85097825 G A 39 72 BRCA TCGA-AN-A04A GGT1 SNP Missense_Mutation 22 25019807 G A 38 79 BRCA TCGA-AN-A04A NPTXR SNP Silent 22 39219199 C T 22 74 BRCA TCGA-AN-A04A MKL1 SNP Nonsense_Mutation 22 40825739 G A 46 100 BRCA TCGA-AN-A04A MOV10L1 SNP Missense_Mutation 22 50555645 G A 37 88 BRCA TCGA-AN-A04A NDUFA1 SNP Missense_Mutation 23 119005896 G A 39 65 BRCA TCGA-AN-A04A ATRX SNP Missense_Mutation 23 76939543 A T 4 86 BRCA TCGA-AN-A04A SEMA5B SNP Missense_Mutation 3 122629793 C T 19 63 BRCA TCGA-AN-A04A PIK3CB SNP Missense_Mutation 3 138403480 G A 35 79 BRCA TCGA-AN-A04A KIT SNP Missense_Mutation 4 55569972 C T 27 53 BRCA TCGA-AN-A04A HEATR7B2 SNP Silent 5 41005744 G A 46 54 BRCA TCGA-AN-A04A HEATR7B2 SNP Missense_Mutation 5 41015496 G A 33 78 BRCA TCGA-AN-A04A HIST1H1C DEL In_Frame_Del 6 26056019 TTC - 64 89 BRCA TCGA-AN-A04A SH3GL2 SNP Missense_Mutation 9 17787384 C T 25 100 BRCA TCGA-AN-A04C COL11A1 SNP Silent 1 103474022 A C 11 58 BRCA TCGA-AN-A04C HFE2 SNP Silent 1 145415808 G A 40 47 BRCA TCGA-AN-A04C GJA8 SNP Missense_Mutation 1 147381239 C T 23 52 BRCA TCGA-AN-A04C SETDB1 SNP Missense_Mutation 1 150935080 G A 37 62 BRCA TCGA-AN-A04C KPRP SNP Silent 1 152733639 C G 23 26 BRCA TCGA-AN-A04C PLA2G2F SNP Missense_Mutation 1 20469992 G A 40 43 BRCA TCGA-AN-A04C LRRC41 SNP Missense_Mutation 1 46744688 G T 42 67 BRCA TCGA-AN-A04C UPF2 SNP Missense_Mutation 10 11978707 C T 31 83 BRCA TCGA-AN-A04C ROBO4 SNP Silent 11 124765468 G A 38 47 BRCA TCGA-AN-A04C RCN1 SNP Missense_Mutation 11 32125021 A T 1 71 BRCA TCGA-AN-A04C MYO7A SNP Splice_site 11 76924905 G A 41 99 BRCA TCGA-AN-A04C FBXO21 SNP Silent 12 117624363 C T 26 84 BRCA TCGA-AN-A04C TMEM132B SNP Missense_Mutation 12 125834766 C A 30 85 BRCA TCGA-AN-A04C PUS1 SNP Missense_Mutation 12 132426023 A G 2 54 BRCA TCGA-AN-A04C MLL2 SNP Missense_Mutation 12 49427612 G A 39 81 BRCA TCGA-AN-A04C FMNL3 SNP Missense_Mutation 12 50050614 C G 32 64 BRCA TCGA-AN-A04C GLI1 SNP Missense_Mutation 12 57861170 C T 27 72 BRCA TCGA-AN-A04C CD4 SNP Silent 12 6926435 G A 39 44 BRCA TCGA-AN-A04C PCDH9 SNP Nonsense_Mutation 13 67801018 G A 39 63 BRCA TCGA-AN-A04C UGGT2 DEL Frame_Shift_Del 13 96665616 A - 5 88 BRCA TCGA-AN-A04C MTHFD1 SNP Splice_Site 14 64879189 G A 33 96 BRCA TCGA-AN-A04C VPS18 SNP Missense_Mutation 15 41193184 A G 16 92 BRCA TCGA-AN-A04C KAT8 SNP Missense_Mutation 16 31131549 G A 42 82 BRCA TCGA-AN-A04C GRIN2C SNP Missense_Mutation 17 72848644 G C 44 83 BRCA TCGA-AN-A04C TP53 SNP Missense_Mutation 17 7578394 T C 51 89 BRCA TCGA-AN-A04C CCDC11 SNP Missense_Mutation 18 47769434 C T 19 48 BRCA TCGA-AN-A04C DCC SNP Missense_Mutation 18 50731687 C A 21 91 BRCA TCGA-AN-A04C ARHGAP28 SNP Missense_Mutation 18 6859846 G A 38 56 BRCA TCGA-AN-A04C ZNF791 SNP Silent 19 12739846 C T 27 58 BRCA TCGA-AN-A04C GRIK5 SNP Missense_Mutation 19 42558011 C T 27 84 BRCA TCGA-AN-A04C RPL13A SNP Missense_Mutation 19 49993509 C G 19 65 BRCA TCGA-AN-A04C DNAAF3 SNP Missense_Mutation 19 55677931 C T 28 59 BRCA TCGA-AN-A04C CNTNAP5 SNP Missense_Mutation 2 125555732 C T 30 66 BRCA TCGA-AN-A04C LRP1B SNP Silent 2 141762944 G A 39 45 BRCA TCGA-AN-A04C REL SNP Missense_Mutation 2 61147756 G A 33 75 BRCA TCGA-AN-A04C KCNB1 SNP Missense_Mutation 20 47990079 T C 64 68 BRCA TCGA-AN-A04C BCAS1 SNP Missense_Mutation 20 52644991 T G 56 33 BRCA TCGA-AN-A04C TRAPPC10 SNP Splice_site 21 45502669 G A 44 76 BRCA TCGA-AN-A04C DOCK11 SNP Missense_Mutation 23 117742260 A G 14 57 BRCA TCGA-AN-A04C GPC4 SNP Silent 23 132458221 G A 37 53 BRCA TCGA-AN-A04C KCND1 SNP Missense_Mutation 23 48826431 A C 9 73 BRCA TCGA-AN-A04C ARR3 SNP Missense_Mutation 23 69501557 C T 27 49 BRCA TCGA-AN-A04C PIK3CA SNP Missense_Mutation 3 178937498 C G 32 99 BRCA TCGA-AN-A04C MAP3K13 SNP Missense_Mutation 3 185146578 C T 19 72 BRCA TCGA-AN-A04C CNTN4 SNP Missense_Mutation 3 3076325 G T 44 82 BRCA TCGA-AN-A04C NDST3 SNP Silent 4 119176789 G T 47 60 BRCA TCGA-AN-A04C POLR2B SNP Missense_Mutation 4 57852532 A T 12 90 BRCA TCGA-AN-A04C TMEM175 SNP Silent 4 947133 T C 63 59 BRCA TCGA-AN-A04C PCDHB10 SNP Silent 5 140573649 G T 39 39 BRCA TCGA-AN-A04C PAPD7 SNP Missense_Mutation 5 6739853 A G 10 88 BRCA TCGA-AN-A04C ENPP1 SNP Splice_Site 6 132201019 G C 33 76 BRCA TCGA-AN-A04C ZNF292 SNP Missense_Mutation 6 87965899 C T 30 62 BRCA TCGA-AN-A04C GABRR1 SNP Missense_Mutation 6 89907818 G A 40 71 BRCA TCGA-AN-A04C TNPO3 SNP Silent 7 128610253 G A 43 50 BRCA TCGA-AN-A04C GIMAP1 SNP Missense_Mutation 7 150417637 G T 43 53 BRCA TCGA-AN-A04C PEG10 DEL Frame_Shift_Del 7 94293223 TGCTTCG - 55 66 BRCA TCGA-AN-A04C PNMA2 SNP Silent 8 26365956 A G 4 55 BRCA TCGA-AN-A04C TEX15 SNP Missense_Mutation 8 30695203 T A 52 49 BRCA TCGA-AN-A04C ALDOB SNP Missense_Mutation 9 104184143 G A 33 65 BRCA TCGA-AN-A04C RNF20 SNP Missense_Mutation 9 104314674 C T 27 69 BRCA TCGA-AN-A04D PRAMEF22 SNP Silent 1 13036693 A G 2 55 BRCA TCGA-AN-A04D PRAMEF25 SNP Silent 1 13141600 A G 2 48 BRCA TCGA-AN-A04D RORC SNP Missense_Mutation 1 151787698 C T 29 79 BRCA TCGA-AN-A04D RUSC1 SNP Silent 1 155298046 C G 21 59 BRCA TCGA-AN-A04D GON4L SNP Missense_Mutation 1 155744795 G C 36 55 BRCA TCGA-AN-A04D FCRL5 SNP Missense_Mutation 1 157512676 T A 55 64 BRCA TCGA-AN-A04D NOS1AP SNP Missense_Mutation 1 162326813 T C 54 51 BRCA TCGA-AN-A04D UCK2 SNP Missense_Mutation 1 165865513 T C 55 88 BRCA TCGA-AN-A04D F5 SNP Missense_Mutation 1 169541502 C G 29 53 BRCA TCGA-AN-A04D CROCC SNP Silent 1 17263261 G A 46 64 BRCA TCGA-AN-A04D TDRD5 SNP Silent 1 179659890 T C 52 45 BRCA TCGA-AN-A04D IPO9 SNP Silent 1 201798352 G A 39 51 BRCA TCGA-AN-A04D SLC26A9 SNP Missense_Mutation 1 205898368 G T 48 57 BRCA TCGA-AN-A04D USH2A SNP Missense_Mutation 1 216221986 A T 16 59 BRCA TCGA-AN-A04D EXO1 SNP Missense_Mutation 1 242030258 T G 52 45 BRCA TCGA-AN-A04D CEP170 SNP Missense_Mutation 1 243354442 G C 43 95 BRCA TCGA-AN-A04D PHACTR4 SNP Missense_Mutation 1 28800394 T G 62 53 BRCA TCGA-AN-A04D GLIS1 SNP Silent 1 54059934 C T 26 69 BRCA TCGA-AN-A04D C10orf2 SNP Missense_Mutation 10 102748073 C T 30 53 BRCA TCGA-AN-A04D TACC2 SNP Silent 10 123842443 C A 26 51 BRCA TCGA-AN-A04D ADAM12 SNP Silent 10 127760205 C T 17 55 BRCA TCGA-AN-A04D ANKRD30A SNP Silent 10 37430800 T A 55 54 BRCA TCGA-AN-A04D SLC16A12 SNP Missense_Mutation 10 91198842 T C 56 92 BRCA TCGA-AN-A04D RRP12 SNP Missense_Mutation 10 99126551 C G 30 64 BRCA TCGA-AN-A04D OR10S1 SNP Nonsense_Mutation 11 123847945 T A 55 51 BRCA TCGA-AN-A04D OR10V1 SNP Missense_Mutation 11 59480439 T A 54 55 BRCA TCGA-AN-A04D GNPTAB SNP Missense_Mutation 12 102159023 G C 41 86 BRCA TCGA-AN-A04D PRDM4 SNP Silent 12 108134960 G A 33 59 BRCA TCGA-AN-A04D DDX55 SNP Missense_Mutation 12 124094567 C G 18 71 BRCA TCGA-AN-A04D GRIN2B SNP Missense_Mutation 12 13768083 C T 27 89 BRCA TCGA-AN-A04D C12orf40 SNP Missense_Mutation 12 40076596 C A 18 40 BRCA TCGA-AN-A04D COL4A2 SNP Missense_Mutation 13 111155500 G A 46 62 BRCA TCGA-AN-A04D C1QTNF9B SNP Silent 13 24465799 G A 34 49 BRCA TCGA-AN-A04D C1QTNF9B-AS1 SNP Missense_Mutation 13 24895535 C T 28 48 BRCA TCGA-AN-A04D USPL1 SNP Missense_Mutation 13 31221139 G T 47 82 BRCA TCGA-AN-A04D CACNA1H SNP Silent 16 1265025 C G 32 52 BRCA TCGA-AN-A04D GNPTG SNP Missense_Mutation 16 1412250 C G 30 78 BRCA TCGA-AN-A04D ABCC12 SNP Missense_Mutation 16 48180286 C T 23 42 BRCA TCGA-AN-A04D KATNB1 SNP Splice_Site 16 57775730 G A 44 96 BRCA TCGA-AN-A04D RNF43 DEL Frame_Shift_Del 17 56435586 GGGATCCCCTTTA - 43 58 BRCA TCGA-AN-A04D ITGB4 SNP Missense_Mutation 17 73738675 T A 51 71 BRCA TCGA-AN-A04D ENPP7 SNP Missense_Mutation 17 77705071 T C 51 76 BRCA TCGA-AN-A04D DLGAP1 SNP Missense_Mutation 18 3534227 T G 54 93 BRCA TCGA-AN-A04D MAPK4 SNP Missense_Mutation 18 48255592 G T 44 94 BRCA TCGA-AN-A04D AKAP8 SNP Missense_Mutation 19 15472955 G C 44 69 BRCA TCGA-AN-A04D SUGP1 SNP Nonsense_Mutation 19 19414553 G C 48 82 BRCA TCGA-AN-A04D SUGP1 DEL Frame_Shift_Del 19 19414555 A - 15 61 BRCA TCGA-AN-A04D CCNE1 SNP Silent 19 30313495 C T 17 79 BRCA TCGA-AN-A04D SBSN SNP Missense_Mutation 19 36018958 C T 22 63 BRCA TCGA-AN-A04D ZNF841 SNP Nonsense_Mutation 19 52568485 T A 63 64 BRCA TCGA-AN-A04D VN1R2 SNP Missense_Mutation 19 53762388 A G 15 30 BRCA TCGA-AN-A04D ENSG00000229292 SNP Missense_Mutation 19 56284202 G A 37 51 BRCA TCGA-AN-A04D CAPS DEL In_Frame_Del 19 5914711 GCG - 34 49 BRCA TCGA-AN-A04D MUC16 SNP Missense_Mutation 19 9065209 C T 28 47 BRCA TCGA-AN-A04D MBD5 SNP Silent 2 149247300 T C 52 51 BRCA TCGA-AN-A04D TTN SNP Missense_Mutation 2 179576811 G A 40 60 BRCA TCGA-AN-A04D TTN SNP Silent 2 179588692 G C 33 59 BRCA TCGA-AN-A04D ATAD2B SNP Nonsense_Mutation 2 24046432 A T 6 55 BRCA TCGA-AN-A04D FAM98A SNP Missense_Mutation 2 33810243 C G 30 98 BRCA TCGA-AN-A04D TMEM131 SNP Missense_Mutation 2 98428967 C G 17 62 BRCA TCGA-AN-A04D SLC35C2 INS In_Frame_Ins 20 44983581 - GCA 51 57 BRCA TCGA-AN-A04D LSM14B SNP Missense_Mutation 20 60708435 G C 39 67 BRCA TCGA-AN-A04D KRTAP24-1 DEL In_Frame_Del 21 31655047 TGCTTCACCGTAGGA - 59 39 BRCA TCGA-AN-A04D LCA5L SNP Missense_Mutation 21 40794925 C A 30 84 BRCA TCGA-AN-A04D KRTAP10-11 SNP Missense_Mutation 21 46066670 T G 55 55 BRCA TCGA-AN-A04D TCN2 SNP Missense_Mutation 22 31019054 C A 17 61 BRCA TCGA-AN-A04D TCEAL5 SNP Missense_Mutation 23 102528976 T A 64 52 BRCA TCGA-AN-A04D IL1RAPL2 SNP Silent 23 104961445 G A 36 54 BRCA TCGA-AN-A04D VAMP7 SNP Missense_Mutation 23 155169387 G T 34 77 BRCA TCGA-AN-A04D UBA1 SNP Silent 23 47070446 G A 47 79 BRCA TCGA-AN-A04D MAGED2 SNP Silent 23 54841815 C T 31 36 BRCA TCGA-AN-A04D WDR52 SNP Missense_Mutation 3 113146069 C A 20 52 BRCA TCGA-AN-A04D ITGB5 SNP Silent 3 124567323 C G 17 54 BRCA TCGA-AN-A04D MYNN SNP Missense_Mutation 3 169500356 C T 26 100 BRCA TCGA-AN-A04D PHC3 SNP Missense_Mutation 3 169854406 G C 34 71 BRCA TCGA-AN-A04D MFI2 SNP Silent 3 196748288 C A 21 59 BRCA TCGA-AN-A04D AZI2 SNP Missense_Mutation 3 28365652 G A 41 75 BRCA TCGA-AN-A04D COL7A1 SNP Missense_Mutation 3 48608296 G A 38 59 BRCA TCGA-AN-A04D C4orf17 SNP Missense_Mutation 4 100443690 A G 12 71 BRCA TCGA-AN-A04D LRBA SNP Missense_Mutation 4 151223890 C T 19 98 BRCA TCGA-AN-A04D GABRA4 SNP Silent 4 46973128 T C 56 52 BRCA TCGA-AN-A04D ACOX3 SNP Missense_Mutation 4 8416065 T G 52 84 BRCA TCGA-AN-A04D SNCAIP SNP Missense_Mutation 5 121780331 G T 39 86 BRCA TCGA-AN-A04D PCDHB2 SNP Missense_Mutation 5 140474886 A T 4 49 BRCA TCGA-AN-A04D MTMR12 DEL In_Frame_Del 5 32274199 CTG - 20 84 BRCA TCGA-AN-A04D KIAA0947 SNP Silent 5 5464610 G A 37 38 BRCA TCGA-AN-A04D ENSG00000213701 SNP Missense_Mutation 5 96392778 C T 20 66 BRCA TCGA-AN-A04D VNN2 SNP Missense_Mutation 6 133077134 C G 26 84 BRCA TCGA-AN-A04D TNXB SNP Silent 6 32011575 C T 23 30 BRCA TCGA-AN-A04D UHRF1BP1 SNP Missense_Mutation 6 34827338 C T 26 69 BRCA TCGA-AN-A04D DEFB112 SNP Missense_Mutation 6 50011348 A T 4 47 BRCA TCGA-AN-A04D ARPC1A SNP Silent 7 98946502 G T 37 28 BRCA TCGA-AN-A04D SLC30A8 SNP Missense_Mutation 8 118169971 G T 44 60 BRCA TCGA-AN-A04D KLHL38 SNP Missense_Mutation 8 124664078 C G 30 100 BRCA TCGA-AN-A04D SNTG1 DEL Frame_Shift_Del 8 51449212 ACGTTGAATATTTATCTTCCTTTCAGGAC - 14 28 BRCA TCGA-AN-A0AJ NUDT17 SNP Missense_Mutation 1 145587481 C T 23 56 BRCA TCGA-AN-A0AJ TPR SNP Silent 1 186303578 A T 7 51 BRCA TCGA-AN-A0AJ URB2 SNP Silent 1 229783409 C G 30 49 BRCA TCGA-AN-A0AJ RYR2 SNP Missense_Mutation 1 237837413 C A 32 66 BRCA TCGA-AN-A0AJ FMN2 SNP Missense_Mutation 1 240601396 C T 21 100 BRCA TCGA-AN-A0AJ RGS7 SNP Splice_Site 1 240990397 C A 18 86 BRCA TCGA-AN-A0AJ KCNK18 SNP Missense_Mutation 10 118969045 G C 36 54 BRCA TCGA-AN-A0AJ MCMBP SNP Missense_Mutation 10 121602080 G C 33 98 BRCA TCGA-AN-A0AJ FAM13C SNP Missense_Mutation 10 61112160 G A 39 56 BRCA TCGA-AN-A0AJ ZMIZ1 SNP Missense_Mutation 10 80961397 C G 32 94 BRCA TCGA-AN-A0AJ CDHR1 SNP Missense_Mutation 10 85956341 A G 15 71 BRCA TCGA-AN-A0AJ ABCC8 SNP Missense_Mutation 11 17464360 C T 27 100 BRCA TCGA-AN-A0AJ CCDC34 SNP Missense_Mutation 11 27384585 G A 42 55 BRCA TCGA-AN-A0AJ OR5D16 SNP Missense_Mutation 11 55607024 C T 30 46 BRCA TCGA-AN-A0AJ CCDC83 DEL In_Frame_Del 11 85593657 TGT - 51 35 BRCA TCGA-AN-A0AJ RFX4 SNP Missense_Mutation 12 107048049 C T 31 63 BRCA TCGA-AN-A0AJ ACAD10 SNP Missense_Mutation 12 112186135 C T 31 63 BRCA TCGA-AN-A0AJ KSR2 SNP Missense_Mutation 12 117922315 C T 30 87 BRCA TCGA-AN-A0AJ ITPR2 SNP Silent 12 26647218 C T 20 81 BRCA TCGA-AN-A0AJ FAM186B SNP Missense_Mutation 12 49993820 C T 18 44 BRCA TCGA-AN-A0AJ NR2C1 SNP Missense_Mutation 12 95456304 G C 33 57 BRCA TCGA-AN-A0AJ SERF2 SNP Missense_Mutation 15 44085898 C G 32 73 BRCA TCGA-AN-A0AJ PRTG SNP Missense_Mutation 15 55970187 C A 26 97 BRCA TCGA-AN-A0AJ ZNF609 SNP Missense_Mutation 15 64915059 C T 26 98 BRCA TCGA-AN-A0AJ PEAK1 SNP Silent 15 77425881 A G 6 48 BRCA TCGA-AN-A0AJ ST8SIA2 SNP Silent 15 92988112 C T 19 59 BRCA TCGA-AN-A0AJ ACSM2B SNP Silent 16 20554293 C T 28 50 BRCA TCGA-AN-A0AJ ATXN2L SNP Silent 16 28843677 C T 21 55 BRCA TCGA-AN-A0AJ SEZ6L2 SNP Missense_Mutation 16 29884898 C G 24 91 BRCA TCGA-AN-A0AJ DNAH9 SNP Missense_Mutation 17 11687759 C A 26 100 BRCA TCGA-AN-A0AJ SCARF1 SNP Missense_Mutation 17 1540034 C A 24 49 BRCA TCGA-AN-A0AJ TTC19 DEL In_Frame_Del 17 15929879 CTA - 28 97 BRCA TCGA-AN-A0AJ IKZF3 SNP Silent 17 37922577 C T 23 22 BRCA TCGA-AN-A0AJ ANKFY1 SNP Missense_Mutation 17 4085564 C G 30 99 BRCA TCGA-AN-A0AJ MRPS7 SNP Missense_Mutation 17 73261930 G A 40 89 BRCA TCGA-AN-A0AJ TP53 DEL Frame_Shift_Del 17 7579364 C - 18 58 BRCA TCGA-AN-A0AJ DSEL SNP Missense_Mutation 18 65180116 T G 52 92 BRCA TCGA-AN-A0AJ CABP5 SNP Missense_Mutation 19 48542565 C T 19 64 BRCA TCGA-AN-A0AJ MUC16 SNP Silent 19 9061493 C A 30 47 BRCA TCGA-AN-A0AJ IL1R2 SNP Silent 2 102644698 G A 40 47 BRCA TCGA-AN-A0AJ KCNJ3 SNP Silent 2 155555500 C T 32 61 BRCA TCGA-AN-A0AJ PMS1 SNP Missense_Mutation 2 190742124 T G 52 69 BRCA TCGA-AN-A0AJ COL6A3 SNP Missense_Mutation 2 238280902 G T 44 52 BRCA TCGA-AN-A0AJ EML4 SNP Nonsense_Mutation 2 42472824 A T 13 89 BRCA TCGA-AN-A0AJ PLEKHH2 SNP Silent 2 43919673 A G 4 58 BRCA TCGA-AN-A0AJ ALMS1 SNP Silent 2 73646388 G A 38 47 BRCA TCGA-AN-A0AJ CD93 SNP Missense_Mutation 20 23065350 C T 19 30 BRCA TCGA-AN-A0AJ PROCR SNP Missense_Mutation 20 33764038 C A 32 65 BRCA TCGA-AN-A0AJ ANGPT4 SNP Missense_Mutation 20 896809 C A 25 57 BRCA TCGA-AN-A0AJ MCM3AP SNP Missense_Mutation 21 47703566 C T 27 78 BRCA TCGA-AN-A0AJ FAM48B1 SNP Missense_Mutation 23 24383411 G T 33 48 BRCA TCGA-AN-A0AJ CYLC1 SNP Missense_Mutation 23 83128429 G T 46 38 BRCA TCGA-AN-A0AJ FLJ25363 SNP Missense_Mutation 3 109129032 G A 39 67 BRCA TCGA-AN-A0AJ DNAJC13 SNP Missense_Mutation 3 132193880 G C 33 100 BRCA TCGA-AN-A0AJ PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-AN-A0AJ TTC14 SNP Missense_Mutation 3 180327846 G A 36 65 BRCA TCGA-AN-A0AJ HRG SNP Missense_Mutation 3 186383974 C T 27 66 BRCA TCGA-AN-A0AJ RTP2 SNP Missense_Mutation 3 187416666 C T 23 72 BRCA TCGA-AN-A0AJ MYRIP SNP Splice_site 3 40231954 G C 35 62 BRCA TCGA-AN-A0AJ ZNF445 SNP Missense_Mutation 3 44496857 C T 27 62 BRCA TCGA-AN-A0AJ OR5H2 SNP Missense_Mutation 3 98002278 T G 61 68 BRCA TCGA-AN-A0AJ HADH SNP Missense_Mutation 4 108948850 C T 30 100 BRCA TCGA-AN-A0AJ CLCN3 SNP Silent 4 170610225 C T 23 48 BRCA TCGA-AN-A0AJ CDKN2AIP SNP Nonsense_Mutation 4 184367784 C G 29 82 BRCA TCGA-AN-A0AJ CDKN2AIP SNP Missense_Mutation 4 184367856 C T 29 68 BRCA TCGA-AN-A0AJ CDKN2AIP SNP Missense_Mutation 4 184367943 C T 29 82 BRCA TCGA-AN-A0AJ CEP135 SNP Missense_Mutation 4 56819315 G C 33 99 BRCA TCGA-AN-A0AJ FRAS1 SNP Silent 4 79391188 C A 25 52 BRCA TCGA-AN-A0AJ SEC24A DEL Frame_Shift_Del 5 134041046 T - 59 91 BRCA TCGA-AN-A0AJ PCDHB14 SNP Nonsense_Mutation 5 140604653 G T 41 54 BRCA TCGA-AN-A0AJ AFAP1L1 SNP Missense_Mutation 5 148702185 G A 38 80 BRCA TCGA-AN-A0AJ LARP1 DEL Frame_Shift_Del 5 154169889 CT - 20 54 BRCA TCGA-AN-A0AJ PDE4D SNP Missense_Mutation 5 58271593 G A 40 97 BRCA TCGA-AN-A0AJ DSE SNP Silent 6 116756906 T C 59 66 BRCA TCGA-AN-A0AJ THEMIS SNP Missense_Mutation 6 128222041 C G 29 59 BRCA TCGA-AN-A0AJ ABCF1 SNP Missense_Mutation 6 30558114 C T 32 95 BRCA TCGA-AN-A0AJ LRRC73 SNP Missense_Mutation 6 43476519 G A 42 91 BRCA TCGA-AN-A0AJ ANKRD6 SNP Missense_Mutation 6 90276733 G A 38 84 BRCA TCGA-AN-A0AJ RELN SNP Missense_Mutation 7 103141338 A C 11 86 BRCA TCGA-AN-A0AJ PPP1R3A SNP Silent 7 113519206 A G 16 53 BRCA TCGA-AN-A0AJ ZNF498 DEL Frame_Shift_Del 7 99227257 CA - 21 67 BRCA TCGA-AN-A0AJ ZNF498 SNP Missense_Mutation 7 99227260 C G 24 74 BRCA TCGA-AN-A0AJ PXDNL SNP Nonsense_Mutation 8 52370199 G A 37 65 BRCA TCGA-AN-A0AJ RAD54B SNP Missense_Mutation 8 95423537 G A 37 49 BRCA TCGA-AN-A0AJ CCNE2 SNP Missense_Mutation 8 95906439 C T 31 79 BRCA TCGA-AN-A0AJ PAPPA SNP Missense_Mutation 9 119144714 G A 37 100 BRCA TCGA-AN-A0AJ NEK6 SNP Silent 9 127083782 C T 31 46 BRCA TCGA-AN-A0AJ TSC1 SNP Missense_Mutation 9 135771828 G A 37 84 BRCA TCGA-AN-A0AJ CACNA1B SNP Silent 9 140953542 A T 6 28 BRCA TCGA-AN-A0AJ FREM1 SNP Missense_Mutation 9 14824844 C A 22 56 BRCA TCGA-AN-A0AJ TOPORS SNP Missense_Mutation 9 32544087 C G 29 56 BRCA TCGA-AN-A0AL MIIP SNP Silent 1 12081867 G A 46 50 BRCA TCGA-AN-A0AL TCHH SNP Missense_Mutation 1 152084837 G T 34 69 BRCA TCGA-AN-A0AL HRNR SNP Nonsense_Mutation 1 152185557 G A 45 37 BRCA TCGA-AN-A0AL GPA33 SNP Missense_Mutation 1 167042712 T C 62 34 BRCA TCGA-AN-A0AL SELE SNP Missense_Mutation 1 169702097 G C 41 80 BRCA TCGA-AN-A0AL NCF2 SNP Missense_Mutation 1 183556064 A C 3 80 BRCA TCGA-AN-A0AL RGS1 SNP Missense_Mutation 1 192548335 T G 63 51 BRCA TCGA-AN-A0AL KCNT2 SNP Nonsense_Mutation 1 196227573 C A 32 96 BRCA TCGA-AN-A0AL USP1 SNP Missense_Mutation 1 62910521 A G 1 63 BRCA TCGA-AN-A0AL HSPA12A SNP Splice_Site 10 118439273 C T 24 99 BRCA TCGA-AN-A0AL MYPN DEL Frame_Shift_Del 10 69966541 CAACAGGGTATGCCTGCCTT - 17 86 BRCA TCGA-AN-A0AL DNA2 SNP Missense_Mutation 10 70231738 C T 18 43 BRCA TCGA-AN-A0AL OR52K2 SNP Missense_Mutation 11 4471319 C G 32 52 BRCA TCGA-AN-A0AL OR4X1 SNP Silent 11 48286093 C T 20 49 BRCA TCGA-AN-A0AL SF1 SNP Missense_Mutation 11 64536769 G C 44 60 BRCA TCGA-AN-A0AL SNX32 SNP Missense_Mutation 11 65617722 G C 33 52 BRCA TCGA-AN-A0AL PACS1 SNP Missense_Mutation 11 65998376 A T 7 73 BRCA TCGA-AN-A0AL FAT3 SNP Missense_Mutation 11 92623767 C T 19 66 BRCA TCGA-AN-A0AL KIAA1551 SNP Nonsense_Mutation 12 32137221 C G 29 69 BRCA TCGA-AN-A0AL TROAP SNP Missense_Mutation 12 49717812 C T 26 53 BRCA TCGA-AN-A0AL XPOT SNP Missense_Mutation 12 64815088 G C 47 85 BRCA TCGA-AN-A0AL USPL1 DEL Splice_site 13 31216765 GTGATATGGAAAGCCCT - 44 82 BRCA TCGA-AN-A0AL BAZ1A SNP Missense_Mutation 14 35243682 C G 29 73 BRCA TCGA-AN-A0AL PLEKHG3 SNP Missense_Mutation 14 65207860 A G 11 61 BRCA TCGA-AN-A0AL NRXN3 SNP Nonsense_Mutation 14 79423678 T G 61 93 BRCA TCGA-AN-A0AL ASB2 SNP Silent 14 94420823 C T 23 52 BRCA TCGA-AN-A0AL SERPINA11 DEL In_Frame_Del 14 94914994 GCTGATGCCTGGGGGGTTGAGGCCCCT - 34 51 BRCA TCGA-AN-A0AL ASB7 SNP Missense_Mutation 15 101169774 A G 4 89 BRCA TCGA-AN-A0AL MAP1A SNP Missense_Mutation 15 43813802 C A 21 99 BRCA TCGA-AN-A0AL HERC1 SNP Missense_Mutation 15 64050494 A C 5 52 BRCA TCGA-AN-A0AL TRPV2 SNP Missense_Mutation 17 16326990 C A 26 56 BRCA TCGA-AN-A0AL CCDC144A SNP Missense_Mutation 17 16638380 C G 17 67 BRCA TCGA-AN-A0AL TSR1 SNP Missense_Mutation 17 2239717 G T 38 84 BRCA TCGA-AN-A0AL NF1 DEL In_Frame_Del 17 29496956 ATA - 12 75 BRCA TCGA-AN-A0AL NF1 DEL Frame_Shift_Del 17 29496963 AT - 4 62 BRCA TCGA-AN-A0AL WSCD1 SNP Missense_Mutation 17 6023829 G C 43 93 BRCA TCGA-AN-A0AL TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-AN-A0AL CCDC102B SNP Silent 18 66721311 G A 47 49 BRCA TCGA-AN-A0AL ZNF224 SNP Silent 19 44611903 C T 18 50 BRCA TCGA-AN-A0AL KIR3DL2 SNP Missense_Mutation 19 55363521 C T 32 60 BRCA TCGA-AN-A0AL NLRP11 SNP Missense_Mutation 19 56320649 T C 61 36 BRCA TCGA-AN-A0AL ACTL9 SNP Missense_Mutation 19 8808096 G T 42 67 BRCA TCGA-AN-A0AL TTN SNP Missense_Mutation 2 179640141 C A 21 100 BRCA TCGA-AN-A0AL ALS2CR11 SNP Missense_Mutation 2 202410298 G T 35 51 BRCA TCGA-AN-A0AL CYP26B1 SNP Missense_Mutation 2 72359509 G C 42 70 BRCA TCGA-AN-A0AL BPIFB4 SNP Missense_Mutation 20 31685561 G A 33 77 BRCA TCGA-AN-A0AL RBL1 SNP Silent 20 35651110 T C 61 44 BRCA TCGA-AN-A0AL FAM65C SNP Missense_Mutation 20 49221293 G T 34 53 BRCA TCGA-AN-A0AL MX2 DEL Frame_Shift_Del 21 42780107 CTCACTCAGGCGCGACA - 28 75 BRCA TCGA-AN-A0AL RFPL3 SNP Missense_Mutation 22 32756346 G A 37 47 BRCA TCGA-AN-A0AL RGAG1 SNP Missense_Mutation 23 109697417 C A 32 69 BRCA TCGA-AN-A0AL CFP SNP Missense_Mutation 23 47485756 C T 23 75 BRCA TCGA-AN-A0AL MAGEE1 SNP Missense_Mutation 23 75648610 T C 50 48 BRCA TCGA-AN-A0AL ABI3BP DEL Frame_Shift_Del 3 100497193 CTGGGTGGCAAGGGTGGGCGGCGAGTCC - 32 55 BRCA TCGA-AN-A0AL ABHD14A-ACY1 DEL Frame_Shift_Del 3 52023054 C - 26 72 BRCA TCGA-AN-A0AL NDNF SNP Missense_Mutation 4 121958353 G A 35 75 BRCA TCGA-AN-A0AL SLIT2 SNP Missense_Mutation 4 20598070 T C 58 91 BRCA TCGA-AN-A0AL AFF4 SNP Silent 5 132228739 C T 28 57 BRCA TCGA-AN-A0AL PCDHAC1 DEL Frame_Shift_Del 5 140306692 G - 34 58 BRCA TCGA-AN-A0AL PCDHGB4 SNP Nonsense_Mutation 5 140768682 G T 37 86 BRCA TCGA-AN-A0AL ITK SNP Silent 5 156635917 G A 35 59 BRCA TCGA-AN-A0AL CARD6 SNP Missense_Mutation 5 40843565 A G 11 55 BRCA TCGA-AN-A0AL AKD1 SNP Splice_site 6 109827530 C G 24 94 BRCA TCGA-AN-A0AL PTCHD4 SNP Silent 6 47847116 T C 54 49 BRCA TCGA-AN-A0AL MCM3 SNP Missense_Mutation 6 52129521 G T 46 53 BRCA TCGA-AN-A0AL KIAA1586 SNP Missense_Mutation 6 56919137 A C 8 56 BRCA TCGA-AN-A0AL COL19A1 SNP Missense_Mutation 6 70637830 A T 11 90 BRCA TCGA-AN-A0AL PTPRN2 SNP Missense_Mutation 7 157370811 C T 19 100 BRCA TCGA-AN-A0AL ENSG00000235517 SNP Missense_Mutation 8 125877563 T C 64 37 BRCA TCGA-AN-A0AL FZD3 SNP Missense_Mutation 8 28409124 C T 20 78 BRCA TCGA-AN-A0AL ALG2 SNP Missense_Mutation 9 101980329 G A 44 99 BRCA TCGA-AN-A0AL ORM1 DEL Frame_Shift_Del 9 117085806 CCTGCATGCG - 30 49 BRCA TCGA-AN-A0AL GOLGA1 SNP Missense_Mutation 9 127700866 C G 30 94 BRCA TCGA-AN-A0AL ODF2 SNP Missense_Mutation 9 131246284 A G 7 70 BRCA TCGA-AN-A0AM TNR SNP Missense_Mutation 1 175348868 C T 31 95 BRCA TCGA-AN-A0AM RBBP5 SNP Nonsense_Mutation 1 205069184 C T 21 100 BRCA TCGA-AN-A0AM NEBL SNP Missense_Mutation 10 21186081 T C 53 50 BRCA TCGA-AN-A0AM ANKRD26 SNP Silent 10 27326932 A G 8 53 BRCA TCGA-AN-A0AM GATA3 INS Frame_Shift_Ins 10 8111507 - G 51 47 BRCA TCGA-AN-A0AM DSCAML1 SNP Missense_Mutation 11 117374631 C A 26 96 BRCA TCGA-AN-A0AM CBL SNP Silent 11 119103160 G T 47 78 BRCA TCGA-AN-A0AM PRDM10 SNP Splice_site 11 129827805 C A 18 98 BRCA TCGA-AN-A0AM OR52K1 SNP Silent 11 4510538 G A 39 20 BRCA TCGA-AN-A0AM KIF21A SNP Silent 12 39764027 T C 50 55 BRCA TCGA-AN-A0AM MYO1A SNP Nonsense_Mutation 12 57431753 G A 38 67 BRCA TCGA-AN-A0AM TBK1 SNP Silent 12 64878170 C G 32 48 BRCA TCGA-AN-A0AM CATSPERB SNP Missense_Mutation 14 92047238 C G 32 39 BRCA TCGA-AN-A0AM TC2N SNP Silent 14 92249447 A T 3 50 BRCA TCGA-AN-A0AM PPIB INS Splice_Site 15 64454237 - A 61 61 BRCA TCGA-AN-A0AM RASGRF1 SNP Missense_Mutation 15 79298697 G A 39 92 BRCA TCGA-AN-A0AM FSD2 SNP Missense_Mutation 15 83455730 C A 26 70 BRCA TCGA-AN-A0AM IGF1R SNP Missense_Mutation 15 99440131 G T 43 100 BRCA TCGA-AN-A0AM TEKT5 SNP Missense_Mutation 16 10783833 A G 5 85 BRCA TCGA-AN-A0AM TSR1 SNP Missense_Mutation 17 2235542 C G 30 64 BRCA TCGA-AN-A0AM RNF135 SNP Missense_Mutation 17 29325889 G T 36 53 BRCA TCGA-AN-A0AM KIF2B SNP Missense_Mutation 17 51901125 T C 60 89 BRCA TCGA-AN-A0AM FAM20A SNP Missense_Mutation 17 66533795 T G 56 45 BRCA TCGA-AN-A0AM CYP4F12 SNP Missense_Mutation 19 15807003 C T 21 73 BRCA TCGA-AN-A0AM CYP4F12 SNP Missense_Mutation 19 15807308 C G 32 64 BRCA TCGA-AN-A0AM CYP4F12 SNP Missense_Mutation 19 15807835 C G 29 51 BRCA TCGA-AN-A0AM ZNF724P DEL Frame_Shift_Del 19 23406636 C - 29 44 BRCA TCGA-AN-A0AM CYP2A6 SNP Missense_Mutation 19 41351269 T G 58 82 BRCA TCGA-AN-A0AM SIGLEC8 SNP Missense_Mutation 19 51960729 C T 27 45 BRCA TCGA-AN-A0AM FUT3 SNP Missense_Mutation 19 5844460 G A 38 66 BRCA TCGA-AN-A0AM TTC7A SNP Missense_Mutation 2 47256405 C T 19 61 BRCA TCGA-AN-A0AM SSTR4 SNP Silent 20 23016933 C T 28 77 BRCA TCGA-AN-A0AM OGFR SNP Silent 20 61444629 A G 7 34 BRCA TCGA-AN-A0AM RNF113A SNP Missense_Mutation 23 119004955 T C 58 86 BRCA TCGA-AN-A0AM LOC644717 SNP Missense_Mutation 23 134814919 G T 41 53 BRCA TCGA-AN-A0AM CTPS2 SNP Missense_Mutation 23 16685675 C T 29 52 BRCA TCGA-AN-A0AM EPHB1 SNP Missense_Mutation 3 134644715 C T 27 85 BRCA TCGA-AN-A0AM PIK3CB SNP Missense_Mutation 3 138453537 A C 16 82 BRCA TCGA-AN-A0AM NR2C2 SNP Missense_Mutation 3 15064743 G T 39 86 BRCA TCGA-AN-A0AM MUC4 SNP Silent 3 195511668 G A 40 54 BRCA TCGA-AN-A0AM DNAH1 SNP Silent 3 52404636 G A 33 65 BRCA TCGA-AN-A0AM ROBO2 SNP Missense_Mutation 3 77684051 G A 37 80 BRCA TCGA-AN-A0AM NDST4 SNP Silent 4 115997884 T G 50 46 BRCA TCGA-AN-A0AM OTUD4 SNP Silent 4 146076764 G C 33 51 BRCA TCGA-AN-A0AM CCDC69 SNP Missense_Mutation 5 150565026 C T 19 61 BRCA TCGA-AN-A0AM ADAMTS16 SNP Missense_Mutation 5 5232546 G T 44 97 BRCA TCGA-AN-A0AM SCAF8 SNP Missense_Mutation 6 155154411 A T 12 80 BRCA TCGA-AN-A0AM ZNF76 SNP Silent 6 35260506 C T 27 48 BRCA TCGA-AN-A0AM MUC17 SNP Missense_Mutation 7 100676850 C T 24 54 BRCA TCGA-AN-A0AM PLOD3 SNP Missense_Mutation 7 100855927 G A 39 61 BRCA TCGA-AN-A0AM SLC35B4 SNP Missense_Mutation 7 133986554 C T 20 53 BRCA TCGA-AN-A0AM FBXL18 SNP Nonsense_Mutation 7 5540158 G T 45 58 BRCA TCGA-AN-A0AM RUNX1T1 SNP Missense_Mutation 8 93029469 A G 4 90 BRCA TCGA-AN-A0AM OR1L6 SNP Missense_Mutation 9 125512715 C A 21 57 BRCA TCGA-AN-A0AR LOC728989 SNP Silent 1 146494519 G A 48 48 BRCA TCGA-AN-A0AR PYGO2 SNP Missense_Mutation 1 154931383 C T 27 76 BRCA TCGA-AN-A0AR IGSF9 SNP Silent 1 159906244 G A 42 59 BRCA TCGA-AN-A0AR IGSF8 SNP Missense_Mutation 1 160062779 C T 22 59 BRCA TCGA-AN-A0AR DUSP27 SNP Missense_Mutation 1 167095371 G T 42 83 BRCA TCGA-AN-A0AR CFHR4 SNP Missense_Mutation 1 196879568 C A 20 42 BRCA TCGA-AN-A0AR NLRP3 SNP Missense_Mutation 1 247608079 C A 32 52 BRCA TCGA-AN-A0AR OSCP1 SNP Missense_Mutation 1 36883811 C G 29 70 BRCA TCGA-AN-A0AR MYCL1 SNP Missense_Mutation 1 40363211 T G 59 70 BRCA TCGA-AN-A0AR PRKAA2 DEL In_Frame_Del 1 57161777 CTGATGCATATGCTG - 24 70 BRCA TCGA-AN-A0AR FUBP1 SNP Missense_Mutation 1 78414864 C T 25 99 BRCA TCGA-AN-A0AR ELTD1 SNP Silent 1 79383583 A G 12 52 BRCA TCGA-AN-A0AR HPSE2 SNP Silent 10 100904059 A G 11 56 BRCA TCGA-AN-A0AR ENTPD7 SNP Missense_Mutation 10 101451204 G T 41 92 BRCA TCGA-AN-A0AR PSD DEL Splice_Site 10 104165080 CCCCCCGCAACTCGGCCACATACTCTT - 26 46 BRCA TCGA-AN-A0AR WBP1L SNP Missense_Mutation 10 104557756 G A 41 91 BRCA TCGA-AN-A0AR TRUB1 SNP Missense_Mutation 10 116710862 T A 52 73 BRCA TCGA-AN-A0AR MAP3K8 SNP Missense_Mutation 10 30728142 C G 30 86 BRCA TCGA-AN-A0AR ZNF487P SNP Missense_Mutation 10 43977890 G A 41 49 BRCA TCGA-AN-A0AR FBXO18 SNP Silent 10 5951233 C A 30 40 BRCA TCGA-AN-A0AR CCAR1 SNP Missense_Mutation 10 70531055 G C 35 62 BRCA TCGA-AN-A0AR ADK SNP Nonsense_Mutation 10 75960544 G T 43 97 BRCA TCGA-AN-A0AR TAF3 SNP Silent 10 8055756 G A 41 43 BRCA TCGA-AN-A0AR CPEB3 SNP Missense_Mutation 10 93952303 C G 24 99 BRCA TCGA-AN-A0AR DYNC2H1 SNP Missense_Mutation 11 103014002 G T 41 96 BRCA TCGA-AN-A0AR SLC6A5 SNP Missense_Mutation 11 20652251 T G 58 92 BRCA TCGA-AN-A0AR ANO5 DEL Frame_Shift_Del 11 22294380 CC - 30 100 BRCA TCGA-AN-A0AR OR52A1 SNP Missense_Mutation 11 5173461 G T 34 53 BRCA TCGA-AN-A0AR FAM111A DEL In_Frame_Del 11 58919851 ATG - 4 46 BRCA TCGA-AN-A0AR OR4D6 SNP Missense_Mutation 11 59224890 G T 47 54 BRCA TCGA-AN-A0AR SLC22A6 SNP Missense_Mutation 11 62747289 T A 60 66 BRCA TCGA-AN-A0AR NPAS4 SNP Nonsense_Mutation 11 66192385 C A 29 75 BRCA TCGA-AN-A0AR GRM5 SNP Missense_Mutation 11 88780577 G A 42 100 BRCA TCGA-AN-A0AR HEPHL1 SNP Missense_Mutation 11 93839282 A G 11 78 BRCA TCGA-AN-A0AR OAS2 SNP Silent 12 113440772 G C 47 35 BRCA TCGA-AN-A0AR KDM2B SNP Silent 12 121878934 G T 37 50 BRCA TCGA-AN-A0AR TMEM132B SNP Silent 12 125834179 C G 21 77 BRCA TCGA-AN-A0AR GALNT9 SNP Silent 12 132685675 G A 40 57 BRCA TCGA-AN-A0AR PLCZ1 SNP Silent 12 18852835 G C 40 81 BRCA TCGA-AN-A0AR PDE3A SNP Silent 12 20807084 G A 35 53 BRCA TCGA-AN-A0AR ABCC9 DEL Frame_Shift_Del 12 21981950 GTATCCGTCA - 48 96 BRCA TCGA-AN-A0AR ABCC9 SNP Missense_Mutation 12 22028614 G C 41 95 BRCA TCGA-AN-A0AR KDM5A SNP Missense_Mutation 12 493214 G T 33 66 BRCA TCGA-AN-A0AR TROAP SNP Missense_Mutation 12 49717740 G T 36 53 BRCA TCGA-AN-A0AR SP1 SNP Missense_Mutation 12 53776045 A G 4 86 BRCA TCGA-AN-A0AR B4GALNT3 SNP Missense_Mutation 12 661326 A T 10 74 BRCA TCGA-AN-A0AR TRHDE SNP Silent 12 73014965 T C 62 59 BRCA TCGA-AN-A0AR CD163L1 SNP Nonsense_Mutation 12 7556211 G T 45 71 BRCA TCGA-AN-A0AR GDF3 SNP Missense_Mutation 12 7842748 C T 23 50 BRCA TCGA-AN-A0AR TNFRSF19 SNP Missense_Mutation 13 24243187 A T 12 34 BRCA TCGA-AN-A0AR OR4E2 SNP Missense_Mutation 14 22133652 C T 27 97 BRCA TCGA-AN-A0AR RABGGTA SNP Missense_Mutation 14 24736910 T G 63 84 BRCA TCGA-AN-A0AR BMP4 SNP Missense_Mutation 14 54417573 T A 60 51 BRCA TCGA-AN-A0AR MLH3 DEL In_Frame_Del 14 75514596 CTAGATTCTTTTTTTTTCTCTTTCTCTGTCTGAGCA - 28 56 BRCA TCGA-AN-A0AR CXADRP2 SNP Missense_Mutation 15 22016434 C A 20 60 BRCA TCGA-AN-A0AR MAP1A SNP Missense_Mutation 15 43818728 G C 33 50 BRCA TCGA-AN-A0AR ABCC1 SNP Missense_Mutation 16 16146590 C G 22 82 BRCA TCGA-AN-A0AR C17orf53 SNP Missense_Mutation 17 42225520 G C 36 59 BRCA TCGA-AN-A0AR ABCA9 SNP Silent 17 67039671 C T 19 50 BRCA TCGA-AN-A0AR ACADVL SNP Missense_Mutation 17 7127320 C T 31 72 BRCA TCGA-AN-A0AR TP53 DEL Frame_Shift_Del 17 7578416 CCTC - 18 84 BRCA TCGA-AN-A0AR USP36 SNP Silent 17 76795831 A T 7 40 BRCA TCGA-AN-A0AR EPB41L3 SNP Missense_Mutation 18 5406867 T C 52 70 BRCA TCGA-AN-A0AR NR2C2AP SNP Missense_Mutation 19 19312778 G A 39 72 BRCA TCGA-AN-A0AR QPCTL SNP Missense_Mutation 19 46196806 G C 36 69 BRCA TCGA-AN-A0AR KIR2DS4 SNP Silent 19 55350924 A G 6 51 BRCA TCGA-AN-A0AR FUT3 SNP Missense_Mutation 19 5844141 G A 40 41 BRCA TCGA-AN-A0AR NCKAP5 SNP Missense_Mutation 2 133539679 T A 49 44 BRCA TCGA-AN-A0AR FASTKD1 SNP Missense_Mutation 2 170393757 G C 40 91 BRCA TCGA-AN-A0AR PPIG SNP Nonsense_Mutation 2 170487451 C T 23 66 BRCA TCGA-AN-A0AR ITGAV SNP Splice_Site 2 187540546 G T 33 85 BRCA TCGA-AN-A0AR TET3 SNP Missense_Mutation 2 74275189 G C 35 55 BRCA TCGA-AN-A0AR RGPD1 SNP Missense_Mutation 2 87211939 C G 32 80 BRCA TCGA-AN-A0AR RGPD2 SNP Missense_Mutation 2 88084626 G C 33 80 BRCA TCGA-AN-A0AR LPIN3 SNP Missense_Mutation 20 39980756 G A 35 50 BRCA TCGA-AN-A0AR TSHZ2 SNP Missense_Mutation 20 51872574 G T 36 87 BRCA TCGA-AN-A0AR SLC7A4 SNP Silent 22 21385205 C A 21 51 BRCA TCGA-AN-A0AR RNF185 SNP Missense_Mutation 22 31591482 G T 44 96 BRCA TCGA-AN-A0AR TXN2 SNP Silent 22 36872855 C G 21 58 BRCA TCGA-AN-A0AR SSTR3 SNP Silent 22 37603630 C A 26 54 BRCA TCGA-AN-A0AR SOX10 SNP Silent 22 38369664 G A 42 68 BRCA TCGA-AN-A0AR OGT DEL In_Frame_Del 23 70783063 TCTTGATAG - 62 57 BRCA TCGA-AN-A0AR KNG1 DEL Frame_Shift_Del 3 186460074 AAATG - 5 72 BRCA TCGA-AN-A0AR LEPREL1 SNP Missense_Mutation 3 189711948 C A 22 96 BRCA TCGA-AN-A0AR CPN2 SNP Missense_Mutation 3 194062839 A T 7 77 BRCA TCGA-AN-A0AR XIRP1 SNP Missense_Mutation 3 39228482 T G 64 81 BRCA TCGA-AN-A0AR IL17RB SNP Missense_Mutation 3 53892827 C T 22 48 BRCA TCGA-AN-A0AR NR3C2 SNP Missense_Mutation 4 149075954 C G 32 76 BRCA TCGA-AN-A0AR TRIM60 SNP Silent 4 165961479 G A 41 56 BRCA TCGA-AN-A0AR SEL1L3 SNP Missense_Mutation 4 25769216 A G 16 81 BRCA TCGA-AN-A0AR RFC1 SNP Missense_Mutation 4 39304714 C A 26 99 BRCA TCGA-AN-A0AR MYO10 SNP Silent 5 16671552 C T 20 50 BRCA TCGA-AN-A0AR GZMA SNP Missense_Mutation 5 54398559 T C 62 61 BRCA TCGA-AN-A0AR TRIM23 SNP Missense_Mutation 5 64913932 C G 20 94 BRCA TCGA-AN-A0AR FASTKD3 SNP Missense_Mutation 5 7867856 T A 62 83 BRCA TCGA-AN-A0AR GPR98 SNP Missense_Mutation 5 89949195 C A 20 63 BRCA TCGA-AN-A0AR SERINC1 SNP Splice_Site 6 122792954 T C 52 72 BRCA TCGA-AN-A0AR MAP3K5 SNP Missense_Mutation 6 137019731 C G 29 62 BRCA TCGA-AN-A0AR STXBP5 SNP Splice_site 6 147655358 G C 47 96 BRCA TCGA-AN-A0AR SYNE1 SNP Splice_Site 6 152683459 C G 28 97 BRCA TCGA-AN-A0AR PRRT1 SNP Missense_Mutation 6 32119594 T C 62 68 BRCA TCGA-AN-A0AR TRERF1 SNP Missense_Mutation 6 42231282 G T 42 73 BRCA TCGA-AN-A0AR HTR1E DEL Frame_Shift_Del 6 87725628 TATCCCCTTGACTTTGATACTGATTCTC - 49 55 BRCA TCGA-AN-A0AR UBE2J1 SNP Splice_Site 6 90045151 C G 32 96 BRCA TCGA-AN-A0AR PPP1R3A SNP Missense_Mutation 7 113519707 T A 56 55 BRCA TCGA-AN-A0AR PPP1R3A SNP Missense_Mutation 7 113520011 G A 45 64 BRCA TCGA-AN-A0AR PTPRZ1 SNP Missense_Mutation 7 121659211 G T 44 94 BRCA TCGA-AN-A0AR SCRN1 SNP Missense_Mutation 7 30008626 C T 21 70 BRCA TCGA-AN-A0AR BMPER SNP Missense_Mutation 7 34097695 A C 5 87 BRCA TCGA-AN-A0AR ZNF716 SNP Nonsense_Mutation 7 57529139 C A 17 55 BRCA TCGA-AN-A0AR WBSCR17 SNP Missense_Mutation 7 71175821 T G 55 77 BRCA TCGA-AN-A0AR C1GALT1 SNP Splice_site 7 7274170 G A 35 72 BRCA TCGA-AN-A0AR CYP3A4 SNP Silent 7 99358487 G T 45 51 BRCA TCGA-AN-A0AR PABPC1 SNP Missense_Mutation 8 101717869 C G 29 71 BRCA TCGA-AN-A0AR COL14A1 SNP Silent 8 121170400 A G 13 44 BRCA TCGA-AN-A0AR DENND3 SNP Missense_Mutation 8 142146810 C G 22 48 BRCA TCGA-AN-A0AR UNC5D SNP Missense_Mutation 8 35608123 A T 4 54 BRCA TCGA-AN-A0AR KCNU1 SNP Missense_Mutation 8 36768470 A T 10 83 BRCA TCGA-AN-A0AR MCM4 SNP Silent 8 48883292 G A 33 60 BRCA TCGA-AN-A0AR VCPIP1 SNP Silent 8 67547576 T C 59 56 BRCA TCGA-AN-A0AR LRRCC1 SNP Missense_Mutation 8 86053669 G C 45 73 BRCA TCGA-AN-A0AR KCNS2 SNP Missense_Mutation 8 99441462 C T 27 73 BRCA TCGA-AN-A0AR ZNF189 DEL Frame_Shift_Del 9 104171093 AGTGTGGAAAA - 11 59 BRCA TCGA-AN-A0AR FKBP15 SNP Missense_Mutation 9 115983521 C T 17 76 BRCA TCGA-AN-A0AR CDK5RAP2 SNP Missense_Mutation 9 123280815 T G 51 51 BRCA TCGA-AN-A0AR DENND1A SNP Splice_Site 9 126371761 C G 20 81 BRCA TCGA-AN-A0AR FCN2 SNP Missense_Mutation 9 137774483 G C 33 47 BRCA TCGA-AN-A0AR TLN1 DEL Frame_Shift_Del 9 35698399 A - 14 90 BRCA TCGA-AN-A0AR ZCCHC6 SNP Silent 9 88932177 G C 45 50 BRCA TCGA-AN-A0AS CFH SNP Missense_Mutation 1 196648903 G A 40 30 BRCA TCGA-AN-A0AS LHX9 SNP Missense_Mutation 1 197890729 G A 35 100 BRCA TCGA-AN-A0AS OR14C36 SNP Missense_Mutation 1 248512969 C T 26 61 BRCA TCGA-AN-A0AS ADD3 SNP Missense_Mutation 10 111860581 G A 37 100 BRCA TCGA-AN-A0AS MADD SNP Splice_Site 11 47304168 G T 36 99 BRCA TCGA-AN-A0AS TIMELESS SNP Missense_Mutation 12 56815795 C A 30 94 BRCA TCGA-AN-A0AS CEP290 SNP Splice_Site 12 88514773 C A 18 95 BRCA TCGA-AN-A0AS SLC7A1 SNP Silent 13 30097477 G A 40 32 BRCA TCGA-AN-A0AS FREM2 SNP Missense_Mutation 13 39450219 G A 38 52 BRCA TCGA-AN-A0AS RYR3 SNP Silent 15 33927942 C T 31 32 BRCA TCGA-AN-A0AS SCAPER SNP Missense_Mutation 15 77025641 T C 54 65 BRCA TCGA-AN-A0AS CHD2 SNP Missense_Mutation 15 93522492 A G 9 93 BRCA TCGA-AN-A0AS KCNH4 SNP Missense_Mutation 17 40328183 C T 19 87 BRCA TCGA-AN-A0AS TP53 DEL In_Frame_Del 17 7579356 GAC - 33 49 BRCA TCGA-AN-A0AS ZNF536 SNP Silent 19 30934637 C T 23 28 BRCA TCGA-AN-A0AS TEAD2 SNP Missense_Mutation 19 49850509 C T 22 95 BRCA TCGA-AN-A0AS TTN SNP Nonsense_Mutation 2 179455719 G A 39 66 BRCA TCGA-AN-A0AS AOX1 SNP Missense_Mutation 2 201478612 G C 36 83 BRCA TCGA-AN-A0AS EPAS1 SNP Missense_Mutation 2 46588075 A G 5 55 BRCA TCGA-AN-A0AS TGFA SNP Missense_Mutation 2 70742012 T C 62 72 BRCA TCGA-AN-A0AS AGPAT3 SNP Missense_Mutation 21 45379705 G A 38 74 BRCA TCGA-AN-A0AS TTLL8 SNP Nonsense_Mutation 22 50480096 C A 29 65 BRCA TCGA-AN-A0AS COL4A5 SNP Silent 23 107829952 T C 58 54 BRCA TCGA-AN-A0AS FAM47B SNP Missense_Mutation 23 34961802 C T 23 71 BRCA TCGA-AN-A0AS AKAP4 SNP Missense_Mutation 23 49957446 C G 29 73 BRCA TCGA-AN-A0AS TAF1 SNP Missense_Mutation 23 70627430 C T 29 94 BRCA TCGA-AN-A0AS CITED1 SNP Missense_Mutation 23 71521748 A G 11 49 BRCA TCGA-AN-A0AS ZNF711 SNP Missense_Mutation 23 84525072 G A 48 67 BRCA TCGA-AN-A0AS GPR156 SNP Missense_Mutation 3 119886712 G A 38 49 BRCA TCGA-AN-A0AS DGKG SNP Silent 3 185993430 G A 40 41 BRCA TCGA-AN-A0AS TMEM44 SNP Missense_Mutation 3 194331653 C G 17 59 BRCA TCGA-AN-A0AS MAP3K1 INS Frame_Shift_Ins 5 56170931 - T 32 94 BRCA TCGA-AN-A0AS RAD17 SNP Missense_Mutation 5 68692264 C T 19 75 BRCA TCGA-AN-A0AS WRNIP1 SNP Silent 6 2785330 G A 45 85 BRCA TCGA-AN-A0AS SMARCD3 DEL Frame_Shift_Del 7 150936239 G - 47 94 BRCA TCGA-AN-A0AS BAZ1B SNP Missense_Mutation 7 72892315 C A 30 66 BRCA TCGA-AN-A0AS COL22A1 SNP Splice_Site 8 139675984 C A 24 62 BRCA TCGA-AN-A0AT CTTNBP2NL SNP Missense_Mutation 1 112999478 T A 50 88 BRCA TCGA-AN-A0AT HAO2 SNP Missense_Mutation 1 119927617 G A 45 61 BRCA TCGA-AN-A0AT PDE4DIP SNP Missense_Mutation 1 144921921 C T 26 66 BRCA TCGA-AN-A0AT IL6R SNP Missense_Mutation 1 154437823 C G 17 51 BRCA TCGA-AN-A0AT GON4L SNP Splice_Site 1 155753882 T G 55 74 BRCA TCGA-AN-A0AT SEMA4A SNP Missense_Mutation 1 156124481 C T 26 61 BRCA TCGA-AN-A0AT INSRR DEL Frame_Shift_Del 1 156814280 CTGT - 20 63 BRCA TCGA-AN-A0AT KIAA1804 SNP Silent 1 233515008 G A 46 57 BRCA TCGA-AN-A0AT FMN2 SNP Missense_Mutation 1 240497202 C A 24 88 BRCA TCGA-AN-A0AT TMEM57 SNP Missense_Mutation 1 25810708 G T 37 97 BRCA TCGA-AN-A0AT PUM1 SNP Silent 1 31439034 C T 28 89 BRCA TCGA-AN-A0AT RLF SNP Missense_Mutation 1 40654877 G C 36 74 BRCA TCGA-AN-A0AT DPH2 SNP Silent 1 44436295 T C 52 52 BRCA TCGA-AN-A0AT LRP8 SNP Missense_Mutation 1 53727829 A G 10 72 BRCA TCGA-AN-A0AT NFIA SNP Silent 1 61869882 G A 33 84 BRCA TCGA-AN-A0AT DNMBP SNP Missense_Mutation 10 101648689 C T 18 56 BRCA TCGA-AN-A0AT ANKRD30A SNP Missense_Mutation 10 37490246 A T 4 58 BRCA TCGA-AN-A0AT OGDHL SNP Missense_Mutation 10 50946058 A T 7 90 BRCA TCGA-AN-A0AT ADAMTS14 SNP Missense_Mutation 10 72498656 G T 41 98 BRCA TCGA-AN-A0AT CUL5 SNP Missense_Mutation 11 107968417 G A 36 98 BRCA TCGA-AN-A0AT TBRG1 SNP Nonsense_Mutation 11 124494848 G T 45 93 BRCA TCGA-AN-A0AT CALCA SNP Missense_Mutation 11 14989307 G C 48 63 BRCA TCGA-AN-A0AT FADS2 SNP Silent 11 61608167 T A 63 25 BRCA TCGA-AN-A0AT NAALADL1 SNP Silent 11 64825817 C T 32 55 BRCA TCGA-AN-A0AT NUMA1 SNP Missense_Mutation 11 71726884 C G 28 54 BRCA TCGA-AN-A0AT SLC17A8 SNP Missense_Mutation 12 100795569 G A 42 100 BRCA TCGA-AN-A0AT STAB2 SNP Missense_Mutation 12 104097010 A T 4 87 BRCA TCGA-AN-A0AT BRCA2 SNP Missense_Mutation 13 32936802 G C 33 100 BRCA TCGA-AN-A0AT OR4K2 SNP Missense_Mutation 14 20344945 G T 35 33 BRCA TCGA-AN-A0AT MIS18BP1 SNP Missense_Mutation 14 45711518 G C 33 50 BRCA TCGA-AN-A0AT ZFYVE1 DEL Frame_Shift_Del 14 73464532 CTGGGTGT - 28 53 BRCA TCGA-AN-A0AT CYFIP1 SNP Splice_site 15 22960793 G C 44 78 BRCA TCGA-AN-A0AT GATM SNP Missense_Mutation 15 45658366 C A 25 69 BRCA TCGA-AN-A0AT IGDCC3 SNP Missense_Mutation 15 65667575 A C 5 65 BRCA TCGA-AN-A0AT C15orf39 SNP Missense_Mutation 15 75500670 G A 41 54 BRCA TCGA-AN-A0AT VWA3A SNP Missense_Mutation 16 22134947 G C 33 57 BRCA TCGA-AN-A0AT ITGAD SNP Silent 16 31422067 C A 23 29 BRCA TCGA-AN-A0AT ZNF597 SNP Silent 16 3487525 C T 28 52 BRCA TCGA-AN-A0AT CREBBP INS Frame_Shift_Ins 16 3823824 - T 44 51 BRCA TCGA-AN-A0AT ADCY9 SNP Missense_Mutation 16 4057542 T A 50 62 BRCA TCGA-AN-A0AT TFAP4 SNP Missense_Mutation 16 4312598 T C 60 87 BRCA TCGA-AN-A0AT NKD1 SNP Missense_Mutation 16 50664794 G T 47 52 BRCA TCGA-AN-A0AT BBS2 SNP Silent 16 56553673 G A 47 77 BRCA TCGA-AN-A0AT CTCF SNP Nonsense_Mutation 16 67645308 G A 42 100 BRCA TCGA-AN-A0AT HYDIN SNP Missense_Mutation 16 71098655 G C 34 71 BRCA TCGA-AN-A0AT DHX40 SNP Missense_Mutation 17 57654510 G A 40 58 BRCA TCGA-AN-A0AT QRICH2 SNP Missense_Mutation 17 74288109 C G 18 48 BRCA TCGA-AN-A0AT MRPL12 SNP Silent 17 79674249 C T 27 31 BRCA TCGA-AN-A0AT SLC44A2 SNP Silent 19 10742750 C T 30 58 BRCA TCGA-AN-A0AT CEACAM21 SNP Missense_Mutation 19 42085765 G A 40 49 BRCA TCGA-AN-A0AT POU2F2 SNP Missense_Mutation 19 42626508 G C 48 54 BRCA TCGA-AN-A0AT KLK8 SNP Missense_Mutation 19 51503734 C A 26 89 BRCA TCGA-AN-A0AT ZNF613 SNP Missense_Mutation 19 52448266 G T 48 89 BRCA TCGA-AN-A0AT LILRB3 SNP Missense_Mutation 19 54746380 C T 19 52 BRCA TCGA-AN-A0AT KIR2DL3 SNP Missense_Mutation 19 55250982 C T 17 50 BRCA TCGA-AN-A0AT SAFB2 SNP Missense_Mutation 19 5590388 C T 30 64 BRCA TCGA-AN-A0AT ZIM3 SNP Missense_Mutation 19 57647274 T A 52 62 BRCA TCGA-AN-A0AT ZNF418 SNP Missense_Mutation 19 58438056 C T 19 42 BRCA TCGA-AN-A0AT TIMM44 SNP Splice_site 19 7998974 C A 24 93 BRCA TCGA-AN-A0AT BCL2L11 SNP Missense_Mutation 2 111881572 A G 11 57 BRCA TCGA-AN-A0AT CNTNAP5 SNP Missense_Mutation 2 125262113 G A 38 48 BRCA TCGA-AN-A0AT PROC SNP Missense_Mutation 2 128186352 A G 8 68 BRCA TCGA-AN-A0AT SCN7A SNP Missense_Mutation 2 167262191 C A 32 46 BRCA TCGA-AN-A0AT B3GALT1 SNP Missense_Mutation 2 168725803 G A 34 78 BRCA TCGA-AN-A0AT TTN SNP Missense_Mutation 2 179606022 T C 59 64 BRCA TCGA-AN-A0AT FZD7 SNP Missense_Mutation 2 202899638 G C 44 100 BRCA TCGA-AN-A0AT ERBB4 SNP Missense_Mutation 2 212248654 C T 29 85 BRCA TCGA-AN-A0AT LRRFIP1 SNP Missense_Mutation 2 238671248 A G 3 79 BRCA TCGA-AN-A0AT CAD SNP Missense_Mutation 2 27448725 C A 17 70 BRCA TCGA-AN-A0AT PREPL DEL Frame_Shift_Del 2 44548558 GTACAGGAATT - 40 43 BRCA TCGA-AN-A0AT ERLEC1 SNP Missense_Mutation 2 54035587 G T 46 99 BRCA TCGA-AN-A0AT SFXN5 SNP Missense_Mutation 2 73268023 T G 49 73 BRCA TCGA-AN-A0AT ALMS1 SNP Missense_Mutation 2 73747041 C T 17 52 BRCA TCGA-AN-A0AT DNAH6 SNP Splice_site 2 84785059 G T 35 81 BRCA TCGA-AN-A0AT SOGA1 SNP Missense_Mutation 20 35444226 A C 7 89 BRCA TCGA-AN-A0AT SIGLEC1 SNP Missense_Mutation 20 3686511 C T 19 37 BRCA TCGA-AN-A0AT C20orf195 SNP Silent 20 62187736 T C 51 30 BRCA TCGA-AN-A0AT MYO18B SNP Missense_Mutation 22 26422671 C G 22 85 BRCA TCGA-AN-A0AT KREMEN1 SNP Splice_site 22 29521252 T G 64 86 BRCA TCGA-AN-A0AT NPTXR SNP Silent 22 39218758 C G 29 82 BRCA TCGA-AN-A0AT TRMT2B SNP Missense_Mutation 23 100274386 G T 44 58 BRCA TCGA-AN-A0AT TEX13A SNP Missense_Mutation 23 104464663 T G 55 47 BRCA TCGA-AN-A0AT DOCK11 SNP Silent 23 117814519 A G 3 74 BRCA TCGA-AN-A0AT UPF3B SNP Missense_Mutation 23 118971940 C T 31 68 BRCA TCGA-AN-A0AT SLC25A14 SNP Silent 23 129483303 C T 31 52 BRCA TCGA-AN-A0AT IQSEC2 SNP Missense_Mutation 23 53268410 C G 19 82 BRCA TCGA-AN-A0AT PCCB SNP Missense_Mutation 3 136045650 T G 56 68 BRCA TCGA-AN-A0AT EXOC1 SNP Missense_Mutation 4 56744164 C T 28 98 BRCA TCGA-AN-A0AT PROL1 SNP Missense_Mutation 4 71275628 G A 34 51 BRCA TCGA-AN-A0AT PRKG2 SNP Missense_Mutation 4 82125781 C G 29 64 BRCA TCGA-AN-A0AT C5orf60 SNP Missense_Mutation 5 179069969 G C 41 54 BRCA TCGA-AN-A0AT VCAN SNP Missense_Mutation 5 82815833 A T 6 64 BRCA TCGA-AN-A0AT PRDM1 SNP Missense_Mutation 6 106553082 C G 28 56 BRCA TCGA-AN-A0AT AIM1 SNP Missense_Mutation 6 106967226 G C 42 86 BRCA TCGA-AN-A0AT NR2E1 SNP Missense_Mutation 6 108502082 G C 44 96 BRCA TCGA-AN-A0AT HIVEP2 SNP Missense_Mutation 6 143091275 C A 24 64 BRCA TCGA-AN-A0AT CCDC170 SNP Missense_Mutation 6 151907108 A G 11 63 BRCA TCGA-AN-A0AT SYNE1 SNP Missense_Mutation 6 152826437 T G 58 93 BRCA TCGA-AN-A0AT ACAT2 SNP Silent 6 160189602 C T 17 64 BRCA TCGA-AN-A0AT SMOC2 SNP Missense_Mutation 6 168910709 C A 29 93 BRCA TCGA-AN-A0AT VPS52 SNP Silent 6 33231848 A G 11 50 BRCA TCGA-AN-A0AT ABCC10 SNP Missense_Mutation 6 43412867 C A 22 56 BRCA TCGA-AN-A0AT PKHD1 SNP Silent 6 51890477 A G 16 41 BRCA TCGA-AN-A0AT DST SNP Missense_Mutation 6 56357785 A T 9 79 BRCA TCGA-AN-A0AT CHRM2 SNP Missense_Mutation 7 136700174 T A 56 92 BRCA TCGA-AN-A0AT DGKI SNP Missense_Mutation 7 137266623 C A 17 100 BRCA TCGA-AN-A0AT TRMT12 SNP Missense_Mutation 8 125464331 C G 18 55 BRCA TCGA-AN-A0AT TNFRSF10D DEL Frame_Shift_Del 8 23004508 TTTTA - 64 50 BRCA TCGA-AN-A0AT KCNT1 SNP Missense_Mutation 9 138660471 G T 35 53 BRCA TCGA-AN-A0AT CACNA1B SNP Missense_Mutation 9 140970316 C T 21 100 BRCA TCGA-AN-A0AT ARID3C SNP Missense_Mutation 9 34623463 G A 38 55 BRCA TCGA-AN-A0AT GNAQ SNP Missense_Mutation 9 80412549 C A 21 77 BRCA TCGA-AN-A0AT TLE4 SNP Missense_Mutation 9 82323054 G T 40 89 BRCA TCGA-AN-A0FD POGZ SNP Missense_Mutation 1 151378134 T C 50 88 BRCA TCGA-AN-A0FD CFH SNP Missense_Mutation 1 196684846 C G 20 41 BRCA TCGA-AN-A0FD RWDD3 SNP Nonsense_Mutation 1 95710162 A T 9 71 BRCA TCGA-AN-A0FD WAC DEL Frame_Shift_Del 10 28824639 GT - 36 73 BRCA TCGA-AN-A0FD ZEB1 SNP Missense_Mutation 10 31815819 C T 25 62 BRCA TCGA-AN-A0FD VDAC2 SNP Missense_Mutation 10 76982078 A T 2 79 BRCA TCGA-AN-A0FD GATA3 INS Frame_Shift_Ins 10 8115832 - G 23 86 BRCA TCGA-AN-A0FD MLL SNP Silent 11 118392845 C G 24 71 BRCA TCGA-AN-A0FD FAM111A SNP Silent 11 58920329 G A 34 47 BRCA TCGA-AN-A0FD NXF1 SNP Silent 11 62569083 G A 40 46 BRCA TCGA-AN-A0FD TAS2R8 SNP Missense_Mutation 12 10958729 A G 4 73 BRCA TCGA-AN-A0FD DBX2 SNP Missense_Mutation 12 45410172 C G 20 49 BRCA TCGA-AN-A0FD CEP290 DEL Frame_Shift_Del 12 88533308 C - 32 77 BRCA TCGA-AN-A0FD DGKE SNP Silent 17 54940026 C A 22 50 BRCA TCGA-AN-A0FD VMP1 SNP Silent 17 57842469 C T 32 71 BRCA TCGA-AN-A0FD ACE SNP Missense_Mutation 17 61560393 G A 36 60 BRCA TCGA-AN-A0FD RGS9 SNP Missense_Mutation 17 63221454 C G 30 90 BRCA TCGA-AN-A0FD MAP4K1 SNP Nonsense_Mutation 19 39088180 T A 54 72 BRCA TCGA-AN-A0FD DCAF17 SNP Missense_Mutation 2 172300067 C G 26 85 BRCA TCGA-AN-A0FD SMARCAL1 SNP Missense_Mutation 2 217303196 G T 46 64 BRCA TCGA-AN-A0FD TMEM214 SNP Missense_Mutation 2 27259373 T G 58 62 BRCA TCGA-AN-A0FD DOCK11 SNP Nonsense_Mutation 23 117788766 G T 47 83 BRCA TCGA-AN-A0FD SYAP1 SNP Silent 23 16737865 C T 25 54 BRCA TCGA-AN-A0FD TBL1X SNP Missense_Mutation 23 9661417 G T 41 96 BRCA TCGA-AN-A0FD ADPRH SNP Missense_Mutation 3 119301234 C A 26 53 BRCA TCGA-AN-A0FD PTPN23 SNP Silent 3 47450966 C T 18 79 BRCA TCGA-AN-A0FD SPRY1 SNP Silent 4 124323154 A G 15 49 BRCA TCGA-AN-A0FD PCDH18 SNP Missense_Mutation 4 138442550 C T 19 95 BRCA TCGA-AN-A0FD WDR17 SNP Missense_Mutation 4 177041218 A C 16 59 BRCA TCGA-AN-A0FD ZNF131 SNP Missense_Mutation 5 43161487 G A 44 96 BRCA TCGA-AN-A0FD HS3ST5 SNP Missense_Mutation 6 114379175 A G 4 93 BRCA TCGA-AN-A0FD MLLT4 SNP Missense_Mutation 6 168352254 C T 23 43 BRCA TCGA-AN-A0FD MRAP2 SNP Silent 6 84799080 C A 30 62 BRCA TCGA-AN-A0FD ABCA13 SNP Missense_Mutation 7 48443437 C T 23 69 BRCA TCGA-AN-A0FD ANK1 SNP Missense_Mutation 8 41530332 C T 19 68 BRCA TCGA-AN-A0FD ASPH INS In_Frame_Ins 8 62580816 - GTC 42 62 BRCA TCGA-AN-A0FF DRAXIN SNP Nonsense_Mutation 1 11766688 C T 23 59 BRCA TCGA-AN-A0FF NR1I3 SNP Nonsense_Mutation 1 161200619 G A 38 55 BRCA TCGA-AN-A0FF PPIH SNP Missense_Mutation 1 43124990 A G 16 45 BRCA TCGA-AN-A0FF PDCD11 SNP Missense_Mutation 10 105172930 C T 27 89 BRCA TCGA-AN-A0FF PRPF18 SNP Silent 10 13642249 G A 34 60 BRCA TCGA-AN-A0FF ARHGAP32 SNP Missense_Mutation 11 128846505 C T 19 100 BRCA TCGA-AN-A0FF OR8H1 SNP Missense_Mutation 11 56058466 T A 50 45 BRCA TCGA-AN-A0FF GOLGA3 DEL In_Frame_Del 12 133384597 TCC - 50 70 BRCA TCGA-AN-A0FF GOLGA3 DEL In_Frame_Del 12 133384601 CAGGAATCT - 25 45 BRCA TCGA-AN-A0FF DNAH2 SNP Missense_Mutation 17 7664193 T C 52 87 BRCA TCGA-AN-A0FF AKAP8L SNP Missense_Mutation 19 15491335 T C 57 61 BRCA TCGA-AN-A0FF ENSG00000213976 SNP Missense_Mutation 19 21838830 A C 8 39 BRCA TCGA-AN-A0FF MEGF8 SNP Missense_Mutation 19 42858174 A G 6 85 BRCA TCGA-AN-A0FF ZNF234 SNP Missense_Mutation 19 44660780 A G 16 51 BRCA TCGA-AN-A0FF TTN SNP Silent 2 179547548 C T 24 42 BRCA TCGA-AN-A0FF SPEG SNP Silent 2 220333726 C T 22 46 BRCA TCGA-AN-A0FF CYP24A1 SNP Missense_Mutation 20 52774114 A G 8 59 BRCA TCGA-AN-A0FF GNAS INS Frame_Shift_Ins 20 57470704 - A 33 51 BRCA TCGA-AN-A0FF MED14 SNP Missense_Mutation 23 40511087 G A 33 96 BRCA TCGA-AN-A0FF PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-AN-A0FF UBA6 SNP Missense_Mutation 4 68536192 G A 40 80 BRCA TCGA-AN-A0FF PCDHA7 SNP Silent 5 140214361 G A 39 21 BRCA TCGA-AN-A0FF HEATR7B2 SNP Splice_site 5 41057211 C T 24 75 BRCA TCGA-AN-A0FF SNAPC3 SNP Missense_Mutation 9 15444655 G A 43 86 BRCA TCGA-AN-A0FJ CD2 SNP Missense_Mutation 1 117297341 G C 45 56 BRCA TCGA-AN-A0FJ FAM46C SNP Missense_Mutation 1 118166379 G A 38 56 BRCA TCGA-AN-A0FJ FDPS SNP Silent 1 155290280 C T 32 84 BRCA TCGA-AN-A0FJ PFKFB2 SNP Missense_Mutation 1 207235325 C T 23 97 BRCA TCGA-AN-A0FJ TRAF3IP3 SNP Silent 1 209951472 A G 7 49 BRCA TCGA-AN-A0FJ KIF17 SNP Missense_Mutation 1 21014060 C T 21 53 BRCA TCGA-AN-A0FJ PRSS38 DNP Missense_Mutation 1 228005112 GC TT 46 44 BRCA TCGA-AN-A0FJ MYOM3 SNP Missense_Mutation 1 24384096 C T 19 53 BRCA TCGA-AN-A0FJ C1orf101 SNP Missense_Mutation 1 244798805 C T 17 50 BRCA TCGA-AN-A0FJ HDAC1 SNP Missense_Mutation 1 32797323 G T 44 97 BRCA TCGA-AN-A0FJ TRIT1 SNP Missense_Mutation 1 40307548 C G 32 84 BRCA TCGA-AN-A0FJ EIF2B3 SNP Silent 1 45323458 G A 45 60 BRCA TCGA-AN-A0FJ DOCK7 SNP Missense_Mutation 1 62970310 C G 32 65 BRCA TCGA-AN-A0FJ ROR1 SNP Missense_Mutation 1 64515374 A T 10 64 BRCA TCGA-AN-A0FJ DNAJC6 SNP Nonsense_Mutation 1 65855273 C A 19 48 BRCA TCGA-AN-A0FJ SLC44A5 SNP Silent 1 75693466 C T 30 50 BRCA TCGA-AN-A0FJ DNMBP SNP Missense_Mutation 10 101668763 G A 37 71 BRCA TCGA-AN-A0FJ ARMC3 SNP Silent 10 23326258 G A 40 39 BRCA TCGA-AN-A0FJ IPMK SNP Silent 10 59956131 C T 27 39 BRCA TCGA-AN-A0FJ COL13A1 SNP Missense_Mutation 10 71690163 G A 38 71 BRCA TCGA-AN-A0FJ ITIH5 SNP Missense_Mutation 10 7605295 G C 42 63 BRCA TCGA-AN-A0FJ MICALCL SNP Missense_Mutation 11 12315451 G T 36 46 BRCA TCGA-AN-A0FJ PRKCDBP SNP Missense_Mutation 11 6340957 G A 46 52 BRCA TCGA-AN-A0FJ SCUBE2 SNP Silent 11 9080884 T C 50 62 BRCA TCGA-AN-A0FJ MTMR2 SNP Missense_Mutation 11 95583906 G A 47 98 BRCA TCGA-AN-A0FJ CCDC53 SNP Missense_Mutation 12 102419768 C T 32 70 BRCA TCGA-AN-A0FJ AMIGO2 SNP Missense_Mutation 12 47471357 C T 28 51 BRCA TCGA-AN-A0FJ SP1 SNP Missense_Mutation 12 53775484 A T 4 70 BRCA TCGA-AN-A0FJ KIF5A SNP Missense_Mutation 12 57976912 G A 45 90 BRCA TCGA-AN-A0FJ MGAT4C SNP Missense_Mutation 12 86373693 G A 40 72 BRCA TCGA-AN-A0FJ MPHOSPH8 SNP Missense_Mutation 13 20220931 A T 10 52 BRCA TCGA-AN-A0FJ RNF219 SNP Missense_Mutation 13 79190455 C G 29 91 BRCA TCGA-AN-A0FJ FARP1 SNP Silent 13 99083458 C T 29 53 BRCA TCGA-AN-A0FJ BRF1 SNP Splice_site 14 105695250 G A 38 91 BRCA TCGA-AN-A0FJ KCNH5 SNP Missense_Mutation 14 63416872 C A 18 100 BRCA TCGA-AN-A0FJ PLA2G4F SNP Missense_Mutation 15 42442039 C T 30 66 BRCA TCGA-AN-A0FJ RFX7 SNP Missense_Mutation 15 56387080 G A 48 82 BRCA TCGA-AN-A0FJ ITGA11 SNP Missense_Mutation 15 68695306 C T 27 68 BRCA TCGA-AN-A0FJ C16orf91 SNP Silent 16 1470148 G C 45 44 BRCA TCGA-AN-A0FJ ANKS4B SNP Missense_Mutation 16 21261779 C A 20 57 BRCA TCGA-AN-A0FJ HEATR3 SNP Nonsense_Mutation 16 50112756 G T 45 55 BRCA TCGA-AN-A0FJ NOD2 SNP Missense_Mutation 16 50733855 C G 23 80 BRCA TCGA-AN-A0FJ OR1A2 SNP Missense_Mutation 17 3101670 C G 29 55 BRCA TCGA-AN-A0FJ TP53 INS Frame_Shift_Ins 17 7578460 - G 10 89 BRCA TCGA-AN-A0FJ TP53 SNP Silent 17 7578465 G T 43 62 BRCA TCGA-AN-A0FJ PPAN-P2RY11 SNP Missense_Mutation 19 10224406 C T 30 52 BRCA TCGA-AN-A0FJ ZGLP1 SNP Nonsense_Mutation 19 10415800 A T 6 50 BRCA TCGA-AN-A0FJ HAUS8 SNP Missense_Mutation 19 17169632 G C 36 74 BRCA TCGA-AN-A0FJ HAPLN4 SNP Missense_Mutation 19 19381108 C T 29 66 BRCA TCGA-AN-A0FJ SUGP1 SNP Missense_Mutation 19 19391074 C T 29 75 BRCA TCGA-AN-A0FJ PBX4 SNP Missense_Mutation 19 19675795 G A 40 86 BRCA TCGA-AN-A0FJ ZNF626 SNP Nonsense_Mutation 19 20807492 G C 48 51 BRCA TCGA-AN-A0FJ MYH14 SNP Missense_Mutation 19 50735280 C G 19 91 BRCA TCGA-AN-A0FJ ZNF578 SNP Silent 19 53007922 C T 29 53 BRCA TCGA-AN-A0FJ ZNF71 SNP Missense_Mutation 19 57133197 C T 19 76 BRCA TCGA-AN-A0FJ MUC16 SNP Missense_Mutation 19 9062300 C A 21 43 BRCA TCGA-AN-A0FJ POTEF SNP Missense_Mutation 2 130877864 A C 6 39 BRCA TCGA-AN-A0FJ THSD7B SNP Missense_Mutation 2 138000128 G A 35 64 BRCA TCGA-AN-A0FJ COBLL1 SNP Missense_Mutation 2 165551305 G C 33 78 BRCA TCGA-AN-A0FJ TTN SNP Missense_Mutation 2 179449464 C G 19 100 BRCA TCGA-AN-A0FJ NIF3L1 DEL Frame_Shift_Del 2 201757024 AGAGT - 7 57 BRCA TCGA-AN-A0FJ CREB1 SNP Silent 2 208434996 C T 21 52 BRCA TCGA-AN-A0FJ IRS1 SNP Missense_Mutation 2 227663163 C T 30 100 BRCA TCGA-AN-A0FJ COPS8 SNP Missense_Mutation 2 237994668 G A 37 97 BRCA TCGA-AN-A0FJ AGBL5 DEL Frame_Shift_Del 2 27293023 TCTA - 58 56 BRCA TCGA-AN-A0FJ EFEMP1 SNP Missense_Mutation 2 56145073 C T 29 98 BRCA TCGA-AN-A0FJ USP34 SNP Silent 2 61622132 T C 53 71 BRCA TCGA-AN-A0FJ EIF2AK3 SNP Splice_site 2 88858435 C A 24 62 BRCA TCGA-AN-A0FJ SLMO2 SNP Splice_site 20 57613687 T G 59 74 BRCA TCGA-AN-A0FJ DIP2A SNP Missense_Mutation 21 47904738 C G 29 70 BRCA TCGA-AN-A0FJ EFCAB6 SNP Missense_Mutation 22 43950819 G A 40 52 BRCA TCGA-AN-A0FJ RAB40A SNP Silent 23 102755232 G A 35 51 BRCA TCGA-AN-A0FJ GPR112 SNP Missense_Mutation 23 135429691 G A 33 51 BRCA TCGA-AN-A0FJ TRAPPC2 SNP Missense_Mutation 23 13734771 G C 45 69 BRCA TCGA-AN-A0FJ DYNLT3 SNP Missense_Mutation 23 37700304 C G 17 88 BRCA TCGA-AN-A0FJ PQBP1 SNP Silent 23 48760064 C T 19 50 BRCA TCGA-AN-A0FJ PHF8 SNP Missense_Mutation 23 54014274 C G 29 77 BRCA TCGA-AN-A0FJ NAP1L2 SNP Silent 23 72433777 C T 32 48 BRCA TCGA-AN-A0FJ OR5H1 SNP Missense_Mutation 3 97851825 C G 32 54 BRCA TCGA-AN-A0FJ CCDC110 SNP Splice_Site 4 186383863 C G 24 82 BRCA TCGA-AN-A0FJ MAN2B2 SNP Silent 4 6621704 C T 29 57 BRCA TCGA-AN-A0FJ AFF1 SNP Silent 4 87967342 G A 46 61 BRCA TCGA-AN-A0FJ DNAH5 SNP Silent 5 13865833 A G 1 43 BRCA TCGA-AN-A0FJ FBXL7 SNP Missense_Mutation 5 15936870 C T 23 74 BRCA TCGA-AN-A0FJ ATP10B DEL Frame_Shift_Del 5 160061486 TTGAGGGCTCGACA - 60 75 BRCA TCGA-AN-A0FJ NIPBL SNP Missense_Mutation 5 36985957 G T 36 76 BRCA TCGA-AN-A0FJ ECHDC1 SNP Silent 6 127611347 G T 43 50 BRCA TCGA-AN-A0FJ SNRPC SNP Missense_Mutation 6 34738134 T C 51 91 BRCA TCGA-AN-A0FJ DST SNP Missense_Mutation 6 56482819 C T 29 73 BRCA TCGA-AN-A0FJ EPHA7 SNP Missense_Mutation 6 93956553 G C 37 60 BRCA TCGA-AN-A0FJ FBXL4 SNP Missense_Mutation 6 99322245 A G 6 91 BRCA TCGA-AN-A0FJ WBSCR28 SNP Missense_Mutation 7 73279502 A G 14 21 BRCA TCGA-AN-A0FJ PON3 SNP Missense_Mutation 7 94993187 G A 45 96 BRCA TCGA-AN-A0FJ TRAPPC9 SNP Silent 8 141461044 C T 23 23 BRCA TCGA-AN-A0FJ LGI3 SNP Missense_Mutation 8 22006360 G C 48 57 BRCA TCGA-AN-A0FJ ASH2L SNP Missense_Mutation 8 37996363 G T 36 62 BRCA TCGA-AN-A0FJ PRKDC SNP Missense_Mutation 8 48765336 C A 24 59 BRCA TCGA-AN-A0FJ TTPA SNP Missense_Mutation 8 63978649 C G 22 96 BRCA TCGA-AN-A0FJ TUBBP5 SNP Silent 9 141071095 G A 40 41 BRCA TCGA-AN-A0FK SEMA4A DEL In_Frame_Del 1 156146568 TCCTCT - 58 74 BRCA TCGA-AN-A0FK MRPL24 SNP Silent 1 156708153 G A 37 45 BRCA TCGA-AN-A0FK CROCC SNP Missense_Mutation 1 17249200 G A 38 59 BRCA TCGA-AN-A0FK PGBD5 SNP Missense_Mutation 1 230468761 C T 27 42 BRCA TCGA-AN-A0FK GPATCH3 SNP Missense_Mutation 1 27219895 C A 17 56 BRCA TCGA-AN-A0FK KRT80 SNP Missense_Mutation 12 52579389 C T 27 41 BRCA TCGA-AN-A0FK DUOX2 SNP Splice_Site 15 45396252 C T 24 94 BRCA TCGA-AN-A0FK DOC2A SNP Silent 16 30018123 C T 23 21 BRCA TCGA-AN-A0FK CORO6 SNP Silent 17 27948434 G A 46 63 BRCA TCGA-AN-A0FK SOGA2 SNP Missense_Mutation 18 8796377 C T 24 76 BRCA TCGA-AN-A0FK DNASE2 SNP Missense_Mutation 19 12991929 C G 23 51 BRCA TCGA-AN-A0FK TRMT1 SNP Missense_Mutation 19 13218608 G A 40 90 BRCA TCGA-AN-A0FK BST2 SNP Missense_Mutation 19 17516273 C G 22 36 BRCA TCGA-AN-A0FK CREB3L3 SNP Missense_Mutation 19 4171690 C T 27 35 BRCA TCGA-AN-A0FK NLRP8 SNP Silent 19 56466066 C T 31 26 BRCA TCGA-AN-A0FK ELAVL1 SNP Missense_Mutation 19 8032461 G A 38 99 BRCA TCGA-AN-A0FK MUC16 SNP Silent 19 9061379 T C 51 46 BRCA TCGA-AN-A0FK PAX8 SNP Nonsense_Mutation 2 113993061 G A 46 90 BRCA TCGA-AN-A0FK SCN7A SNP Missense_Mutation 2 167298248 C A 20 50 BRCA TCGA-AN-A0FK TRIP12 SNP Missense_Mutation 2 230678717 C T 32 79 BRCA TCGA-AN-A0FK OTOF SNP Missense_Mutation 2 26706481 C T 27 99 BRCA TCGA-AN-A0FK PCNT SNP Silent 21 47819611 T C 61 22 BRCA TCGA-AN-A0FK TTLL12 SNP Nonsense_Mutation 22 43569738 G A 39 65 BRCA TCGA-AN-A0FK LOC100289317 SNP Silent 22 45724194 T C 51 42 BRCA TCGA-AN-A0FK LOC203510 SNP Missense_Mutation 23 111933403 G T 35 64 BRCA TCGA-AN-A0FK RBMXL3 SNP Missense_Mutation 23 114426666 G A 37 67 BRCA TCGA-AN-A0FK ARSE SNP Missense_Mutation 23 2853148 G A 43 60 BRCA TCGA-AN-A0FK AKAP4 SNP Silent 23 49957345 C T 23 45 BRCA TCGA-AN-A0FK YIPF6 SNP Silent 23 67718953 G A 38 45 BRCA TCGA-AN-A0FK DPPA2 SNP Silent 3 109031471 G A 40 48 BRCA TCGA-AN-A0FK KALRN SNP Silent 3 124380761 C T 32 100 BRCA TCGA-AN-A0FK QARS SNP Missense_Mutation 3 49135886 C G 30 70 BRCA TCGA-AN-A0FK RAD54L2 SNP Missense_Mutation 3 51664777 G A 45 82 BRCA TCGA-AN-A0FK DCLK2 SNP Silent 4 151153908 C T 20 56 BRCA TCGA-AN-A0FK WDR19 SNP Missense_Mutation 4 39247000 G T 44 88 BRCA TCGA-AN-A0FK KCTD16 SNP Silent 5 143853657 T C 64 65 BRCA TCGA-AN-A0FK TBP SNP Missense_Mutation 6 170871216 C G 22 84 BRCA TCGA-AN-A0FK TTBK1 SNP Missense_Mutation 6 43214504 G A 44 91 BRCA TCGA-AN-A0FK MEOX2 SNP Missense_Mutation 7 15666489 C T 24 100 BRCA TCGA-AN-A0FK HOXA1 SNP Missense_Mutation 7 27134949 C T 27 52 BRCA TCGA-AN-A0FK DLGAP2 SNP Missense_Mutation 8 1497608 C T 27 67 BRCA TCGA-AN-A0FK DEFA4 SNP Missense_Mutation 8 6794318 C T 19 52 BRCA TCGA-AN-A0FK SLC28A3 SNP Missense_Mutation 9 86894959 T C 49 92 BRCA TCGA-AN-A0FL FAM102B SNP Missense_Mutation 1 109171386 A G 16 63 BRCA TCGA-AN-A0FL MAGI3 SNP Missense_Mutation 1 114225698 A C 1 69 BRCA TCGA-AN-A0FL ITGA10 SNP Silent 1 145535834 C G 32 59 BRCA TCGA-AN-A0FL FCRL5 SNP Silent 1 157514745 A C 13 45 BRCA TCGA-AN-A0FL OR6K2 SNP Missense_Mutation 1 158669708 G T 36 57 BRCA TCGA-AN-A0FL ASTN1 SNP Missense_Mutation 1 177001903 C T 23 100 BRCA TCGA-AN-A0FL LMOD1 SNP Missense_Mutation 1 201869213 C G 30 95 BRCA TCGA-AN-A0FL C1orf74 SNP Silent 1 209956185 C G 23 17 BRCA TCGA-AN-A0FL INTS7 SNP Missense_Mutation 1 212126020 C T 30 84 BRCA TCGA-AN-A0FL PROX1 SNP Missense_Mutation 1 214171443 C T 19 100 BRCA TCGA-AN-A0FL DISP1 SNP Silent 1 223178036 C G 24 51 BRCA TCGA-AN-A0FL SIPA1L2 SNP Silent 1 232561450 C G 30 36 BRCA TCGA-AN-A0FL OR11L1 SNP Missense_Mutation 1 248005072 C A 17 39 BRCA TCGA-AN-A0FL MATN1 SNP Splice_site 1 31188155 G A 34 46 BRCA TCGA-AN-A0FL ARHGAP29 SNP Missense_Mutation 1 94654845 C G 24 48 BRCA TCGA-AN-A0FL FGFR2 SNP Missense_Mutation 10 123258034 A C 12 55 BRCA TCGA-AN-A0FL HSPA14 SNP Missense_Mutation 10 14913531 G A 47 90 BRCA TCGA-AN-A0FL DIP2C DEL Splice_site 10 461709 CTT - 24 99 BRCA TCGA-AN-A0FL CCAR1 SNP Missense_Mutation 10 70507310 G T 34 50 BRCA TCGA-AN-A0FL DNTT SNP Missense_Mutation 10 98064440 G T 43 70 BRCA TCGA-AN-A0FL OR10S1 SNP Silent 11 123848324 G A 33 57 BRCA TCGA-AN-A0FL NAV2 SNP Missense_Mutation 11 20122549 G C 38 100 BRCA TCGA-AN-A0FL AMBRA1 SNP Missense_Mutation 11 46419206 C G 28 57 BRCA TCGA-AN-A0FL CKAP5 SNP Missense_Mutation 11 46766095 G C 42 74 BRCA TCGA-AN-A0FL C11orf30 SNP Missense_Mutation 11 76207278 C G 29 57 BRCA TCGA-AN-A0FL RIMBP2 SNP Missense_Mutation 12 130884319 A C 3 89 BRCA TCGA-AN-A0FL FAR2 SNP Missense_Mutation 12 29464069 G T 46 87 BRCA TCGA-AN-A0FL C12orf40 SNP Missense_Mutation 12 40114937 G A 45 53 BRCA TCGA-AN-A0FL KDM5A SNP Missense_Mutation 12 427354 C G 30 98 BRCA TCGA-AN-A0FL ASIC1 SNP Missense_Mutation 12 50472232 C T 18 77 BRCA TCGA-AN-A0FL NCKAP1L SNP Missense_Mutation 12 54891635 G A 38 87 BRCA TCGA-AN-A0FL BEST3 SNP Missense_Mutation 12 70049341 C A 32 54 BRCA TCGA-AN-A0FL NEK5 SNP Missense_Mutation 13 52693482 T C 51 75 BRCA TCGA-AN-A0FL RBM26 SNP Missense_Mutation 13 79928636 G C 41 98 BRCA TCGA-AN-A0FL GPC5 SNP Missense_Mutation 13 92345621 G A 36 58 BRCA TCGA-AN-A0FL GPR132 SNP Missense_Mutation 14 105517621 T C 56 49 BRCA TCGA-AN-A0FL C14orf105 SNP Silent 14 57960233 G A 36 48 BRCA TCGA-AN-A0FL FAN1 DEL Frame_Shift_Del 15 31206139 TTCGTTGACCGACTCAATG - 64 46 BRCA TCGA-AN-A0FL SPTBN5 INS Frame_Shift_Ins 15 42173295 - T 48 53 BRCA TCGA-AN-A0FL SCG3 SNP Missense_Mutation 15 51975544 A G 9 63 BRCA TCGA-AN-A0FL RFX7 INS In_Frame_Ins 15 56387034 - GGGGTT 31 35 BRCA TCGA-AN-A0FL SIN3A SNP Missense_Mutation 15 75676645 C G 23 87 BRCA TCGA-AN-A0FL TMC3 SNP Missense_Mutation 15 81633785 C T 28 100 BRCA TCGA-AN-A0FL RRN3 SNP Splice_site 16 15173953 C G 30 90 BRCA TCGA-AN-A0FL C16orf62 SNP Nonsense_Mutation 16 19580756 C G 29 88 BRCA TCGA-AN-A0FL ARHGAP17 SNP Missense_Mutation 16 24950727 G A 41 63 BRCA TCGA-AN-A0FL CCNF SNP Missense_Mutation 16 2495537 G T 36 49 BRCA TCGA-AN-A0FL C16orf54 SNP Silent 16 29756060 G A 43 50 BRCA TCGA-AN-A0FL RGS11 SNP Missense_Mutation 16 324238 T G 54 54 BRCA TCGA-AN-A0FL LOC401847 SNP Missense_Mutation 16 33605723 C T 32 56 BRCA TCGA-AN-A0FL MARVELD3 DEL Frame_Shift_Del 16 71674756 GGCAGGC - 47 54 BRCA TCGA-AN-A0FL NPIPL2 SNP Silent 16 74425915 G A 40 49 BRCA TCGA-AN-A0FL LIG3 SNP Missense_Mutation 17 33318105 C G 21 72 BRCA TCGA-AN-A0FL ASPA SNP Nonsense_Mutation 17 3386852 T A 51 50 BRCA TCGA-AN-A0FL GPR179 SNP Missense_Mutation 17 36489841 G A 40 93 BRCA TCGA-AN-A0FL KRT28 SNP Missense_Mutation 17 38950240 G A 38 65 BRCA TCGA-AN-A0FL NAT9 SNP Missense_Mutation 17 72768136 G A 47 71 BRCA TCGA-AN-A0FL TRIM65 SNP Missense_Mutation 17 73888871 G C 34 74 BRCA TCGA-AN-A0FL TP53 SNP Splice_Site 17 7577610 T C 53 82 BRCA TCGA-AN-A0FL NDC80 SNP Splice_site 18 2585112 A G 12 53 BRCA TCGA-AN-A0FL ENOSF1 SNP Missense_Mutation 18 694282 G A 38 91 BRCA TCGA-AN-A0FL CACNA1A SNP Silent 19 13441098 G A 39 46 BRCA TCGA-AN-A0FL NR2F6 SNP Silent 19 17355841 C G 31 56 BRCA TCGA-AN-A0FL VSTM2B SNP Missense_Mutation 19 30054804 C T 28 62 BRCA TCGA-AN-A0FL ZNF536 SNP Missense_Mutation 19 30935520 G A 39 100 BRCA TCGA-AN-A0FL LSR SNP Missense_Mutation 19 35758359 T G 54 50 BRCA TCGA-AN-A0FL ARHGAP35 SNP Silent 19 47492817 G T 47 71 BRCA TCGA-AN-A0FL BCL2L12 SNP Nonsense_Mutation 19 50169138 G T 33 49 BRCA TCGA-AN-A0FL AFF3 SNP Missense_Mutation 2 100210682 G T 41 62 BRCA TCGA-AN-A0FL EDAR SNP Silent 2 109527386 C T 27 54 BRCA TCGA-AN-A0FL ROCK2 SNP Missense_Mutation 2 11334430 C T 20 69 BRCA TCGA-AN-A0FL KIF5C SNP Missense_Mutation 2 149868090 C A 22 100 BRCA TCGA-AN-A0FL SCN9A SNP Silent 2 167060936 C T 32 68 BRCA TCGA-AN-A0FL FAM49A SNP Nonsense_Mutation 2 16742265 C A 30 99 BRCA TCGA-AN-A0FL TTN SNP Missense_Mutation 2 179499339 C A 25 89 BRCA TCGA-AN-A0FL TTN SNP Missense_Mutation 2 179647781 T A 52 94 BRCA TCGA-AN-A0FL COL5A2 SNP Missense_Mutation 2 189904261 C A 26 100 BRCA TCGA-AN-A0FL DNAH7 SNP Splice_site 2 196709889 T A 62 53 BRCA TCGA-AN-A0FL MOB4 SNP Missense_Mutation 2 198405102 C G 29 100 BRCA TCGA-AN-A0FL ALS2CR8 SNP Silent 2 203826061 T A 58 57 BRCA TCGA-AN-A0FL ZDBF2 SNP Nonsense_Mutation 2 207172679 G T 45 50 BRCA TCGA-AN-A0FL CUL3 SNP Silent 2 225346622 G C 45 61 BRCA TCGA-AN-A0FL UGT1A3 SNP Missense_Mutation 2 234638190 C A 25 47 BRCA TCGA-AN-A0FL SH3BP4 INS Frame_Shift_Ins 2 235949579 - ATGCAAAGGAAGTG 1 59 BRCA TCGA-AN-A0FL TMC2 SNP Missense_Mutation 20 2552868 A G 1 75 BRCA TCGA-AN-A0FL RBL1 SNP Silent 20 35696493 A G 5 56 BRCA TCGA-AN-A0FL STK4 SNP Missense_Mutation 20 43703761 C T 27 62 BRCA TCGA-AN-A0FL CDH22 SNP Silent 20 44839113 G T 46 49 BRCA TCGA-AN-A0FL BRWD1 DEL Frame_Shift_Del 21 40568481 CAGTA - 29 55 BRCA TCGA-AN-A0FL MRPL40 SNP Missense_Mutation 22 19423260 G C 33 54 BRCA TCGA-AN-A0FL MMP11 SNP Missense_Mutation 22 24124660 G C 35 71 BRCA TCGA-AN-A0FL ATXN10 SNP Silent 22 46202962 G C 36 53 BRCA TCGA-AN-A0FL CLCN4 SNP Missense_Mutation 23 10176333 G C 42 59 BRCA TCGA-AN-A0FL KIAA1210 SNP Missense_Mutation 23 118220634 C A 28 54 BRCA TCGA-AN-A0FL XIAP SNP Silent 23 123040998 C G 29 51 BRCA TCGA-AN-A0FL FRMPD4 SNP Missense_Mutation 23 12736124 A G 11 57 BRCA TCGA-AN-A0FL AFF2 SNP Nonsense_Mutation 23 148037136 G T 45 91 BRCA TCGA-AN-A0FL MPP1 SNP Missense_Mutation 23 154009963 T C 57 65 BRCA TCGA-AN-A0FL EBP SNP Missense_Mutation 23 48382367 G T 46 70 BRCA TCGA-AN-A0FL PLP2 SNP Silent 23 49028371 G A 39 46 BRCA TCGA-AN-A0FL FOXP3 SNP Splice_Site 23 49114119 A G 14 70 BRCA TCGA-AN-A0FL FAAH2 SNP Silent 23 57337119 C T 30 54 BRCA TCGA-AN-A0FL PJA1 SNP Missense_Mutation 23 68381469 A G 8 60 BRCA TCGA-AN-A0FL PCDH11X SNP Missense_Mutation 23 91133182 G T 44 62 BRCA TCGA-AN-A0FL PCDH19 SNP Missense_Mutation 23 99662857 C G 19 77 BRCA TCGA-AN-A0FL ATG3 SNP Missense_Mutation 3 112256689 C G 29 99 BRCA TCGA-AN-A0FL PLXNA1 SNP Missense_Mutation 3 126707789 T A 55 86 BRCA TCGA-AN-A0FL COLQ SNP Missense_Mutation 3 15495408 T G 59 68 BRCA TCGA-AN-A0FL YEATS2 SNP Missense_Mutation 3 183479305 C G 32 75 BRCA TCGA-AN-A0FL TTC21A SNP Silent 3 39167781 A G 6 42 BRCA TCGA-AN-A0FL ZNF167 SNP Missense_Mutation 3 44607075 G T 43 57 BRCA TCGA-AN-A0FL FAM116A SNP Missense_Mutation 3 57619004 G C 45 70 BRCA TCGA-AN-A0FL ENSG00000179799 SNP Silent 3 75406392 G A 37 48 BRCA TCGA-AN-A0FL OGG1 SNP Missense_Mutation 3 9798825 G A 39 24 BRCA TCGA-AN-A0FL ANK2 SNP Missense_Mutation 4 114276056 A T 2 45 BRCA TCGA-AN-A0FL SYNPO2 SNP Silent 4 119810233 G T 43 58 BRCA TCGA-AN-A0FL PROM1 SNP Missense_Mutation 4 15991372 G C 41 64 BRCA TCGA-AN-A0FL SEPSECS SNP Missense_Mutation 4 25160722 C A 17 86 BRCA TCGA-AN-A0FL CORIN SNP Missense_Mutation 4 47647207 A C 14 53 BRCA TCGA-AN-A0FL SPATA18 SNP Silent 4 52943137 G A 38 42 BRCA TCGA-AN-A0FL EPHA5 SNP Missense_Mutation 4 66468004 C T 20 76 BRCA TCGA-AN-A0FL KIAA0232 SNP Silent 4 6865760 A G 4 44 BRCA TCGA-AN-A0FL SEC31A SNP Missense_Mutation 4 83802025 C G 29 97 BRCA TCGA-AN-A0FL HELQ SNP Missense_Mutation 4 84350883 T G 50 51 BRCA TCGA-AN-A0FL SPP1 SNP Missense_Mutation 4 88902730 A C 10 73 BRCA TCGA-AN-A0FL PCDHA1 SNP Silent 5 140168170 C G 21 59 BRCA TCGA-AN-A0FL PCDHB5 SNP Missense_Mutation 5 140516039 C A 17 56 BRCA TCGA-AN-A0FL RANBP3L SNP Nonsense_Mutation 5 36262047 G C 45 58 BRCA TCGA-AN-A0FL SEC63 SNP Silent 6 108246121 A C 5 69 BRCA TCGA-AN-A0FL SEC63 SNP Missense_Mutation 6 108250658 C T 23 83 BRCA TCGA-AN-A0FL ZBTB24 SNP Nonsense_Mutation 6 109787658 A C 13 70 BRCA TCGA-AN-A0FL ZUFSP SNP Missense_Mutation 6 116973262 G C 33 83 BRCA TCGA-AN-A0FL EPB41L2 SNP Silent 6 131220709 C T 27 59 BRCA TCGA-AN-A0FL SLC22A2 SNP Missense_Mutation 6 160670398 C T 23 51 BRCA TCGA-AN-A0FL PACSIN1 SNP Missense_Mutation 6 34499505 G A 38 81 BRCA TCGA-AN-A0FL PNPLA1 SNP Missense_Mutation 6 36275473 C G 18 43 BRCA TCGA-AN-A0FL XPO5 SNP Silent 6 43535089 C T 27 53 BRCA TCGA-AN-A0FL PLA2G7 SNP Missense_Mutation 6 46684756 A T 13 68 BRCA TCGA-AN-A0FL DEFB113 SNP Missense_Mutation 6 49936517 G A 34 43 BRCA TCGA-AN-A0FL LGSN SNP Missense_Mutation 6 63990398 G A 34 96 BRCA TCGA-AN-A0FL RIMS1 SNP Missense_Mutation 6 72596812 C G 18 75 BRCA TCGA-AN-A0FL CD109 SNP Missense_Mutation 6 74446225 A T 3 64 BRCA TCGA-AN-A0FL AGFG2 DEL In_Frame_Del 7 100161543 CCGCTGTTCCCCCCGCAGACC - 18 55 BRCA TCGA-AN-A0FL MUC17 SNP Missense_Mutation 7 100686047 T A 58 41 BRCA TCGA-AN-A0FL KCND2 SNP Silent 7 120387849 A G 11 54 BRCA TCGA-AN-A0FL PLXNA4 SNP Silent 7 131883300 G C 45 52 BRCA TCGA-AN-A0FL DFNA5 SNP Nonsense_Mutation 7 24738784 A T 5 76 BRCA TCGA-AN-A0FL OSBPL3 SNP Nonsense_Mutation 7 24911625 G A 45 99 BRCA TCGA-AN-A0FL NOD1 SNP Missense_Mutation 7 30469058 C A 32 59 BRCA TCGA-AN-A0FL FBXL18 SNP Missense_Mutation 7 5540818 G A 37 60 BRCA TCGA-AN-A0FL CYTH3 SNP Missense_Mutation 7 6210838 G T 41 100 BRCA TCGA-AN-A0FL GNAT3 SNP Nonsense_Mutation 7 80108225 C T 30 99 BRCA TCGA-AN-A0FL ZFPM2 SNP Silent 8 106815139 G A 35 51 BRCA TCGA-AN-A0FL MRPL13 SNP Missense_Mutation 8 121432115 T C 56 60 BRCA TCGA-AN-A0FL ADCY8 SNP Silent 8 131826440 G T 38 85 BRCA TCGA-AN-A0FL TG SNP Missense_Mutation 8 133898735 C T 30 89 BRCA TCGA-AN-A0FL C8orf31 SNP Nonsense_Mutation 8 144126093 G T 43 56 BRCA TCGA-AN-A0FL HEATR7A DEL Frame_Shift_Del 8 145223204 CCTCCACCCTGCTGGA - 26 57 BRCA TCGA-AN-A0FL CSMD1 SNP Missense_Mutation 8 3265726 G A 40 100 BRCA TCGA-AN-A0FL PXDNL SNP Missense_Mutation 8 52366148 C A 21 61 BRCA TCGA-AN-A0FL PENK SNP Silent 8 57358417 C T 19 33 BRCA TCGA-AN-A0FL ZFHX4 SNP Missense_Mutation 8 77617914 G A 45 88 BRCA TCGA-AN-A0FL CORO2A SNP Missense_Mutation 9 100895427 C G 32 97 BRCA TCGA-AN-A0FL LPAR1 SNP Missense_Mutation 9 113637769 G A 39 86 BRCA TCGA-AN-A0FL CCBL1 DEL Splice_site 9 131600646 CCTG - 22 95 BRCA TCGA-AN-A0FL C9orf78 SNP Splice_Site 9 132593148 A C 14 87 BRCA TCGA-AN-A0FL CER1 SNP Missense_Mutation 9 14722336 A G 11 49 BRCA TCGA-AN-A0FL FOCAD SNP Missense_Mutation 9 20789501 C T 27 42 BRCA TCGA-AN-A0FL FOCAD DEL Frame_Shift_Del 9 20990248 C - 26 50 BRCA TCGA-AN-A0FL FRMD3 SNP Missense_Mutation 9 85950510 T C 51 63 BRCA TCGA-AN-A0FN PTGFRN SNP Missense_Mutation 1 117492009 C T 31 60 BRCA TCGA-AN-A0FN POLR3GL SNP Missense_Mutation 1 145457994 C T 19 90 BRCA TCGA-AN-A0FN CSMD2 SNP Missense_Mutation 1 34123560 G A 39 100 BRCA TCGA-AN-A0FN SLC2A5 SNP Missense_Mutation 1 9101751 G A 36 43 BRCA TCGA-AN-A0FN SORL1 SNP Silent 11 121466411 G T 40 50 BRCA TCGA-AN-A0FN FGF9 SNP Missense_Mutation 13 22255226 G A 37 98 BRCA TCGA-AN-A0FN AKAP11 SNP Missense_Mutation 13 42876409 G A 36 73 BRCA TCGA-AN-A0FN ESRP2 SNP Missense_Mutation 16 68266395 G T 46 100 BRCA TCGA-AN-A0FN ZNF791 SNP Missense_Mutation 19 12739046 G A 37 51 BRCA TCGA-AN-A0FN RALGAPA2 SNP Silent 20 20517353 G A 36 69 BRCA TCGA-AN-A0FN LRRN4 SNP Nonsense_Mutation 20 6025283 G A 47 59 BRCA TCGA-AN-A0FN PPP1R3F INS Frame_Shift_Ins 23 49126982 - G 50 70 BRCA TCGA-AN-A0FN CPA2 SNP Missense_Mutation 7 129915037 C A 21 94 BRCA TCGA-AN-A0FN BRAF SNP Missense_Mutation 7 140439646 T C 64 91 BRCA TCGA-AN-A0FN MLL3 DEL Frame_Shift_Del 7 151874090 G - 47 49 BRCA TCGA-AN-A0FN ELN SNP Missense_Mutation 7 73452051 G C 35 65 BRCA TCGA-AN-A0FS MAN1A2 SNP Silent 1 117910860 C T 24 69 BRCA TCGA-AN-A0FS LPGAT1 INS Frame_Shift_Ins 1 211956599 - CT 10 53 BRCA TCGA-AN-A0FS HNRNPH3 SNP Splice_Site 10 70101734 G A 35 77 BRCA TCGA-AN-A0FS CD3G SNP Missense_Mutation 11 118221279 G A 46 78 BRCA TCGA-AN-A0FS TIRAP SNP Missense_Mutation 11 126162498 C T 19 28 BRCA TCGA-AN-A0FS IGSF22 SNP Silent 11 18735652 C T 27 35 BRCA TCGA-AN-A0FS SSH3 SNP Missense_Mutation 11 67076950 G A 41 81 BRCA TCGA-AN-A0FS TBC1D10C DEL Frame_Shift_Del 11 67174406 C - 26 64 BRCA TCGA-AN-A0FS TBX3 INS Frame_Shift_Ins 12 115115457 - T 44 98 BRCA TCGA-AN-A0FS PIWIL1 SNP Missense_Mutation 12 130856048 C G 30 98 BRCA TCGA-AN-A0FS AMN1 SNP Silent 12 31862280 G A 36 53 BRCA TCGA-AN-A0FS SDR9C7 SNP Splice_site 12 57323336 G A 38 61 BRCA TCGA-AN-A0FS PROX2 SNP Silent 14 75321979 G A 47 58 BRCA TCGA-AN-A0FS MAP1A SNP Nonsense_Mutation 15 43820168 C A 29 84 BRCA TCGA-AN-A0FS ADAM10 SNP Missense_Mutation 15 58974428 C G 29 97 BRCA TCGA-AN-A0FS DNAH3 SNP Missense_Mutation 16 21145740 G A 40 62 BRCA TCGA-AN-A0FS ARHGAP17 SNP Silent 16 24971256 C G 22 58 BRCA TCGA-AN-A0FS CTCF SNP Missense_Mutation 16 67645507 A G 13 92 BRCA TCGA-AN-A0FS CNTNAP4 SNP Missense_Mutation 16 76350228 T C 61 47 BRCA TCGA-AN-A0FS MYH13 SNP Silent 17 10233721 C T 32 61 BRCA TCGA-AN-A0FS CCL11 SNP Missense_Mutation 17 32614626 G A 41 45 BRCA TCGA-AN-A0FS KRTAP4-3 SNP Silent 17 39324182 C T 26 45 BRCA TCGA-AN-A0FS KRTAP4-3 SNP Silent 17 39324272 C T 26 46 BRCA TCGA-AN-A0FS LRRC46 DEL Frame_Shift_Del 17 45914435 G - 47 52 BRCA TCGA-AN-A0FS CACNA1G SNP Silent 17 48646555 T C 63 53 BRCA TCGA-AN-A0FS GAS7 SNP Missense_Mutation 17 9837520 G A 38 79 BRCA TCGA-AN-A0FS KRI1 SNP Missense_Mutation 19 10670359 G A 38 66 BRCA TCGA-AN-A0FS FAM71E2 DEL Frame_Shift_Del 19 55870662 G - 47 53 BRCA TCGA-AN-A0FS GPR155 SNP Splice_site 2 175335282 G C 33 58 BRCA TCGA-AN-A0FS IRS1 DEL Frame_Shift_Del 2 227661200 C - 26 62 BRCA TCGA-AN-A0FS HDAC4 SNP Missense_Mutation 2 240011772 C T 22 82 BRCA TCGA-AN-A0FS MPHOSPH10 SNP Missense_Mutation 2 71360269 G A 45 65 BRCA TCGA-AN-A0FS ANKRD36C DEL Frame_Shift_Del 2 96587542 T - 60 46 BRCA TCGA-AN-A0FS NINL SNP Missense_Mutation 20 25477324 C T 30 88 BRCA TCGA-AN-A0FS ZNF295 SNP Silent 21 43412963 C T 20 70 BRCA TCGA-AN-A0FS ATP2B3 SNP Silent 23 152822475 C T 31 42 BRCA TCGA-AN-A0FS TXLNG SNP Missense_Mutation 23 16838307 A T 12 91 BRCA TCGA-AN-A0FS NHS SNP Missense_Mutation 23 17744061 C T 19 83 BRCA TCGA-AN-A0FS GPR64 SNP Missense_Mutation 23 19028859 G T 44 55 BRCA TCGA-AN-A0FS SAT1 SNP Missense_Mutation 23 23801965 T C 60 87 BRCA TCGA-AN-A0FS PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-AN-A0FS EPHA3 SNP Silent 3 89391074 C T 30 45 BRCA TCGA-AN-A0FS SLC25A31 SNP Silent 4 128665852 T C 52 60 BRCA TCGA-AN-A0FS ODZ2 SNP Splice_site 5 167631625 C T 19 54 BRCA TCGA-AN-A0FS FGFR4 DEL Frame_Shift_Del 5 176524359 G - 47 53 BRCA TCGA-AN-A0FS VNN1 SNP Missense_Mutation 6 133004427 G A 47 61 BRCA TCGA-AN-A0FS MLL5 SNP Splice_Site 7 104714064 A G 15 83 BRCA TCGA-AN-A0FS CCDC136 SNP Missense_Mutation 7 128446752 G A 46 54 BRCA TCGA-AN-A0FS TRPV6 SNP Missense_Mutation 7 142575020 A C 7 85 BRCA TCGA-AN-A0FS COL14A1 SNP Silent 8 121209087 G A 44 100 BRCA TCGA-AN-A0FS MTMR7 SNP Missense_Mutation 8 17188758 C T 24 99 BRCA TCGA-AN-A0FS SVEP1 SNP Nonsense_Mutation 9 113169977 C A 29 60 BRCA TCGA-AN-A0FT AMPD1 SNP Splice_site 1 115226821 T C 55 59 BRCA TCGA-AN-A0FT BCAN SNP Missense_Mutation 1 156622303 C T 18 52 BRCA TCGA-AN-A0FT CD5L SNP Missense_Mutation 1 157805682 C G 29 50 BRCA TCGA-AN-A0FT PLA2G4A SNP Splice_Site 1 186880523 T A 59 74 BRCA TCGA-AN-A0FT CAMSAP2 SNP Missense_Mutation 1 200816774 T G 52 90 BRCA TCGA-AN-A0FT KIF21B SNP Silent 1 200973933 G A 38 63 BRCA TCGA-AN-A0FT NFASC INS Frame_Shift_Ins 1 204937936 - AT 33 65 BRCA TCGA-AN-A0FT USH2A SNP Missense_Mutation 1 216251659 G A 33 50 BRCA TCGA-AN-A0FT OBSCN SNP Missense_Mutation 1 228547542 G A 39 44 BRCA TCGA-AN-A0FT KIF26B SNP Silent 1 245850728 C T 19 53 BRCA TCGA-AN-A0FT PRKAA2 SNP Missense_Mutation 1 57169714 G A 40 66 BRCA TCGA-AN-A0FT LPPR4 SNP Silent 1 99771528 G A 38 16 BRCA TCGA-AN-A0FT CNNM2 SNP Missense_Mutation 10 104816684 G A 38 88 BRCA TCGA-AN-A0FT SORCS1 SNP Splice_Site 10 108339234 T G 56 90 BRCA TCGA-AN-A0FT EXOC6 INS Splice_Site 10 94688180 - T 44 96 BRCA TCGA-AN-A0FT CBL SNP Missense_Mutation 11 119103359 T C 56 93 BRCA TCGA-AN-A0FT TRAF6 SNP Missense_Mutation 11 36511852 C T 32 97 BRCA TCGA-AN-A0FT SMTNL1 SNP Missense_Mutation 11 57308982 C A 28 50 BRCA TCGA-AN-A0FT GANAB SNP Missense_Mutation 11 62396294 G A 35 51 BRCA TCGA-AN-A0FT SYTL2 SNP Missense_Mutation 11 85431982 G C 41 74 BRCA TCGA-AN-A0FT TRPV4 SNP Missense_Mutation 12 110230552 C T 19 83 BRCA TCGA-AN-A0FT NR4A1 SNP Silent 12 52448565 C G 32 51 BRCA TCGA-AN-A0FT TIMELESS SNP Missense_Mutation 12 56822802 C T 31 99 BRCA TCGA-AN-A0FT LRP1 SNP Silent 12 57595392 C T 23 16 BRCA TCGA-AN-A0FT MRPL51 SNP Silent 12 6602122 G T 37 45 BRCA TCGA-AN-A0FT PHLDA1 SNP Missense_Mutation 12 76424354 C G 23 74 BRCA TCGA-AN-A0FT A2ML1 SNP Silent 12 9000231 G A 38 16 BRCA TCGA-AN-A0FT FLT3 SNP Silent 13 28602382 G A 45 61 BRCA TCGA-AN-A0FT C15orf52 SNP Missense_Mutation 15 40627724 C G 30 45 BRCA TCGA-AN-A0FT ZFP106 SNP Nonsense_Mutation 15 42734373 G A 45 65 BRCA TCGA-AN-A0FT LEO1 SNP Missense_Mutation 15 52244140 C T 29 100 BRCA TCGA-AN-A0FT IREB2 SNP Missense_Mutation 15 78757626 G A 45 100 BRCA TCGA-AN-A0FT ST20 SNP Silent 15 80191306 C A 31 50 BRCA TCGA-AN-A0FT BNC1 SNP Silent 15 83926275 C T 19 39 BRCA TCGA-AN-A0FT CRAMP1L SNP Silent 16 1724028 C G 29 38 BRCA TCGA-AN-A0FT APOBR SNP Silent 16 28507283 G A 43 45 BRCA TCGA-AN-A0FT LOC100294345 SNP Silent 17 1577384 C T 22 49 BRCA TCGA-AN-A0FT DHRS13 SNP Missense_Mutation 17 27228017 C A 28 79 BRCA TCGA-AN-A0FT KRTAP4-16P SNP Missense_Mutation 17 39258148 T G 59 46 BRCA TCGA-AN-A0FT SSTR2 SNP Missense_Mutation 17 71165918 A G 11 71 BRCA TCGA-AN-A0FT TP53 SNP Missense_Mutation 17 7578271 T C 51 76 BRCA TCGA-AN-A0FT ABR SNP Missense_Mutation 17 953786 C A 20 52 BRCA TCGA-AN-A0FT COLEC12 SNP Nonsense_Mutation 18 357409 C A 22 98 BRCA TCGA-AN-A0FT OR10H2 SNP Missense_Mutation 19 15838899 G A 39 53 BRCA TCGA-AN-A0FT ZNF85 SNP Silent 19 21131734 C G 29 36 BRCA TCGA-AN-A0FT TLE6 SNP Missense_Mutation 19 2994071 C T 23 52 BRCA TCGA-AN-A0FT CYP2S1 SNP Silent 19 41704619 C T 19 40 BRCA TCGA-AN-A0FT PTPRS SNP Missense_Mutation 19 5212055 C T 27 89 BRCA TCGA-AN-A0FT ZNF324 SNP Missense_Mutation 19 58980577 T C 57 51 BRCA TCGA-AN-A0FT KANK3 SNP Silent 19 8399296 G C 45 55 BRCA TCGA-AN-A0FT IWS1 SNP Silent 2 128253598 G A 37 37 BRCA TCGA-AN-A0FT KIAA1715 SNP Missense_Mutation 2 176857117 T A 64 50 BRCA TCGA-AN-A0FT PLEKHM3 SNP Nonsense_Mutation 2 208841408 G A 40 65 BRCA TCGA-AN-A0FT CTDSP1 SNP Missense_Mutation 2 219266840 C T 22 63 BRCA TCGA-AN-A0FT LGALSL SNP Missense_Mutation 2 64683480 G A 37 82 BRCA TCGA-AN-A0FT DNAH6 SNP Missense_Mutation 2 84940260 G C 45 62 BRCA TCGA-AN-A0FT RIN2 SNP Missense_Mutation 20 19945639 C G 30 70 BRCA TCGA-AN-A0FT ERG SNP Silent 21 39817365 G A 45 60 BRCA TCGA-AN-A0FT KRTAP10-2 SNP Missense_Mutation 21 45970680 G C 44 56 BRCA TCGA-AN-A0FT KRTAP10-7 SNP Silent 21 46020575 C T 27 40 BRCA TCGA-AN-A0FT BCR SNP Missense_Mutation 22 23524047 G C 33 62 BRCA TCGA-AN-A0FT VGLL1 SNP Missense_Mutation 23 135630756 A T 8 50 BRCA TCGA-AN-A0FT DMD SNP Nonsense_Mutation 23 32364092 G A 46 70 BRCA TCGA-AN-A0FT SHROOM2 INS Frame_Shift_Ins 23 9864432 - C 42 48 BRCA TCGA-AN-A0FT ARHGEF26 SNP Missense_Mutation 3 153943651 C T 30 87 BRCA TCGA-AN-A0FT PLCH1 SNP Silent 3 155303908 C A 29 57 BRCA TCGA-AN-A0FT TTC14 SNP Missense_Mutation 3 180322642 G A 33 64 BRCA TCGA-AN-A0FT KCNH8 SNP Nonsense_Mutation 3 19575051 G A 41 73 BRCA TCGA-AN-A0FT PDS5A SNP Missense_Mutation 4 39924337 T C 51 93 BRCA TCGA-AN-A0FT SPARCL1 SNP Missense_Mutation 4 88414874 C T 29 72 BRCA TCGA-AN-A0FT TSLP SNP Missense_Mutation 5 110411704 C A 32 62 BRCA TCGA-AN-A0FT KCNN2 SNP Nonsense_Mutation 5 113740533 G A 41 100 BRCA TCGA-AN-A0FT TRPC7 SNP Missense_Mutation 5 135692897 C T 23 86 BRCA TCGA-AN-A0FT PCDHA9 SNP Missense_Mutation 5 140228577 C T 26 82 BRCA TCGA-AN-A0FT NHP2 SNP Missense_Mutation 5 177576773 A G 14 88 BRCA TCGA-AN-A0FT AHRR SNP Missense_Mutation 5 428000 C T 27 76 BRCA TCGA-AN-A0FT ADAMTS16 SNP Silent 5 5186343 C T 19 47 BRCA TCGA-AN-A0FT NEDD9 SNP Nonsense_Mutation 6 11188468 G A 46 80 BRCA TCGA-AN-A0FT HEY2 SNP Missense_Mutation 6 126080572 C T 30 84 BRCA TCGA-AN-A0FT ELOVL5 DEL Frame_Shift_Del 6 53139934 C - 25 100 BRCA TCGA-AN-A0FT C6orf165 SNP Silent 6 88170826 G A 37 39 BRCA TCGA-AN-A0FT AGFG2 SNP Missense_Mutation 7 100151824 G A 33 87 BRCA TCGA-AN-A0FT TRBC1 SNP Missense_Mutation 7 142423558 G A 45 52 BRCA TCGA-AN-A0FT GIMAP8 SNP Missense_Mutation 7 150171135 G A 37 51 BRCA TCGA-AN-A0FT DPP6 SNP Missense_Mutation 7 154172083 G T 33 71 BRCA TCGA-AN-A0FT BAIAP2L1 SNP Silent 7 97984400 G C 47 57 BRCA TCGA-AN-A0FT UBR5 SNP Missense_Mutation 8 103298762 T A 54 93 BRCA TCGA-AN-A0FT MOS SNP Nonsense_Mutation 8 57026280 G A 46 71 BRCA TCGA-AN-A0FT ZFHX4 SNP Missense_Mutation 8 77616630 G A 46 97 BRCA TCGA-AN-A0FT ATP6V0D2 SNP Missense_Mutation 8 87165053 G C 45 69 BRCA TCGA-AN-A0FT C9orf91 INS Frame_Shift_Ins 9 117405515 - C 54 45 BRCA TCGA-AN-A0FT CCDC171 SNP Missense_Mutation 9 15744698 C A 18 86 BRCA TCGA-AN-A0FT DDX58 SNP Silent 9 32481365 G C 43 10 BRCA TCGA-AN-A0FT DDX58 SNP Silent 9 32481395 G A 48 58 BRCA TCGA-AN-A0FV SLC6A17 SNP Missense_Mutation 1 110738234 G A 40 57 BRCA TCGA-AN-A0FV MAGI3 SNP Missense_Mutation 1 114226131 G A 37 50 BRCA TCGA-AN-A0FV KRTCAP2 SNP Silent 1 155145340 G C 33 38 BRCA TCGA-AN-A0FV USP21 SNP Missense_Mutation 1 161133349 G T 45 68 BRCA TCGA-AN-A0FV LOC100288921 SNP Missense_Mutation 1 17197929 G A 37 52 BRCA TCGA-AN-A0FV SERPINC1 DEL Frame_Shift_Del 1 173881074 AG - 15 90 BRCA TCGA-AN-A0FV HMCN1 SNP Missense_Mutation 1 185946924 C T 30 97 BRCA TCGA-AN-A0FV ZBTB41 SNP Silent 1 197169214 G A 40 50 BRCA TCGA-AN-A0FV LHX9 SNP Missense_Mutation 1 197889297 T C 61 89 BRCA TCGA-AN-A0FV IKBKE SNP Silent 1 206658371 C T 20 67 BRCA TCGA-AN-A0FV CR2 SNP Silent 1 207651345 G A 47 51 BRCA TCGA-AN-A0FV WDR26 SNP Missense_Mutation 1 224592164 C G 29 98 BRCA TCGA-AN-A0FV PGBD5 SNP Missense_Mutation 1 230492905 G A 40 70 BRCA TCGA-AN-A0FV RYR2 SNP Silent 1 237870517 C A 29 66 BRCA TCGA-AN-A0FV RYR2 SNP Missense_Mutation 1 237924301 C T 32 88 BRCA TCGA-AN-A0FV GBP6 SNP Missense_Mutation 1 89850894 A G 14 29 BRCA TCGA-AN-A0FV MGMT SNP Silent 10 131506231 G A 45 71 BRCA TCGA-AN-A0FV STAM SNP Missense_Mutation 10 17702520 G A 48 95 BRCA TCGA-AN-A0FV USP54 SNP Silent 10 75258501 A G 8 52 BRCA TCGA-AN-A0FV OR10G7 SNP Missense_Mutation 11 123909455 G C 41 53 BRCA TCGA-AN-A0FV OPCML SNP Splice_site 11 133402219 T C 50 76 BRCA TCGA-AN-A0FV OR8K1 SNP Silent 11 56114084 G A 45 50 BRCA TCGA-AN-A0FV MED13L DEL Frame_Shift_Del 12 116457650 TTCT - 56 44 BRCA TCGA-AN-A0FV SLC15A4 INS Frame_Shift_Ins 12 129293488 - A 21 100 BRCA TCGA-AN-A0FV ERBB3 SNP Missense_Mutation 12 56495592 A C 9 84 BRCA TCGA-AN-A0FV ARHGEF25 SNP Missense_Mutation 12 58009443 G A 41 72 BRCA TCGA-AN-A0FV ARHGEF25 SNP Missense_Mutation 12 58010139 G C 41 61 BRCA TCGA-AN-A0FV GPC6 SNP Missense_Mutation 13 94197641 A G 6 76 BRCA TCGA-AN-A0FV DHRS4L2 SNP Missense_Mutation 14 24470124 C T 21 81 BRCA TCGA-AN-A0FV SEC23A SNP Missense_Mutation 14 39532596 A T 8 63 BRCA TCGA-AN-A0FV RFX7 SNP Nonsense_Mutation 15 56386801 G C 45 98 BRCA TCGA-AN-A0FV GCNT3 SNP Silent 15 59910998 C T 29 54 BRCA TCGA-AN-A0FV RBBP6 SNP Missense_Mutation 16 24567161 G C 35 100 BRCA TCGA-AN-A0FV CNOT1 SNP Missense_Mutation 16 58617082 C G 29 100 BRCA TCGA-AN-A0FV B9D1 SNP Missense_Mutation 17 19246827 C A 21 52 BRCA TCGA-AN-A0FV FOXN1 SNP Missense_Mutation 17 26861358 G A 37 100 BRCA TCGA-AN-A0FV DHRS11 SNP Silent 17 34956183 G A 34 49 BRCA TCGA-AN-A0FV CDK12 SNP Silent 17 37618634 C A 31 61 BRCA TCGA-AN-A0FV PSMD3 SNP Silent 17 38140650 C G 29 54 BRCA TCGA-AN-A0FV CACNA1G SNP Missense_Mutation 17 48695611 C T 26 55 BRCA TCGA-AN-A0FV BZRAP1 SNP Silent 17 56395674 G A 41 54 BRCA TCGA-AN-A0FV CASKIN2 SNP Splice_site 17 73499334 C T 26 49 BRCA TCGA-AN-A0FV TP53 SNP Missense_Mutation 17 7577526 A G 11 74 BRCA TCGA-AN-A0FV ABR SNP Missense_Mutation 17 995066 C T 27 100 BRCA TCGA-AN-A0FV MC4R SNP Missense_Mutation 18 58038781 A C 15 74 BRCA TCGA-AN-A0FV ZNF844 SNP Missense_Mutation 19 12187501 G C 45 49 BRCA TCGA-AN-A0FV ATCAY SNP Missense_Mutation 19 3905527 T G 58 85 BRCA TCGA-AN-A0FV TMEM163 SNP Missense_Mutation 2 135470791 C G 26 73 BRCA TCGA-AN-A0FV PLCL1 SNP Silent 2 198948973 G A 45 54 BRCA TCGA-AN-A0FV FN1 SNP Silent 2 216271160 C T 27 48 BRCA TCGA-AN-A0FV COL6A3 SNP Missense_Mutation 2 238275816 C G 32 71 BRCA TCGA-AN-A0FV C2orf44 SNP Nonsense_Mutation 2 24261104 G A 45 65 BRCA TCGA-AN-A0FV CCDC88A DEL Frame_Shift_Del 2 55563838 CA - 29 51 BRCA TCGA-AN-A0FV PTPRT SNP Missense_Mutation 20 41420103 G C 33 100 BRCA TCGA-AN-A0FV PPDPF SNP Silent 20 62152893 C T 28 72 BRCA TCGA-AN-A0FV TOMM22 SNP Missense_Mutation 22 39079782 G A 41 92 BRCA TCGA-AN-A0FV TBC1D22A SNP Missense_Mutation 22 47393596 C T 23 76 BRCA TCGA-AN-A0FV EGFL6 SNP Silent 23 13618176 C T 29 60 BRCA TCGA-AN-A0FV SYAP1 SNP Missense_Mutation 23 16775411 G C 33 63 BRCA TCGA-AN-A0FV ALAS2 SNP Missense_Mutation 23 55046896 C T 27 95 BRCA TCGA-AN-A0FV OXNAD1 SNP Missense_Mutation 3 16343316 G A 45 50 BRCA TCGA-AN-A0FV DHX30 SNP Nonsense_Mutation 3 47890693 C T 25 94 BRCA TCGA-AN-A0FV C3orf71 SNP Missense_Mutation 3 48956003 C T 32 50 BRCA TCGA-AN-A0FV USP19 SNP Silent 3 49148221 G T 37 45 BRCA TCGA-AN-A0FV ENSG00000187900 SNP Missense_Mutation 3 97958040 T A 60 59 BRCA TCGA-AN-A0FV FAT1 SNP Missense_Mutation 4 187532774 G C 42 85 BRCA TCGA-AN-A0FV N4BP2 SNP Missense_Mutation 4 40104561 A G 4 51 BRCA TCGA-AN-A0FV H2AFY SNP Silent 5 134705192 G A 45 63 BRCA TCGA-AN-A0FV NPR3 SNP Missense_Mutation 5 32712623 C G 31 59 BRCA TCGA-AN-A0FV TNPO1 DEL Frame_Shift_Del 5 72144299 A - 6 84 BRCA TCGA-AN-A0FV ALDH8A1 SNP Missense_Mutation 6 135263550 C A 20 62 BRCA TCGA-AN-A0FV ZKSCAN4 SNP Missense_Mutation 6 28213028 G C 33 61 BRCA TCGA-AN-A0FV TDRD6 SNP Silent 6 46657944 G A 39 2 BRCA TCGA-AN-A0FV KHDC3L SNP Missense_Mutation 6 74072594 G A 45 59 BRCA TCGA-AN-A0FV DGKI SNP Missense_Mutation 7 137270022 C T 27 100 BRCA TCGA-AN-A0FV LMTK2 SNP Missense_Mutation 7 97821026 G A 41 82 BRCA TCGA-AN-A0FV ANGPT1 SNP Silent 8 108509559 C A 23 56 BRCA TCGA-AN-A0FV ST18 SNP Missense_Mutation 8 53084705 T G 62 65 BRCA TCGA-AN-A0FV TRIM55 SNP Missense_Mutation 8 67064633 A C 9 53 BRCA TCGA-AN-A0FV TTLL11 SNP Silent 9 124751816 G C 35 52 BRCA TCGA-AN-A0FV RAPGEF1 SNP Missense_Mutation 9 134501378 A C 1 87 BRCA TCGA-AN-A0FV FGD3 SNP Missense_Mutation 9 95765284 C A 18 60 BRCA TCGA-AN-A0FW DENND2C SNP Missense_Mutation 1 115168526 T A 63 80 BRCA TCGA-AN-A0FW FCRL2 SNP Missense_Mutation 1 157739898 G C 43 73 BRCA TCGA-AN-A0FW F5 SNP Missense_Mutation 1 169510162 C T 20 54 BRCA TCGA-AN-A0FW FMO4 SNP Missense_Mutation 1 171293331 G A 41 67 BRCA TCGA-AN-A0FW CACNA1E SNP Missense_Mutation 1 181685256 T C 54 88 BRCA TCGA-AN-A0FW TPR SNP Missense_Mutation 1 186305686 C A 24 69 BRCA TCGA-AN-A0FW OR6F1 SNP Missense_Mutation 1 247875610 C A 18 35 BRCA TCGA-AN-A0FW OR2L2 SNP Missense_Mutation 1 248202323 G T 46 52 BRCA TCGA-AN-A0FW PER3 SNP Missense_Mutation 1 7858698 T A 54 85 BRCA TCGA-AN-A0FW BNIP3 SNP Silent 10 133784252 G C 45 81 BRCA TCGA-AN-A0FW AVPI1 SNP Missense_Mutation 10 99437574 C A 21 41 BRCA TCGA-AN-A0FW NXPE4 SNP Silent 11 114453663 C A 29 51 BRCA TCGA-AN-A0FW AMBRA1 SNP Missense_Mutation 11 46430198 G A 34 66 BRCA TCGA-AN-A0FW OR5M1 SNP Missense_Mutation 11 56380447 A C 15 71 BRCA TCGA-AN-A0FW OR52N4 SNP Missense_Mutation 11 5776082 G T 48 51 BRCA TCGA-AN-A0FW FAM168A SNP Nonsense_Mutation 11 73141811 G C 44 57 BRCA TCGA-AN-A0FW TMEM132D SNP Missense_Mutation 12 129559313 T A 61 75 BRCA TCGA-AN-A0FW ZNF268 DEL In_Frame_Del 12 133780972 CTT - 24 43 BRCA TCGA-AN-A0FW SYT10 SNP Missense_Mutation 12 33592394 C T 31 71 BRCA TCGA-AN-A0FW ARID2 SNP Missense_Mutation 12 46287254 T G 63 60 BRCA TCGA-AN-A0FW TBK1 SNP Missense_Mutation 12 64849731 A T 10 51 BRCA TCGA-AN-A0FW TMTC4 SNP Missense_Mutation 13 101289953 G A 33 25 BRCA TCGA-AN-A0FW MYO16 SNP Splice_site 13 109437984 C A 28 87 BRCA TCGA-AN-A0FW ANKRD10 SNP Missense_Mutation 13 111532189 C A 20 76 BRCA TCGA-AN-A0FW UPF3A SNP Missense_Mutation 13 115052027 G A 48 58 BRCA TCGA-AN-A0FW DOCK9 SNP Missense_Mutation 13 99536130 C A 22 97 BRCA TCGA-AN-A0FW LOC653720 SNP Missense_Mutation 15 28947208 C G 28 50 BRCA TCGA-AN-A0FW ZNF770 SNP Missense_Mutation 15 35274018 C G 21 99 BRCA TCGA-AN-A0FW AP4E1 SNP Missense_Mutation 15 51250849 C T 17 50 BRCA TCGA-AN-A0FW CCPG1 DEL Frame_Shift_Del 15 55652817 TC - 62 74 BRCA TCGA-AN-A0FW BNC1 SNP Missense_Mutation 15 83926261 C T 31 100 BRCA TCGA-AN-A0FW XYLT1 SNP Missense_Mutation 16 17228421 C T 31 98 BRCA TCGA-AN-A0FW SPSB3 SNP Silent 16 1831446 G A 37 43 BRCA TCGA-AN-A0FW ATP2A1 SNP Nonsense_Mutation 16 28889996 G T 41 92 BRCA TCGA-AN-A0FW TAOK2 SNP Silent 16 29994057 C T 18 65 BRCA TCGA-AN-A0FW ABAT SNP Missense_Mutation 16 8860107 G A 41 73 BRCA TCGA-AN-A0FW MYH3 SNP Silent 17 10547934 A G 8 52 BRCA TCGA-AN-A0FW OR3A3 SNP Missense_Mutation 17 3324376 T A 51 66 BRCA TCGA-AN-A0FW OR1E2 SNP Silent 17 3337085 C A 25 42 BRCA TCGA-AN-A0FW STAT5A SNP Nonsense_Mutation 17 40453429 G T 45 97 BRCA TCGA-AN-A0FW ST8SIA5 SNP Silent 18 44336460 C T 23 45 BRCA TCGA-AN-A0FW NWD1 SNP Silent 19 16860608 G T 46 49 BRCA TCGA-AN-A0FW NFIC SNP Nonsense_Mutation 19 3381782 C T 25 92 BRCA TCGA-AN-A0FW PRX SNP Silent 19 40902117 G C 33 44 BRCA TCGA-AN-A0FW GRIK5 SNP Missense_Mutation 19 42566761 C G 20 65 BRCA TCGA-AN-A0FW GP6 SNP Silent 19 55525717 G T 35 50 BRCA TCGA-AN-A0FW FAM71E2 SNP Silent 19 55871345 G C 35 32 BRCA TCGA-AN-A0FW CATSPERD SNP Missense_Mutation 19 5749187 T G 49 56 BRCA TCGA-AN-A0FW IL18RAP SNP Missense_Mutation 2 103040529 C A 18 39 BRCA TCGA-AN-A0FW BAZ2B SNP Missense_Mutation 2 160303435 T C 60 72 BRCA TCGA-AN-A0FW ITGAV SNP Silent 2 187516748 G T 48 38 BRCA TCGA-AN-A0FW PLCL1 SNP Missense_Mutation 2 198948674 C T 31 77 BRCA TCGA-AN-A0FW MAPRE3 SNP Missense_Mutation 2 27247108 C G 18 55 BRCA TCGA-AN-A0FW BMP10 SNP Missense_Mutation 2 69092930 C T 25 100 BRCA TCGA-AN-A0FW VWA3B SNP Silent 2 98834364 C A 18 81 BRCA TCGA-AN-A0FW EMILIN3 SNP Nonsense_Mutation 20 39993701 C T 22 80 BRCA TCGA-AN-A0FW ZFP64 SNP Missense_Mutation 20 50768782 G T 41 68 BRCA TCGA-AN-A0FW CYP24A1 SNP Silent 20 52782317 C A 22 34 BRCA TCGA-AN-A0FW GNAS SNP Missense_Mutation 20 57428536 G A 35 40 BRCA TCGA-AN-A0FW SYCP2 SNP Nonsense_Mutation 20 58453083 C A 22 51 BRCA TCGA-AN-A0FW TTC28 SNP Missense_Mutation 22 28503210 C T 31 97 BRCA TCGA-AN-A0FW PPEF1 SNP Missense_Mutation 23 18822013 A C 16 53 BRCA TCGA-AN-A0FW ITIH6 SNP Missense_Mutation 23 54785405 C G 26 58 BRCA TCGA-AN-A0FW SENP7 SNP Missense_Mutation 3 101046584 G A 43 73 BRCA TCGA-AN-A0FW DZIP3 SNP Missense_Mutation 3 108361332 C T 23 58 BRCA TCGA-AN-A0FW MED12L SNP Silent 3 151127066 G A 38 49 BRCA TCGA-AN-A0FW VWA5B2 SNP Silent 3 183952157 G A 43 60 BRCA TCGA-AN-A0FW DLG1 SNP Missense_Mutation 3 197024060 G C 46 58 BRCA TCGA-AN-A0FW RBMS3 SNP Missense_Mutation 3 29804454 A T 16 68 BRCA TCGA-AN-A0FW DNAH12 SNP Missense_Mutation 3 57330424 C G 21 99 BRCA TCGA-AN-A0FW EGF SNP Missense_Mutation 4 110902030 A G 1 79 BRCA TCGA-AN-A0FW G3BP2 SNP Missense_Mutation 4 76573867 C A 31 94 BRCA TCGA-AN-A0FW OR2Y1 SNP Silent 5 180166708 C T 29 49 BRCA TCGA-AN-A0FW DROSHA SNP Missense_Mutation 5 31526930 T G 63 62 BRCA TCGA-AN-A0FW HCN1 SNP Splice_site 5 45267191 C A 24 100 BRCA TCGA-AN-A0FW ZSWIM6 SNP Missense_Mutation 5 60768572 C A 19 54 BRCA TCGA-AN-A0FW JMY SNP Missense_Mutation 5 78610274 G C 33 49 BRCA TCGA-AN-A0FW HIST1H3J SNP Missense_Mutation 6 27858488 T C 64 87 BRCA TCGA-AN-A0FW EYS SNP Missense_Mutation 6 66204693 G A 35 55 BRCA TCGA-AN-A0FW CDK13 SNP Missense_Mutation 7 40038962 T A 49 92 BRCA TCGA-AN-A0FW CDK6 SNP Missense_Mutation 7 92355060 G T 44 77 BRCA TCGA-AN-A0FW PILRB SNP Missense_Mutation 7 99956435 A G 8 46 BRCA TCGA-AN-A0FW FAM160B2 SNP Silent 8 21955752 C T 23 34 BRCA TCGA-AN-A0FW HOOK3 SNP Splice_site 8 42873640 A G 15 91 BRCA TCGA-AN-A0FW SDCBP SNP Silent 8 59492212 G A 35 62 BRCA TCGA-AN-A0FW ZFHX4 SNP Missense_Mutation 8 77618443 C T 32 100 BRCA TCGA-AN-A0FW NUP188 SNP Splice_Site 9 131760904 T A 59 85 BRCA TCGA-AN-A0FW ARHGEF39 SNP Splice_site 9 35663071 C G 22 61 BRCA TCGA-AN-A0FW KANK1 SNP Silent 9 712443 C T 31 46 BRCA TCGA-AN-A0FX FLG2 SNP Silent 1 152329344 T C 56 56 BRCA TCGA-AN-A0FX LCE1E SNP Missense_Mutation 1 152759900 C G 30 61 BRCA TCGA-AN-A0FX RRNAD1 SNP Missense_Mutation 1 156706431 T G 51 52 BRCA TCGA-AN-A0FX ATP1A4 SNP Missense_Mutation 1 160141540 G T 41 92 BRCA TCGA-AN-A0FX CACNA1E SNP Missense_Mutation 1 181693635 G A 38 98 BRCA TCGA-AN-A0FX UBR4 SNP Missense_Mutation 1 19524455 C G 20 84 BRCA TCGA-AN-A0FX TMEM9 SNP Missense_Mutation 1 201112979 G C 36 97 BRCA TCGA-AN-A0FX LGR6 SNP Missense_Mutation 1 202287842 C T 19 67 BRCA TCGA-AN-A0FX OR2G2 SNP Silent 1 247752246 C A 21 50 BRCA TCGA-AN-A0FX NCMAP SNP Missense_Mutation 1 24921959 T G 62 73 BRCA TCGA-AN-A0FX ST3GAL3 SNP Missense_Mutation 1 44365341 C T 26 98 BRCA TCGA-AN-A0FX YIPF1 SNP Missense_Mutation 1 54325811 C A 25 80 BRCA TCGA-AN-A0FX VAMP3 SNP Missense_Mutation 1 7837293 G A 40 89 BRCA TCGA-AN-A0FX TMEM201 DEL Frame_Shift_Del 1 9657089 C - 26 91 BRCA TCGA-AN-A0FX ZRANB1 SNP Missense_Mutation 10 126662834 C G 20 67 BRCA TCGA-AN-A0FX DHX32 SNP Missense_Mutation 10 127527584 C G 23 97 BRCA TCGA-AN-A0FX DNAJC9 SNP Missense_Mutation 10 75003261 C G 23 72 BRCA TCGA-AN-A0FX ATP5C1 SNP Missense_Mutation 10 7839114 G T 34 99 BRCA TCGA-AN-A0FX MYOF INS Frame_Shift_Ins 10 95169434 - C 42 61 BRCA TCGA-AN-A0FX SF3B2 INS Frame_Shift_Ins 11 65824744 - C 54 49 BRCA TCGA-AN-A0FX INPPL1 SNP Nonsense_Mutation 11 71939422 C T 21 63 BRCA TCGA-AN-A0FX WNT11 DEL Frame_Shift_Del 11 75917423 G - 38 58 BRCA TCGA-AN-A0FX PIDD INS Frame_Shift_Ins 11 803200 - G 23 53 BRCA TCGA-AN-A0FX DTX1 SNP Missense_Mutation 12 113496004 C G 19 61 BRCA TCGA-AN-A0FX SPPL3 SNP Missense_Mutation 12 121202863 C T 23 97 BRCA TCGA-AN-A0FX ERBB3 SNP Missense_Mutation 12 56486553 G C 46 66 BRCA TCGA-AN-A0FX ATP2B1 SNP Missense_Mutation 12 89996873 T C 52 91 BRCA TCGA-AN-A0FX EFNB2 SNP Missense_Mutation 13 107187297 C A 30 67 BRCA TCGA-AN-A0FX TEP1 SNP Missense_Mutation 14 20845601 C A 26 67 BRCA TCGA-AN-A0FX KLHDC1 DEL Splice_site 14 50199423 ATTACTATTAATGGAGAAAGCC - 12 68 BRCA TCGA-AN-A0FX HERC2 SNP Missense_Mutation 15 28511056 G A 46 96 BRCA TCGA-AN-A0FX RASGRF1 SNP Splice_site 15 79350823 G T 34 60 BRCA TCGA-AN-A0FX AKAP13 SNP Missense_Mutation 15 86122519 G A 48 51 BRCA TCGA-AN-A0FX MPV17L SNP Missense_Mutation 16 15501863 C T 18 59 BRCA TCGA-AN-A0FX LOC728888 SNP Silent 16 29394387 T C 63 50 BRCA TCGA-AN-A0FX CCDC79 SNP Silent 16 66820029 T G 55 60 BRCA TCGA-AN-A0FX LRRC36 SNP Missense_Mutation 16 67381482 A T 11 73 BRCA TCGA-AN-A0FX TMCO7 DEL In_Frame_Del 16 68936373 GGT - 35 78 BRCA TCGA-AN-A0FX MAP2K3 SNP Missense_Mutation 17 21205521 G T 41 99 BRCA TCGA-AN-A0FX CAMKK1 DEL Frame_Shift_Del 17 3769233 G - 38 49 BRCA TCGA-AN-A0FX KRTAP2-2 SNP Missense_Mutation 17 39211310 G A 38 64 BRCA TCGA-AN-A0FX JUP DEL Frame_Shift_Del 17 39777034 AG - 7 88 BRCA TCGA-AN-A0FX DGKE INS Frame_Shift_Ins 17 54912172 - G 27 63 BRCA TCGA-AN-A0FX TP53 SNP Missense_Mutation 17 7577539 G A 39 60 BRCA TCGA-AN-A0FX AQP4 SNP Missense_Mutation 18 24436200 G A 33 98 BRCA TCGA-AN-A0FX ZNF823 SNP Missense_Mutation 19 11832906 A T 2 53 BRCA TCGA-AN-A0FX TLE6 DEL Splice_Site 19 2987237 GT - 40 71 BRCA TCGA-AN-A0FX CD79A INS Splice_Site 19 42383057 - A 17 73 BRCA TCGA-AN-A0FX CIC SNP Silent 19 42794462 C A 22 55 BRCA TCGA-AN-A0FX ZNF296 INS Frame_Shift_Ins 19 45579448 - C 2 45 BRCA TCGA-AN-A0FX NLRP4 SNP Missense_Mutation 19 56370309 C T 27 49 BRCA TCGA-AN-A0FX INSIG2 SNP Missense_Mutation 2 118864325 G A 37 100 BRCA TCGA-AN-A0FX ASXL2 SNP Missense_Mutation 2 25967150 C G 20 66 BRCA TCGA-AN-A0FX FAM82A1 SNP Missense_Mutation 2 38178420 A G 12 55 BRCA TCGA-AN-A0FX VPS16 SNP Missense_Mutation 20 2843348 C A 32 75 BRCA TCGA-AN-A0FX PCNT SNP Missense_Mutation 21 47810717 G C 33 39 BRCA TCGA-AN-A0FX LIF SNP Missense_Mutation 22 30639798 C T 19 66 BRCA TCGA-AN-A0FX TTC38 SNP Missense_Mutation 22 46671227 G T 45 95 BRCA TCGA-AN-A0FX RGAG1 SNP Missense_Mutation 23 109694015 A G 10 66 BRCA TCGA-AN-A0FX MTM1 SNP Missense_Mutation 23 149814336 G A 42 100 BRCA TCGA-AN-A0FX FAM47C SNP Silent 23 37026498 G A 42 54 BRCA TCGA-AN-A0FX AKAP4 SNP Missense_Mutation 23 49957911 C A 32 72 BRCA TCGA-AN-A0FX NLGN4X SNP Missense_Mutation 23 5811009 G A 37 91 BRCA TCGA-AN-A0FX GOLGB1 SNP Missense_Mutation 3 121414165 C A 22 49 BRCA TCGA-AN-A0FX SOX14 INS Frame_Shift_Ins 3 137484002 - G 23 59 BRCA TCGA-AN-A0FX COLQ SNP Missense_Mutation 3 15540055 T C 51 47 BRCA TCGA-AN-A0FX AP2M1 DEL Frame_Shift_Del 3 183896686 CCCGGCAGCAGGTGCGCAGC - 26 97 BRCA TCGA-AN-A0FX TMEM207 SNP Missense_Mutation 3 190158147 G C 33 53 BRCA TCGA-AN-A0FX RARB SNP Silent 3 25470351 C T 23 66 BRCA TCGA-AN-A0FX ZNF167 SNP Missense_Mutation 3 44612620 G A 36 55 BRCA TCGA-AN-A0FX ITPR1 DEL Frame_Shift_Del 3 4824339 GT - 36 66 BRCA TCGA-AN-A0FX PCDH10 SNP Silent 4 134071574 G A 46 61 BRCA TCGA-AN-A0FX C4orf52 INS Frame_Shift_Ins 4 25915872 - G 31 56 BRCA TCGA-AN-A0FX ZNF141 SNP Missense_Mutation 4 366959 C G 25 79 BRCA TCGA-AN-A0FX CWH43 SNP Missense_Mutation 4 49040079 C G 28 76 BRCA TCGA-AN-A0FX RPS17P2 SNP Missense_Mutation 5 116052129 G T 42 68 BRCA TCGA-AN-A0FX CDC25C SNP Silent 5 137621470 G A 34 52 BRCA TCGA-AN-A0FX PSD2 SNP Missense_Mutation 5 139201528 G A 39 83 BRCA TCGA-AN-A0FX PCDHA9 SNP Missense_Mutation 5 140230065 C T 19 82 BRCA TCGA-AN-A0FX C5orf51 DEL In_Frame_Del 5 41904499 ACGAGTGGA - 10 51 BRCA TCGA-AN-A0FX KIAA0947 DEL Frame_Shift_Del 5 5461231 AAAAAGAAGA - 9 50 BRCA TCGA-AN-A0FX KIAA0947 DEL Frame_Shift_Del 5 5461242 AC - 14 50 BRCA TCGA-AN-A0FX ENSG00000227087 SNP Silent 5 79627524 C T 19 48 BRCA TCGA-AN-A0FX SEMA5A SNP Missense_Mutation 5 9224930 T G 63 85 BRCA TCGA-AN-A0FX ASCC3 SNP Silent 6 101086576 C T 23 46 BRCA TCGA-AN-A0FX TAAR5 SNP Missense_Mutation 6 132910165 T G 62 78 BRCA TCGA-AN-A0FX ARID1B DEL Frame_Shift_Del 6 157099194 CA - 25 56 BRCA TCGA-AN-A0FX TMEM151B SNP Missense_Mutation 6 44274744 A G 10 45 BRCA TCGA-AN-A0FX FAM135A SNP Nonsense_Mutation 6 71243517 C T 17 100 BRCA TCGA-AN-A0FX FLNC DEL Frame_Shift_Del 7 128491563 A - 10 93 BRCA TCGA-AN-A0FX KIAA1549 SNP Missense_Mutation 7 138604164 G C 46 76 BRCA TCGA-AN-A0FX AGK SNP Missense_Mutation 7 141311049 G A 48 56 BRCA TCGA-AN-A0FX TRBC1 SNP Missense_Mutation 7 142379031 C T 26 69 BRCA TCGA-AN-A0FX GIMAP7 SNP Missense_Mutation 7 150217085 C A 30 56 BRCA TCGA-AN-A0FX ESYT2 SNP Silent 7 158529792 T G 62 50 BRCA TCGA-AN-A0FX GPNMB SNP Missense_Mutation 7 23300153 C T 22 78 BRCA TCGA-AN-A0FX NFE2L3 SNP Missense_Mutation 7 26224471 G A 45 72 BRCA TCGA-AN-A0FX NPC1L1 SNP Silent 7 44578657 G A 34 73 BRCA TCGA-AN-A0FX KRIT1 SNP Missense_Mutation 7 91844024 T A 49 76 BRCA TCGA-AN-A0FX TFPI2 SNP Missense_Mutation 7 93516633 A C 7 83 BRCA TCGA-AN-A0FX MBLAC1 INS Frame_Shift_Ins 7 99725323 - G 59 84 BRCA TCGA-AN-A0FX XPO7 SNP Missense_Mutation 8 21862535 G A 37 93 BRCA TCGA-AN-A0FX CSPP1 SNP Silent 8 67986496 T C 49 55 BRCA TCGA-AN-A0FX RPL7 SNP Missense_Mutation 8 74205837 A C 14 37 BRCA TCGA-AN-A0FX SMC2 SNP Silent 9 106880574 A G 3 57 BRCA TCGA-AN-A0FX ACTL7B INS Frame_Shift_Ins 9 111617204 - C 42 57 BRCA TCGA-AN-A0FX STOM SNP Missense_Mutation 9 124103484 C G 26 52 BRCA TCGA-AN-A0FX OR1J2 SNP Missense_Mutation 9 125273997 G T 36 52 BRCA TCGA-AN-A0FX CACNA1B SNP Silent 9 140943756 G A 40 36 BRCA TCGA-AN-A0FX CNTLN SNP Missense_Mutation 9 17236550 G C 45 75 BRCA TCGA-AN-A0FY CR1 SNP Missense_Mutation 1 207726127 T G 59 49 BRCA TCGA-AN-A0FY TEKT2 SNP Splice_site 1 36553575 G A 41 57 BRCA TCGA-AN-A0FY TTC22 SNP Missense_Mutation 1 55253434 G A 40 75 BRCA TCGA-AN-A0FY PER3 DEL Frame_Shift_Del 1 7863784 CATTCTCC - 17 78 BRCA TCGA-AN-A0FY ZNF33A SNP Missense_Mutation 10 38343498 T C 62 57 BRCA TCGA-AN-A0FY KAT6B SNP Silent 10 76781040 A G 3 54 BRCA TCGA-AN-A0FY NFRKB SNP Missense_Mutation 11 129754709 G A 40 63 BRCA TCGA-AN-A0FY CNGA4 SNP Missense_Mutation 11 6261469 C T 23 75 BRCA TCGA-AN-A0FY NOS1 SNP Missense_Mutation 12 117723955 C T 23 99 BRCA TCGA-AN-A0FY PCED1B SNP Missense_Mutation 12 47630075 C T 19 23 BRCA TCGA-AN-A0FY SUOX DEL In_Frame_Del 12 56397811 TCT - 50 90 BRCA TCGA-AN-A0FY GPR162 SNP Missense_Mutation 12 6933549 G A 38 96 BRCA TCGA-AN-A0FY C1QTNF9B SNP Missense_Mutation 13 24465804 G A 40 71 BRCA TCGA-AN-A0FY RB1 SNP Nonsense_Mutation 13 48955538 C T 19 54 BRCA TCGA-AN-A0FY GPC6 SNP Missense_Mutation 13 94482640 G A 33 100 BRCA TCGA-AN-A0FY NID2 SNP Missense_Mutation 14 52493997 G A 39 60 BRCA TCGA-AN-A0FY MYO9A SNP Missense_Mutation 15 72170551 G A 40 83 BRCA TCGA-AN-A0FY ENSG00000234719 SNP Missense_Mutation 16 12021615 G C 33 NaN BRCA TCGA-AN-A0FY SH2B1 SNP Missense_Mutation 16 28878058 A G 7 54 BRCA TCGA-AN-A0FY KIAA0100 SNP Missense_Mutation 17 26961724 G C 39 72 BRCA TCGA-AN-A0FY TP53 SNP Missense_Mutation 17 7578413 C T 17 97 BRCA TCGA-AN-A0FY FAM59A SNP Missense_Mutation 18 29848211 C T 29 97 BRCA TCGA-AN-A0FY IL28B SNP Missense_Mutation 19 39735525 C T 27 11 BRCA TCGA-AN-A0FY LCT SNP Missense_Mutation 2 136567537 G A 37 76 BRCA TCGA-AN-A0FY NBAS SNP Missense_Mutation 2 15374721 A T 11 65 BRCA TCGA-AN-A0FY GAD1 SNP Missense_Mutation 2 171685996 A G 3 76 BRCA TCGA-AN-A0FY DTNB SNP Missense_Mutation 2 25611152 A G 10 88 BRCA TCGA-AN-A0FY STRN SNP Silent 2 37085129 C T 23 31 BRCA TCGA-AN-A0FY NRXN1 SNP Missense_Mutation 2 50464028 C T 28 100 BRCA TCGA-AN-A0FY CRNKL1 SNP Missense_Mutation 20 20033036 A C 1 53 BRCA TCGA-AN-A0FY CEP250 SNP Missense_Mutation 20 34092646 G A 39 51 BRCA TCGA-AN-A0FY SIGLEC1 SNP Silent 20 3683872 G A 34 51 BRCA TCGA-AN-A0FY PLCG1 SNP Nonsense_Mutation 20 39802848 C T 23 59 BRCA TCGA-AN-A0FY ARMCX5 SNP Missense_Mutation 23 101858403 G T 36 51 BRCA TCGA-AN-A0FY RBMXL3 SNP Missense_Mutation 23 114426631 G A 37 57 BRCA TCGA-AN-A0FY DMD SNP Missense_Mutation 23 31165506 C A 24 56 BRCA TCGA-AN-A0FY HEPH SNP Missense_Mutation 23 65475997 C G 30 51 BRCA TCGA-AN-A0FY GSK3B SNP Silent 3 119585461 T G 55 73 BRCA TCGA-AN-A0FY ZNF501 SNP Missense_Mutation 3 44776097 C A 17 55 BRCA TCGA-AN-A0FY SFMBT1 SNP Missense_Mutation 3 52977509 G A 44 100 BRCA TCGA-AN-A0FY MUC7 SNP Missense_Mutation 4 71346600 C T 17 46 BRCA TCGA-AN-A0FY ADAMTS3 SNP Silent 4 73149357 G A 47 60 BRCA TCGA-AN-A0FY DNAH5 SNP Silent 5 13923485 G A 37 44 BRCA TCGA-AN-A0FY C5orf25 SNP Missense_Mutation 5 175717341 C T 31 53 BRCA TCGA-AN-A0FY COL9A1 SNP Missense_Mutation 6 70942387 G A 43 79 BRCA TCGA-AN-A0FY RREB1 SNP Missense_Mutation 6 7211929 G A 33 77 BRCA TCGA-AN-A0FY ASIC3 SNP Missense_Mutation 7 150746364 G A 39 47 BRCA TCGA-AN-A0FY ELMO1 SNP Missense_Mutation 7 37253022 G A 38 100 BRCA TCGA-AN-A0FY RSPH10B DEL In_Frame_Del 7 5966167 GAA - 45 29 BRCA TCGA-AN-A0FY TATDN1 SNP Missense_Mutation 8 125506171 G A 48 95 BRCA TCGA-AN-A0FY OR13C8 SNP Missense_Mutation 9 107331659 G A 40 61 BRCA TCGA-AN-A0FZ PSMD4 SNP Missense_Mutation 1 151239784 G A 39 55 BRCA TCGA-AN-A0FZ HSPG2 SNP Missense_Mutation 1 22174253 C T 19 58 BRCA TCGA-AN-A0FZ PGM1 SNP Missense_Mutation 1 64097433 G A 40 100 BRCA TCGA-AN-A0FZ DMBT1 SNP Missense_Mutation 10 124377690 G T 43 46 BRCA TCGA-AN-A0FZ DOCK1 SNP Silent 10 128908590 C T 31 49 BRCA TCGA-AN-A0FZ SGPL1 SNP Nonsense_Mutation 10 72604349 G A 41 57 BRCA TCGA-AN-A0FZ OR5D18 SNP Missense_Mutation 11 55587367 G T 48 48 BRCA TCGA-AN-A0FZ FAT3 SNP Missense_Mutation 11 92616055 G A 42 100 BRCA TCGA-AN-A0FZ DNAH10 SNP Missense_Mutation 12 124341720 G A 40 100 BRCA TCGA-AN-A0FZ NELL2 SNP Missense_Mutation 12 45105162 G A 36 70 BRCA TCGA-AN-A0FZ OR6C6 SNP Missense_Mutation 12 55688683 G A 35 60 BRCA TCGA-AN-A0FZ OS9 SNP Silent 12 58114298 C T 32 56 BRCA TCGA-AN-A0FZ ATG2B SNP Missense_Mutation 14 96773188 C T 31 98 BRCA TCGA-AN-A0FZ AP4E1 SNP Missense_Mutation 15 51223146 C T 20 72 BRCA TCGA-AN-A0FZ SLCO3A1 SNP Missense_Mutation 15 92671615 C T 26 46 BRCA TCGA-AN-A0FZ SEPHS2 SNP Missense_Mutation 16 30455839 C T 19 70 BRCA TCGA-AN-A0FZ GPR114 SNP Missense_Mutation 16 57597859 T A 55 71 BRCA TCGA-AN-A0FZ MYBBP1A SNP Missense_Mutation 17 4448343 A G 6 86 BRCA TCGA-AN-A0FZ EVPL SNP Missense_Mutation 17 74004932 G A 38 61 BRCA TCGA-AN-A0FZ EPS15L1 SNP Silent 19 16514562 C T 27 33 BRCA TCGA-AN-A0FZ COMP SNP Missense_Mutation 19 18898318 C T 31 68 BRCA TCGA-AN-A0FZ ANKRD24 SNP Silent 19 4212477 G A 39 29 BRCA TCGA-AN-A0FZ MYBPC2 SNP Missense_Mutation 19 50957393 C A 18 67 BRCA TCGA-AN-A0FZ TRIB2 SNP Silent 2 12880596 C T 19 65 BRCA TCGA-AN-A0FZ TMC2 SNP Missense_Mutation 20 2596835 A G 2 89 BRCA TCGA-AN-A0FZ SLC32A1 SNP Silent 20 37356319 G A 47 55 BRCA TCGA-AN-A0FZ KRTAP19-6 SNP Missense_Mutation 21 31914098 C T 21 39 BRCA TCGA-AN-A0FZ DDX53 SNP Missense_Mutation 23 23018195 G T 36 66 BRCA TCGA-AN-A0FZ CFP SNP Missense_Mutation 23 47485822 C T 27 68 BRCA TCGA-AN-A0FZ TFRC SNP Missense_Mutation 3 195787076 G A 40 50 BRCA TCGA-AN-A0FZ N4BP2 SNP Missense_Mutation 4 40104400 C T 20 52 BRCA TCGA-AN-A0FZ GRSF1 SNP Silent 4 71697363 C A 29 43 BRCA TCGA-AN-A0FZ MGAT4B SNP Missense_Mutation 5 179225212 G A 38 77 BRCA TCGA-AN-A0FZ ISL1 SNP Missense_Mutation 5 50689391 T C 54 93 BRCA TCGA-AN-A0FZ MAST4 SNP Missense_Mutation 5 66438047 G A 45 100 BRCA TCGA-AN-A0FZ VNN2 SNP Missense_Mutation 6 133072390 A T 3 81 BRCA TCGA-AN-A0FZ GRM1 SNP Missense_Mutation 6 146480705 G A 40 83 BRCA TCGA-AN-A0FZ OPRM1 SNP Missense_Mutation 6 154412313 G T 48 65 BRCA TCGA-AN-A0FZ CUL7 SNP Missense_Mutation 6 43005481 C T 23 67 BRCA TCGA-AN-A0FZ COG5 SNP Missense_Mutation 7 106898812 T C 50 86 BRCA TCGA-AN-A0FZ ENSG00000225705 SNP Missense_Mutation 7 48887568 C T 30 60 BRCA TCGA-AN-A0FZ ZNF680 SNP Missense_Mutation 7 63982642 G T 45 46 BRCA TCGA-AN-A0FZ LZTS1 SNP Missense_Mutation 8 20112587 G A 39 58 BRCA TCGA-AN-A0FZ ZNF658 SNP Missense_Mutation 9 40773302 T C 49 57 BRCA TCGA-AN-A0FZ PTPRD SNP Nonsense_Mutation 9 8504363 C A 24 80 BRCA TCGA-AN-A0G0 PGD SNP Missense_Mutation 1 10477067 T G 56 63 BRCA TCGA-AN-A0G0 TOR1AIP1 SNP Missense_Mutation 1 179870511 G T 45 48 BRCA TCGA-AN-A0G0 NID1 SNP Missense_Mutation 1 236205579 C T 21 80 BRCA TCGA-AN-A0G0 ABCA4 SNP Missense_Mutation 1 94466444 T A 51 93 BRCA TCGA-AN-A0G0 MCAM SNP Silent 11 119181587 G T 39 52 BRCA TCGA-AN-A0G0 USP2 SNP Missense_Mutation 11 119229504 G A 40 72 BRCA TCGA-AN-A0G0 DNHD1 SNP Missense_Mutation 11 6579764 G A 33 79 BRCA TCGA-AN-A0G0 LOC100131539 SNP Silent 11 71527792 T C 55 26 BRCA TCGA-AN-A0G0 ALG10B SNP Missense_Mutation 12 38714401 G A 36 47 BRCA TCGA-AN-A0G0 FGF23 SNP Silent 12 4479739 G T 38 55 BRCA TCGA-AN-A0G0 ACVR1B SNP Splice_site 12 52379131 C T 19 65 BRCA TCGA-AN-A0G0 USP5 SNP Missense_Mutation 12 6964674 G A 39 66 BRCA TCGA-AN-A0G0 PHLDA1 SNP Missense_Mutation 12 76424820 G T 33 67 BRCA TCGA-AN-A0G0 C14orf37 SNP Missense_Mutation 14 58598350 G A 44 53 BRCA TCGA-AN-A0G0 SNRPN SNP Nonsense_Mutation 15 25222051 G T 47 75 BRCA TCGA-AN-A0G0 TPSAB1 SNP Silent 16 1292350 G A 40 40 BRCA TCGA-AN-A0G0 FAM157C SNP Missense_Mutation 16 90167886 G C 37 34 BRCA TCGA-AN-A0G0 TP53 SNP Nonsense_Mutation 17 7574003 G A 39 57 BRCA TCGA-AN-A0G0 SUPT5H SNP Missense_Mutation 19 39955678 G A 45 99 BRCA TCGA-AN-A0G0 NTSR2 SNP Missense_Mutation 2 11802135 C T 19 48 BRCA TCGA-AN-A0G0 GPR39 SNP Silent 2 133175158 G T 45 53 BRCA TCGA-AN-A0G0 FAM59B SNP Missense_Mutation 2 26405961 G A 40 96 BRCA TCGA-AN-A0G0 AFF2 SNP Missense_Mutation 23 148037946 C G 22 79 BRCA TCGA-AN-A0G0 USP9X SNP Missense_Mutation 23 41076559 C G 29 95 BRCA TCGA-AN-A0G0 TGFBR2 SNP Nonsense_Mutation 3 30732950 G A 43 88 BRCA TCGA-AN-A0G0 CAMK2D SNP Missense_Mutation 4 114434519 A G 12 91 BRCA TCGA-AN-A0G0 LAMA2 SNP Missense_Mutation 6 129785500 G A 40 100 BRCA TCGA-AN-A0G0 PHACTR1 SNP Missense_Mutation 6 13287303 G T 37 91 BRCA TCGA-AN-A0G0 NUP153 SNP Missense_Mutation 6 17629273 T A 51 47 BRCA TCGA-AN-A0G0 AARS2 SNP Missense_Mutation 6 44278884 C T 19 54 BRCA TCGA-AN-A0G0 LOC100132858 SNP Missense_Mutation 7 36290 C G 31 34 BRCA TCGA-AN-A0G0 AOAH SNP Silent 7 36698846 A G 8 53 BRCA TCGA-AN-A0G0 GRM3 SNP Missense_Mutation 7 86415634 G A 38 100 BRCA TCGA-AN-A0G0 COL14A1 SNP Silent 8 121222032 C T 19 48 BRCA TCGA-AN-A0G0 TMEM246 SNP Missense_Mutation 9 104238341 C T 27 61 BRCA TCGA-AN-A0XL HIST2H2BF SNP Missense_Mutation 1 149783828 C A 24 44 BRCA TCGA-AN-A0XL CD1C SNP Missense_Mutation 1 158261934 G A 42 49 BRCA TCGA-AN-A0XL GPATCH2 SNP Silent 1 217688214 T G 55 40 BRCA TCGA-AN-A0XL TARBP1 SNP Missense_Mutation 1 234566040 G T 48 53 BRCA TCGA-AN-A0XL RERE SNP Missense_Mutation 1 8421506 A C 2 53 BRCA TCGA-AN-A0XL TCF7L2 SNP Silent 10 114849224 T C 55 59 BRCA TCGA-AN-A0XL MKI67 SNP Missense_Mutation 10 129905447 C A 27 42 BRCA TCGA-AN-A0XL BBOX1 SNP Silent 11 27148982 G A 43 33 BRCA TCGA-AN-A0XL ARHGEF17 SNP Missense_Mutation 11 73076908 G A 39 96 BRCA TCGA-AN-A0XL AKAP13 SNP Missense_Mutation 15 86124520 C T 30 48 BRCA TCGA-AN-A0XL ANPEP INS Frame_Shift_Ins 15 90347735 - G 59 33 BRCA TCGA-AN-A0XL ENSG00000214627 SNP Missense_Mutation 16 31987200 G T 45 54 BRCA TCGA-AN-A0XL RNF157 SNP Missense_Mutation 17 74154520 G A 37 92 BRCA TCGA-AN-A0XL TRAPPC8 SNP Nonsense_Mutation 18 29497565 C A 29 99 BRCA TCGA-AN-A0XL CLEC17A SNP Missense_Mutation 19 14710534 G A 47 60 BRCA TCGA-AN-A0XL COMP SNP Missense_Mutation 19 18895094 C T 23 59 BRCA TCGA-AN-A0XL GABPA SNP Missense_Mutation 21 27141488 C G 21 97 BRCA TCGA-AN-A0XL ENSG00000222037 SNP Missense_Mutation 22 23055588 A G 2 56 BRCA TCGA-AN-A0XL CSTF2 SNP Missense_Mutation 23 100083082 C T 19 53 BRCA TCGA-AN-A0XL CHM SNP Missense_Mutation 23 85282501 A G 2 80 BRCA TCGA-AN-A0XL ATP2B2 SNP Silent 3 10370621 C T 19 48 BRCA TCGA-AN-A0XL DNAJB8 SNP Silent 3 128181429 C T 29 47 BRCA TCGA-AN-A0XL PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-AN-A0XL CHL1 SNP Nonsense_Mutation 3 436516 A T 1 58 BRCA TCGA-AN-A0XL ADH1B SNP Silent 4 100232778 G T 46 34 BRCA TCGA-AN-A0XL PCDHA6 SNP Silent 5 140209782 C T 31 38 BRCA TCGA-AN-A0XL ZNF292 DEL Frame_Shift_Del 6 87966725 ATATGCTGCATTTAAAATGCAGC - 4 44 BRCA TCGA-AN-A0XL INHBA SNP Nonsense_Mutation 7 41729515 C T 30 100 BRCA TCGA-AN-A0XL CROT SNP Silent 7 87005203 G A 33 66 BRCA TCGA-AN-A0XL MTERFD1 DEL In_Frame_Del 8 97263275 AGG - 3 84 BRCA TCGA-AN-A0XL DBH SNP Silent 9 136516770 C T 23 40 BRCA TCGA-AN-A0XL IFNE SNP Nonsense_Mutation 9 21481249 G A 39 52 BRCA TCGA-AN-A0XL UNC13B SNP Silent 9 35398604 G A 39 42 BRCA TCGA-AN-A0XN PEX14 SNP Silent 1 10678420 C T 27 42 BRCA TCGA-AN-A0XN IVL SNP Silent 1 152883341 G T 47 56 BRCA TCGA-AN-A0XN UBQLN4 SNP Missense_Mutation 1 156021546 C T 23 96 BRCA TCGA-AN-A0XN CD5L SNP Missense_Mutation 1 157804422 T C 58 53 BRCA TCGA-AN-A0XN TMEM82 SNP Missense_Mutation 1 16069647 G C 36 71 BRCA TCGA-AN-A0XN ITLN1 SNP Silent 1 160850397 A G 4 57 BRCA TCGA-AN-A0XN FCRLB SNP Missense_Mutation 1 161697280 A T 10 58 BRCA TCGA-AN-A0XN SPEN SNP Silent 1 16255132 G C 39 33 BRCA TCGA-AN-A0XN ASTN1 SNP Missense_Mutation 1 176857332 C A 24 61 BRCA TCGA-AN-A0XN SMG7 SNP Splice_site 1 183515472 G A 35 81 BRCA TCGA-AN-A0XN KIAA0090 SNP Silent 1 19545923 C T 20 83 BRCA TCGA-AN-A0XN CHI3L1 SNP Missense_Mutation 1 203154456 T A 50 52 BRCA TCGA-AN-A0XN LIN9 DEL Frame_Shift_Del 1 226421094 TTTTCAT - 52 64 BRCA TCGA-AN-A0XN TTC13 SNP Missense_Mutation 1 231052041 T G 52 90 BRCA TCGA-AN-A0XN OR2M2 SNP Missense_Mutation 1 248343859 A G 10 58 BRCA TCGA-AN-A0XN ZMYM4 SNP Missense_Mutation 1 35835672 C G 20 69 BRCA TCGA-AN-A0XN MACF1 SNP Missense_Mutation 1 39907664 G A 46 77 BRCA TCGA-AN-A0XN CLDN19 SNP Missense_Mutation 1 43200803 G T 47 66 BRCA TCGA-AN-A0XN ERMAP SNP Missense_Mutation 1 43296678 G A 48 49 BRCA TCGA-AN-A0XN NRD1 SNP Missense_Mutation 1 52344078 C G 24 68 BRCA TCGA-AN-A0XN TM2D1 SNP Missense_Mutation 1 62165923 C A 18 59 BRCA TCGA-AN-A0XN ABCC2 SNP Missense_Mutation 10 101611335 T C 61 66 BRCA TCGA-AN-A0XN ELOVL3 SNP Missense_Mutation 10 103988973 C G 29 47 BRCA TCGA-AN-A0XN COL17A1 SNP Missense_Mutation 10 105798207 G T 34 77 BRCA TCGA-AN-A0XN C10orf68 SNP Nonsense_Mutation 10 32977992 G T 33 58 BRCA TCGA-AN-A0XN ITGB1 SNP Missense_Mutation 10 33199265 G C 47 75 BRCA TCGA-AN-A0XN VSTM4 DEL In_Frame_Del 10 50311826 GGTGAA - 39 46 BRCA TCGA-AN-A0XN STOX1 SNP Missense_Mutation 10 70645645 G T 41 62 BRCA TCGA-AN-A0XN CDH23 SNP Missense_Mutation 10 73572580 G T 39 100 BRCA TCGA-AN-A0XN AGAP5 SNP Missense_Mutation 10 75435825 G T 44 61 BRCA TCGA-AN-A0XN KIAA0913 SNP Missense_Mutation 10 75556956 G C 47 68 BRCA TCGA-AN-A0XN STAMBPL1 SNP Splice_Site 10 90672857 G T 33 86 BRCA TCGA-AN-A0XN C10orf129 SNP Missense_Mutation 10 96967145 G T 43 69 BRCA TCGA-AN-A0XN CCDC73 SNP Missense_Mutation 11 32635102 G A 38 45 BRCA TCGA-AN-A0XN CSTF3 SNP Missense_Mutation 11 33106715 G A 45 81 BRCA TCGA-AN-A0XN ANO9 SNP Splice_site 11 429571 T A 55 85 BRCA TCGA-AN-A0XN OR4A5 SNP Missense_Mutation 11 51412037 C G 27 64 BRCA TCGA-AN-A0XN TMEM132C SNP Missense_Mutation 12 129154029 C A 32 81 BRCA TCGA-AN-A0XN PIK3C2G SNP Silent 12 18435045 T C 50 49 BRCA TCGA-AN-A0XN LIMA1 SNP Silent 12 50571618 G T 41 52 BRCA TCGA-AN-A0XN IL22 SNP Missense_Mutation 12 68647221 G T 42 57 BRCA TCGA-AN-A0XN C12orf50 SNP Splice_Site 12 88380088 C G 18 82 BRCA TCGA-AN-A0XN LATS2 DEL In_Frame_Del 13 21562480 GCCGGGGCGGGGGCGGGGGCGGGG - 34 59 BRCA TCGA-AN-A0XN USP12 SNP Missense_Mutation 13 27645275 C T 31 99 BRCA TCGA-AN-A0XN PTGDR SNP Missense_Mutation 14 52735064 T G 55 74 BRCA TCGA-AN-A0XN FBXO34 SNP Missense_Mutation 14 55819095 G C 35 78 BRCA TCGA-AN-A0XN C14orf166B SNP Missense_Mutation 14 77319604 G A 47 73 BRCA TCGA-AN-A0XN TMEM63C SNP Missense_Mutation 14 77723060 G C 36 48 BRCA TCGA-AN-A0XN C14orf102 SNP Nonsense_Mutation 14 90769385 C A 30 100 BRCA TCGA-AN-A0XN C14orf102 SNP Missense_Mutation 14 90769387 A G 7 91 BRCA TCGA-AN-A0XN PGBD4 SNP Missense_Mutation 15 34395268 C A 17 51 BRCA TCGA-AN-A0XN ATP8B4 SNP Missense_Mutation 15 50226338 A T 16 47 BRCA TCGA-AN-A0XN LRRC49 SNP Silent 15 71211475 T C 61 51 BRCA TCGA-AN-A0XN GPRC5B SNP Missense_Mutation 16 19883490 G C 45 71 BRCA TCGA-AN-A0XN ACSM2B SNP Nonsense_Mutation 16 20576155 G A 38 45 BRCA TCGA-AN-A0XN PKD1 SNP Missense_Mutation 16 2159963 G C 38 35 BRCA TCGA-AN-A0XN RBBP6 SNP Missense_Mutation 16 24580268 T A 49 84 BRCA TCGA-AN-A0XN CLN3 SNP Missense_Mutation 16 28493806 G C 47 86 BRCA TCGA-AN-A0XN SLC38A7 SNP Missense_Mutation 16 58709846 G T 48 100 BRCA TCGA-AN-A0XN LRRC29 SNP Missense_Mutation 16 67241593 A C 10 69 BRCA TCGA-AN-A0XN NFATC3 SNP Missense_Mutation 16 68156087 G C 35 57 BRCA TCGA-AN-A0XN CDRT1 DEL In_Frame_Del 17 15492463 AGCTGT - 11 51 BRCA TCGA-AN-A0XN C17orf97 SNP Missense_Mutation 17 262995 A T 8 72 BRCA TCGA-AN-A0XN HELZ SNP Missense_Mutation 17 65103686 T G 56 62 BRCA TCGA-AN-A0XN ITGB4 SNP Missense_Mutation 17 73736514 C A 26 54 BRCA TCGA-AN-A0XN TP53 SNP Splice_Site 17 7578556 T C 55 80 BRCA TCGA-AN-A0XN DNAH2 SNP Missense_Mutation 17 7661953 G A 40 71 BRCA TCGA-AN-A0XN DNAH2 SNP Missense_Mutation 17 7662906 A G 12 69 BRCA TCGA-AN-A0XN MYH10 SNP Missense_Mutation 17 8396156 C T 30 100 BRCA TCGA-AN-A0XN ASXL3 DEL Frame_Shift_Del 18 31324924 AACACAG - 1 47 BRCA TCGA-AN-A0XN MYL12B SNP Missense_Mutation 18 3277358 G T 33 100 BRCA TCGA-AN-A0XN TXNL4A DEL In_Frame_Del 18 77733812 TTG - 56 89 BRCA TCGA-AN-A0XN DAND5 SNP Silent 19 13080546 T C 55 47 BRCA TCGA-AN-A0XN NOTCH3 SNP Silent 19 15285085 G A 38 36 BRCA TCGA-AN-A0XN COMP SNP Missense_Mutation 19 18896603 C G 32 64 BRCA TCGA-AN-A0XN COMP SNP Missense_Mutation 19 18896620 C T 32 94 BRCA TCGA-AN-A0XN COMP SNP Missense_Mutation 19 18900027 C T 22 93 BRCA TCGA-AN-A0XN ANKRD27 SNP Silent 19 33090934 T C 57 35 BRCA TCGA-AN-A0XN HAUS5 SNP Missense_Mutation 19 36104782 G C 33 57 BRCA TCGA-AN-A0XN ZFP82 SNP Silent 19 36883688 A G 4 50 BRCA TCGA-AN-A0XN PLEKHG2 SNP Silent 19 39914124 A T 7 29 BRCA TCGA-AN-A0XN ARHGAP35 SNP Silent 19 47422145 C T 18 78 BRCA TCGA-AN-A0XN LENG1 SNP Missense_Mutation 19 54660546 C T 27 41 BRCA TCGA-AN-A0XN USP29 SNP Missense_Mutation 19 57642432 A C 8 42 BRCA TCGA-AN-A0XN ZSCAN1 SNP Missense_Mutation 19 58564986 T C 54 49 BRCA TCGA-AN-A0XN OR7D4 SNP Missense_Mutation 19 9324928 T A 61 48 BRCA TCGA-AN-A0XN GCC2 SNP Silent 2 109088320 A G 3 57 BRCA TCGA-AN-A0XN GPR35 SNP Silent 2 241569867 C A 22 53 BRCA TCGA-AN-A0XN EFEMP1 DEL Frame_Shift_Del 2 56144946 G - 46 67 BRCA TCGA-AN-A0XN EFEMP1 SNP Missense_Mutation 2 56144947 C A 25 74 BRCA TCGA-AN-A0XN FAM161A SNP Missense_Mutation 2 62081050 C T 30 56 BRCA TCGA-AN-A0XN TET3 SNP Missense_Mutation 2 74329093 G T 35 60 BRCA TCGA-AN-A0XN VWA3B SNP Missense_Mutation 2 98914472 C G 26 78 BRCA TCGA-AN-A0XN SIRPD SNP Silent 20 1538282 G T 43 58 BRCA TCGA-AN-A0XN PLCG1 SNP Missense_Mutation 20 39798875 A G 3 89 BRCA TCGA-AN-A0XN SEMG2 SNP Missense_Mutation 20 43851144 T C 62 50 BRCA TCGA-AN-A0XN MMP9 SNP Silent 20 44639873 C T 19 57 BRCA TCGA-AN-A0XN ZNF334 SNP Missense_Mutation 20 45130495 C A 21 63 BRCA TCGA-AN-A0XN EYA2 SNP Missense_Mutation 20 45702872 G A 40 60 BRCA TCGA-AN-A0XN CHGB SNP Missense_Mutation 20 5904477 T C 56 57 BRCA TCGA-AN-A0XN KRTAP6-1 SNP Missense_Mutation 21 31986039 C A 30 61 BRCA TCGA-AN-A0XN URB1 SNP Missense_Mutation 21 33750825 T G 57 76 BRCA TCGA-AN-A0XN ADRBK2 SNP Missense_Mutation 22 26100079 G A 48 94 BRCA TCGA-AN-A0XN MYH9 SNP Silent 22 36689868 G A 48 56 BRCA TCGA-AN-A0XN RANGAP1 SNP Missense_Mutation 22 41652046 G A 42 62 BRCA TCGA-AN-A0XN TTLL1 SNP Missense_Mutation 22 43465764 T C 60 90 BRCA TCGA-AN-A0XN COL4A5 SNP Missense_Mutation 23 107924995 C T 30 90 BRCA TCGA-AN-A0XN USP9X INS Frame_Shift_Ins 23 41048632 - A 61 90 BRCA TCGA-AN-A0XN FAM155B SNP Missense_Mutation 23 68725887 C A 18 63 BRCA TCGA-AN-A0XN TAF1 SNP Nonsense_Mutation 23 70607214 T G 61 85 BRCA TCGA-AN-A0XN PLOD2 SNP Nonsense_Mutation 3 145841966 G A 37 76 BRCA TCGA-AN-A0XN IGSF10 SNP Missense_Mutation 3 151154674 C G 32 68 BRCA TCGA-AN-A0XN PAK2 SNP Missense_Mutation 3 196509620 C G 29 81 BRCA TCGA-AN-A0XN LRCH3 DEL Frame_Shift_Del 3 197556459 ATATTTAA - 8 88 BRCA TCGA-AN-A0XN NEK10 SNP Missense_Mutation 3 27394317 T G 56 55 BRCA TCGA-AN-A0XN SUSD5 SNP Silent 3 33194513 C A 17 48 BRCA TCGA-AN-A0XN TTC21A SNP Missense_Mutation 3 39162585 G C 42 73 BRCA TCGA-AN-A0XN TMEM115 SNP Silent 3 50396249 C T 21 56 BRCA TCGA-AN-A0XN DOCK3 SNP Silent 3 51378786 G T 41 45 BRCA TCGA-AN-A0XN ARL8B SNP Missense_Mutation 3 5220352 T G 50 91 BRCA TCGA-AN-A0XN FLNB SNP Silent 3 58124079 G C 41 55 BRCA TCGA-AN-A0XN RXFP1 SNP Missense_Mutation 4 159573147 C G 29 64 BRCA TCGA-AN-A0XN IRF2 SNP Missense_Mutation 4 185329410 G C 33 81 BRCA TCGA-AN-A0XN KDR SNP Missense_Mutation 4 55979642 G A 46 60 BRCA TCGA-AN-A0XN AFF1 SNP Missense_Mutation 4 88029327 C T 30 59 BRCA TCGA-AN-A0XN SLC6A19 SNP Silent 5 1219062 C T 21 66 BRCA TCGA-AN-A0XN DNAH5 SNP Silent 5 13866371 G A 34 52 BRCA TCGA-AN-A0XN C5orf65 SNP Silent 5 138729040 C G 30 51 BRCA TCGA-AN-A0XN DNAH5 SNP Missense_Mutation 5 13902205 G C 45 60 BRCA TCGA-AN-A0XN EGFLAM SNP Missense_Mutation 5 38431296 C A 18 60 BRCA TCGA-AN-A0XN ZNF131 SNP Missense_Mutation 5 43174618 C A 18 97 BRCA TCGA-AN-A0XN ARHGEF28 SNP Missense_Mutation 5 73153573 A G 4 77 BRCA TCGA-AN-A0XN LAMA4 SNP Missense_Mutation 6 112452195 C T 19 47 BRCA TCGA-AN-A0XN AHI1 SNP Missense_Mutation 6 135776985 T C 61 90 BRCA TCGA-AN-A0XN PLEKHG1 SNP Silent 6 151055039 G A 39 44 BRCA TCGA-AN-A0XN SYNE1 SNP Missense_Mutation 6 152737562 C T 32 78 BRCA TCGA-AN-A0XN MLLT4 DEL In_Frame_Del 6 168347423 AGAGTGAAGGCTTTG - 3 92 BRCA TCGA-AN-A0XN ZSCAN23 SNP Nonsense_Mutation 6 28403825 G T 42 64 BRCA TCGA-AN-A0XN ARMC12 SNP Silent 6 35704942 C T 29 54 BRCA TCGA-AN-A0XN C6orf146 SNP Missense_Mutation 6 4073690 C T 18 64 BRCA TCGA-AN-A0XN SLC29A1 SNP Missense_Mutation 6 44195040 A G 2 42 BRCA TCGA-AN-A0XN EFHC1 SNP Missense_Mutation 6 52303141 A G 16 47 BRCA TCGA-AN-A0XN RELN SNP Splice_Site 7 103212629 A C 14 87 BRCA TCGA-AN-A0XN NRF1 SNP Missense_Mutation 7 129297253 C T 26 77 BRCA TCGA-AN-A0XN PKD1L1 SNP Silent 7 47897212 A G 11 57 BRCA TCGA-AN-A0XN OR2AE1 SNP Missense_Mutation 7 99474106 A C 2 71 BRCA TCGA-AN-A0XN PKHD1L1 SNP Missense_Mutation 8 110441588 T C 52 61 BRCA TCGA-AN-A0XN NEFL SNP Nonsense_Mutation 8 24813917 G T 45 93 BRCA TCGA-AN-A0XN TGS1 SNP Missense_Mutation 8 56699101 A T 5 57 BRCA TCGA-AN-A0XN RUNX1T1 SNP Silent 8 92982889 G A 38 49 BRCA TCGA-AN-A0XN CDH17 SNP Silent 8 95189827 A G 11 51 BRCA TCGA-AN-A0XN COL15A1 SNP Missense_Mutation 9 101759318 G C 41 72 BRCA TCGA-AN-A0XN OR13C4 SNP Missense_Mutation 9 107289314 C T 17 71 BRCA TCGA-AN-A0XN HSDL2 SNP Missense_Mutation 9 115221807 C T 25 64 BRCA TCGA-AN-A0XN ODF2 SNP Missense_Mutation 9 131247725 C A 24 73 BRCA TCGA-AN-A0XN CDC37L1 SNP Missense_Mutation 9 4684908 A G 5 62 BRCA TCGA-AN-A0XN TMEM2 SNP Silent 9 74300299 T A 49 61 BRCA TCGA-AN-A0XO VPS72 SNP Missense_Mutation 1 151162528 C T 32 81 BRCA TCGA-AN-A0XO PBXIP1 SNP Missense_Mutation 1 154918213 T A 50 65 BRCA TCGA-AN-A0XO HEATR8 SNP Missense_Mutation 1 55118602 G A 47 69 BRCA TCGA-AN-A0XO BAG3 SNP Missense_Mutation 10 121429471 C T 30 96 BRCA TCGA-AN-A0XO C10orf27 SNP Missense_Mutation 10 72541754 C T 27 28 BRCA TCGA-AN-A0XO HECTD2 SNP Silent 10 93258862 A G 8 53 BRCA TCGA-AN-A0XO TRIM77 SNP Missense_Mutation 11 89447501 A T 2 46 BRCA TCGA-AN-A0XO EP400NL SNP Silent 12 132589423 G A 38 45 BRCA TCGA-AN-A0XO LRRK2 SNP Missense_Mutation 12 40714892 T C 50 90 BRCA TCGA-AN-A0XO GALNT6 SNP Silent 12 51771043 G A 41 62 BRCA TCGA-AN-A0XO KRT18 SNP Silent 12 53344651 C T 29 54 BRCA TCGA-AN-A0XO NAV3 SNP Nonsense_Mutation 12 78444719 C T 31 78 BRCA TCGA-AN-A0XO ZMYM2 SNP Missense_Mutation 13 20641448 A G 8 63 BRCA TCGA-AN-A0XO FAM124A SNP Silent 13 51855020 G C 39 38 BRCA TCGA-AN-A0XO TBC1D4 SNP Missense_Mutation 13 76055696 C T 31 79 BRCA TCGA-AN-A0XO PACS2 SNP Splice_site 14 105856299 C G 22 93 BRCA TCGA-AN-A0XO SRRM2 DEL In_Frame_Del 16 2817256 GCCAGC - 34 78 BRCA TCGA-AN-A0XO ZG16 SNP Missense_Mutation 16 29790955 T C 57 76 BRCA TCGA-AN-A0XO WDR62 SNP Missense_Mutation 19 36595494 T C 50 49 BRCA TCGA-AN-A0XO IL1R2 DEL Frame_Shift_Del 2 102625086 CAGC - 29 63 BRCA TCGA-AN-A0XO IL1R2 SNP Missense_Mutation 2 102625095 G A 42 63 BRCA TCGA-AN-A0XO SF3B1 SNP Missense_Mutation 2 198266834 T C 62 93 BRCA TCGA-AN-A0XO ANKMY1 SNP Missense_Mutation 2 241468736 G A 45 56 BRCA TCGA-AN-A0XO NCOA1 SNP Missense_Mutation 2 24905948 C A 19 48 BRCA TCGA-AN-A0XO TTC27 SNP Missense_Mutation 2 32889484 A G 12 78 BRCA TCGA-AN-A0XO SNRNP200 SNP Silent 2 96964156 A G 1 68 BRCA TCGA-AN-A0XO ADAMTS5 SNP Missense_Mutation 21 28307044 C T 31 74 BRCA TCGA-AN-A0XO GRIPAP1 SNP Missense_Mutation 23 48837669 C T 30 93 BRCA TCGA-AN-A0XO KIAA2018 SNP Missense_Mutation 3 113379390 C G 22 51 BRCA TCGA-AN-A0XO HGD SNP Silent 3 120369683 G A 48 57 BRCA TCGA-AN-A0XO PIK3CA SNP Missense_Mutation 3 178928079 G A 33 98 BRCA TCGA-AN-A0XO PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-AN-A0XO PCDH10 SNP Silent 4 134071406 C T 31 71 BRCA TCGA-AN-A0XO KIAA1211 SNP Missense_Mutation 4 57189551 A G 12 51 BRCA TCGA-AN-A0XO HSD17B13 INS Splice_Site 4 88231392 - A 61 76 BRCA TCGA-AN-A0XO TAAR2 SNP Silent 6 132938832 A G 7 45 BRCA TCGA-AN-A0XO TAP1 DEL Splice_Site 6 32818088 GGTGCTCACACTAGT - 35 58 BRCA TCGA-AN-A0XO COL12A1 SNP Missense_Mutation 6 75823017 G A 40 73 BRCA TCGA-AN-A0XO CDCA2 SNP Missense_Mutation 8 25325771 T C 60 52 BRCA TCGA-AN-A0XO PREX2 SNP Missense_Mutation 8 68939478 C T 19 56 BRCA TCGA-AN-A0XO PHF19 SNP Missense_Mutation 9 123629214 C G 23 96 BRCA TCGA-AN-A0XO GSN SNP Silent 9 124079465 C T 19 47 BRCA TCGA-AN-A0XO OR1Q1 SNP Missense_Mutation 9 125377610 G A 45 58 BRCA TCGA-AN-A0XP CD2 SNP Nonsense_Mutation 1 117311091 G T 41 54 BRCA TCGA-AN-A0XP CHD1L SNP Missense_Mutation 1 146724328 C T 27 46 BRCA TCGA-AN-A0XP HIST2H2AC SNP Silent 1 149858866 C G 23 49 BRCA TCGA-AN-A0XP LBR SNP Missense_Mutation 1 225592382 C T 25 69 BRCA TCGA-AN-A0XP CAPN1 SNP Missense_Mutation 11 64953422 T C 59 86 BRCA TCGA-AN-A0XP APPL2 SNP Missense_Mutation 12 105570747 C G 32 66 BRCA TCGA-AN-A0XP SCN8A SNP Missense_Mutation 12 52115519 G A 37 63 BRCA TCGA-AN-A0XP USP15 SNP Splice_Site 12 62784642 A C 3 87 BRCA TCGA-AN-A0XP CSNK1A1L SNP Missense_Mutation 13 37678520 A G 16 74 BRCA TCGA-AN-A0XP ENSG00000136149 SNP Missense_Mutation 13 55015392 G A 38 62 BRCA TCGA-AN-A0XP OR4K14 SNP Missense_Mutation 14 20482985 C G 32 89 BRCA TCGA-AN-A0XP RTN4RL1 SNP Silent 17 1839853 C T 23 50 BRCA TCGA-AN-A0XP SLC1A4 SNP Splice_Site 2 65243809 T C 59 94 BRCA TCGA-AN-A0XP SNRNP200 SNP Missense_Mutation 2 96956114 G A 41 85 BRCA TCGA-AN-A0XP CYP24A1 SNP Splice_Site 20 52789446 A T 6 86 BRCA TCGA-AN-A0XP KRTAP13-4 SNP Missense_Mutation 21 31802736 A G 14 52 BRCA TCGA-AN-A0XP SH3BP1 SNP Missense_Mutation 22 38037425 C G 30 51 BRCA TCGA-AN-A0XP TMEM47 SNP Silent 23 34674970 C G 30 67 BRCA TCGA-AN-A0XP CCDC120 SNP Missense_Mutation 23 48924824 C T 23 64 BRCA TCGA-AN-A0XP PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-AN-A0XP FAT1 SNP Nonsense_Mutation 4 187524066 G A 45 58 BRCA TCGA-AN-A0XP HSD17B4 DEL Splice_site 5 118860980 G - 35 87 BRCA TCGA-AN-A0XP KIAA0947 SNP Missense_Mutation 5 5457514 G A 42 54 BRCA TCGA-AN-A0XP ELL2 DEL Frame_Shift_Del 5 95234058 CCTTATG - 30 96 BRCA TCGA-AN-A0XP NCR2 SNP Silent 6 41304105 C A 32 52 BRCA TCGA-AN-A0XP MLL3 DEL Frame_Shift_Del 7 151845282 GG - 35 96 BRCA TCGA-AN-A0XP WIPF3 SNP Silent 7 29923974 G A 34 42 BRCA TCGA-AN-A0XP GTF2IRD2 SNP Missense_Mutation 7 74234113 T C 52 41 BRCA TCGA-AN-A0XP SHARPIN SNP Silent 8 145154196 A C 11 52 BRCA TCGA-AN-A0XP TACC1 SNP Missense_Mutation 8 38684873 C T 27 56 BRCA TCGA-AN-A0XP CAMSAP1 SNP Silent 9 138714311 A T 11 23 BRCA TCGA-AN-A0XR GNAT2 SNP Missense_Mutation 1 110151266 C T 29 97 BRCA TCGA-AN-A0XR KIF17 SNP Missense_Mutation 1 21014005 G A 43 56 BRCA TCGA-AN-A0XR PLD5 SNP Missense_Mutation 1 242253346 G T 46 62 BRCA TCGA-AN-A0XR CHD5 SNP Silent 1 6206325 G A 44 58 BRCA TCGA-AN-A0XR ASB17 SNP Missense_Mutation 1 76397891 C T 32 68 BRCA TCGA-AN-A0XR GATA3 INS Frame_Shift_Ins 10 8115874 - G 31 85 BRCA TCGA-AN-A0XR C11orf63 SNP Missense_Mutation 11 122805197 G A 45 59 BRCA TCGA-AN-A0XR TBX3 INS Frame_Shift_Ins 12 115118687 - C 50 64 BRCA TCGA-AN-A0XR IQSEC3 SNP Missense_Mutation 12 247616 A T 11 54 BRCA TCGA-AN-A0XR SLC6A13 SNP Missense_Mutation 12 346454 C T 23 100 BRCA TCGA-AN-A0XR FAM186A SNP Missense_Mutation 12 50757068 G T 41 42 BRCA TCGA-AN-A0XR EEA1 SNP Silent 12 93192857 A T 11 62 BRCA TCGA-AN-A0XR AKT1 SNP Missense_Mutation 14 105246445 A C 11 87 BRCA TCGA-AN-A0XR SLC51B SNP Missense_Mutation 15 65345362 G A 42 50 BRCA TCGA-AN-A0XR SRCAP SNP Missense_Mutation 16 30718965 G A 42 68 BRCA TCGA-AN-A0XR CMTM2 SNP Silent 16 66613573 G A 43 47 BRCA TCGA-AN-A0XR PRMT7 SNP Missense_Mutation 16 68389705 C G 22 81 BRCA TCGA-AN-A0XR MAP2K4 INS Frame_Shift_Ins 17 11998971 - C 46 86 BRCA TCGA-AN-A0XR NWD1 SNP Silent 19 16860188 G A 40 38 BRCA TCGA-AN-A0XR STXBP2 SNP Missense_Mutation 19 7712301 C T 28 66 BRCA TCGA-AN-A0XR PTBP1 SNP Missense_Mutation 19 808664 C G 20 66 BRCA TCGA-AN-A0XR OR2Z1 SNP Missense_Mutation 19 8841539 G A 40 43 BRCA TCGA-AN-A0XR FAM65C SNP Silent 20 49236588 C T 23 38 BRCA TCGA-AN-A0XR BRWD1 SNP Missense_Mutation 21 40587280 G C 33 98 BRCA TCGA-AN-A0XR GNL3L SNP Missense_Mutation 23 54574726 G T 41 88 BRCA TCGA-AN-A0XR KIAA2018 SNP Missense_Mutation 3 113374374 G A 45 82 BRCA TCGA-AN-A0XR COL6A5 SNP Missense_Mutation 3 130134498 G A 43 71 BRCA TCGA-AN-A0XR APC SNP Silent 5 112179286 C G 21 56 BRCA TCGA-AN-A0XR PCDHAC1 SNP Missense_Mutation 5 140307132 G C 36 68 BRCA TCGA-AN-A0XR MAT2B SNP Missense_Mutation 5 162943532 G T 48 76 BRCA TCGA-AN-A0XR CDH9 SNP Missense_Mutation 5 26881437 G T 44 58 BRCA TCGA-AN-A0XR HDDC2 SNP Missense_Mutation 6 125614019 C T 30 69 BRCA TCGA-AN-A0XR GPLD1 SNP Missense_Mutation 6 24456781 C T 19 48 BRCA TCGA-AN-A0XR INTS8 SNP Silent 8 95892348 C G 29 47 BRCA TCGA-AN-A0XS TNFRSF8 SNP Missense_Mutation 1 12157238 G T 42 48 BRCA TCGA-AN-A0XS RCSD1 SNP Missense_Mutation 1 167667018 G T 42 43 BRCA TCGA-AN-A0XS ROR1 SNP Missense_Mutation 1 64643303 A C 4 59 BRCA TCGA-AN-A0XS TAF3 DEL Frame_Shift_Del 10 8006100 ATTG - 16 50 BRCA TCGA-AN-A0XS PHLDB1 SNP Missense_Mutation 11 118486807 G A 42 96 BRCA TCGA-AN-A0XS NT5DC3 SNP Missense_Mutation 12 104208866 T A 52 91 BRCA TCGA-AN-A0XS XRCC6BP1 DEL Frame_Shift_Del 12 58339430 G - 46 15 BRCA TCGA-AN-A0XS XRCC6BP1 DEL Frame_Shift_Del 12 58339432 T - 56 82 BRCA TCGA-AN-A0XS MKRN3 SNP Silent 15 23811331 G A 38 49 BRCA TCGA-AN-A0XS INO80 SNP Missense_Mutation 15 41275191 G A 42 74 BRCA TCGA-AN-A0XS C18orf54 SNP Missense_Mutation 18 51889197 G A 45 62 BRCA TCGA-AN-A0XS PTPRM SNP Silent 18 8088802 C T 23 28 BRCA TCGA-AN-A0XS SLC44A2 SNP Missense_Mutation 19 10742416 A G 11 85 BRCA TCGA-AN-A0XS ACVR2A SNP Missense_Mutation 2 148680662 C T 31 100 BRCA TCGA-AN-A0XS AOX1 SNP Missense_Mutation 2 201523988 T A 59 55 BRCA TCGA-AN-A0XS ATIC SNP Missense_Mutation 2 216177253 G A 48 60 BRCA TCGA-AN-A0XS THNSL2 DEL Frame_Shift_Del 2 88482500 C - 28 62 BRCA TCGA-AN-A0XS THNSL2 DEL Frame_Shift_Del 2 88482502 CTCTGGCTCTGACAGC - 32 47 BRCA TCGA-AN-A0XS SLC4A11 SNP Silent 20 3214874 G A 40 44 BRCA TCGA-AN-A0XS ATP9A SNP Nonsense_Mutation 20 50287755 C T 21 96 BRCA TCGA-AN-A0XS SMC1B SNP Missense_Mutation 22 45789669 C T 29 56 BRCA TCGA-AN-A0XS PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-AN-A0XS PDZRN3 SNP Missense_Mutation 3 73433946 C T 31 97 BRCA TCGA-AN-A0XS WDFY3 SNP Missense_Mutation 4 85600076 T A 60 55 BRCA TCGA-AN-A0XS SLC25A2 SNP Missense_Mutation 5 140682837 G A 38 75 BRCA TCGA-AN-A0XS SH3PXD2B SNP Missense_Mutation 5 171766645 C A 30 78 BRCA TCGA-AN-A0XS MAP3K1 DEL Splice_site 5 56177098 AGGTAATTTTTCTTCTGAAA - 7 81 BRCA TCGA-AN-A0XS HGC6.3 SNP Silent 6 168377051 G T 43 27 BRCA TCGA-AN-A0XS ABT1 SNP Missense_Mutation 6 26598210 G T 41 74 BRCA TCGA-AN-A0XS FKSG83 SNP Missense_Mutation 6 27293456 C T 29 60 BRCA TCGA-AN-A0XS CRHR2 SNP Silent 7 30704716 G A 37 55 BRCA TCGA-AN-A0XT EIF2C3 SNP Silent 1 36509128 C T 32 85 BRCA TCGA-AN-A0XT TULP3 SNP Missense_Mutation 12 3040249 A G 2 47 BRCA TCGA-AN-A0XT LPAR6 SNP Missense_Mutation 13 48986180 A G 15 94 BRCA TCGA-AN-A0XT ADAMTS17 SNP Missense_Mutation 15 100649205 C T 23 86 BRCA TCGA-AN-A0XT RPL4 SNP Silent 15 66795050 G A 35 48 BRCA TCGA-AN-A0XT TP53 SNP Splice_Site 17 7578555 C T 20 82 BRCA TCGA-AN-A0XT DHDH SNP Silent 19 49438313 C T 19 51 BRCA TCGA-AN-A0XT DNMT3A SNP Missense_Mutation 2 25457242 C T 27 99 BRCA TCGA-AN-A0XT FAM179A SNP Missense_Mutation 2 29259479 G A 38 57 BRCA TCGA-AN-A0XT APLF SNP Missense_Mutation 2 68794511 C T 19 50 BRCA TCGA-AN-A0XT COL6A2 SNP Missense_Mutation 21 47549113 C T 25 52 BRCA TCGA-AN-A0XT POLR2F SNP Missense_Mutation 22 38349806 C A 19 66 BRCA TCGA-AN-A0XT SEC22A SNP Missense_Mutation 3 122990400 G A 39 99 BRCA TCGA-AN-A0XT TREM1 SNP Splice_site 6 41243863 C T 24 57 BRCA TCGA-AN-A0XT HTR5A SNP Missense_Mutation 7 154862859 G A 40 53 BRCA TCGA-AN-A0XT LMBR1 SNP Silent 7 156619309 G A 43 54 BRCA TCGA-AN-A0XT TMED4 SNP Silent 7 44621754 G A 34 55 BRCA TCGA-AN-A0XU SDF4 DEL In_Frame_Del 1 1153907 GTCTTTCACCCAGTTGTC - 48 53 BRCA TCGA-AN-A0XU HSD3B2 SNP Missense_Mutation 1 119964794 T C 53 82 BRCA TCGA-AN-A0XU ITGA10 SNP Missense_Mutation 1 145527965 G T 37 61 BRCA TCGA-AN-A0XU RAB13 SNP Silent 1 153955065 C T 28 51 BRCA TCGA-AN-A0XU ITLN2 SNP Splice_site 1 160924178 T G 55 45 BRCA TCGA-AN-A0XU SPEN DEL Frame_Shift_Del 1 16199441 AG - 7 77 BRCA TCGA-AN-A0XU NUF2 SNP Missense_Mutation 1 163318796 C G 29 60 BRCA TCGA-AN-A0XU C1orf220 SNP Missense_Mutation 1 178514978 C G 24 49 BRCA TCGA-AN-A0XU OR2T12 SNP Missense_Mutation 1 248458366 A T 12 63 BRCA TCGA-AN-A0XU NASP SNP Splice_Site 1 46072992 G C 33 99 BRCA TCGA-AN-A0XU GBP7 SNP Missense_Mutation 1 89613451 C A 32 51 BRCA TCGA-AN-A0XU KAZALD1 SNP Silent 10 102824287 G T 45 62 BRCA TCGA-AN-A0XU PPP2R2D SNP Missense_Mutation 10 133748053 A T 2 54 BRCA TCGA-AN-A0XU MYO3A SNP Silent 10 26436364 C T 32 49 BRCA TCGA-AN-A0XU DNAJC9 SNP Missense_Mutation 10 75005836 G C 48 54 BRCA TCGA-AN-A0XU ZMIZ1 SNP Missense_Mutation 10 81058277 G A 40 99 BRCA TCGA-AN-A0XU TRPC6 DEL Frame_Shift_Del 11 101375047 TGGGAGAACCGTGTCCCAT - 51 64 BRCA TCGA-AN-A0XU DIXDC1 SNP Missense_Mutation 11 111857608 G T 36 92 BRCA TCGA-AN-A0XU LGR4 SNP Missense_Mutation 11 27406951 G A 40 78 BRCA TCGA-AN-A0XU OSBPL5 SNP Silent 11 3141816 G A 38 50 BRCA TCGA-AN-A0XU ANO9 DEL Frame_Shift_Del 11 428132 GAAGA - 45 52 BRCA TCGA-AN-A0XU F2 SNP Silent 11 46750993 A T 7 13 BRCA TCGA-AN-A0XU OR9G4 SNP Silent 11 56510658 G A 40 45 BRCA TCGA-AN-A0XU FAM111B SNP Silent 11 58893517 C G 24 43 BRCA TCGA-AN-A0XU CREBZF DEL Frame_Shift_Del 11 85375730 CCAACTCTCCTTCGTCG - 30 70 BRCA TCGA-AN-A0XU TYR SNP Missense_Mutation 11 88911483 G T 33 68 BRCA TCGA-AN-A0XU MAML2 SNP Missense_Mutation 11 95825480 G A 35 77 BRCA TCGA-AN-A0XU SETD1B DEL Frame_Shift_Del 12 122255181 TG - 55 44 BRCA TCGA-AN-A0XU VWF SNP Missense_Mutation 12 6078528 G T 44 58 BRCA TCGA-AN-A0XU KATNAL1 SNP Missense_Mutation 13 30854326 A T 2 88 BRCA TCGA-AN-A0XU KL SNP Missense_Mutation 13 33635059 A G 8 51 BRCA TCGA-AN-A0XU TSC22D1 SNP Missense_Mutation 13 45148403 G A 43 61 BRCA TCGA-AN-A0XU OR4K15 SNP Missense_Mutation 14 20444111 A T 10 83 BRCA TCGA-AN-A0XU TEP1 SNP Missense_Mutation 14 20873681 C T 29 51 BRCA TCGA-AN-A0XU SPTB SNP Missense_Mutation 14 65271779 A T 3 88 BRCA TCGA-AN-A0XU RASGRF1 SNP Missense_Mutation 15 79291119 C A 32 93 BRCA TCGA-AN-A0XU DNAH3 SNP Splice_site 16 20944829 C A 18 100 BRCA TCGA-AN-A0XU ITGAL SNP Missense_Mutation 16 30528336 C A 24 62 BRCA TCGA-AN-A0XU TEPP SNP Splice_site 16 58021301 C T 31 73 BRCA TCGA-AN-A0XU PKD1L2 SNP Missense_Mutation 16 81232651 C G 17 54 BRCA TCGA-AN-A0XU ATP2C2 SNP Missense_Mutation 16 84449123 C G 31 58 BRCA TCGA-AN-A0XU OR1D5 SNP Missense_Mutation 17 2966511 G A 47 62 BRCA TCGA-AN-A0XU OR1A1 SNP Missense_Mutation 17 3119462 C T 22 82 BRCA TCGA-AN-A0XU BRCA1 SNP Missense_Mutation 17 41201181 C A 18 76 BRCA TCGA-AN-A0XU HOXB2 SNP Missense_Mutation 17 46622059 G A 42 70 BRCA TCGA-AN-A0XU HOXB3 SNP Missense_Mutation 17 46629421 G A 40 61 BRCA TCGA-AN-A0XU SMG8 SNP Nonsense_Mutation 17 57288018 C A 18 66 BRCA TCGA-AN-A0XU KCNH6 SNP Missense_Mutation 17 61619620 G T 43 98 BRCA TCGA-AN-A0XU TP53 DEL Frame_Shift_Del 17 7577107 ACAGGCACAA - 10 53 BRCA TCGA-AN-A0XU SECTM1 SNP Nonsense_Mutation 17 80282641 C A 30 36 BRCA TCGA-AN-A0XU PIK3C3 SNP Missense_Mutation 18 39542488 C T 22 77 BRCA TCGA-AN-A0XU LOXHD1 SNP Missense_Mutation 18 44104856 C T 27 98 BRCA TCGA-AN-A0XU EPB41L3 SNP Missense_Mutation 18 5397152 G C 48 71 BRCA TCGA-AN-A0XU DOCK6 DEL Frame_Shift_Del 19 11348396 T - 51 85 BRCA TCGA-AN-A0XU DAND5 SNP Missense_Mutation 19 13084353 G C 44 50 BRCA TCGA-AN-A0XU ZNF626 DEL Frame_Shift_Del 19 20829141 TGTGCAG - 55 56 BRCA TCGA-AN-A0XU URI1 SNP Missense_Mutation 19 30505914 T A 50 56 BRCA TCGA-AN-A0XU LGI4 SNP Missense_Mutation 19 35625006 G A 45 85 BRCA TCGA-AN-A0XU WDR62 DEL In_Frame_Del 19 36593726 TCCTCTCAAGCC - 62 72 BRCA TCGA-AN-A0XU IGFL2 SNP Missense_Mutation 19 46663943 A T 11 64 BRCA TCGA-AN-A0XU PNMAL1 SNP Missense_Mutation 19 46973059 C T 31 69 BRCA TCGA-AN-A0XU MYH14 DEL Frame_Shift_Del 19 50771486 G - 35 69 BRCA TCGA-AN-A0XU C19orf70 SNP Splice_site 19 5679407 G C 34 63 BRCA TCGA-AN-A0XU ZNF543 SNP Missense_Mutation 19 57839308 G C 33 47 BRCA TCGA-AN-A0XU MARCO SNP Splice_Site 2 119727689 G A 36 73 BRCA TCGA-AN-A0XU KIF5C SNP Missense_Mutation 2 149864578 G C 34 51 BRCA TCGA-AN-A0XU SCN3A SNP Missense_Mutation 2 166032862 G A 39 70 BRCA TCGA-AN-A0XU XIRP2 SNP Missense_Mutation 2 168107363 C A 21 73 BRCA TCGA-AN-A0XU TMEFF2 SNP Missense_Mutation 2 192820999 A G 8 73 BRCA TCGA-AN-A0XU NRP2 SNP Missense_Mutation 2 206631527 G T 35 80 BRCA TCGA-AN-A0XU TRIP12 SNP Silent 2 230678609 G A 34 86 BRCA TCGA-AN-A0XU ATG16L1 SNP Missense_Mutation 2 234172686 A T 7 52 BRCA TCGA-AN-A0XU TMEM178A SNP Missense_Mutation 2 39934291 C A 18 81 BRCA TCGA-AN-A0XU SEMA4F SNP Missense_Mutation 2 74889932 G A 39 64 BRCA TCGA-AN-A0XU GGCX SNP Silent 2 85777243 C G 29 54 BRCA TCGA-AN-A0XU SYCP2 SNP Splice_Site 20 58467482 C A 32 74 BRCA TCGA-AN-A0XU DOPEY2 SNP Nonsense_Mutation 21 37612131 G A 47 96 BRCA TCGA-AN-A0XU CSNK1E SNP Missense_Mutation 22 38694802 T A 51 91 BRCA TCGA-AN-A0XU TNRC6B SNP Missense_Mutation 22 40662003 G A 40 75 BRCA TCGA-AN-A0XU MAGEA3 SNP Missense_Mutation 23 151935749 C T 19 45 BRCA TCGA-AN-A0XU CNKSR2 SNP Missense_Mutation 23 21627269 T G 51 52 BRCA TCGA-AN-A0XU PCDH19 SNP Missense_Mutation 23 99551519 G T 43 96 BRCA TCGA-AN-A0XU STAG1 SNP Missense_Mutation 3 136078104 T A 60 93 BRCA TCGA-AN-A0XU ESYT3 SNP Missense_Mutation 3 138183231 G C 33 54 BRCA TCGA-AN-A0XU TNIK SNP Silent 3 170819300 C T 24 55 BRCA TCGA-AN-A0XU KBTBD5 SNP Missense_Mutation 3 42733450 G T 36 90 BRCA TCGA-AN-A0XU ITIH4 DEL Frame_Shift_Del 3 52858309 C - 25 56 BRCA TCGA-AN-A0XU CCDC112 SNP Missense_Mutation 5 114603600 C G 30 80 BRCA TCGA-AN-A0XU LOC100287064 SNP Missense_Mutation 5 14653097 G T 41 55 BRCA TCGA-AN-A0XU AMACR SNP Missense_Mutation 5 33989557 A G 5 93 BRCA TCGA-AN-A0XU C6orf170 SNP Silent 6 121577341 C G 21 50 BRCA TCGA-AN-A0XU GJA1 SNP Missense_Mutation 6 121768943 A G 5 88 BRCA TCGA-AN-A0XU AHI1 SNP Silent 6 135787470 A T 15 52 BRCA TCGA-AN-A0XU CNKSR3 SNP Silent 6 154762480 G A 45 18 BRCA TCGA-AN-A0XU RPP40 SNP Missense_Mutation 6 5000125 C A 17 54 BRCA TCGA-AN-A0XU BAI3 SNP Missense_Mutation 6 69349109 C T 29 67 BRCA TCGA-AN-A0XU SLC17A5 SNP Splice_Site 6 74320122 C T 19 100 BRCA TCGA-AN-A0XU SLC35A1 SNP Silent 6 88216123 G T 44 45 BRCA TCGA-AN-A0XU ATXN7L1 SNP Missense_Mutation 7 105283455 G A 37 74 BRCA TCGA-AN-A0XU FLNC SNP Silent 7 128496688 C G 32 56 BRCA TCGA-AN-A0XU KEL SNP Missense_Mutation 7 142658026 C T 23 53 BRCA TCGA-AN-A0XU UBE3C DEL Frame_Shift_Del 7 157046642 TCCCAGGTAGTTGAAC - 62 57 BRCA TCGA-AN-A0XU INMT SNP Missense_Mutation 7 30791789 G A 44 50 BRCA TCGA-AN-A0XU MYO1G DEL Splice_site 7 45009012 G - 40 60 BRCA TCGA-AN-A0XU C7orf62 INS Frame_Shift_Ins 7 88423585 - AACATTTATAAACATTT 21 68 BRCA TCGA-AN-A0XU ZHX1 DEL In_Frame_Del 8 124265811 GTGCTTCAG - 48 99 BRCA TCGA-AN-A0XU CPSF1 SNP Missense_Mutation 8 145625789 G T 43 97 BRCA TCGA-AN-A0XU C9orf174 SNP Missense_Mutation 9 100136864 G A 37 71 BRCA TCGA-AN-A0XV RAB3GAP2 SNP Missense_Mutation 1 220340879 A G 14 52 BRCA TCGA-AN-A0XV GJA4 SNP Silent 1 35260003 C T 19 39 BRCA TCGA-AN-A0XV RAD54L SNP Missense_Mutation 1 46743834 C A 20 51 BRCA TCGA-AN-A0XV INADL DEL Frame_Shift_Del 1 62274159 AC - 10 81 BRCA TCGA-AN-A0XV ANKRD16 SNP Missense_Mutation 10 5930026 G A 41 93 BRCA TCGA-AN-A0XV BARX2 SNP Missense_Mutation 11 129306679 C T 31 95 BRCA TCGA-AN-A0XV MLEC SNP Splice_site 12 121132627 G T 44 85 BRCA TCGA-AN-A0XV CDK2AP1 SNP Missense_Mutation 12 123751751 G A 39 95 BRCA TCGA-AN-A0XV NEK5 SNP Missense_Mutation 13 52661583 C A 19 65 BRCA TCGA-AN-A0XV LOC100132247 SNP Missense_Mutation 16 22545853 C G 27 34 BRCA TCGA-AN-A0XV ITFG1 SNP Missense_Mutation 16 47252799 C A 22 83 BRCA TCGA-AN-A0XV GNAO1 SNP Silent 16 56388797 C T 19 44 BRCA TCGA-AN-A0XV CNTNAP4 SNP Silent 16 76528874 G A 38 45 BRCA TCGA-AN-A0XV SLC5A7 SNP Silent 2 108604635 G C 45 58 BRCA TCGA-AN-A0XV PSMD1 DEL Frame_Shift_Del 2 231927025 G - 40 100 BRCA TCGA-AN-A0XV CYP26B1 SNP Missense_Mutation 2 72361955 C T 27 97 BRCA TCGA-AN-A0XV FASTKD5 SNP Missense_Mutation 20 3127664 A C 6 49 BRCA TCGA-AN-A0XV C20orf173 SNP Splice_Site 20 34110500 C A 18 83 BRCA TCGA-AN-A0XV NCAM2 DEL Frame_Shift_Del 21 22782691 A - 5 46 BRCA TCGA-AN-A0XV FGD5 SNP Missense_Mutation 3 14861440 G A 47 75 BRCA TCGA-AN-A0XV IL17RD SNP Silent 3 57139978 G A 37 48 BRCA TCGA-AN-A0XV COL25A1 SNP Missense_Mutation 4 109740436 A G 7 89 BRCA TCGA-AN-A0XV LARP1B SNP Splice_site 4 129043387 G C 45 50 BRCA TCGA-AN-A0XV DHX15 SNP Missense_Mutation 4 24542562 A T 15 90 BRCA TCGA-AN-A0XV CEP120 SNP Nonsense_Mutation 5 122685675 G A 38 64 BRCA TCGA-AN-A0XV PCDHGA11 SNP Missense_Mutation 5 140801090 C T 19 48 BRCA TCGA-AN-A0XV MYO10 SNP Missense_Mutation 5 16701598 C G 28 56 BRCA TCGA-AN-A0XV ODZ2 SNP Silent 5 167545418 C T 27 58 BRCA TCGA-AN-A0XV HEATR7B2 SNP Missense_Mutation 5 41052602 C T 17 50 BRCA TCGA-AN-A0XV FASTKD3 SNP Missense_Mutation 5 7867647 C T 28 71 BRCA TCGA-AN-A0XV HACE1 SNP Missense_Mutation 6 105219210 T A 52 89 BRCA TCGA-AN-A0XV OPRM1 SNP Missense_Mutation 6 154412132 G T 47 100 BRCA TCGA-AN-A0XV GMDS SNP Missense_Mutation 6 2124961 C G 18 96 BRCA TCGA-AN-A0XV HDGFL1 SNP Silent 6 22569816 C T 19 59 BRCA TCGA-AN-A0XV OR2B3 SNP Nonsense_Mutation 6 29055016 C A 30 50 BRCA TCGA-AN-A0XV MLL3 SNP Nonsense_Mutation 7 151945474 G C 45 55 BRCA TCGA-AN-A0XV NFE2L3 SNP Silent 7 26224284 T C 58 50 BRCA TCGA-AN-A0XV CPNE3 SNP Splice_Site 8 87559937 A C 15 90 BRCA TCGA-AN-A0XV CNTFR SNP Silent 9 34552251 G A 38 55 BRCA TCGA-AN-A0XW CTTNBP2NL SNP Missense_Mutation 1 112999921 C T 29 71 BRCA TCGA-AN-A0XW SYCP1 SNP Missense_Mutation 1 115420781 G C 33 60 BRCA TCGA-AN-A0XW WDR3 SNP Missense_Mutation 1 118485115 C G 32 65 BRCA TCGA-AN-A0XW SETDB1 SNP Missense_Mutation 1 150933151 G C 33 60 BRCA TCGA-AN-A0XW THEM5 SNP Missense_Mutation 1 151820278 C G 32 58 BRCA TCGA-AN-A0XW S100A13 SNP Silent 1 153598799 G C 45 65 BRCA TCGA-AN-A0XW NUP210L SNP Missense_Mutation 1 154072563 G C 33 47 BRCA TCGA-AN-A0XW SHC1 SNP Missense_Mutation 1 154941864 G C 45 78 BRCA TCGA-AN-A0XW C1orf85 SNP Missense_Mutation 1 156262865 C A 32 60 BRCA TCGA-AN-A0XW ETV3 SNP Missense_Mutation 1 157106111 C T 32 69 BRCA TCGA-AN-A0XW SPTA1 SNP Silent 1 158654937 G A 33 40 BRCA TCGA-AN-A0XW TNFSF4 SNP Nonsense_Mutation 1 173157704 G C 45 59 BRCA TCGA-AN-A0XW C1orf14 SNP Missense_Mutation 1 182869343 C T 29 79 BRCA TCGA-AN-A0XW LAMC1 SNP Missense_Mutation 1 183094653 C G 32 84 BRCA TCGA-AN-A0XW HMCN1 SNP Missense_Mutation 1 186113455 G A 46 100 BRCA TCGA-AN-A0XW CFHR5 SNP Silent 1 196963292 G A 45 60 BRCA TCGA-AN-A0XW NAV1 SNP Missense_Mutation 1 201759887 C G 32 81 BRCA TCGA-AN-A0XW LMOD1 SNP Silent 1 201868371 G C 45 65 BRCA TCGA-AN-A0XW CNTN2 SNP Missense_Mutation 1 205031020 C G 31 73 BRCA TCGA-AN-A0XW AVPR1B SNP Silent 1 206231046 C T 29 53 BRCA TCGA-AN-A0XW HLX SNP Silent 1 221054582 C G 32 52 BRCA TCGA-AN-A0XW DNAH14 SNP Silent 1 225334811 G T 45 55 BRCA TCGA-AN-A0XW EPHX1 SNP Silent 1 226019512 C T 29 49 BRCA TCGA-AN-A0XW SIPA1L2 SNP Missense_Mutation 1 232649933 C T 30 100 BRCA TCGA-AN-A0XW RYR2 SNP Missense_Mutation 1 237713931 G A 37 99 BRCA TCGA-AN-A0XW ZNF692 SNP Missense_Mutation 1 249151646 G A 45 64 BRCA TCGA-AN-A0XW CNKSR1 SNP Missense_Mutation 1 26510895 C T 32 64 BRCA TCGA-AN-A0XW CNKSR1 SNP Silent 1 26513679 C T 29 52 BRCA TCGA-AN-A0XW CNKSR1 SNP Silent 1 26514740 C G 29 55 BRCA TCGA-AN-A0XW CATSPER4 SNP Silent 1 26517876 C T 29 53 BRCA TCGA-AN-A0XW IL23R SNP Nonsense_Mutation 1 67666482 C G 29 60 BRCA TCGA-AN-A0XW DMBT1 SNP Missense_Mutation 10 124380755 C T 23 52 BRCA TCGA-AN-A0XW KIF5B SNP Nonsense_Mutation 10 32322814 C A 29 84 BRCA TCGA-AN-A0XW ZNF22 SNP Silent 10 45499194 C T 29 51 BRCA TCGA-AN-A0XW PTEN SNP Missense_Mutation 10 89692900 G C 35 83 BRCA TCGA-AN-A0XW MUC2 SNP Silent 11 1092240 G A 33 54 BRCA TCGA-AN-A0XW SIK3 SNP Nonsense_Mutation 11 116732606 G A 45 82 BRCA TCGA-AN-A0XW OR10G8 SNP Silent 11 123901064 C T 31 47 BRCA TCGA-AN-A0XW FBXO3 SNP Missense_Mutation 11 33790504 G C 33 66 BRCA TCGA-AN-A0XW TRAF6 SNP Missense_Mutation 11 36512023 G C 45 97 BRCA TCGA-AN-A0XW NUP160 SNP Missense_Mutation 11 47828648 G C 33 81 BRCA TCGA-AN-A0XW P2RX3 SNP Silent 11 57137374 G A 45 58 BRCA TCGA-AN-A0XW OR4D10 SNP Missense_Mutation 11 59245488 G C 45 66 BRCA TCGA-AN-A0XW SSH3 SNP Missense_Mutation 11 67077004 G C 45 66 BRCA TCGA-AN-A0XW UHRF1BP1L SNP Missense_Mutation 12 100451418 C T 29 95 BRCA TCGA-AN-A0XW GNPTAB SNP Missense_Mutation 12 102153831 C T 30 98 BRCA TCGA-AN-A0XW KLRD1 SNP Splice_site 12 10460676 C T 29 49 BRCA TCGA-AN-A0XW FBXO21 SNP Silent 12 117603392 C T 29 50 BRCA TCGA-AN-A0XW UNC119B SNP Missense_Mutation 12 121157824 G A 47 100 BRCA TCGA-AN-A0XW GTF2H3 SNP Silent 12 124144425 C T 32 99 BRCA TCGA-AN-A0XW TMEM132D SNP Nonsense_Mutation 12 129563234 T A 64 76 BRCA TCGA-AN-A0XW SLC15A5 SNP Missense_Mutation 12 16430463 C T 29 97 BRCA TCGA-AN-A0XW PIK3C2G SNP Missense_Mutation 12 18499655 G C 33 58 BRCA TCGA-AN-A0XW MRPS35 SNP Missense_Mutation 12 27877070 C T 29 82 BRCA TCGA-AN-A0XW KRT84 SNP Missense_Mutation 12 52778990 C G 30 93 BRCA TCGA-AN-A0XW KRT6A SNP Missense_Mutation 12 52883849 C T 31 77 BRCA TCGA-AN-A0XW KRT71 SNP Silent 12 52943869 C T 29 67 BRCA TCGA-AN-A0XW ESYT1 SNP Silent 12 56522358 C T 31 57 BRCA TCGA-AN-A0XW OTOGL SNP Missense_Mutation 12 80626730 C G 32 55 BRCA TCGA-AN-A0XW TMTC2 SNP Silent 12 83289848 C T 29 48 BRCA TCGA-AN-A0XW LOC642846 SNP Missense_Mutation 12 9440928 G C 45 74 BRCA TCGA-AN-A0XW FAM155A SNP Missense_Mutation 13 108518200 C T 30 97 BRCA TCGA-AN-A0XW MYO16 SNP Missense_Mutation 13 109777624 G A 45 96 BRCA TCGA-AN-A0XW RASA3 SNP Missense_Mutation 13 114781703 C G 29 49 BRCA TCGA-AN-A0XW MTMR6 SNP Missense_Mutation 13 25827981 G A 33 70 BRCA TCGA-AN-A0XW FRY SNP Nonsense_Mutation 13 32721440 C T 31 100 BRCA TCGA-AN-A0XW SPG20 SNP Missense_Mutation 13 36888497 C G 32 53 BRCA TCGA-AN-A0XW HTR2A SNP Missense_Mutation 13 47409694 C A 29 63 BRCA TCGA-AN-A0XW RTL1 SNP Missense_Mutation 14 101347967 C A 29 46 BRCA TCGA-AN-A0XW ZNF219 SNP Missense_Mutation 14 21559617 G C 33 97 BRCA TCGA-AN-A0XW SLC22A17 SNP Silent 14 23816808 C T 21 57 BRCA TCGA-AN-A0XW ZFHX2 SNP Silent 14 24003176 G C 45 60 BRCA TCGA-AN-A0XW GMFB SNP Nonsense_Mutation 14 54947649 G A 45 84 BRCA TCGA-AN-A0XW KTN1 SNP Missense_Mutation 14 56116507 C T 32 84 BRCA TCGA-AN-A0XW C14orf38 SNP Missense_Mutation 14 60041705 C T 28 64 BRCA TCGA-AN-A0XW KCNH5 SNP Silent 14 63473099 G A 33 61 BRCA TCGA-AN-A0XW RDH11 SNP Nonsense_Mutation 14 68156953 G A 47 54 BRCA TCGA-AN-A0XW ZC2HC1C SNP Silent 14 75537978 G C 45 48 BRCA TCGA-AN-A0XW C14orf102 SNP Missense_Mutation 14 90778838 C G 29 94 BRCA TCGA-AN-A0XW SERPINA11 SNP Nonsense_Mutation 14 94912879 C A 29 60 BRCA TCGA-AN-A0XW TUBGCP5 SNP Missense_Mutation 15 22836070 G A 45 97 BRCA TCGA-AN-A0XW GABRB3 SNP Missense_Mutation 15 26866582 C T 29 100 BRCA TCGA-AN-A0XW NDNL2 SNP Silent 15 29561244 G A 45 48 BRCA TCGA-AN-A0XW RYR3 SNP Silent 15 33928729 C T 31 46 BRCA TCGA-AN-A0XW MGA SNP Silent 15 42057208 C G 32 47 BRCA TCGA-AN-A0XW MFAP1 SNP Missense_Mutation 15 44105315 C G 30 100 BRCA TCGA-AN-A0XW SEMA6D SNP Splice_Site 15 48059233 G C 33 97 BRCA TCGA-AN-A0XW FAM214A SNP Missense_Mutation 15 52901363 C G 32 86 BRCA TCGA-AN-A0XW UACA SNP Missense_Mutation 15 70959869 C G 29 85 BRCA TCGA-AN-A0XW PARP6 SNP Missense_Mutation 15 72545819 C G 32 78 BRCA TCGA-AN-A0XW PML SNP Silent 15 74324915 C T 23 45 BRCA TCGA-AN-A0XW IGF1R SNP Missense_Mutation 15 99478099 G A 45 96 BRCA TCGA-AN-A0XW DNAH3 SNP Silent 16 21078621 C T 32 62 BRCA TCGA-AN-A0XW ZKSCAN2 SNP Silent 16 25251806 C T 32 61 BRCA TCGA-AN-A0XW CLUAP1 SNP Missense_Mutation 16 3558457 C G 32 61 BRCA TCGA-AN-A0XW C16orf71 SNP Translation_Start_Site 16 4786498 C G 32 59 BRCA TCGA-AN-A0XW HYDIN SNP Missense_Mutation 16 70969882 C T 29 41 BRCA TCGA-AN-A0XW GLG1 SNP Missense_Mutation 16 74502875 C T 27 100 BRCA TCGA-AN-A0XW ABAT SNP Missense_Mutation 16 8868872 G A 45 76 BRCA TCGA-AN-A0XW MYH4 SNP Silent 17 10366411 G C 45 40 BRCA TCGA-AN-A0XW DNAH9 SNP Missense_Mutation 17 11522991 C G 32 72 BRCA TCGA-AN-A0XW TOP3A SNP Nonsense_Mutation 17 18205698 C A 29 72 BRCA TCGA-AN-A0XW NF1 SNP Missense_Mutation 17 29667654 C G 29 77 BRCA TCGA-AN-A0XW NBR1 SNP Splice_site 17 41362092 G A 45 95 BRCA TCGA-AN-A0XW ACBD4 SNP Missense_Mutation 17 43214125 G A 45 74 BRCA TCGA-AN-A0XW XYLT2 SNP Silent 17 48437502 G A 45 59 BRCA TCGA-AN-A0XW RSAD1 SNP Missense_Mutation 17 48557311 G C 41 83 BRCA TCGA-AN-A0XW CACNA1G SNP Nonsense_Mutation 17 48650139 C G 29 72 BRCA TCGA-AN-A0XW LPO SNP Missense_Mutation 17 56321423 T G 56 72 BRCA TCGA-AN-A0XW MED13 SNP Missense_Mutation 17 60040145 G A 41 95 BRCA TCGA-AN-A0XW BCL6B SNP Missense_Mutation 17 6928012 G C 37 67 BRCA TCGA-AN-A0XW TTYH2 SNP Missense_Mutation 17 72249933 G C 33 53 BRCA TCGA-AN-A0XW NAT9 SNP Missense_Mutation 17 72767888 C T 32 65 BRCA TCGA-AN-A0XW EVPL SNP Missense_Mutation 17 74004251 C G 32 85 BRCA TCGA-AN-A0XW ENPP7 SNP Silent 17 77711776 G A 38 45 BRCA TCGA-AN-A0XW TRAPPC1 SNP Missense_Mutation 17 7834854 G C 37 96 BRCA TCGA-AN-A0XW TSPAN10 SNP Silent 17 79609453 G A 33 51 BRCA TCGA-AN-A0XW PTPN2 SNP Missense_Mutation 18 12836858 C G 29 99 BRCA TCGA-AN-A0XW GREB1L SNP Silent 18 18963557 C T 29 53 BRCA TCGA-AN-A0XW NPC1 SNP Splice_site 18 21127971 C G 32 99 BRCA TCGA-AN-A0XW DNMT1 SNP Silent 19 10260162 G A 33 46 BRCA TCGA-AN-A0XW ZNF700 SNP Nonsense_Mutation 19 12059255 C G 29 66 BRCA TCGA-AN-A0XW OR7C1 SNP Silent 19 14910073 C G 29 43 BRCA TCGA-AN-A0XW OR10H4 SNP Silent 19 16060444 G A 45 52 BRCA TCGA-AN-A0XW ZNF254 SNP Silent 19 24309129 G A 45 59 BRCA TCGA-AN-A0XW S1PR4 SNP Missense_Mutation 19 3179742 G A 40 66 BRCA TCGA-AN-A0XW CLC SNP Missense_Mutation 19 40225039 C G 18 47 BRCA TCGA-AN-A0XW ITPKC SNP Missense_Mutation 19 41223786 C G 30 77 BRCA TCGA-AN-A0XW CYP2A13 SNP Missense_Mutation 19 41601698 G A 33 80 BRCA TCGA-AN-A0XW CIC SNP Silent 19 42791541 C G 29 51 BRCA TCGA-AN-A0XW ZNF224 SNP Missense_Mutation 19 44611829 C G 29 77 BRCA TCGA-AN-A0XW SYMPK SNP Missense_Mutation 19 46324658 C T 29 93 BRCA TCGA-AN-A0XW PLEKHA4 SNP Missense_Mutation 19 49348692 G A 41 76 BRCA TCGA-AN-A0XW PPFIA3 SNP Missense_Mutation 19 49646233 C T 31 81 BRCA TCGA-AN-A0XW PNKP SNP Missense_Mutation 19 50364584 G C 33 64 BRCA TCGA-AN-A0XW ZNF677 SNP Missense_Mutation 19 53740966 C G 32 59 BRCA TCGA-AN-A0XW TFPT SNP Missense_Mutation 19 54610364 G C 33 57 BRCA TCGA-AN-A0XW LAIR1 SNP Missense_Mutation 19 54871673 G C 33 47 BRCA TCGA-AN-A0XW ZNF304 SNP Missense_Mutation 19 57868151 G C 33 51 BRCA TCGA-AN-A0XW INSR SNP Missense_Mutation 19 7163183 G A 45 79 BRCA TCGA-AN-A0XW KIAA1543 SNP Silent 19 7676771 G A 33 58 BRCA TCGA-AN-A0XW AFF3 SNP Missense_Mutation 2 100209770 C G 30 84 BRCA TCGA-AN-A0XW GCC2 SNP Missense_Mutation 2 109088057 C A 29 79 BRCA TCGA-AN-A0XW GREB1 SNP Silent 2 11720882 C T 29 66 BRCA TCGA-AN-A0XW TANK SNP Missense_Mutation 2 162087994 C G 32 61 BRCA TCGA-AN-A0XW TTN SNP Missense_Mutation 2 179584439 C T 32 50 BRCA TCGA-AN-A0XW STK17B SNP Missense_Mutation 2 197002326 C T 29 79 BRCA TCGA-AN-A0XW TYW5 SNP Silent 2 200797832 G C 41 50 BRCA TCGA-AN-A0XW SGOL2 SNP Missense_Mutation 2 201437093 G C 33 50 BRCA TCGA-AN-A0XW NBEAL1 SNP Missense_Mutation 2 203990152 G C 33 57 BRCA TCGA-AN-A0XW APOB SNP Missense_Mutation 2 21231741 C G 32 69 BRCA TCGA-AN-A0XW ATIC INS Frame_Shift_Ins 2 216197123 - A 41 100 BRCA TCGA-AN-A0XW CXCR7 SNP Missense_Mutation 2 237489685 G A 45 78 BRCA TCGA-AN-A0XW LRRFIP1 SNP Missense_Mutation 2 238664814 G C 33 88 BRCA TCGA-AN-A0XW HDLBP SNP Missense_Mutation 2 242186244 C G 32 100 BRCA TCGA-AN-A0XW CENPO SNP Silent 2 25039532 C A 30 52 BRCA TCGA-AN-A0XW C2orf16 SNP Missense_Mutation 2 27803414 G C 33 51 BRCA TCGA-AN-A0XW FOSL2 SNP Missense_Mutation 2 28626999 C T 29 98 BRCA TCGA-AN-A0XW BIRC6 SNP Missense_Mutation 2 32836564 G A 48 98 BRCA TCGA-AN-A0XW CYP1B1 SNP Missense_Mutation 2 38298053 G C 33 83 BRCA TCGA-AN-A0XW ERLEC1 SNP Missense_Mutation 2 54014442 G A 37 64 BRCA TCGA-AN-A0XW DNAH6 SNP Missense_Mutation 2 84880876 G A 45 96 BRCA TCGA-AN-A0XW MRPL30 SNP Missense_Mutation 2 99811355 G C 33 45 BRCA TCGA-AN-A0XW SLC4A11 SNP Missense_Mutation 20 3210899 C G 30 99 BRCA TCGA-AN-A0XW CEP250 SNP Missense_Mutation 20 34082384 G A 41 53 BRCA TCGA-AN-A0XW IFNAR1 SNP Silent 21 34717589 C T 29 34 BRCA TCGA-AN-A0XW TTC3 SNP Silent 21 38516840 C T 29 42 BRCA TCGA-AN-A0XW HMGN1 SNP Silent 21 40720242 C G 31 48 BRCA TCGA-AN-A0XW POFUT2 SNP Silent 21 46697010 G A 40 50 BRCA TCGA-AN-A0XW PRMT2 SNP Nonsense_Mutation 21 48080771 C G 29 79 BRCA TCGA-AN-A0XW CABIN1 SNP Nonsense_Mutation 22 24515498 G T 41 99 BRCA TCGA-AN-A0XW NF2 SNP Silent 22 30077506 G C 45 47 BRCA TCGA-AN-A0XW NF2 SNP Missense_Mutation 22 30077516 G A 41 99 BRCA TCGA-AN-A0XW PES1 SNP Missense_Mutation 22 30975192 C T 32 91 BRCA TCGA-AN-A0XW DRG1 SNP Missense_Mutation 22 31822619 C G 32 52 BRCA TCGA-AN-A0XW APOL2 SNP Missense_Mutation 22 36624084 G C 33 69 BRCA TCGA-AN-A0XW RAC2 SNP Silent 22 37628023 G A 45 58 BRCA TCGA-AN-A0XW TCF20 SNP Missense_Mutation 22 42610881 G C 33 82 BRCA TCGA-AN-A0XW TLR8 SNP Missense_Mutation 23 12938975 G A 41 48 BRCA TCGA-AN-A0XW FMR1NB SNP Silent 23 147063138 C T 29 46 BRCA TCGA-AN-A0XW MAGEA4 SNP Silent 23 151092820 G A 45 38 BRCA TCGA-AN-A0XW MAGEA4 SNP Missense_Mutation 23 151092833 G A 45 62 BRCA TCGA-AN-A0XW GABRQ SNP Silent 23 151821498 G A 36 45 BRCA TCGA-AN-A0XW PNCK SNP Missense_Mutation 23 152937598 G A 33 48 BRCA TCGA-AN-A0XW GPR64 SNP Missense_Mutation 23 19027881 C T 29 61 BRCA TCGA-AN-A0XW FAM47C SNP Missense_Mutation 23 37026598 A G 11 53 BRCA TCGA-AN-A0XW HUWE1 SNP Missense_Mutation 23 53661226 A T 3 89 BRCA TCGA-AN-A0XW KIF4A SNP Missense_Mutation 23 69615617 G C 33 93 BRCA TCGA-AN-A0XW KAL1 SNP Missense_Mutation 23 8591691 T G 52 37 BRCA TCGA-AN-A0XW MYH15 SNP Missense_Mutation 3 108112937 C T 29 67 BRCA TCGA-AN-A0XW TF SNP Missense_Mutation 3 133476751 G C 45 46 BRCA TCGA-AN-A0XW PCOLCE2 SNP Nonsense_Mutation 3 142537266 G A 38 72 BRCA TCGA-AN-A0XW PEX5L SNP Missense_Mutation 3 179597907 C A 29 70 BRCA TCGA-AN-A0XW CRTAP SNP Missense_Mutation 3 33175749 G A 45 82 BRCA TCGA-AN-A0XW MYRIP SNP Missense_Mutation 3 40291811 G T 41 57 BRCA TCGA-AN-A0XW ZNF197 SNP Missense_Mutation 3 44685697 G C 33 63 BRCA TCGA-AN-A0XW CCR2 SNP Missense_Mutation 3 46399964 C T 32 55 BRCA TCGA-AN-A0XW CDC25A SNP Missense_Mutation 3 48224485 C G 30 50 BRCA TCGA-AN-A0XW NCKIPSD SNP Missense_Mutation 3 48719900 C T 29 91 BRCA TCGA-AN-A0XW CACNA2D2 SNP Splice_site 3 50415439 C G 21 99 BRCA TCGA-AN-A0XW GLYCTK SNP Missense_Mutation 3 52327124 G C 48 50 BRCA TCGA-AN-A0XW ERC2 SNP Missense_Mutation 3 56173584 C G 32 100 BRCA TCGA-AN-A0XW FAM116A SNP Nonsense_Mutation 3 57632137 G A 45 100 BRCA TCGA-AN-A0XW CADPS SNP Missense_Mutation 3 62423808 C T 29 100 BRCA TCGA-AN-A0XW ROBO1 SNP Missense_Mutation 3 78710205 G C 45 58 BRCA TCGA-AN-A0XW GBE1 SNP Silent 3 81692075 G A 41 53 BRCA TCGA-AN-A0XW C4orf3 SNP Missense_Mutation 4 120221638 C G 31 58 BRCA TCGA-AN-A0XW BOD1L1 SNP Missense_Mutation 4 13601173 C T 32 49 BRCA TCGA-AN-A0XW CPEB2 SNP Silent 4 15054051 C G 32 55 BRCA TCGA-AN-A0XW C4orf40 SNP Missense_Mutation 4 71024408 G C 45 51 BRCA TCGA-AN-A0XW C4orf35 SNP Missense_Mutation 4 71201591 G A 33 61 BRCA TCGA-AN-A0XW WDFY3 SNP Silent 4 85758097 C T 32 83 BRCA TCGA-AN-A0XW MCC SNP Silent 5 112406916 G T 45 59 BRCA TCGA-AN-A0XW DMXL1 SNP Nonsense_Mutation 5 118482538 C G 29 48 BRCA TCGA-AN-A0XW DMXL1 SNP Missense_Mutation 5 118569138 G C 45 66 BRCA TCGA-AN-A0XW SNX2 SNP Missense_Mutation 5 122154620 G C 41 100 BRCA TCGA-AN-A0XW ZNF608 SNP Missense_Mutation 5 124080411 G A 33 85 BRCA TCGA-AN-A0XW RAD50 SNP Missense_Mutation 5 131925407 G A 45 96 BRCA TCGA-AN-A0XW HSPA4 SNP Missense_Mutation 5 132403197 C G 32 76 BRCA TCGA-AN-A0XW ETF1 SNP Missense_Mutation 5 137846256 C G 32 86 BRCA TCGA-AN-A0XW CTNNA1 SNP Missense_Mutation 5 138223329 G C 45 99 BRCA TCGA-AN-A0XW PCDHA13 SNP Silent 5 140358575 G C 45 51 BRCA TCGA-AN-A0XW PCDHB8 SNP Silent 5 140560003 C T 29 50 BRCA TCGA-AN-A0XW PCDHGA11 SNP Missense_Mutation 5 140801497 G C 37 99 BRCA TCGA-AN-A0XW ARHGAP26 SNP Missense_Mutation 5 142283177 G C 45 98 BRCA TCGA-AN-A0XW PCYOX1L SNP Missense_Mutation 5 148743738 G T 33 88 BRCA TCGA-AN-A0XW LMAN2 SNP Missense_Mutation 5 176778543 G C 33 59 BRCA TCGA-AN-A0XW C7 SNP Missense_Mutation 5 40936479 C T 32 64 BRCA TCGA-AN-A0XW ZNF131 SNP Missense_Mutation 5 43161888 G C 41 67 BRCA TCGA-AN-A0XW CMYA5 SNP Missense_Mutation 5 79032398 G A 33 57 BRCA TCGA-AN-A0XW ZCCHC9 SNP Missense_Mutation 5 80600664 G C 45 74 BRCA TCGA-AN-A0XW ASCC3 SNP Missense_Mutation 6 101054655 C G 29 88 BRCA TCGA-AN-A0XW SYNE1 SNP Missense_Mutation 6 152671773 C T 30 77 BRCA TCGA-AN-A0XW PLG SNP Silent 6 161128786 G A 41 51 BRCA TCGA-AN-A0XW PLG SNP Missense_Mutation 6 161160215 G C 33 87 BRCA TCGA-AN-A0XW KIF13A SNP Missense_Mutation 6 17855684 G C 33 100 BRCA TCGA-AN-A0XW HIST1H2AB SNP Missense_Mutation 6 26033520 C T 30 99 BRCA TCGA-AN-A0XW HLA-G SNP Missense_Mutation 6 29797308 G A 47 55 BRCA TCGA-AN-A0XW FTSJD2 SNP Splice_site 6 37447030 C T 29 82 BRCA TCGA-AN-A0XW IRF4 SNP Missense_Mutation 6 394891 G T 38 100 BRCA TCGA-AN-A0XW DDX43 SNP Missense_Mutation 6 74104715 G T 41 70 BRCA TCGA-AN-A0XW MOSPD3 SNP Silent 7 100212575 C G 30 50 BRCA TCGA-AN-A0XW MUC17 SNP Nonsense_Mutation 7 100678770 C G 29 51 BRCA TCGA-AN-A0XW FLNC SNP Missense_Mutation 7 128491678 C G 29 78 BRCA TCGA-AN-A0XW MEST SNP Missense_Mutation 7 130140330 C G 18 89 BRCA TCGA-AN-A0XW EZH2 SNP Nonsense_Mutation 7 148508733 G C 45 100 BRCA TCGA-AN-A0XW TMEM196 SNP Silent 7 19761719 C G 29 51 BRCA TCGA-AN-A0XW HOXA2 SNP Missense_Mutation 7 27140466 G A 45 95 BRCA TCGA-AN-A0XW STK17A SNP Missense_Mutation 7 43663366 G C 45 52 BRCA TCGA-AN-A0XW ABCB4 SNP Silent 7 87042989 C T 29 53 BRCA TCGA-AN-A0XW C7orf62 SNP Missense_Mutation 7 88423641 C G 29 80 BRCA TCGA-AN-A0XW BAIAP2L1 SNP Silent 7 97933661 G A 39 3 BRCA TCGA-AN-A0XW EIF3E SNP Missense_Mutation 8 109215698 C T 32 98 BRCA TCGA-AN-A0XW TTC35 SNP Silent 8 109455911 C T 19 63 BRCA TCGA-AN-A0XW COL14A1 SNP Missense_Mutation 8 121256230 C T 30 81 BRCA TCGA-AN-A0XW FER1L6 SNP Missense_Mutation 8 125035808 G A 46 100 BRCA TCGA-AN-A0XW KIAA0196 SNP Silent 8 126073342 C T 29 47 BRCA TCGA-AN-A0XW ZC3H3 SNP Missense_Mutation 8 144621122 A C 11 50 BRCA TCGA-AN-A0XW MYOM2 SNP Missense_Mutation 8 2000284 C A 30 56 BRCA TCGA-AN-A0XW FSBP SNP Nonsense_Mutation 8 95423541 G C 45 50 BRCA TCGA-AN-A0XW C9orf174 SNP Missense_Mutation 9 100074413 G C 33 52 BRCA TCGA-AN-A0XW FKTN SNP Missense_Mutation 9 108370197 G C 45 91 BRCA TCGA-AN-A0XW ZNF462 SNP Missense_Mutation 9 109687510 C G 30 66 BRCA TCGA-AN-A0XW SVEP1 SNP Missense_Mutation 9 113233667 G A 45 97 BRCA TCGA-AN-A0XW C5 SNP Missense_Mutation 9 123779994 C T 30 90 BRCA TCGA-AN-A0XW CNTRL SNP Silent 9 123880758 G A 33 60 BRCA TCGA-AN-A0XW RC3H2 SNP Nonsense_Mutation 9 125616341 G A 45 74 BRCA TCGA-AN-A0XW PKN3 SNP Nonsense_Mutation 9 131476875 G T 33 79 BRCA TCGA-AN-A0XW PKN3 SNP Missense_Mutation 9 131477131 G A 34 62 BRCA TCGA-AN-A0XW PKN3 SNP Missense_Mutation 9 131479161 G A 45 92 BRCA TCGA-AN-A0XW TMEM8C SNP Silent 9 136380724 C T 32 61 BRCA TCGA-AN-A0XW NTRK2 SNP Missense_Mutation 9 87342871 G A 37 62 BRCA TCGA-AN-A0XW IARS SNP Missense_Mutation 9 95033329 C G 29 51 BRCA TCGA-AO-A03L PYHIN1 SNP Missense_Mutation 1 158912143 A T 1 48 BRCA TCGA-AO-A03L PRRX1 SNP Nonsense_Mutation 1 170695522 G A 43 94 BRCA TCGA-AO-A03L MCOLN3 SNP Missense_Mutation 1 85491733 T G 56 49 BRCA TCGA-AO-A03L KRT1 SNP Missense_Mutation 12 53072333 G A 39 61 BRCA TCGA-AO-A03L PTPRB SNP Missense_Mutation 12 71029633 G T 46 88 BRCA TCGA-AO-A03L UBN1 SNP Missense_Mutation 16 4920242 G A 36 67 BRCA TCGA-AO-A03L TP53 SNP Splice_Site 17 7577498 C T 18 92 BRCA TCGA-AO-A03L SERPINB8 SNP Missense_Mutation 18 61654433 C A 25 77 BRCA TCGA-AO-A03L KCNA7 DEL Frame_Shift_Del 19 49573837 AC - 10 87 BRCA TCGA-AO-A03L KLF11 SNP Missense_Mutation 2 10188252 A G 4 56 BRCA TCGA-AO-A03L XRN2 SNP Missense_Mutation 20 21307234 G A 47 97 BRCA TCGA-AO-A03L PAK7 SNP Silent 20 9520175 T C 51 39 BRCA TCGA-AO-A03L ESX1 SNP Silent 23 103499462 G A 37 34 BRCA TCGA-AO-A03L MECP2 SNP Missense_Mutation 23 153296385 C G 32 67 BRCA TCGA-AO-A03L DDX3X SNP Missense_Mutation 23 41201888 C T 21 82 BRCA TCGA-AO-A03L CBLB SNP Missense_Mutation 3 105572448 T C 49 92 BRCA TCGA-AO-A03L GOLGB1 SNP Missense_Mutation 3 121410367 G C 33 59 BRCA TCGA-AO-A03L PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA TCGA-AO-A03L SETD7 SNP Splice_site 4 140450374 C T 30 98 BRCA TCGA-AO-A03L ANK1 SNP Missense_Mutation 8 41554016 G A 40 86 BRCA TCGA-AO-A03L LOC642406 SNP Missense_Mutation 9 40582267 C T 31 53 BRCA TCGA-AO-A03N NOTCH2 SNP Missense_Mutation 1 120484236 G C 33 77 BRCA TCGA-AO-A03N HRNR SNP Missense_Mutation 1 152191378 A C 8 38 BRCA TCGA-AO-A03N DCST1 SNP Missense_Mutation 1 155018896 G C 41 80 BRCA TCGA-AO-A03N RCSD1 SNP Silent 1 167666641 C T 19 19 BRCA TCGA-AO-A03N KIF14 SNP Missense_Mutation 1 200584610 G T 45 75 BRCA TCGA-AO-A03N ECE1 SNP Missense_Mutation 1 21599264 C T 29 99 BRCA TCGA-AO-A03N PCNXL2 SNP Missense_Mutation 1 233388221 C G 32 42 BRCA TCGA-AO-A03N LYST SNP Missense_Mutation 1 235969927 G A 41 68 BRCA TCGA-AO-A03N C1orf101 SNP Missense_Mutation 1 244681976 C G 32 42 BRCA TCGA-AO-A03N KIF26B SNP Missense_Mutation 1 245861453 C T 32 96 BRCA TCGA-AO-A03N KLHL17 DEL Frame_Shift_Del 1 898155 GGTGAGG - 47 59 BRCA TCGA-AO-A03N GSTO1 SNP Silent 10 106014943 C T 30 54 BRCA TCGA-AO-A03N WDR37 SNP Missense_Mutation 10 1118202 C T 19 72 BRCA TCGA-AO-A03N LOC100288295 SNP Missense_Mutation 10 69571224 C G 32 52 BRCA TCGA-AO-A03N SRPR SNP Missense_Mutation 11 126136666 C A 32 48 BRCA TCGA-AO-A03N ETS1 SNP Missense_Mutation 11 128332356 C T 27 100 BRCA TCGA-AO-A03N MS4A14 SNP Missense_Mutation 11 60183854 G C 41 76 BRCA TCGA-AO-A03N OR6A2 SNP Missense_Mutation 11 6816144 G A 37 64 BRCA TCGA-AO-A03N LRRC32 SNP Silent 11 76372514 G C 41 40 BRCA TCGA-AO-A03N GAB2 SNP Missense_Mutation 11 77930333 C G 24 63 BRCA TCGA-AO-A03N TAS2R42 SNP Silent 12 11338818 G A 33 49 BRCA TCGA-AO-A03N ANAPC5 SNP Missense_Mutation 12 121757513 C G 32 95 BRCA TCGA-AO-A03N NOC4L SNP Splice_site 12 132636742 G T 35 62 BRCA TCGA-AO-A03N C12orf36 SNP Missense_Mutation 12 13529218 C T 31 49 BRCA TCGA-AO-A03N RERG SNP Missense_Mutation 12 15262253 C T 32 97 BRCA TCGA-AO-A03N ASUN SNP Silent 12 27068941 C G 30 59 BRCA TCGA-AO-A03N FKBP11 SNP Missense_Mutation 12 49315850 G A 45 65 BRCA TCGA-AO-A03N KRT82 SNP Silent 12 52795130 G A 40 37 BRCA TCGA-AO-A03N PPP1R1A SNP Missense_Mutation 12 54974805 C T 31 54 BRCA TCGA-AO-A03N USPL1 SNP Silent 13 31233476 C T 32 58 BRCA TCGA-AO-A03N KL SNP Missense_Mutation 13 33638277 C G 30 63 BRCA TCGA-AO-A03N TGDS SNP Missense_Mutation 13 95232200 A G 2 58 BRCA TCGA-AO-A03N CLEC14A SNP Missense_Mutation 14 38724315 G A 38 48 BRCA TCGA-AO-A03N SLC8A3 SNP Missense_Mutation 14 70634913 C A 24 98 BRCA TCGA-AO-A03N BUB1B SNP Silent 15 40498522 G A 33 56 BRCA TCGA-AO-A03N FBN1 SNP Missense_Mutation 15 48800793 C T 30 86 BRCA TCGA-AO-A03N MEGF11 SNP Silent 15 66206079 G A 33 49 BRCA TCGA-AO-A03N SCAPER SNP Missense_Mutation 15 76726583 C G 29 70 BRCA TCGA-AO-A03N IFT140 SNP Missense_Mutation 16 1608111 C T 31 52 BRCA TCGA-AO-A03N ITPRIPL2 SNP Silent 16 19126677 C T 19 60 BRCA TCGA-AO-A03N APOBR SNP Missense_Mutation 16 28507365 G A 41 52 BRCA TCGA-AO-A03N ALDOA SNP Missense_Mutation 16 30080931 C T 29 57 BRCA TCGA-AO-A03N RNF40 SNP Missense_Mutation 16 30783268 G C 33 96 BRCA TCGA-AO-A03N BCKDK SNP Missense_Mutation 16 31123564 G T 39 73 BRCA TCGA-AO-A03N SLC5A2 SNP Silent 16 31496154 C G 32 53 BRCA TCGA-AO-A03N MYLK3 SNP Missense_Mutation 16 46771693 G C 45 53 BRCA TCGA-AO-A03N C17orf78 SNP Nonsense_Mutation 17 35736110 C T 29 55 BRCA TCGA-AO-A03N SYNRG SNP Missense_Mutation 17 35900635 C G 32 55 BRCA TCGA-AO-A03N KRT25 SNP Silent 17 38907420 C T 32 42 BRCA TCGA-AO-A03N PLD2 SNP Silent 17 4711091 C T 32 51 BRCA TCGA-AO-A03N LLGL2 SNP Silent 17 73564696 C T 19 49 BRCA TCGA-AO-A03N TP53 SNP Missense_Mutation 17 7578449 C T 26 60 BRCA TCGA-AO-A03N LOC729774 SNP Silent 18 14361862 G A 38 51 BRCA TCGA-AO-A03N ZNF69 SNP Missense_Mutation 19 12016630 C G 32 54 BRCA TCGA-AO-A03N RPS16 SNP Silent 19 39924348 G T 41 65 BRCA TCGA-AO-A03N SYNGR4 SNP Missense_Mutation 19 48869187 G A 37 54 BRCA TCGA-AO-A03N ADAMTS10 SNP Missense_Mutation 19 8670241 C T 29 95 BRCA TCGA-AO-A03N FBXL12 SNP Missense_Mutation 19 9922014 G A 37 65 BRCA TCGA-AO-A03N RGPD3 SNP Missense_Mutation 2 107040417 C G 29 84 BRCA TCGA-AO-A03N CNTNAP5 SNP Missense_Mutation 2 125547707 T G 64 57 BRCA TCGA-AO-A03N GPR155 SNP Splice_Site 2 175311476 C T 32 85 BRCA TCGA-AO-A03N MAP2 SNP Missense_Mutation 2 210560177 G C 45 79 BRCA TCGA-AO-A03N IQCA1 SNP Missense_Mutation 2 237233390 C A 25 58 BRCA TCGA-AO-A03N RTN4 SNP Missense_Mutation 2 55252534 C A 25 54 BRCA TCGA-AO-A03N ENSG00000188971 SNP Missense_Mutation 2 69692925 G A 47 54 BRCA TCGA-AO-A03N KIF3B SNP Missense_Mutation 20 30898419 C T 32 97 BRCA TCGA-AO-A03N PRIC285 SNP Silent 20 62191561 G A 37 49 BRCA TCGA-AO-A03N SLC5A3 SNP Missense_Mutation 21 35467894 C G 32 100 BRCA TCGA-AO-A03N SLC37A1 SNP Missense_Mutation 21 43967216 C T 23 74 BRCA TCGA-AO-A03N LOC729526 SNP Silent 22 21435233 C T 32 60 BRCA TCGA-AO-A03N CACNA1I SNP Silent 22 40075816 C A 32 69 BRCA TCGA-AO-A03N RAB33A SNP Missense_Mutation 23 129306147 C G 29 58 BRCA TCGA-AO-A03N GPR119 SNP Silent 23 129518882 G C 33 58 BRCA TCGA-AO-A03N WNK3 SNP Missense_Mutation 23 54275569 G A 35 53 BRCA TCGA-AO-A03N AR SNP Nonsense_Mutation 23 66931346 C G 29 71 BRCA TCGA-AO-A03N OPHN1 SNP Nonsense_Mutation 23 67414316 G A 48 72 BRCA TCGA-AO-A03N CBLB SNP Missense_Mutation 3 105586395 G T 44 60 BRCA TCGA-AO-A03N CP SNP Missense_Mutation 3 148894046 G T 48 55 BRCA TCGA-AO-A03N ZFYVE20 SNP Silent 3 15115823 G A 42 59 BRCA TCGA-AO-A03N PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-AO-A03N LIMD1 SNP Missense_Mutation 3 45636504 C T 31 54 BRCA TCGA-AO-A03N FYCO1 SNP Silent 3 46007805 C G 29 69 BRCA TCGA-AO-A03N TRPC3 SNP Missense_Mutation 4 122853847 C T 27 100 BRCA TCGA-AO-A03N JAKMIP1 SNP Silent 4 6114530 C T 23 43 BRCA TCGA-AO-A03N P4HA2 SNP Missense_Mutation 5 131533908 G T 33 66 BRCA TCGA-AO-A03N C7 SNP Missense_Mutation 5 40959673 G A 33 73 BRCA TCGA-AO-A03N ADAMTS6 SNP Missense_Mutation 5 64511230 G A 34 98 BRCA TCGA-AO-A03N HIVEP1 SNP Silent 6 12164532 G A 45 53 BRCA TCGA-AO-A03N C6orf58 SNP Missense_Mutation 6 127898402 T A 50 45 BRCA TCGA-AO-A03N L3MBTL3 SNP Nonsense_Mutation 6 130392142 C T 31 80 BRCA TCGA-AO-A03N MTHFD1L SNP Missense_Mutation 6 151281482 G A 45 100 BRCA TCGA-AO-A03N MAP3K4 SNP Nonsense_Mutation 6 161507647 C G 29 97 BRCA TCGA-AO-A03N POM121L2 SNP Missense_Mutation 6 27278174 C T 29 50 BRCA TCGA-AO-A03N PFDN6 SNP Silent 6 33258201 G A 33 65 BRCA TCGA-AO-A03N MAPK14 SNP Silent 6 36040654 C T 32 73 BRCA TCGA-AO-A03N PGK2 SNP Silent 6 49754484 C T 32 68 BRCA TCGA-AO-A03N IMPG1 SNP Missense_Mutation 6 76744474 C T 23 98 BRCA TCGA-AO-A03N DOPEY1 SNP Missense_Mutation 6 83830462 C G 32 60 BRCA TCGA-AO-A03N RELN SNP Silent 7 103130322 C T 32 73 BRCA TCGA-AO-A03N LAMB1 SNP Missense_Mutation 7 107626640 C T 29 100 BRCA TCGA-AO-A03N STEAP1B SNP Missense_Mutation 7 22533058 C T 32 76 BRCA TCGA-AO-A03N GGCT SNP Nonsense_Mutation 7 30538452 G C 40 48 BRCA TCGA-AO-A03N VPS41 SNP Missense_Mutation 7 38807156 C T 32 91 BRCA TCGA-AO-A03N GCK SNP Silent 7 44228544 G A 40 49 BRCA TCGA-AO-A03N NSUN5 SNP Missense_Mutation 7 72717985 G T 39 51 BRCA TCGA-AO-A03N ABCB1 SNP Silent 7 87179586 C T 25 55 BRCA TCGA-AO-A03N NSMCE2 SNP Missense_Mutation 8 126194375 G C 33 70 BRCA TCGA-AO-A03N DLC1 SNP Nonsense_Mutation 8 13072274 G T 45 63 BRCA TCGA-AO-A03N BAI1 SNP Missense_Mutation 8 143602279 G T 38 75 BRCA TCGA-AO-A03N CYP7B1 SNP Missense_Mutation 8 65527712 G A 38 68 BRCA TCGA-AO-A03N LPAR1 SNP Missense_Mutation 9 113637855 C T 27 100 BRCA TCGA-AO-A03N GALT SNP Missense_Mutation 9 34648780 G C 45 64 BRCA TCGA-AO-A03O ASH1L SNP Missense_Mutation 1 155451295 G C 35 49 BRCA TCGA-AO-A03O PBX1 SNP Missense_Mutation 1 164776849 A T 5 92 BRCA TCGA-AO-A03O GPR26 SNP Nonsense_Mutation 10 125447554 C T 27 58 BRCA TCGA-AO-A03O ERCC6 SNP Missense_Mutation 10 50684343 C T 19 85 BRCA TCGA-AO-A03O CDON SNP Missense_Mutation 11 125880247 G C 33 66 BRCA TCGA-AO-A03O OR5AK2 SNP Missense_Mutation 11 56757155 C T 32 55 BRCA TCGA-AO-A03O TRIM5 DEL In_Frame_Del 11 5686577 TCAGAA - 62 47 BRCA TCGA-AO-A03O FOLR3 SNP Silent 11 71850076 C T 23 52 BRCA TCGA-AO-A03O SLCO1B3 SNP Missense_Mutation 12 21033820 C G 18 56 BRCA TCGA-AO-A03O ADAMTS20 SNP Missense_Mutation 12 43824186 C T 25 98 BRCA TCGA-AO-A03O TFCP2 SNP Nonsense_Mutation 12 51501078 G A 40 54 BRCA TCGA-AO-A03O KRT1 SNP Missense_Mutation 12 53071201 G A 39 77 BRCA TCGA-AO-A03O USP15 SNP Missense_Mutation 12 62749215 A G 3 74 BRCA TCGA-AO-A03O PLXNC1 SNP Silent 12 94563009 C T 25 68 BRCA TCGA-AO-A03O KLHL28 SNP Missense_Mutation 14 45414398 C T 19 97 BRCA TCGA-AO-A03O LCMT2 SNP Missense_Mutation 15 43621247 G A 38 51 BRCA TCGA-AO-A03O TP53BP1 SNP Missense_Mutation 15 43708431 A C 12 90 BRCA TCGA-AO-A03O SIN3A SNP Missense_Mutation 15 75688794 A G 7 92 BRCA TCGA-AO-A03O ZNF592 SNP Silent 15 85345501 A G 7 46 BRCA TCGA-AO-A03O KIAA0430 SNP Missense_Mutation 16 15724259 T A 51 94 BRCA TCGA-AO-A03O TMC5 SNP Missense_Mutation 16 19490813 T A 54 51 BRCA TCGA-AO-A03O RBFOX1 SNP Missense_Mutation 16 7629860 C T 27 54 BRCA TCGA-AO-A03O SPECC1 SNP Missense_Mutation 17 20135652 G A 39 63 BRCA TCGA-AO-A03O ACACA SNP Nonsense_Mutation 17 35641834 G A 39 67 BRCA TCGA-AO-A03O TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-AO-A03O ENGASE SNP Splice_site 17 77079103 C T 31 98 BRCA TCGA-AO-A03O NARF SNP Missense_Mutation 17 80436693 G A 37 97 BRCA TCGA-AO-A03O ZNF532 SNP Missense_Mutation 18 56586762 G A 40 69 BRCA TCGA-AO-A03O RGL3 SNP Silent 19 11512791 G C 43 55 BRCA TCGA-AO-A03O ASF1B SNP Silent 19 14232440 A G 8 34 BRCA TCGA-AO-A03O SYMPK SNP Missense_Mutation 19 46330823 C T 27 73 BRCA TCGA-AO-A03O FPR3 SNP Missense_Mutation 19 52327516 G A 43 51 BRCA TCGA-AO-A03O MFSD9 SNP Missense_Mutation 2 103334999 C G 24 55 BRCA TCGA-AO-A03O FIGN SNP Missense_Mutation 2 164466086 G C 48 64 BRCA TCGA-AO-A03O FEZ2 SNP Silent 2 36808464 G C 45 33 BRCA TCGA-AO-A03O RBBP9 SNP Missense_Mutation 20 18474608 G T 42 82 BRCA TCGA-AO-A03O MYLK2 SNP Missense_Mutation 20 30419936 G T 41 96 BRCA TCGA-AO-A03O RUNX1 DEL Frame_Shift_Del 21 36206845 CGGAAAAGGACAAGCTC - 31 71 BRCA TCGA-AO-A03O MCM3AP SNP Missense_Mutation 21 47664999 C T 27 72 BRCA TCGA-AO-A03O MICAL3 SNP Missense_Mutation 22 18384696 C A 20 54 BRCA TCGA-AO-A03O SFI1 DEL Frame_Shift_Del 22 31971257 ATAC - 16 41 BRCA TCGA-AO-A03O ARMCX2 SNP Missense_Mutation 23 100910988 C G 29 58 BRCA TCGA-AO-A03O MAGEA11 SNP Splice_Site 23 148770497 G T 35 44 BRCA TCGA-AO-A03O ZFP92 SNP Missense_Mutation 23 152686287 G A 39 55 BRCA TCGA-AO-A03O GPR64 SNP Missense_Mutation 23 19017264 C G 22 80 BRCA TCGA-AO-A03O CD99 SNP Missense_Mutation 23 2641359 A T 3 41 BRCA TCGA-AO-A03O FAM47C SNP Missense_Mutation 23 37027607 T A 59 43 BRCA TCGA-AO-A03O USP11 SNP Silent 23 47104088 C T 19 38 BRCA TCGA-AO-A03O UBQLN2 SNP Silent 23 56592010 T G 55 58 BRCA TCGA-AO-A03O LAS1L SNP Missense_Mutation 23 64737980 C G 32 54 BRCA TCGA-AO-A03O DGAT2L6 SNP Silent 23 69424167 C G 30 48 BRCA TCGA-AO-A03O ATRX SNP Missense_Mutation 23 76912112 A T 9 54 BRCA TCGA-AO-A03O ATP7A SNP Missense_Mutation 23 77289124 G C 43 100 BRCA TCGA-AO-A03O CNTN6 SNP Missense_Mutation 3 1369212 A T 4 49 BRCA TCGA-AO-A03O TMEM43 SNP Silent 3 14170983 G A 42 50 BRCA TCGA-AO-A03O PIK3CA DEL In_Frame_Del 3 178916944 AAGATCCTC - 1 89 BRCA TCGA-AO-A03O TRA2B SNP Splice_Site 3 185641773 C G 24 86 BRCA TCGA-AO-A03O VGLL3 SNP Missense_Mutation 3 87017995 G A 38 64 BRCA TCGA-AO-A03O INPP4B SNP Missense_Mutation 4 143181675 C T 23 52 BRCA TCGA-AO-A03O SFRP2 SNP Silent 4 154709541 G A 40 54 BRCA TCGA-AO-A03O ADAM29 SNP Missense_Mutation 4 175897349 C A 32 35 BRCA TCGA-AO-A03O GABRG1 SNP Silent 4 46060587 T C 56 64 BRCA TCGA-AO-A03O UBA6 SNP Missense_Mutation 4 68543381 G A 33 91 BRCA TCGA-AO-A03O AQPEP SNP Silent 5 115298425 C T 19 54 BRCA TCGA-AO-A03O CDC42SE2 SNP Silent 5 130726778 G A 39 8 BRCA TCGA-AO-A03O UBE2D2 SNP Missense_Mutation 5 138994342 C T 22 100 BRCA TCGA-AO-A03O PCDHGA3 SNP Silent 5 140724179 G A 34 51 BRCA TCGA-AO-A03O OSMR SNP Missense_Mutation 5 38885552 A C 13 48 BRCA TCGA-AO-A03O ZNF366 SNP Missense_Mutation 5 71752236 A T 8 92 BRCA TCGA-AO-A03O SEMA5A SNP Missense_Mutation 5 9063053 G T 42 69 BRCA TCGA-AO-A03O ASCC3 SNP Missense_Mutation 6 101073157 G A 40 71 BRCA TCGA-AO-A03O HTR1B SNP Silent 6 78172233 G A 40 65 BRCA TCGA-AO-A03O PIP5K1P1 SNP Silent 6 7986937 C T 31 26 BRCA TCGA-AO-A03O MLL5 DEL In_Frame_Del 7 104752839 CCTCCACCT - 22 84 BRCA TCGA-AO-A03O KIAA0895 SNP Missense_Mutation 7 36396564 G C 33 63 BRCA TCGA-AO-A03O PON2 SNP Missense_Mutation 7 95041063 G T 44 63 BRCA TCGA-AO-A03O VPS13B SNP Missense_Mutation 8 100160153 T C 60 86 BRCA TCGA-AO-A03O IARS SNP Nonsense_Mutation 9 94985652 G A 48 69 BRCA TCGA-AO-A03P AMY2B SNP Silent 1 104114362 T C 52 52 BRCA TCGA-AO-A03P OBSCN SNP Missense_Mutation 1 228479785 G T 42 52 BRCA TCGA-AO-A03P DDX21 SNP Missense_Mutation 10 70737298 G A 40 72 BRCA TCGA-AO-A03P GATA3 INS Frame_Shift_Ins 10 8115978 - T 8 77 BRCA TCGA-AO-A03P SLC6A5 SNP Silent 11 20652303 C T 23 35 BRCA TCGA-AO-A03P PRDM11 SNP Silent 11 45245850 G A 46 49 BRCA TCGA-AO-A03P TM7SF2 SNP Silent 11 64883379 C T 28 63 BRCA TCGA-AO-A03P ABCC9 SNP Missense_Mutation 12 21958207 T A 53 80 BRCA TCGA-AO-A03P ITGA7 SNP Missense_Mutation 12 56091275 C T 31 89 BRCA TCGA-AO-A03P CDK2 DEL Frame_Shift_Del 12 56361872 G - 47 59 BRCA TCGA-AO-A03P MDM1 SNP Silent 12 68720671 G A 43 47 BRCA TCGA-AO-A03P RAP2A SNP Nonsense_Mutation 13 98086995 C T 21 79 BRCA TCGA-AO-A03P SPTB SNP Missense_Mutation 14 65252609 G A 39 69 BRCA TCGA-AO-A03P MAX SNP Missense_Mutation 14 65568325 T C 49 50 BRCA TCGA-AO-A03P RYR3 SNP Silent 15 34130643 C T 23 57 BRCA TCGA-AO-A03P HOMER2 SNP Missense_Mutation 15 83523512 G A 35 79 BRCA TCGA-AO-A03P MVP SNP Nonsense_Mutation 16 29848117 G A 42 80 BRCA TCGA-AO-A03P KRT25 SNP Missense_Mutation 17 38910684 G T 33 60 BRCA TCGA-AO-A03P RAB5C INS Frame_Shift_Ins 17 40280782 - T 48 100 BRCA TCGA-AO-A03P PPM1E SNP Missense_Mutation 17 57049625 C G 18 100 BRCA TCGA-AO-A03P CCDC40 SNP Silent 17 78022365 G A 38 48 BRCA TCGA-AO-A03P CNTROB SNP Missense_Mutation 17 7840531 A G 4 42 BRCA TCGA-AO-A03P SLC20A1 SNP Missense_Mutation 2 113417065 A C 4 60 BRCA TCGA-AO-A03P ARL5A SNP Missense_Mutation 2 152668924 T C 55 54 BRCA TCGA-AO-A03P CAPN10 SNP Missense_Mutation 2 241534504 G C 42 86 BRCA TCGA-AO-A03P NLRC4 SNP Missense_Mutation 2 32476071 G A 40 49 BRCA TCGA-AO-A03P HCFC1 SNP Missense_Mutation 23 153220767 G T 40 92 BRCA TCGA-AO-A03P KIF4A SNP Missense_Mutation 23 69550016 G C 41 79 BRCA TCGA-AO-A03P SRPRB DEL Frame_Shift_Del 3 133524840 ACGCTAGGTAAAAGGCGGCC - 10 76 BRCA TCGA-AO-A03P QARS SNP Missense_Mutation 3 49140800 A C 12 90 BRCA TCGA-AO-A03P ZNF717 SNP Silent 3 75786521 G T 43 30 BRCA TCGA-AO-A03P OR5K3 SNP Silent 3 98110241 C A 32 45 BRCA TCGA-AO-A03P LOC100287951 SNP Silent 4 10413250 C T 31 58 BRCA TCGA-AO-A03P PRSS12 SNP Missense_Mutation 4 119203269 C T 27 57 BRCA TCGA-AO-A03P MFSD8 SNP Missense_Mutation 4 128842873 G A 33 60 BRCA TCGA-AO-A03P SMAD1 SNP Silent 4 146475147 C T 32 51 BRCA TCGA-AO-A03P GALNTL6 SNP Silent 4 173961206 T A 61 63 BRCA TCGA-AO-A03P LETM1 DEL In_Frame_Del 4 1821128 CTT - 20 51 BRCA TCGA-AO-A03P PCDHA2 SNP Missense_Mutation 5 140175999 G A 38 55 BRCA TCGA-AO-A03P ERBB2IP DEL Frame_Shift_Del 5 65346627 AG - 7 47 BRCA TCGA-AO-A03P UTRN SNP Splice_Site 6 144838085 G T 44 91 BRCA TCGA-AO-A03P GPX5 SNP Missense_Mutation 6 28501767 G T 47 50 BRCA TCGA-AO-A03P TREM1 SNP Missense_Mutation 6 41248835 G A 41 41 BRCA TCGA-AO-A03P TDRD6 SNP Missense_Mutation 6 46657105 T A 54 52 BRCA TCGA-AO-A03P CDHR3 DEL Frame_Shift_Del 7 105655584 C - 30 44 BRCA TCGA-AO-A03P SEC61B SNP Silent 9 101992703 G A 40 48 BRCA TCGA-AO-A03P PRRC2B SNP Missense_Mutation 9 134346218 C A 23 74 BRCA TCGA-AO-A03P PRKACG SNP Silent 9 71628799 G A 40 53 BRCA TCGA-AO-A03P ZCCHC6 SNP Missense_Mutation 9 88937958 C T 25 50 BRCA TCGA-AO-A03P IARS SNP Missense_Mutation 9 95007281 G C 48 75 BRCA TCGA-AO-A03P ERCC6L2 SNP Missense_Mutation 9 98774568 C T 17 51 BRCA TCGA-AO-A03R CADM3 SNP Silent 1 159170670 C T 27 54 BRCA TCGA-AO-A03R KLHL20 SNP Missense_Mutation 1 173703245 G T 33 65 BRCA TCGA-AO-A03R CACNA1E SNP Missense_Mutation 1 181689373 T C 54 90 BRCA TCGA-AO-A03R HMCN1 SNP Missense_Mutation 1 185902884 G T 46 80 BRCA TCGA-AO-A03R NUP133 SNP Silent 1 229619833 C T 20 45 BRCA TCGA-AO-A03R TMEM57 SNP Missense_Mutation 1 25824793 A G 1 87 BRCA TCGA-AO-A03R TPTE2 SNP Missense_Mutation 13 20041461 A G 13 47 BRCA TCGA-AO-A03R GPC5 SNP Silent 13 92345580 G A 39 34 BRCA TCGA-AO-A03R ZNF200 SNP Missense_Mutation 16 3274067 C T 17 96 BRCA TCGA-AO-A03R MEFV SNP Missense_Mutation 16 3299561 C T 27 51 BRCA TCGA-AO-A03R AARS SNP Missense_Mutation 16 70293052 G A 40 97 BRCA TCGA-AO-A03R RABEP1 SNP Missense_Mutation 17 5238487 C T 31 73 BRCA TCGA-AO-A03R TP53 SNP Missense_Mutation 17 7577144 A C 7 87 BRCA TCGA-AO-A03R OR10H5 SNP Silent 19 15905356 C T 31 52 BRCA TCGA-AO-A03R URI1 SNP Missense_Mutation 19 30500053 A T 2 56 BRCA TCGA-AO-A03R RYR1 SNP Missense_Mutation 19 38946102 C T 23 61 BRCA TCGA-AO-A03R PTCD3 SNP Missense_Mutation 2 86344259 G A 41 76 BRCA TCGA-AO-A03R SLC9A8 SNP Silent 20 48431650 C T 23 0 BRCA TCGA-AO-A03R FAM9B SNP Silent 23 8997417 G A 41 46 BRCA TCGA-AO-A03R GPR128 SNP Silent 3 100373700 A C 13 44 BRCA TCGA-AO-A03R MUC4 SNP Silent 3 195510990 C T 19 40 BRCA TCGA-AO-A03R PET112 SNP Missense_Mutation 4 152679994 T G 63 64 BRCA TCGA-AO-A03R PCDHGA9 DEL Frame_Shift_Del 5 140783298 G - 47 38 BRCA TCGA-AO-A03R TTC23L SNP Missense_Mutation 5 34867065 T A 52 65 BRCA TCGA-AO-A03R F2R SNP Missense_Mutation 5 76028303 C A 30 50 BRCA TCGA-AO-A03R FAM102A SNP Missense_Mutation 9 130716172 C A 31 70 BRCA TCGA-AO-A03T ATP5F1 SNP Missense_Mutation 1 111999346 A G 7 65 BRCA TCGA-AO-A03T CASQ2 SNP Missense_Mutation 1 116280859 C T 20 62 BRCA TCGA-AO-A03T NOTCH2 SNP Missense_Mutation 1 120529653 C A 18 59 BRCA TCGA-AO-A03T HIST2H2AC SNP Missense_Mutation 1 149858811 A T 3 90 BRCA TCGA-AO-A03T JTB DEL Frame_Shift_Del 1 153948314 T - 52 51 BRCA TCGA-AO-A03T C1orf116 SNP Silent 1 207195327 C T 32 90 BRCA TCGA-AO-A03T SELRC1 SNP Missense_Mutation 1 53153417 C G 18 49 BRCA TCGA-AO-A03T CACHD1 SNP Missense_Mutation 1 65129390 T G 50 93 BRCA TCGA-AO-A03T ZNF438 SNP Missense_Mutation 10 31134261 C G 29 67 BRCA TCGA-AO-A03T ZNF485 SNP Missense_Mutation 10 44111988 C A 26 51 BRCA TCGA-AO-A03T KAT6B SNP Missense_Mutation 10 76603139 A G 4 77 BRCA TCGA-AO-A03T NCAM1 SNP Missense_Mutation 11 113105772 G A 40 60 BRCA TCGA-AO-A03T TECTA SNP Missense_Mutation 11 121060518 C A 19 84 BRCA TCGA-AO-A03T OR6T1 SNP Missense_Mutation 11 123814154 C A 27 50 BRCA TCGA-AO-A03T ENSG00000197041 SNP Silent 12 104424589 C T 19 50 BRCA TCGA-AO-A03T GCN1L1 SNP Missense_Mutation 12 120591094 G C 46 100 BRCA TCGA-AO-A03T LRP6 SNP Missense_Mutation 12 12397385 T A 55 64 BRCA TCGA-AO-A03T ERCC5 SNP Missense_Mutation 13 103514800 T C 59 46 BRCA TCGA-AO-A03T CHURC1-FNTB SNP Splice_site 14 65381251 G A 39 68 BRCA TCGA-AO-A03T YLPM1 SNP Missense_Mutation 14 75247126 G C 33 80 BRCA TCGA-AO-A03T LPCAT4 SNP Nonstop_Mutation 15 34651330 A G 7 63 BRCA TCGA-AO-A03T SHC4 DEL In_Frame_Del 15 49148280 TCT - 50 59 BRCA TCGA-AO-A03T KLHL25 SNP Silent 15 86311929 C T 23 41 BRCA TCGA-AO-A03T MCTP2 SNP Silent 15 94910918 T A 61 40 BRCA TCGA-AO-A03T SRCAP SNP Missense_Mutation 16 30722922 A T 7 61 BRCA TCGA-AO-A03T TRIM72 SNP Missense_Mutation 16 31230728 G A 43 66 BRCA TCGA-AO-A03T C16orf96 SNP Missense_Mutation 16 4624728 G T 41 52 BRCA TCGA-AO-A03T MLYCD SNP Missense_Mutation 16 83940597 G A 45 70 BRCA TCGA-AO-A03T MAP2K4 INS Splice_site 17 12011108 - T 44 85 BRCA TCGA-AO-A03T SUPT6H SNP Missense_Mutation 17 27001581 G A 45 99 BRCA TCGA-AO-A03T MYCBPAP SNP Missense_Mutation 17 48595031 G C 33 62 BRCA TCGA-AO-A03T ABCA10 SNP Missense_Mutation 17 67212118 A T 6 43 BRCA TCGA-AO-A03T BAHCC1 SNP Missense_Mutation 17 79414665 C T 27 52 BRCA TCGA-AO-A03T MBD1 SNP Missense_Mutation 18 47800615 C T 23 94 BRCA TCGA-AO-A03T COMP SNP Silent 19 18902064 G C 39 54 BRCA TCGA-AO-A03T LMTK3 SNP Missense_Mutation 19 49004805 C T 27 89 BRCA TCGA-AO-A03T HAS1 SNP Missense_Mutation 19 52217239 C G 21 88 BRCA TCGA-AO-A03T MUC16 SNP Missense_Mutation 19 9056288 G C 42 51 BRCA TCGA-AO-A03T SEPT10 SNP Missense_Mutation 2 110343411 C A 32 49 BRCA TCGA-AO-A03T GLI2 SNP Missense_Mutation 2 121743981 C T 19 69 BRCA TCGA-AO-A03T TTN SNP Missense_Mutation 2 179471808 T C 62 91 BRCA TCGA-AO-A03T TTN DEL Frame_Shift_Del 2 179605674 G - 46 65 BRCA TCGA-AO-A03T AOX1 SNP Silent 2 201523930 C T 24 57 BRCA TCGA-AO-A03T USP37 SNP Missense_Mutation 2 219410972 C G 32 76 BRCA TCGA-AO-A03T PREPL SNP Missense_Mutation 2 44549012 T A 50 78 BRCA TCGA-AO-A03T RTN4 SNP Missense_Mutation 2 55209715 A C 6 93 BRCA TCGA-AO-A03T PAPOLG SNP Missense_Mutation 2 61021858 A T 9 80 BRCA TCGA-AO-A03T C20orf26 SNP Splice_site 20 20054946 C A 26 81 BRCA TCGA-AO-A03T CDH26 SNP Silent 20 58564054 G T 38 46 BRCA TCGA-AO-A03T GAL3ST1 SNP Missense_Mutation 22 30951010 A G 7 92 BRCA TCGA-AO-A03T ARMCX2 DEL Frame_Shift_Del 23 100910935 CTGAGAAGTTT - 20 69 BRCA TCGA-AO-A03T GPR112 SNP Silent 23 135428727 C T 21 63 BRCA TCGA-AO-A03T FLNA SNP Missense_Mutation 23 153593247 G T 37 43 BRCA TCGA-AO-A03T CLIC2 SNP Splice_site 23 154528458 C T 26 92 BRCA TCGA-AO-A03T SFRS17A SNP Missense_Mutation 23 1720158 C T 23 47 BRCA TCGA-AO-A03T ATRX SNP Silent 23 76937079 T C 60 50 BRCA TCGA-AO-A03T PCDH19 DEL Frame_Shift_Del 23 99661504 AGATCAT - 3 77 BRCA TCGA-AO-A03T SETD2 SNP Missense_Mutation 3 47164390 T C 52 50 BRCA TCGA-AO-A03T PITX2 SNP Missense_Mutation 4 111539646 A C 3 90 BRCA TCGA-AO-A03T NKX3-2 SNP Silent 4 13543811 G A 35 82 BRCA TCGA-AO-A03T TRIML1 SNP Silent 4 189068235 T A 55 23 BRCA TCGA-AO-A03T DHX15 SNP Nonsense_Mutation 4 24529618 G A 48 99 BRCA TCGA-AO-A03T SLC4A4 SNP Silent 4 72316953 G C 38 43 BRCA TCGA-AO-A03T GFPT2 SNP Missense_Mutation 5 179739534 C T 20 100 BRCA TCGA-AO-A03T TARS SNP Missense_Mutation 5 33461087 A C 11 94 BRCA TCGA-AO-A03T C7 SNP Missense_Mutation 5 40934436 C T 27 54 BRCA TCGA-AO-A03T ENPP1 SNP Missense_Mutation 6 132207728 A C 9 82 BRCA TCGA-AO-A03T DST DEL Frame_Shift_Del 6 56473071 TGACTTGAGAACTTTC - 51 53 BRCA TCGA-AO-A03T MDN1 SNP Missense_Mutation 6 90388354 C T 28 98 BRCA TCGA-AO-A03T FBXO24 SNP Missense_Mutation 7 100189458 C T 30 65 BRCA TCGA-AO-A03T DLD SNP Missense_Mutation 7 107533688 C T 32 62 BRCA TCGA-AO-A03T CALD1 SNP Silent 7 134618765 G A 41 51 BRCA TCGA-AO-A03T KCNH2 SNP Missense_Mutation 7 150647101 G T 38 47 BRCA TCGA-AO-A03T URGCP SNP Missense_Mutation 7 43917712 G T 48 47 BRCA TCGA-AO-A03T PMS2 SNP Missense_Mutation 7 6038878 T G 51 90 BRCA TCGA-AO-A03T CLDN12 SNP Missense_Mutation 7 90042574 G C 47 97 BRCA TCGA-AO-A03T AKAP9 SNP Silent 7 91630767 C G 29 53 BRCA TCGA-AO-A03T CYP3A7 SNP Silent 7 99306819 G C 45 50 BRCA TCGA-AO-A03T PVRIG SNP Missense_Mutation 7 99818791 C A 26 57 BRCA TCGA-AO-A03T VPS37A SNP Nonsense_Mutation 8 17137583 G T 33 97 BRCA TCGA-AO-A03T CSMD1 SNP Missense_Mutation 8 2818711 G T 44 55 BRCA TCGA-AO-A03T EYA1 SNP Missense_Mutation 8 72211888 A G 13 70 BRCA TCGA-AO-A03T CNTLN SNP Missense_Mutation 9 17235755 G C 41 65 BRCA TCGA-AO-A03T C9orf123 SNP Silent 9 7799564 C A 26 51 BRCA TCGA-AO-A03T VPS13A SNP Missense_Mutation 9 80020881 G A 33 97 BRCA TCGA-AO-A03U LOC100288406 SNP Missense_Mutation 12 92260 G C 33 65 BRCA TCGA-AO-A03U ENSG00000206192 SNP Silent 13 19317503 T C 60 51 BRCA TCGA-AO-A03U RPS27L INS In_Frame_Ins 15 63448632 - TAC 1 90 BRCA TCGA-AO-A03U PIGQ SNP Silent 16 624101 G A 40 42 BRCA TCGA-AO-A03U AP3D1 DEL Frame_Shift_Del 19 2114127 C - 32 59 BRCA TCGA-AO-A03U C2orf16 SNP Missense_Mutation 2 27803312 G C 33 54 BRCA TCGA-AO-A03U PJA2 SNP Missense_Mutation 5 108698676 T C 52 55 BRCA TCGA-AO-A03U GPR98 DEL Frame_Shift_Del 5 89990148 TA - 53 47 BRCA TCGA-AO-A03U TG SNP Silent 8 133899093 A G 11 49 BRCA TCGA-AO-A03U C9orf86 SNP Silent 9 139731969 C T 23 53 BRCA TCGA-AO-A03V FBXO2 SNP Missense_Mutation 1 11708857 G C 39 83 BRCA TCGA-AO-A03V AURKAIP1 SNP Splice_Site 1 1309283 C T 32 86 BRCA TCGA-AO-A03V TARS2 SNP Missense_Mutation 1 150476814 G C 45 97 BRCA TCGA-AO-A03V HEATR1 SNP Nonsense_Mutation 1 236738059 C A 29 66 BRCA TCGA-AO-A03V HIVEP3 SNP Missense_Mutation 1 42047320 G A 33 98 BRCA TCGA-AO-A03V TGFBR3 SNP Missense_Mutation 1 92161237 G T 33 97 BRCA TCGA-AO-A03V KIAA1462 SNP Missense_Mutation 10 30317146 C T 32 55 BRCA TCGA-AO-A03V CYP2C8 SNP Missense_Mutation 10 96802742 C A 20 40 BRCA TCGA-AO-A03V OR4C16 SNP Missense_Mutation 11 55339821 C A 20 78 BRCA TCGA-AO-A03V MAP3K11 SNP Splice_site 11 65365763 C G 29 58 BRCA TCGA-AO-A03V PDE3A SNP Missense_Mutation 12 20803395 G A 41 98 BRCA TCGA-AO-A03V PPFIA2 SNP Missense_Mutation 12 81678036 G A 46 97 BRCA TCGA-AO-A03V PPFIA2 SNP Missense_Mutation 12 82147913 G T 47 87 BRCA TCGA-AO-A03V THSD1 SNP Silent 13 52971733 G A 34 56 BRCA TCGA-AO-A03V RYR3 SNP Missense_Mutation 15 34023837 C T 19 100 BRCA TCGA-AO-A03V ADAMTSL3 SNP Missense_Mutation 15 84373178 C T 22 90 BRCA TCGA-AO-A03V SSH2 SNP Missense_Mutation 17 27959760 C G 29 90 BRCA TCGA-AO-A03V TBKBP1 SNP Missense_Mutation 17 45773639 G A 39 95 BRCA TCGA-AO-A03V CD300A SNP Missense_Mutation 17 72470679 T A 58 46 BRCA TCGA-AO-A03V SERPINB12 SNP Missense_Mutation 18 61233851 A T 1 41 BRCA TCGA-AO-A03V ANKRD12 SNP Missense_Mutation 18 9211612 C T 19 99 BRCA TCGA-AO-A03V C19orf12 SNP Missense_Mutation 19 30199322 G A 40 27 BRCA TCGA-AO-A03V ZNF583 SNP Missense_Mutation 19 56925731 C T 26 74 BRCA TCGA-AO-A03V TTN SNP Missense_Mutation 2 179498336 C G 29 38 BRCA TCGA-AO-A03V PUM2 SNP Silent 2 20455818 G A 45 72 BRCA TCGA-AO-A03V INPP5D SNP Missense_Mutation 2 233986963 C A 17 46 BRCA TCGA-AO-A03V KDM3A SNP Missense_Mutation 2 86707459 G A 34 68 BRCA TCGA-AO-A03V CABIN1 SNP Missense_Mutation 22 24468359 C T 29 92 BRCA TCGA-AO-A03V SGSM1 SNP Missense_Mutation 22 25294156 C T 19 51 BRCA TCGA-AO-A03V POLR2F SNP Missense_Mutation 22 38355468 G A 37 94 BRCA TCGA-AO-A03V ASMTL SNP Missense_Mutation 23 1522340 T G 56 40 BRCA TCGA-AO-A03V GPR64 SNP Missense_Mutation 23 19021075 C G 18 98 BRCA TCGA-AO-A03V ARAF SNP Missense_Mutation 23 47430771 G A 39 80 BRCA TCGA-AO-A03V LRRC34 SNP Silent 3 169524690 G T 45 49 BRCA TCGA-AO-A03V UBA7 SNP Missense_Mutation 3 49847551 T G 59 74 BRCA TCGA-AO-A03V PDZRN3 SNP Missense_Mutation 3 73432884 C T 30 99 BRCA TCGA-AO-A03V KIAA1109 SNP Missense_Mutation 4 123109213 G T 36 100 BRCA TCGA-AO-A03V MOB1B SNP Missense_Mutation 4 71840935 A G 16 94 BRCA TCGA-AO-A03V PCDHB11 SNP Missense_Mutation 5 140581431 C A 26 68 BRCA TCGA-AO-A03V CDH12 SNP Missense_Mutation 5 21817115 C T 30 94 BRCA TCGA-AO-A03V C9 DEL Frame_Shift_Del 5 39288989 A - 5 82 BRCA TCGA-AO-A03V GHR SNP Nonsense_Mutation 5 42695133 C G 29 54 BRCA TCGA-AO-A03V FBXO30 SNP Missense_Mutation 6 146127358 T G 64 93 BRCA TCGA-AO-A03V IGF2R SNP Silent 6 160496980 C T 29 52 BRCA TCGA-AO-A03V HIST1H2BF SNP Silent 6 26199999 C T 31 60 BRCA TCGA-AO-A03V FOXP2 SNP Missense_Mutation 7 114066679 G A 44 97 BRCA TCGA-AO-A03V AP4M1 SNP Missense_Mutation 7 99701247 A G 10 83 BRCA TCGA-AO-A03V DLC1 SNP Missense_Mutation 8 12947852 C A 17 79 BRCA TCGA-AO-A03V KIAA1429 SNP Missense_Mutation 8 95541412 C T 30 88 BRCA TCGA-AO-A03V KIAA0368 SNP Silent 9 114176803 C A 26 60 BRCA TCGA-AO-A03V MPDZ SNP Silent 9 13192136 T C 55 51 BRCA TCGA-AO-A0J2 DCST1 SNP Missense_Mutation 1 155006974 C T 23 64 BRCA TCGA-AO-A0J2 ATP1A4 SNP Missense_Mutation 1 160121911 G C 33 47 BRCA TCGA-AO-A0J2 CFH SNP Silent 1 196683022 A T 12 47 BRCA TCGA-AO-A0J2 IARS2 SNP Missense_Mutation 1 220316439 C A 20 80 BRCA TCGA-AO-A0J2 IL28RA DEL Frame_Shift_Del 1 24488039 C - 30 44 BRCA TCGA-AO-A0J2 SORCS1 SNP Missense_Mutation 10 108367018 A T 6 87 BRCA TCGA-AO-A0J2 PHYH SNP Silent 10 13325816 G A 40 50 BRCA TCGA-AO-A0J2 OR6T1 SNP Silent 11 123814411 A T 13 41 BRCA TCGA-AO-A0J2 FAR1 INS Frame_Shift_Ins 11 13721879 - AAATC 11 80 BRCA TCGA-AO-A0J2 FAR1 INS In_Frame_Ins 11 13721883 - TTT 12 79 BRCA TCGA-AO-A0J2 MPEG1 SNP Silent 11 58978653 G A 42 54 BRCA TCGA-AO-A0J2 SLC22A10 DEL In_Frame_Del 11 63057707 ATTCTTCCCTCTCTCATGTTATTA - 16 13 BRCA TCGA-AO-A0J2 NAV3 SNP Silent 12 78594278 C A 21 41 BRCA TCGA-AO-A0J2 ADAMTS17 SNP Missense_Mutation 15 100801723 T C 58 85 BRCA TCGA-AO-A0J2 HERC2 DEL Frame_Shift_Del 15 28360572 TACCTCACTGAGGTCCGCGA - 61 53 BRCA TCGA-AO-A0J2 CEMP1 SNP Silent 16 2580811 A C 7 46 BRCA TCGA-AO-A0J2 ITGAX SNP Splice_site 16 31382656 A G 10 61 BRCA TCGA-AO-A0J2 ENSG00000226760 SNP Missense_Mutation 16 32489447 G A 47 64 BRCA TCGA-AO-A0J2 C17orf97 SNP Silent 17 263747 C T 23 39 BRCA TCGA-AO-A0J2 TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-AO-A0J2 LPIN2 SNP Silent 18 2937724 C G 23 53 BRCA TCGA-AO-A0J2 ZFP161 SNP Silent 18 5291511 C T 18 51 BRCA TCGA-AO-A0J2 AKAP8L SNP Missense_Mutation 19 15514361 T A 60 80 BRCA TCGA-AO-A0J2 WIZ SNP Missense_Mutation 19 15547847 C T 23 89 BRCA TCGA-AO-A0J2 NWD1 SNP Silent 19 16870120 G A 38 24 BRCA TCGA-AO-A0J2 ATP4A SNP Missense_Mutation 19 36054333 C T 21 67 BRCA TCGA-AO-A0J2 HAUS5 DEL Frame_Shift_Del 19 36103737 CGGTCGAAGAGATGGGGGTGCCCGTGGCGGCC - 27 62 BRCA TCGA-AO-A0J2 DYRK1B SNP Missense_Mutation 19 40319129 G C 36 70 BRCA TCGA-AO-A0J2 SLC4A10 SNP Missense_Mutation 2 162804110 G C 39 64 BRCA TCGA-AO-A0J2 COBLL1 SNP Silent 2 165551133 A T 11 50 BRCA TCGA-AO-A0J2 ABCB11 SNP Nonsense_Mutation 2 169870851 T A 62 80 BRCA TCGA-AO-A0J2 COL5A2 SNP Splice_Site 2 189943788 C G 18 83 BRCA TCGA-AO-A0J2 WDR35 SNP Nonsense_Mutation 2 20131080 C A 29 75 BRCA TCGA-AO-A0J2 TGM3 SNP Missense_Mutation 20 2298032 C A 18 96 BRCA TCGA-AO-A0J2 PLCB1 SNP Missense_Mutation 20 8637898 C A 24 84 BRCA TCGA-AO-A0J2 DNAJC28 SNP Missense_Mutation 21 34860854 T C 62 56 BRCA TCGA-AO-A0J2 AGPAT3 SNP Missense_Mutation 21 45400990 C A 24 98 BRCA TCGA-AO-A0J2 AIFM3 SNP Missense_Mutation 22 21334332 C T 26 90 BRCA TCGA-AO-A0J2 UPB1 DEL Frame_Shift_Del 22 24916420 TCAATCGAGTGGGCACCGTAAG - 50 90 BRCA TCGA-AO-A0J2 GTSE1 DEL Frame_Shift_Del 22 46704300 G - 39 16 BRCA TCGA-AO-A0J2 TIMM8A DEL In_Frame_Del 23 100603538 TCTGGTGCACCAGCTGCTGGAAGCGCTGCT - 50 67 BRCA TCGA-AO-A0J2 SPANXN4 SNP Missense_Mutation 23 142121829 A G 7 47 BRCA TCGA-AO-A0J2 ZPLD1 SNP Missense_Mutation 3 102183084 T A 50 47 BRCA TCGA-AO-A0J2 PLA1A SNP Silent 3 119336879 G C 45 61 BRCA TCGA-AO-A0J2 ITPR1 SNP Silent 3 4699915 C T 31 57 BRCA TCGA-AO-A0J2 OR5H6 SNP Missense_Mutation 3 97984086 A G 4 49 BRCA TCGA-AO-A0J2 POLN SNP Missense_Mutation 4 2087377 G C 36 72 BRCA TCGA-AO-A0J2 CAMK2A SNP Silent 5 149618306 G T 35 48 BRCA TCGA-AO-A0J2 CDH9 SNP Splice_site 5 26890538 T C 61 49 BRCA TCGA-AO-A0J2 WASF1 SNP Missense_Mutation 6 110422929 C T 25 74 BRCA TCGA-AO-A0J2 GPRC6A SNP Silent 6 117128090 G T 37 61 BRCA TCGA-AO-A0J2 LAMA2 SNP Silent 6 129468133 T A 63 42 BRCA TCGA-AO-A0J2 IL22RA2 SNP Missense_Mutation 6 137466808 C A 32 59 BRCA TCGA-AO-A0J2 ARID1B SNP Missense_Mutation 6 157488246 C G 17 73 BRCA TCGA-AO-A0J2 ZBTB9 SNP Silent 6 33423207 G A 46 54 BRCA TCGA-AO-A0J2 KCNK17 SNP Silent 6 39268235 C T 31 50 BRCA TCGA-AO-A0J2 SLC4A2 SNP Missense_Mutation 7 150767276 G C 36 82 BRCA TCGA-AO-A0J2 ITGB8 SNP Missense_Mutation 7 20431066 A G 10 84 BRCA TCGA-AO-A0J2 CDCA7L SNP Missense_Mutation 7 21942714 A T 7 93 BRCA TCGA-AO-A0J2 PKHD1L1 SNP Silent 8 110503326 G A 43 50 BRCA TCGA-AO-A0J2 CYP11B1 SNP Missense_Mutation 8 143961043 C G 30 51 BRCA TCGA-AO-A0J2 PTGS1 SNP Missense_Mutation 9 125148912 G C 35 44 BRCA TCGA-AO-A0J2 ASB6 SNP Missense_Mutation 9 132404204 C A 21 61 BRCA TCGA-AO-A0J2 FAM154A SNP Silent 9 18950827 G C 47 55 BRCA TCGA-AO-A0J2 ACO1 SNP Silent 9 32431799 T C 51 47 BRCA TCGA-AO-A0J2 FAM75A1 SNP Missense_Mutation 9 39361273 T C 64 42 BRCA TCGA-AO-A0J2 FAM75A2 SNP Missense_Mutation 9 39890524 T C 64 36 BRCA TCGA-AO-A0J2 SMC5 SNP Missense_Mutation 9 72959102 C G 25 71 BRCA TCGA-AO-A0J2 FAM75C1 SNP Missense_Mutation 9 90535856 C A 30 54 BRCA TCGA-AO-A0J3 GPSM2 SNP Missense_Mutation 1 109465061 G C 41 77 BRCA TCGA-AO-A0J3 LRIG2 SNP Missense_Mutation 1 113662083 C T 26 64 BRCA TCGA-AO-A0J3 SPTA1 SNP Missense_Mutation 1 158583632 G T 38 72 BRCA TCGA-AO-A0J3 OR6N1 SNP Silent 1 158735726 G A 45 56 BRCA TCGA-AO-A0J3 PYHIN1 SNP Missense_Mutation 1 158912052 G T 48 66 BRCA TCGA-AO-A0J3 DDI2 SNP Missense_Mutation 1 15978378 G T 34 79 BRCA TCGA-AO-A0J3 KIF21B SNP Silent 1 200959737 G C 45 57 BRCA TCGA-AO-A0J3 KIF21B SNP Silent 1 200960092 G A 33 58 BRCA TCGA-AO-A0J3 CR1 SNP Missense_Mutation 1 207785317 C T 24 51 BRCA TCGA-AO-A0J3 SUFU SNP Missense_Mutation 10 104356987 G A 37 99 BRCA TCGA-AO-A0J3 FRMD4A SNP Missense_Mutation 10 13708296 C A 20 55 BRCA TCGA-AO-A0J3 MYO3A SNP Missense_Mutation 10 26463134 C A 25 51 BRCA TCGA-AO-A0J3 KIAA1462 SNP Missense_Mutation 10 30318049 G A 39 96 BRCA TCGA-AO-A0J3 NRP1 SNP Missense_Mutation 10 33543059 G A 34 63 BRCA TCGA-AO-A0J3 GATA3 DEL Frame_Shift_Del 10 8115942 TT - 56 88 BRCA TCGA-AO-A0J3 SBF2 SNP Missense_Mutation 11 10015496 C T 31 86 BRCA TCGA-AO-A0J3 ARHGAP20 SNP Missense_Mutation 11 110451528 C A 28 60 BRCA TCGA-AO-A0J3 NXPE1 SNP Missense_Mutation 11 114400922 C A 32 46 BRCA TCGA-AO-A0J3 NCAPD3 SNP Splice_site 11 134062803 G A 34 97 BRCA TCGA-AO-A0J3 MMP26 SNP Missense_Mutation 11 5010971 G T 47 65 BRCA TCGA-AO-A0J3 TRIM34 SNP Missense_Mutation 11 5624497 C G 32 58 BRCA TCGA-AO-A0J3 SLCO2B1 SNP Missense_Mutation 11 74880325 C A 32 50 BRCA TCGA-AO-A0J3 TUB SNP Missense_Mutation 11 8060462 C A 32 52 BRCA TCGA-AO-A0J3 CLIP1 SNP Silent 12 122845563 G A 45 65 BRCA TCGA-AO-A0J3 GRIN2B SNP Nonsense_Mutation 12 13716856 C A 31 98 BRCA TCGA-AO-A0J3 SPATA13 SNP Missense_Mutation 13 24858359 G T 42 70 BRCA TCGA-AO-A0J3 EAPP SNP Silent 14 35002708 C T 31 41 BRCA TCGA-AO-A0J3 NID2 SNP Nonsense_Mutation 14 52485862 C T 21 98 BRCA TCGA-AO-A0J3 ADAMTS17 SNP Nonsense_Mutation 15 100537592 G A 48 55 BRCA TCGA-AO-A0J3 MKRN3 SNP Missense_Mutation 15 23812230 G C 44 53 BRCA TCGA-AO-A0J3 MAGEL2 DEL Frame_Shift_Del 15 23889881 G - 47 48 BRCA TCGA-AO-A0J3 RNF111 DEL Frame_Shift_Del 15 59368377 CTCT - 24 48 BRCA TCGA-AO-A0J3 LACTB SNP Missense_Mutation 15 63433916 T C 60 91 BRCA TCGA-AO-A0J3 POLG SNP Missense_Mutation 15 89870240 C A 28 57 BRCA TCGA-AO-A0J3 ALKBH5 SNP Missense_Mutation 17 18110148 C T 23 86 BRCA TCGA-AO-A0J3 PGAP3 SNP Missense_Mutation 17 37842260 C T 23 45 BRCA TCGA-AO-A0J3 ZNF536 SNP Splice_site 19 31048070 G A 45 66 BRCA TCGA-AO-A0J3 SPTBN4 SNP Silent 19 41008789 G A 35 60 BRCA TCGA-AO-A0J3 ZFP28 SNP Silent 19 57066677 A G 8 50 BRCA TCGA-AO-A0J3 TRIM28 SNP Missense_Mutation 19 59059870 C T 27 64 BRCA TCGA-AO-A0J3 IL1R1 SNP Missense_Mutation 2 102781403 C G 17 51 BRCA TCGA-AO-A0J3 TTN SNP Missense_Mutation 2 179403912 G A 41 88 BRCA TCGA-AO-A0J3 TTN SNP Nonsense_Mutation 2 179444429 G A 40 63 BRCA TCGA-AO-A0J3 MLPH SNP Missense_Mutation 2 238436082 G A 45 73 BRCA TCGA-AO-A0J3 EGR4 SNP Silent 2 73519008 C T 27 52 BRCA TCGA-AO-A0J3 RPIA SNP Silent 2 89034083 C T 31 49 BRCA TCGA-AO-A0J3 PKIG SNP Missense_Mutation 20 43243339 G A 37 63 BRCA TCGA-AO-A0J3 H2BFWT SNP Missense_Mutation 23 103268001 C T 23 17 BRCA TCGA-AO-A0J3 C1GALT1C1 SNP Missense_Mutation 23 119760251 C A 24 52 BRCA TCGA-AO-A0J3 AFF2 SNP Missense_Mutation 23 148037437 T C 59 50 BRCA TCGA-AO-A0J3 SRPX SNP Splice_Site 23 38016148 C G 18 83 BRCA TCGA-AO-A0J3 POU3F4 SNP Missense_Mutation 23 82763876 G T 41 81 BRCA TCGA-AO-A0J3 ZBBX SNP Silent 3 167083758 G A 38 56 BRCA TCGA-AO-A0J3 CELSR3 DEL Frame_Shift_Del 3 48687978 C - 18 81 BRCA TCGA-AO-A0J3 SYNPO2 SNP Silent 4 119944647 C T 29 81 BRCA TCGA-AO-A0J3 UCP1 SNP Missense_Mutation 4 141484633 G A 40 53 BRCA TCGA-AO-A0J3 DDX60L SNP Missense_Mutation 4 169344916 G A 37 62 BRCA TCGA-AO-A0J3 FAT1 SNP Silent 4 187627796 G A 40 62 BRCA TCGA-AO-A0J3 NOA1 SNP Missense_Mutation 4 57842745 C T 27 71 BRCA TCGA-AO-A0J3 SH3TC1 SNP Missense_Mutation 4 8224596 A C 9 63 BRCA TCGA-AO-A0J3 PCDHA1 SNP Silent 5 140166325 G A 38 26 BRCA TCGA-AO-A0J3 SLC25A2 SNP Missense_Mutation 5 140683389 G A 38 63 BRCA TCGA-AO-A0J3 GABRA6 SNP Missense_Mutation 5 161119043 C A 28 100 BRCA TCGA-AO-A0J3 RGS14 SNP Silent 5 176793928 C T 24 66 BRCA TCGA-AO-A0J3 C5orf42 DEL In_Frame_Del 5 37170358 GTT - 36 55 BRCA TCGA-AO-A0J3 KIAA0825 SNP Silent 5 93856500 G A 33 48 BRCA TCGA-AO-A0J3 TTC37 SNP Missense_Mutation 5 94861323 G A 37 64 BRCA TCGA-AO-A0J3 UTRN SNP Missense_Mutation 6 145095471 A C 1 93 BRCA TCGA-AO-A0J3 C6orf118 SNP Nonsense_Mutation 6 165715773 C T 21 61 BRCA TCGA-AO-A0J3 TNXB SNP Missense_Mutation 6 32064509 G C 39 70 BRCA TCGA-AO-A0J3 DEFB113 SNP Missense_Mutation 6 49936562 C G 32 43 BRCA TCGA-AO-A0J3 MUC12 SNP Missense_Mutation 7 100647960 G T 35 61 BRCA TCGA-AO-A0J3 CREB5 SNP Silent 7 28547244 G A 37 38 BRCA TCGA-AO-A0J3 FAM20C DEL Frame_Shift_Del 7 296993 C - 19 50 BRCA TCGA-AO-A0J3 UPK3B SNP Silent 7 76141173 G A 38 44 BRCA TCGA-AO-A0J3 CA1 SNP Silent 8 86241930 G A 45 54 BRCA TCGA-AO-A0J3 ODF2 SNP Missense_Mutation 9 131247750 A T 4 62 BRCA TCGA-AO-A0J3 LCN10 SNP Splice_site 9 139634403 G C 40 44 BRCA TCGA-AO-A0J3 CNTLN SNP Missense_Mutation 9 17226215 C T 32 92 BRCA TCGA-AO-A0J3 LOC100288436 SNP Missense_Mutation 9 30559345 C T 29 51 BRCA TCGA-AO-A0J4 OLFML3 SNP Missense_Mutation 1 114523022 G C 33 63 BRCA TCGA-AO-A0J4 AMPD1 SNP Missense_Mutation 1 115216584 T A 56 59 BRCA TCGA-AO-A0J4 TBX15 SNP Missense_Mutation 1 119428004 C T 31 81 BRCA TCGA-AO-A0J4 TTC24 SNP Missense_Mutation 1 156555562 C T 19 45 BRCA TCGA-AO-A0J4 ARHGAP30 SNP Missense_Mutation 1 161018344 G A 43 38 BRCA TCGA-AO-A0J4 STX6 SNP Silent 1 180957443 G A 33 74 BRCA TCGA-AO-A0J4 USH2A SNP Missense_Mutation 1 215848874 G T 33 47 BRCA TCGA-AO-A0J4 OR2T3 SNP Missense_Mutation 1 248636865 G A 38 52 BRCA TCGA-AO-A0J4 ZMYM4 SNP Missense_Mutation 1 35851767 T G 53 91 BRCA TCGA-AO-A0J4 INPP5B SNP Missense_Mutation 1 38397539 C A 23 28 BRCA TCGA-AO-A0J4 C1orf210 SNP Missense_Mutation 1 43748740 C G 17 38 BRCA TCGA-AO-A0J4 PODN SNP Missense_Mutation 1 53535536 G C 33 54 BRCA TCGA-AO-A0J4 GBF1 SNP Missense_Mutation 10 104140919 C G 32 52 BRCA TCGA-AO-A0J4 RGR SNP Silent 10 86014115 C T 32 50 BRCA TCGA-AO-A0J4 LAYN SNP Missense_Mutation 11 111414758 G A 41 72 BRCA TCGA-AO-A0J4 MICAL2 SNP Silent 11 12225820 C G 24 44 BRCA TCGA-AO-A0J4 OR6X1 SNP Missense_Mutation 11 123624318 C G 29 52 BRCA TCGA-AO-A0J4 P2RY2 SNP Missense_Mutation 11 72946208 G A 35 51 BRCA TCGA-AO-A0J4 FAT3 SNP Missense_Mutation 11 92534655 G T 35 89 BRCA TCGA-AO-A0J4 GYS2 SNP Missense_Mutation 12 21716262 C T 23 100 BRCA TCGA-AO-A0J4 VWF SNP Missense_Mutation 12 6125930 T A 56 47 BRCA TCGA-AO-A0J4 NCAPD2 SNP Missense_Mutation 12 6637440 T C 55 90 BRCA TCGA-AO-A0J4 PPP1R12A SNP Missense_Mutation 12 80214707 C G 32 98 BRCA TCGA-AO-A0J4 EXD2 SNP Missense_Mutation 14 69704442 C G 30 72 BRCA TCGA-AO-A0J4 PCNX SNP Missense_Mutation 14 71514550 C A 28 87 BRCA TCGA-AO-A0J4 MEGF11 SNP Missense_Mutation 15 66420684 G C 35 79 BRCA TCGA-AO-A0J4 FAM219B SNP Missense_Mutation 15 75197529 G A 41 63 BRCA TCGA-AO-A0J4 TBC1D2B SNP Missense_Mutation 15 78290617 T C 54 87 BRCA TCGA-AO-A0J4 NTRK3 SNP Silent 15 88678459 G A 39 40 BRCA TCGA-AO-A0J4 DNAH3 SNP Missense_Mutation 16 20966319 G C 45 53 BRCA TCGA-AO-A0J4 ATMIN SNP Missense_Mutation 16 81078489 G T 45 80 BRCA TCGA-AO-A0J4 ACACA SNP Missense_Mutation 17 35563786 C G 29 80 BRCA TCGA-AO-A0J4 PRR11 SNP Missense_Mutation 17 57262479 A T 5 57 BRCA TCGA-AO-A0J4 TP53 SNP Missense_Mutation 17 7577094 G A 39 66 BRCA TCGA-AO-A0J4 NOL4 SNP Silent 18 31803107 G C 41 60 BRCA TCGA-AO-A0J4 EPS15L1 SNP Silent 19 16528786 C T 27 24 BRCA TCGA-AO-A0J4 SYNE4 SNP Missense_Mutation 19 36494306 G C 33 61 BRCA TCGA-AO-A0J4 LEUTX SNP Missense_Mutation 19 40276356 C T 27 51 BRCA TCGA-AO-A0J4 PLEKHA4 SNP Silent 19 49355488 G C 43 51 BRCA TCGA-AO-A0J4 XIRP2 SNP Missense_Mutation 2 168106882 G A 33 49 BRCA TCGA-AO-A0J4 LRP2 SNP Missense_Mutation 2 170063010 T C 60 80 BRCA TCGA-AO-A0J4 TTN SNP Missense_Mutation 2 179621321 G C 45 60 BRCA TCGA-AO-A0J4 SLC11A1 SNP Missense_Mutation 2 219255977 C A 17 80 BRCA TCGA-AO-A0J4 UGT1A3 SNP Silent 2 234638186 C T 29 51 BRCA TCGA-AO-A0J4 MSH6 SNP Missense_Mutation 2 48027198 A C 1 63 BRCA TCGA-AO-A0J4 OCSTAMP SNP Nonsense_Mutation 20 45174807 C T 21 87 BRCA TCGA-AO-A0J4 GART SNP Silent 21 34897279 C T 21 50 BRCA TCGA-AO-A0J4 SMTN SNP Missense_Mutation 22 31484057 G A 40 92 BRCA TCGA-AO-A0J4 L3MBTL2 SNP Missense_Mutation 22 41623175 C T 19 85 BRCA TCGA-AO-A0J4 GRAMD4 SNP Missense_Mutation 22 47064620 A T 3 83 BRCA TCGA-AO-A0J4 HNRNPH2 SNP Missense_Mutation 23 100668305 C A 20 51 BRCA TCGA-AO-A0J4 PPEF1 SNP Silent 23 18748318 C T 29 62 BRCA TCGA-AO-A0J4 KIF4A SNP Missense_Mutation 23 69521793 C G 20 67 BRCA TCGA-AO-A0J4 IQSEC1 SNP Missense_Mutation 3 12977153 C G 29 97 BRCA TCGA-AO-A0J4 DZIP1L SNP Missense_Mutation 3 137781705 C G 21 58 BRCA TCGA-AO-A0J4 MFN1 SNP Missense_Mutation 3 179094864 G C 45 98 BRCA TCGA-AO-A0J4 ABCF3 SNP Silent 3 183909040 T C 59 54 BRCA TCGA-AO-A0J4 LRRC33 SNP Missense_Mutation 3 196387122 G T 42 64 BRCA TCGA-AO-A0J4 GADL1 SNP Splice_Site 3 30892434 C A 20 90 BRCA TCGA-AO-A0J4 PPP4R2 SNP Missense_Mutation 3 73114268 G C 33 87 BRCA TCGA-AO-A0J4 SLIT2 DEL Frame_Shift_Del 4 20525795 G - 48 100 BRCA TCGA-AO-A0J4 LPHN3 SNP Silent 4 62778466 C T 24 60 BRCA TCGA-AO-A0J4 FAM190A SNP Nonsense_Mutation 4 91230078 C T 17 61 BRCA TCGA-AO-A0J4 LIFR SNP Silent 5 38496650 T C 49 34 BRCA TCGA-AO-A0J4 CKMT2 SNP Missense_Mutation 5 80553589 G C 45 100 BRCA TCGA-AO-A0J4 TNFAIP3 SNP Silent 6 138201278 G T 41 36 BRCA TCGA-AO-A0J4 PHACTR2 DEL In_Frame_Del 6 144093518 TGACTC - 51 54 BRCA TCGA-AO-A0J4 STXBP5 SNP Missense_Mutation 6 147680336 G A 41 97 BRCA TCGA-AO-A0J4 GMPR SNP Silent 6 16279067 T C 59 49 BRCA TCGA-AO-A0J4 PRPF4B SNP Missense_Mutation 6 4021684 C A 28 60 BRCA TCGA-AO-A0J4 MLL5 SNP Missense_Mutation 7 104753730 C A 17 82 BRCA TCGA-AO-A0J4 CNTNAP2 SNP Missense_Mutation 7 148112562 C T 23 98 BRCA TCGA-AO-A0J4 CPVL DEL In_Frame_Del 7 29103772 TCTGATTCCCCACGTGGA - 58 76 BRCA TCGA-AO-A0J4 USP42 SNP Missense_Mutation 7 6193520 C T 23 45 BRCA TCGA-AO-A0J4 TYW1 SNP Missense_Mutation 7 66474604 C A 30 60 BRCA TCGA-AO-A0J4 CLIP2 SNP Missense_Mutation 7 73790923 G A 40 82 BRCA TCGA-AO-A0J4 RGS22 SNP Nonsense_Mutation 8 101075866 G C 45 50 BRCA TCGA-AO-A0J4 ASAP1 SNP Silent 8 131140243 C G 29 87 BRCA TCGA-AO-A0J4 ADCY8 SNP Silent 8 132051962 G C 43 42 BRCA TCGA-AO-A0J4 LCN10 DEL Frame_Shift_Del 9 139634413 A - 11 63 BRCA TCGA-AO-A0J4 CACNA1B SNP Missense_Mutation 9 140938303 C T 23 53 BRCA TCGA-AO-A0J4 PSIP1 SNP Silent 9 15486061 C G 29 64 BRCA TCGA-AO-A0J5 CACNA1E SNP Nonsense_Mutation 1 181688962 C T 27 56 BRCA TCGA-AO-A0J5 FAM5C SNP Silent 1 190067727 A G 12 51 BRCA TCGA-AO-A0J5 CSMD2 SNP Nonsense_Mutation 1 34312489 G C 44 58 BRCA TCGA-AO-A0J5 LRRC7 SNP Missense_Mutation 1 70291446 C T 21 92 BRCA TCGA-AO-A0J5 LRRC7 SNP Missense_Mutation 1 70504659 G C 36 66 BRCA TCGA-AO-A0J5 SEC31B SNP Silent 10 102247412 C T 29 76 BRCA TCGA-AO-A0J5 GATA3 INS Frame_Shift_Ins 10 8111494 - CTGGAGG 54 91 BRCA TCGA-AO-A0J5 C10orf12 SNP Missense_Mutation 10 98744677 C T 26 54 BRCA TCGA-AO-A0J5 SLC1A2 SNP Missense_Mutation 11 35327749 G A 39 73 BRCA TCGA-AO-A0J5 AACS SNP Missense_Mutation 12 125561123 C G 17 61 BRCA TCGA-AO-A0J5 TMEM132D SNP Missense_Mutation 12 129559224 C A 24 43 BRCA TCGA-AO-A0J5 PIWIL1 SNP Silent 12 130831527 G A 45 59 BRCA TCGA-AO-A0J5 PDE3A SNP Silent 12 20799761 C T 19 44 BRCA TCGA-AO-A0J5 IFT88 INS Splice_site 13 21170288 - T 34 95 BRCA TCGA-AO-A0J5 TSC22D1 SNP Missense_Mutation 13 45148362 G T 41 67 BRCA TCGA-AO-A0J5 MAGEL2 SNP Missense_Mutation 15 23890432 C T 25 50 BRCA TCGA-AO-A0J5 IFT140 INS Frame_Shift_Ins 16 1561044 - C 59 29 BRCA TCGA-AO-A0J5 RNF222 SNP Missense_Mutation 17 8296596 G A 43 92 BRCA TCGA-AO-A0J5 ZNF69 SNP Missense_Mutation 19 12016540 C T 22 71 BRCA TCGA-AO-A0J5 SLC27A1 SNP Missense_Mutation 19 17608208 C T 19 59 BRCA TCGA-AO-A0J5 SSC5D SNP Silent 19 56029381 T C 50 48 BRCA TCGA-AO-A0J5 ITGA4 SNP Silent 2 182339924 G A 33 58 BRCA TCGA-AO-A0J5 DOCK10 SNP Missense_Mutation 2 225727415 C T 22 96 BRCA TCGA-AO-A0J5 BIRC6 SNP Missense_Mutation 2 32702619 T A 51 92 BRCA TCGA-AO-A0J5 PPM1B SNP Missense_Mutation 2 44457659 G A 46 85 BRCA TCGA-AO-A0J5 DYSF DEL Frame_Shift_Del 2 71738993 C - 30 53 BRCA TCGA-AO-A0J5 DYSF INS Frame_Shift_Ins 2 71739000 - A 22 48 BRCA TCGA-AO-A0J5 COX4I2 SNP Splice_Site 20 30227901 G A 48 84 BRCA TCGA-AO-A0J5 ZNF831 SNP Missense_Mutation 20 57768868 C A 24 55 BRCA TCGA-AO-A0J5 TOM1 SNP Missense_Mutation 22 35695926 A G 10 79 BRCA TCGA-AO-A0J5 CLCN4 SNP Silent 23 10181872 C T 30 56 BRCA TCGA-AO-A0J5 HDAC6 SNP Missense_Mutation 23 48674948 G T 45 67 BRCA TCGA-AO-A0J5 MSN SNP Silent 23 64958834 C T 22 49 BRCA TCGA-AO-A0J5 CXCR3 SNP Missense_Mutation 23 70836243 G T 44 79 BRCA TCGA-AO-A0J5 MBNL1 DEL Frame_Shift_Del 3 152177106 C - 18 98 BRCA TCGA-AO-A0J5 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-AO-A0J5 SETD5 SNP Splice_site 3 9484993 T A 59 94 BRCA TCGA-AO-A0J5 ANKRD55 SNP Nonsense_Mutation 5 55396075 G A 40 61 BRCA TCGA-AO-A0J5 HIVEP1 SNP Missense_Mutation 6 12125489 C T 18 75 BRCA TCGA-AO-A0J5 NUP205 SNP Missense_Mutation 7 135333164 G A 46 67 BRCA TCGA-AO-A0J5 LSM5 SNP Missense_Mutation 7 32529949 G A 37 97 BRCA TCGA-AO-A0J5 OXR1 SNP Splice_site 8 107726212 A T 11 92 BRCA TCGA-AO-A0J5 SCRIB DEL Frame_Shift_Del 8 144891156 C - 30 74 BRCA TCGA-AO-A0J5 DOCK5 SNP Missense_Mutation 8 25261154 G T 44 61 BRCA TCGA-AO-A0J5 PSIP1 INS Frame_Shift_Ins 9 15490113 - A 53 58 BRCA TCGA-AO-A0J6 BCL9 DEL Frame_Shift_Del 1 147092484 GGGG - 47 61 BRCA TCGA-AO-A0J6 BCL9 SNP Missense_Mutation 1 147092488 C T 27 85 BRCA TCGA-AO-A0J6 C1orf54 SNP Missense_Mutation 1 150246528 G A 45 57 BRCA TCGA-AO-A0J6 ZNF687 SNP Silent 1 151259889 C G 22 55 BRCA TCGA-AO-A0J6 INTS3 SNP Missense_Mutation 1 153734075 A T 3 87 BRCA TCGA-AO-A0J6 TAGLN2 SNP Missense_Mutation 1 159889125 C G 22 90 BRCA TCGA-AO-A0J6 USF1 SNP Splice_Site 1 161011904 A C 14 60 BRCA TCGA-AO-A0J6 TDRD5 SNP Missense_Mutation 1 179632507 G A 33 64 BRCA TCGA-AO-A0J6 FAM5C SNP Missense_Mutation 1 190068109 G A 33 82 BRCA TCGA-AO-A0J6 PIK3C2B SNP Missense_Mutation 1 204403609 C T 26 87 BRCA TCGA-AO-A0J6 RASSF5 SNP Missense_Mutation 1 206760274 G C 35 51 BRCA TCGA-AO-A0J6 USH2A SNP Missense_Mutation 1 216062079 T G 60 78 BRCA TCGA-AO-A0J6 OBSCN SNP Silent 1 228467646 C G 22 43 BRCA TCGA-AO-A0J6 KIAA1383 SNP Missense_Mutation 1 232942237 C G 17 50 BRCA TCGA-AO-A0J6 NID1 SNP Missense_Mutation 1 236205393 G C 33 54 BRCA TCGA-AO-A0J6 GJB5 SNP Missense_Mutation 1 35223621 C A 18 55 BRCA TCGA-AO-A0J6 HIVEP3 SNP Missense_Mutation 1 42046159 C A 28 100 BRCA TCGA-AO-A0J6 NSUN4 SNP Missense_Mutation 1 46818635 C G 29 57 BRCA TCGA-AO-A0J6 DIO1 SNP Silent 1 54371907 G A 34 58 BRCA TCGA-AO-A0J6 TCEANC2 SNP Silent 1 54534542 C A 21 53 BRCA TCGA-AO-A0J6 COX15 SNP Missense_Mutation 10 101483877 G C 33 95 BRCA TCGA-AO-A0J6 FAM53B SNP Nonsense_Mutation 10 126370497 G T 42 63 BRCA TCGA-AO-A0J6 OR52A5 SNP Missense_Mutation 11 5153708 G C 48 35 BRCA TCGA-AO-A0J6 OR51B4 SNP Missense_Mutation 11 5322935 C A 18 58 BRCA TCGA-AO-A0J6 AHNAK SNP Missense_Mutation 11 62288240 C G 18 57 BRCA TCGA-AO-A0J6 CHRM1 SNP Missense_Mutation 11 62678402 C A 32 71 BRCA TCGA-AO-A0J6 MRPL48 SNP Missense_Mutation 11 73574260 T A 49 79 BRCA TCGA-AO-A0J6 FBXO21 SNP Missense_Mutation 12 117604733 A G 8 91 BRCA TCGA-AO-A0J6 MPHOSPH9 SNP Missense_Mutation 12 123703035 G A 48 79 BRCA TCGA-AO-A0J6 DNAH10 DEL Frame_Shift_Del 12 124382415 CAGAAATTGAGGCG - 17 85 BRCA TCGA-AO-A0J6 SCARB1 SNP Missense_Mutation 12 125296490 G A 34 51 BRCA TCGA-AO-A0J6 TUBA1B SNP Missense_Mutation 12 49523054 C G 29 96 BRCA TCGA-AO-A0J6 SCN8A SNP Missense_Mutation 12 52182482 A C 2 88 BRCA TCGA-AO-A0J6 KRT4 SNP Missense_Mutation 12 53208015 T C 50 59 BRCA TCGA-AO-A0J6 NAP1L1 SNP Missense_Mutation 12 76453633 T A 49 69 BRCA TCGA-AO-A0J6 FAM90A1 SNP Missense_Mutation 12 8376138 C A 32 38 BRCA TCGA-AO-A0J6 C12orf55 DEL Frame_Shift_Del 12 97043730 ACAA - 6 48 BRCA TCGA-AO-A0J6 ARL11 SNP Missense_Mutation 13 50204809 G A 41 57 BRCA TCGA-AO-A0J6 FARP1 SNP Missense_Mutation 13 99061690 G A 37 80 BRCA TCGA-AO-A0J6 FRMD6 SNP Silent 14 52186813 G C 47 67 BRCA TCGA-AO-A0J6 GOLGA8J SNP Missense_Mutation 15 30435851 G A 42 65 BRCA TCGA-AO-A0J6 SNN SNP Missense_Mutation 16 11770041 C G 26 69 BRCA TCGA-AO-A0J6 PRKCB SNP Missense_Mutation 16 24183606 G T 48 98 BRCA TCGA-AO-A0J6 CES5A SNP Missense_Mutation 16 55903634 C T 18 91 BRCA TCGA-AO-A0J6 DNAH9 SNP Silent 17 11520810 G A 39 18 BRCA TCGA-AO-A0J6 WIPF2 SNP Silent 17 38412741 A T 6 24 BRCA TCGA-AO-A0J6 KRT19 SNP Missense_Mutation 17 39680125 C T 23 75 BRCA TCGA-AO-A0J6 GRB2 SNP Missense_Mutation 17 73316459 C T 23 83 BRCA TCGA-AO-A0J6 TP53 DEL Frame_Shift_Del 17 7578218 T - 59 88 BRCA TCGA-AO-A0J6 CLUL1 SNP Missense_Mutation 18 618071 G C 47 58 BRCA TCGA-AO-A0J6 DSEL DEL Frame_Shift_Del 18 65178887 C - 26 84 BRCA TCGA-AO-A0J6 ACP5 SNP Missense_Mutation 19 11686061 G C 46 54 BRCA TCGA-AO-A0J6 STX10 SNP Silent 19 13260582 G T 46 51 BRCA TCGA-AO-A0J6 OR10H4 SNP Missense_Mutation 19 16060433 G A 48 48 BRCA TCGA-AO-A0J6 UNC13A SNP Missense_Mutation 19 17768991 G A 40 93 BRCA TCGA-AO-A0J6 ZNF850 SNP Missense_Mutation 19 37239751 C A 21 54 BRCA TCGA-AO-A0J6 LTBP4 SNP Nonsense_Mutation 19 41133242 G T 45 66 BRCA TCGA-AO-A0J6 ATP1A3 SNP Missense_Mutation 19 42482310 C T 26 93 BRCA TCGA-AO-A0J6 PVRL2 SNP Missense_Mutation 19 45368575 C G 28 53 BRCA TCGA-AO-A0J6 IGFL4 DEL Frame_Shift_Del 19 46543640 CCTGGGCG - 18 48 BRCA TCGA-AO-A0J6 LRRC4B SNP Missense_Mutation 19 51021546 C A 18 48 BRCA TCGA-AO-A0J6 EPS8L1 SNP Missense_Mutation 19 55598949 G C 35 64 BRCA TCGA-AO-A0J6 EMR1 SNP Missense_Mutation 19 6926403 C A 30 39 BRCA TCGA-AO-A0J6 MED16 SNP Missense_Mutation 19 884973 G C 37 37 BRCA TCGA-AO-A0J6 PTPN18 DEL In_Frame_Del 2 131128528 CAT - 17 53 BRCA TCGA-AO-A0J6 LRP1B SNP Silent 2 141528484 T C 50 49 BRCA TCGA-AO-A0J6 CHRNA1 SNP Silent 2 175618463 G A 38 40 BRCA TCGA-AO-A0J6 TTN SNP Missense_Mutation 2 179442477 G C 44 54 BRCA TCGA-AO-A0J6 RHOB SNP Missense_Mutation 2 20647263 G T 37 88 BRCA TCGA-AO-A0J6 TET3 SNP Missense_Mutation 2 74274174 C A 18 67 BRCA TCGA-AO-A0J6 SIRPB1 SNP Missense_Mutation 20 1600536 G C 34 61 BRCA TCGA-AO-A0J6 C20orf26 SNP Silent 20 20232263 T C 51 51 BRCA TCGA-AO-A0J6 BPIFA2 SNP Missense_Mutation 20 31757009 T C 58 49 BRCA TCGA-AO-A0J6 SLC12A5 SNP Missense_Mutation 20 44669237 G T 37 83 BRCA TCGA-AO-A0J6 PLCB4 DEL In_Frame_Del 20 9319564 TGAAGC - 63 48 BRCA TCGA-AO-A0J6 SYNJ1 SNP Silent 21 34099183 C T 30 50 BRCA TCGA-AO-A0J6 SEZ6L SNP Missense_Mutation 22 26689012 A T 3 49 BRCA TCGA-AO-A0J6 CYP2D6 INS Frame_Shift_Ins 22 42525144 - T 26 50 BRCA TCGA-AO-A0J6 WWC3 DEL Frame_Shift_Del 23 10096136 GCTGGGTGTGCAGGAGAGA - 42 38 BRCA TCGA-AO-A0J6 NXF3 SNP Silent 23 102332671 C T 17 38 BRCA TCGA-AO-A0J6 NRK SNP Missense_Mutation 23 105149332 G A 39 68 BRCA TCGA-AO-A0J6 GRIA3 DEL Frame_Shift_Del 23 122532651 AATGGTAAAGACCAC - 1 77 BRCA TCGA-AO-A0J6 ARHGEF6 SNP Missense_Mutation 23 135764932 A T 6 54 BRCA TCGA-AO-A0J6 FXR1 SNP Missense_Mutation 3 180675642 G C 33 100 BRCA TCGA-AO-A0J6 NR1D2 SNP Nonsense_Mutation 3 24018854 C T 31 100 BRCA TCGA-AO-A0J6 NGLY1 SNP Missense_Mutation 3 25761640 A G 9 70 BRCA TCGA-AO-A0J6 WDR48 SNP Missense_Mutation 3 39118666 A G 4 54 BRCA TCGA-AO-A0J6 PLK4 SNP Missense_Mutation 4 128804612 G C 33 100 BRCA TCGA-AO-A0J6 SCLT1 SNP Missense_Mutation 4 129873937 G A 45 67 BRCA TCGA-AO-A0J6 FGFBP1 DEL Frame_Shift_Del 4 15938036 CAGTAGCAGCC - 29 58 BRCA TCGA-AO-A0J6 SCARB2 SNP Silent 4 77100835 C T 25 50 BRCA TCGA-AO-A0J6 MYO10 SNP Missense_Mutation 5 16818206 C T 26 98 BRCA TCGA-AO-A0J6 RANBP17 SNP Splice_site 5 170597134 G T 44 73 BRCA TCGA-AO-A0J6 LAMA2 SNP Missense_Mutation 6 129824389 G C 45 68 BRCA TCGA-AO-A0J6 TULP4 SNP Missense_Mutation 6 158924964 C A 26 84 BRCA TCGA-AO-A0J6 PI16 SNP Missense_Mutation 6 36931628 G C 40 25 BRCA TCGA-AO-A0J6 KLHDC3 SNP Missense_Mutation 6 42986630 A C 9 65 BRCA TCGA-AO-A0J6 PHF3 SNP Splice_site 6 64416113 C T 19 60 BRCA TCGA-AO-A0J6 COL19A1 SNP Silent 6 70610189 C G 24 47 BRCA TCGA-AO-A0J6 RIMS1 SNP Missense_Mutation 6 72960981 C T 17 100 BRCA TCGA-AO-A0J6 SNX13 SNP Missense_Mutation 7 17915306 T A 50 76 BRCA TCGA-AO-A0J6 TNRC18 SNP Missense_Mutation 7 5352742 C A 22 61 BRCA TCGA-AO-A0J6 EIF2AK1 SNP Splice_Site 7 6077156 C T 24 88 BRCA TCGA-AO-A0J6 C7orf62 SNP Silent 7 88424032 T A 55 43 BRCA TCGA-AO-A0J6 SLC45A4 SNP Missense_Mutation 8 142222615 C G 26 92 BRCA TCGA-AO-A0J6 NR4A3 SNP Silent 9 102590381 G A 38 50 BRCA TCGA-AO-A0J6 C9orf43 SNP Missense_Mutation 9 116191234 A C 7 49 BRCA TCGA-AO-A0J6 CNTLN SNP Missense_Mutation 9 17409379 G C 33 61 BRCA TCGA-AO-A0J6 IFNE SNP Missense_Mutation 9 21481513 G C 33 45 BRCA TCGA-AO-A0J7 VSIG8 SNP Missense_Mutation 1 159828534 C T 31 55 BRCA TCGA-AO-A0J7 NCSTN SNP Missense_Mutation 1 160323977 A G 1 49 BRCA TCGA-AO-A0J7 PGBD2 SNP Silent 1 249210906 G A 33 51 BRCA TCGA-AO-A0J7 ALOX5 SNP Nonsense_Mutation 10 45878089 G A 41 95 BRCA TCGA-AO-A0J7 STOX1 SNP Silent 10 70644128 C T 20 68 BRCA TCGA-AO-A0J7 PGR INS Frame_Shift_Ins 11 100996740 - C 62 79 BRCA TCGA-AO-A0J7 KCNH7 SNP Missense_Mutation 2 163302895 T C 60 92 BRCA TCGA-AO-A0J7 G6PC2 SNP Missense_Mutation 2 169757925 T A 61 56 BRCA TCGA-AO-A0J7 SH3BP4 SNP Missense_Mutation 2 235950945 G A 38 62 BRCA TCGA-AO-A0J7 TRMT2B SNP Nonsense_Mutation 23 100275554 G A 45 52 BRCA TCGA-AO-A0J7 PLXNA1 SNP Missense_Mutation 3 126752825 G A 41 81 BRCA TCGA-AO-A0J7 PIK3CA SNP Missense_Mutation 3 178936094 C A 25 98 BRCA TCGA-AO-A0J7 PRSS42 SNP Missense_Mutation 3 46873464 A G 8 60 BRCA TCGA-AO-A0J7 LOC100287294 SNP Missense_Mutation 7 57011894 G T 44 65 BRCA TCGA-AO-A0J7 INTS10 SNP Splice_Site 8 19679949 G A 35 94 BRCA TCGA-AO-A0J7 FAM205A SNP Missense_Mutation 9 34723329 G A 41 57 BRCA TCGA-AO-A0J7 S1PR3 SNP Silent 9 91616760 C T 19 48 BRCA TCGA-AO-A0J8 FLG SNP Missense_Mutation 1 152277116 C T 31 45 BRCA TCGA-AO-A0J8 PSEN2 SNP Missense_Mutation 1 227077759 A G 5 91 BRCA TCGA-AO-A0J8 FAAH SNP Missense_Mutation 1 46871162 C T 21 83 BRCA TCGA-AO-A0J8 FAAH SNP Silent 1 46874199 G C 39 27 BRCA TCGA-AO-A0J8 PNLIPRP1 SNP Missense_Mutation 10 118354350 G A 44 60 BRCA TCGA-AO-A0J8 ZMIZ1 SNP Missense_Mutation 10 81053147 A C 6 67 BRCA TCGA-AO-A0J8 MMS19 SNP Missense_Mutation 10 99223754 T A 52 49 BRCA TCGA-AO-A0J8 SLC41A2 SNP Missense_Mutation 12 105322236 C T 17 68 BRCA TCGA-AO-A0J8 ATP6V0A2 SNP Silent 12 124229203 G A 48 53 BRCA TCGA-AO-A0J8 MBD6 SNP Nonsense_Mutation 12 57922155 C T 23 64 BRCA TCGA-AO-A0J8 TSC22D1 SNP Nonsense_Mutation 13 45148149 G A 45 76 BRCA TCGA-AO-A0J8 DACT1 SNP Silent 14 59113588 C T 17 59 BRCA TCGA-AO-A0J8 CLMN SNP Missense_Mutation 14 95688048 T C 61 66 BRCA TCGA-AO-A0J8 CDH1 DEL Frame_Shift_Del 16 68857485 T - 52 73 BRCA TCGA-AO-A0J8 ZNF613 SNP Silent 19 52448195 C T 30 73 BRCA TCGA-AO-A0J8 FAM199X SNP Missense_Mutation 23 103430808 C T 21 96 BRCA TCGA-AO-A0J8 AMMECR1 DEL Frame_Shift_Del 23 109507722 AAGTGTGTACTCCCTGA - 13 77 BRCA TCGA-AO-A0J8 DOCK11 SNP Silent 23 117752580 G C 45 67 BRCA TCGA-AO-A0J8 SLC9A7 SNP Silent 23 46618330 C A 22 55 BRCA TCGA-AO-A0J8 ADH1A SNP Missense_Mutation 4 100205585 C G 21 90 BRCA TCGA-AO-A0J8 NDFIP1 SNP Missense_Mutation 5 141515313 C T 31 58 BRCA TCGA-AO-A0J8 PDZD2 SNP Missense_Mutation 5 31799549 A G 9 66 BRCA TCGA-AO-A0J8 NR2E1 SNP Missense_Mutation 6 108492770 G A 37 100 BRCA TCGA-AO-A0J8 WBSCR17 SNP Missense_Mutation 7 70597969 G T 41 87 BRCA TCGA-AO-A0J8 TPD52 SNP Silent 8 80992644 C T 19 32 BRCA TCGA-AO-A0J9 CHI3L2 SNP Missense_Mutation 1 111777558 C T 29 50 BRCA TCGA-AO-A0J9 GPATCH4 SNP Missense_Mutation 1 156565526 C G 32 65 BRCA TCGA-AO-A0J9 EDEM3 DEL Frame_Shift_Del 1 184695514 TTAAA - 64 73 BRCA TCGA-AO-A0J9 NFASC SNP Missense_Mutation 1 204923466 C G 17 75 BRCA TCGA-AO-A0J9 CELA3B SNP Missense_Mutation 1 22310738 G A 45 60 BRCA TCGA-AO-A0J9 MACF1 SNP Nonsense_Mutation 1 39798343 C G 29 75 BRCA TCGA-AO-A0J9 CPN1 SNP Missense_Mutation 10 101808562 C T 29 52 BRCA TCGA-AO-A0J9 DDX50 SNP Missense_Mutation 10 70666626 G T 33 58 BRCA TCGA-AO-A0J9 ZNF259 SNP Nonsense_Mutation 11 116655592 G A 45 66 BRCA TCGA-AO-A0J9 CORO1C SNP Missense_Mutation 12 109042522 G C 33 52 BRCA TCGA-AO-A0J9 ACACB SNP Missense_Mutation 12 109678904 A T 8 91 BRCA TCGA-AO-A0J9 SOX5 SNP Missense_Mutation 12 23687346 C T 28 100 BRCA TCGA-AO-A0J9 STK38L SNP Missense_Mutation 12 27461300 G A 38 93 BRCA TCGA-AO-A0J9 ANKS1B SNP Missense_Mutation 12 99447042 C T 29 96 BRCA TCGA-AO-A0J9 CCDC168 SNP Silent 13 103385449 C T 23 42 BRCA TCGA-AO-A0J9 LOC643677 SNP Missense_Mutation 13 103393346 A G 14 44 BRCA TCGA-AO-A0J9 USPL1 SNP Missense_Mutation 13 31233065 G A 45 49 BRCA TCGA-AO-A0J9 COMMD6 SNP Missense_Mutation 13 76111922 G A 39 53 BRCA TCGA-AO-A0J9 NDFIP2 SNP Missense_Mutation 13 80055541 C T 19 62 BRCA TCGA-AO-A0J9 MYH6 SNP Missense_Mutation 14 23871908 C G 31 93 BRCA TCGA-AO-A0J9 MIPOL1 SNP Silent 14 37838826 G A 45 72 BRCA TCGA-AO-A0J9 SYNE2 SNP Missense_Mutation 14 64580077 G A 45 39 BRCA TCGA-AO-A0J9 SIPA1L1 SNP Missense_Mutation 14 72139081 G A 48 100 BRCA TCGA-AO-A0J9 LTBP2 SNP Silent 14 74995673 G A 33 54 BRCA TCGA-AO-A0J9 SEL1L SNP Silent 14 81953845 C T 29 59 BRCA TCGA-AO-A0J9 GABRG3 SNP Missense_Mutation 15 27777879 G A 46 100 BRCA TCGA-AO-A0J9 GOLGA8J SNP Silent 15 30435865 C A 29 49 BRCA TCGA-AO-A0J9 FBN1 SNP Silent 15 48780599 G A 34 58 BRCA TCGA-AO-A0J9 CCP110 SNP Silent 16 19547333 C T 29 58 BRCA TCGA-AO-A0J9 NDRG4 SNP Silent 16 58538514 C T 31 25 BRCA TCGA-AO-A0J9 CDH1 DEL Frame_Shift_Del 16 68849648 G - 47 83 BRCA TCGA-AO-A0J9 MTMR4 SNP Missense_Mutation 17 56573225 C A 28 50 BRCA TCGA-AO-A0J9 KPNA2 SNP Missense_Mutation 17 66036815 G A 45 97 BRCA TCGA-AO-A0J9 RNMTL1 SNP Silent 17 685930 G A 45 51 BRCA TCGA-AO-A0J9 DNAH2 SNP Missense_Mutation 17 7627002 G C 33 60 BRCA TCGA-AO-A0J9 THOC1 SNP Missense_Mutation 18 247878 C T 29 81 BRCA TCGA-AO-A0J9 CDH19 SNP Splice_Site 18 64211462 C T 32 95 BRCA TCGA-AO-A0J9 IL27RA SNP Missense_Mutation 19 14143266 C G 32 49 BRCA TCGA-AO-A0J9 ZNF486 SNP Silent 19 20308257 C T 32 45 BRCA TCGA-AO-A0J9 PSG4 SNP Missense_Mutation 19 43699378 C G 32 60 BRCA TCGA-AO-A0J9 OBSL1 DEL Frame_Shift_Del 2 220432006 G - 33 62 BRCA TCGA-AO-A0J9 SPTBN1 SNP Silent 2 54874276 G A 33 79 BRCA TCGA-AO-A0J9 TRPC4AP SNP Missense_Mutation 20 33609154 T C 51 52 BRCA TCGA-AO-A0J9 CPNE1 SNP Missense_Mutation 20 34215288 G A 37 65 BRCA TCGA-AO-A0J9 SPINLW1-WFDC6 SNP Silent 20 44166723 G A 47 53 BRCA TCGA-AO-A0J9 CSE1L SNP Missense_Mutation 20 47686760 G A 45 100 BRCA TCGA-AO-A0J9 C20orf43 SNP Missense_Mutation 20 55043817 G C 45 97 BRCA TCGA-AO-A0J9 SCAF4 SNP Missense_Mutation 21 33067193 A G 6 72 BRCA TCGA-AO-A0J9 PI4KA SNP Missense_Mutation 22 21159370 G C 33 89 BRCA TCGA-AO-A0J9 PRR14L SNP Missense_Mutation 22 32111820 C T 29 51 BRCA TCGA-AO-A0J9 TSC22D3 SNP Missense_Mutation 23 107018376 G A 39 71 BRCA TCGA-AO-A0J9 LRRC3B SNP Silent 3 26751433 G A 45 52 BRCA TCGA-AO-A0J9 DNAH12 SNP Missense_Mutation 3 57443474 G A 45 82 BRCA TCGA-AO-A0J9 ANKRD17 SNP Missense_Mutation 4 74019654 T C 51 90 BRCA TCGA-AO-A0J9 FNIP1 SNP Missense_Mutation 5 130841179 C T 30 100 BRCA TCGA-AO-A0J9 LRRTM2 SNP Missense_Mutation 5 138210089 G A 45 74 BRCA TCGA-AO-A0J9 PCDHB10 SNP Missense_Mutation 5 140573243 G T 33 52 BRCA TCGA-AO-A0J9 SREK1IP1 SNP Missense_Mutation 5 64050168 C T 32 77 BRCA TCGA-AO-A0J9 MAST4 SNP Missense_Mutation 5 66438062 G A 45 100 BRCA TCGA-AO-A0J9 AGGF1 SNP Missense_Mutation 5 76349934 G A 45 69 BRCA TCGA-AO-A0J9 RHOBTB3 SNP Missense_Mutation 5 95128768 G C 33 79 BRCA TCGA-AO-A0J9 ERAP2 SNP Missense_Mutation 5 96237303 G A 39 67 BRCA TCGA-AO-A0J9 TFAP2A SNP Missense_Mutation 6 10404880 C T 31 86 BRCA TCGA-AO-A0J9 AIM1 SNP Silent 6 106967048 T A 53 47 BRCA TCGA-AO-A0J9 PHF3 SNP Missense_Mutation 6 64422600 A C 9 58 BRCA TCGA-AO-A0J9 RARS2 SNP Missense_Mutation 6 88299660 G A 37 75 BRCA TCGA-AO-A0J9 FOXP2 SNP Missense_Mutation 7 114329880 G A 45 99 BRCA TCGA-AO-A0J9 KLHDC10 SNP Missense_Mutation 7 129761906 A T 8 90 BRCA TCGA-AO-A0J9 NEUROD6 SNP Missense_Mutation 7 31378659 C G 32 77 BRCA TCGA-AO-A0J9 PCLO SNP Missense_Mutation 7 82595715 G A 45 59 BRCA TCGA-AO-A0J9 CYP3A7 SNP Missense_Mutation 7 99308411 G A 45 49 BRCA TCGA-AO-A0J9 RNF19A SNP Missense_Mutation 8 101272152 T C 60 76 BRCA TCGA-AO-A0J9 UBR5 SNP Missense_Mutation 8 103291157 C T 32 100 BRCA TCGA-AO-A0J9 EIF3E SNP Silent 8 109260902 G A 37 61 BRCA TCGA-AO-A0J9 DNM1 SNP Missense_Mutation 9 130982538 G T 37 98 BRCA TCGA-AO-A0J9 ODF2 SNP Silent 9 131256860 G A 37 40 BRCA TCGA-AO-A0J9 IFNA13 SNP Silent 9 21367848 C T 29 49 BRCA TCGA-AO-A0J9 TLN1 SNP Missense_Mutation 9 35705643 C G 32 100 BRCA TCGA-AO-A0J9 UBQLN1 SNP Silent 9 86294885 C T 32 59 BRCA TCGA-AO-A0J9 ECM2 SNP Missense_Mutation 9 95277306 C G 32 49 BRCA TCGA-AO-A0JA F5 SNP Missense_Mutation 1 169511852 C T 32 50 BRCA TCGA-AO-A0JA ZNF683 SNP Missense_Mutation 1 26688342 G T 47 65 BRCA TCGA-AO-A0JA RLF INS Frame_Shift_Ins 1 40701837 - A 29 100 BRCA TCGA-AO-A0JA PTEN SNP Nonsense_Mutation 10 89692780 T A 50 56 BRCA TCGA-AO-A0JA RAB39A SNP Missense_Mutation 11 107833060 G A 45 98 BRCA TCGA-AO-A0JA EXPH5 SNP Missense_Mutation 11 108383532 G A 47 53 BRCA TCGA-AO-A0JA MICALCL INS In_Frame_Ins 11 12316344 - CTC 34 54 BRCA TCGA-AO-A0JA MUC5B SNP Missense_Mutation 11 1266662 C G 31 49 BRCA TCGA-AO-A0JA FLRT1 SNP Silent 11 63883862 C T 29 49 BRCA TCGA-AO-A0JA CPT1A SNP Silent 11 68574941 G A 33 53 BRCA TCGA-AO-A0JA NUMA1 SNP Missense_Mutation 11 71717272 G A 37 82 BRCA TCGA-AO-A0JA EID3 SNP Missense_Mutation 12 104698208 G A 45 53 BRCA TCGA-AO-A0JA ITPR2 SNP Missense_Mutation 12 26749818 C T 29 97 BRCA TCGA-AO-A0JA C16orf88 SNP Silent 16 19725551 C T 32 49 BRCA TCGA-AO-A0JA GPS2 DEL Frame_Shift_Del 17 7217872 CTTC - 32 86 BRCA TCGA-AO-A0JA SNP Missense_Mutation 19 35862781 T C 55 44 BRCA TCGA-AO-A0JA IZUMO2 SNP Silent 19 50661562 C T 30 48 BRCA TCGA-AO-A0JA OR7G1 SNP Silent 19 9225564 C T 29 71 BRCA TCGA-AO-A0JA IL18RAP SNP Missense_Mutation 2 103040327 G C 48 34 BRCA TCGA-AO-A0JA NEU2 DEL Frame_Shift_Del 2 233899336 AGCCACCTCCG - 3 75 BRCA TCGA-AO-A0JA ASTL SNP Silent 2 96798409 C T 27 38 BRCA TCGA-AO-A0JA MORC4 SNP Missense_Mutation 23 106229353 G T 41 94 BRCA TCGA-AO-A0JA MAP3K15 SNP Missense_Mutation 23 19478185 C T 23 73 BRCA TCGA-AO-A0JA ZBED1 SNP Silent 23 2408413 G A 40 52 BRCA TCGA-AO-A0JA MYLK SNP Missense_Mutation 3 123444902 G A 43 80 BRCA TCGA-AO-A0JA PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-AO-A0JA COL7A1 SNP Silent 3 48625779 C A 27 43 BRCA TCGA-AO-A0JA BMPR1B SNP Silent 4 96052584 C T 32 89 BRCA TCGA-AO-A0JA LYSMD3 DEL Frame_Shift_Del 5 89815239 AGACCTAAGGGCA - 15 52 BRCA TCGA-AO-A0JA DNAH11 SNP Silent 7 21784508 G T 46 50 BRCA TCGA-AO-A0JA CSMD1 SNP Nonsense_Mutation 8 2910130 G T 45 78 BRCA TCGA-AO-A0JA CSMD1 SNP Missense_Mutation 8 3245175 C G 30 99 BRCA TCGA-AO-A0JB FRRS1 SNP Silent 1 100177695 A G 4 43 BRCA TCGA-AO-A0JB LCE1F SNP Missense_Mutation 1 152749130 T C 55 69 BRCA TCGA-AO-A0JB SPTA1 SNP Missense_Mutation 1 158653171 T C 62 88 BRCA TCGA-AO-A0JB DENND1B SNP Missense_Mutation 1 197481050 T G 56 49 BRCA TCGA-AO-A0JB USH2A SNP Missense_Mutation 1 215848573 T C 58 66 BRCA TCGA-AO-A0JB OBSCN SNP Missense_Mutation 1 228492905 G C 34 74 BRCA TCGA-AO-A0JB GCSAML SNP Missense_Mutation 1 247712349 C A 22 51 BRCA TCGA-AO-A0JB ENSG00000231472 SNP Missense_Mutation 10 1382470 G A 39 58 BRCA TCGA-AO-A0JB HERC4 SNP Splice_site 10 69684843 C A 17 49 BRCA TCGA-AO-A0JB FAM22D SNP Missense_Mutation 10 89117989 T C 55 41 BRCA TCGA-AO-A0JB LIPN SNP Missense_Mutation 10 90537956 G A 39 61 BRCA TCGA-AO-A0JB SIK2 SNP Missense_Mutation 11 111575768 C T 27 71 BRCA TCGA-AO-A0JB GLB1L3 SNP Missense_Mutation 11 134151330 T G 55 80 BRCA TCGA-AO-A0JB UCP2 SNP Missense_Mutation 11 73689330 A T 3 78 BRCA TCGA-AO-A0JB SRRM4 SNP Missense_Mutation 12 119552154 G A 39 76 BRCA TCGA-AO-A0JB PIP4K2C DEL Frame_Shift_Del 12 57994199 GAAGCTGAAGAGAGATGTGGAGGT - 33 55 BRCA TCGA-AO-A0JB PZP SNP Splice_site 12 9307212 C A 24 81 BRCA TCGA-AO-A0JB COL4A1 SNP Splice_site 13 110859238 C T 22 70 BRCA TCGA-AO-A0JB DNAJC3 SNP Missense_Mutation 13 96395018 C G 24 53 BRCA TCGA-AO-A0JB AP1G2 SNP Missense_Mutation 14 24035107 G T 44 57 BRCA TCGA-AO-A0JB SYNDIG1L SNP Silent 14 74874370 G A 36 70 BRCA TCGA-AO-A0JB SERPINA4 SNP Missense_Mutation 14 95030369 G A 37 48 BRCA TCGA-AO-A0JB MGA SNP Missense_Mutation 15 42034982 T A 49 64 BRCA TCGA-AO-A0JB UBR1 SNP Missense_Mutation 15 43347026 C A 20 52 BRCA TCGA-AO-A0JB ST20-MTHFS SNP Silent 15 80181580 G A 34 52 BRCA TCGA-AO-A0JB ANKS4B DEL In_Frame_Del 16 21261170 GATAATGACTTACAGACTCCACTGGATGCT - 41 100 BRCA TCGA-AO-A0JB NUP93 SNP Silent 16 56782315 C T 22 55 BRCA TCGA-AO-A0JB ZNF319 SNP Missense_Mutation 16 58031098 G C 36 84 BRCA TCGA-AO-A0JB B3GNT9 SNP Missense_Mutation 16 67183643 G A 38 51 BRCA TCGA-AO-A0JB SERPINF1 SNP Missense_Mutation 17 1675177 A C 1 74 BRCA TCGA-AO-A0JB CUEDC1 SNP Missense_Mutation 17 55962645 C A 28 50 BRCA TCGA-AO-A0JB LPO SNP Missense_Mutation 17 56342263 C G 29 65 BRCA TCGA-AO-A0JB TP53 SNP Nonsense_Mutation 17 7578212 G A 37 66 BRCA TCGA-AO-A0JB CDH19 SNP Missense_Mutation 18 64239322 T G 54 53 BRCA TCGA-AO-A0JB ZNF407 SNP Missense_Mutation 18 72343892 G C 33 48 BRCA TCGA-AO-A0JB LPHN1 SNP Silent 19 14263360 A C 6 25 BRCA TCGA-AO-A0JB SUGP2 SNP Silent 19 19115425 G A 45 67 BRCA TCGA-AO-A0JB PSG9 SNP Missense_Mutation 19 43762251 A C 8 41 BRCA TCGA-AO-A0JB ZNF671 SNP Missense_Mutation 19 58232832 C T 29 54 BRCA TCGA-AO-A0JB SCN3A SNP Missense_Mutation 2 165948952 A C 8 93 BRCA TCGA-AO-A0JB HOXD3 SNP Missense_Mutation 2 177034213 C G 23 97 BRCA TCGA-AO-A0JB TTN DEL Frame_Shift_Del 2 179399740 TCAGAATGGAAATTTCCTTCTTTACCAAAACCTGA - 62 93 BRCA TCGA-AO-A0JB COL6A3 SNP Silent 2 238283233 G A 37 25 BRCA TCGA-AO-A0JB C2orf16 SNP Missense_Mutation 2 27803116 C A 28 53 BRCA TCGA-AO-A0JB CEP68 SNP Missense_Mutation 2 65299282 C T 20 57 BRCA TCGA-AO-A0JB LOXL3 SNP Missense_Mutation 2 74762843 C T 20 81 BRCA TCGA-AO-A0JB GPAT2 SNP Silent 2 96689096 G A 48 59 BRCA TCGA-AO-A0JB RIN2 SNP Silent 20 19970723 G A 35 52 BRCA TCGA-AO-A0JB SEMG1 SNP Missense_Mutation 20 43836891 C A 20 49 BRCA TCGA-AO-A0JB SON DEL Frame_Shift_Del 21 34924699 T - 55 51 BRCA TCGA-AO-A0JB RAB9B SNP Missense_Mutation 23 103080633 C T 19 92 BRCA TCGA-AO-A0JB COL4A6 SNP Missense_Mutation 23 107408206 C T 23 92 BRCA TCGA-AO-A0JB RGAG1 SNP Missense_Mutation 23 109694149 C A 22 58 BRCA TCGA-AO-A0JB GPR64 SNP Missense_Mutation 23 19031863 G A 33 63 BRCA TCGA-AO-A0JB TBX22 SNP Missense_Mutation 23 79282218 A G 8 79 BRCA TCGA-AO-A0JB DNAJB8 SNP Missense_Mutation 3 128181749 A C 2 61 BRCA TCGA-AO-A0JB DBR1 SNP Silent 3 137890542 C A 21 44 BRCA TCGA-AO-A0JB KCNIP4 SNP Missense_Mutation 4 20734354 G T 41 100 BRCA TCGA-AO-A0JB GRK4 SNP Silent 4 3029685 A G 3 60 BRCA TCGA-AO-A0JB GCM2 SNP Missense_Mutation 6 10877583 A C 15 79 BRCA TCGA-AO-A0JB C6orf70 SNP Missense_Mutation 6 170155510 T G 64 56 BRCA TCGA-AO-A0JB BTN3A3 SNP Missense_Mutation 6 26443819 C A 30 50 BRCA TCGA-AO-A0JB TNXB SNP Silent 6 32029331 G A 48 63 BRCA TCGA-AO-A0JB KCNK5 SNP Missense_Mutation 6 39162506 G C 42 77 BRCA TCGA-AO-A0JB HTR1B DEL Frame_Shift_Del 6 78172741 G - 37 83 BRCA TCGA-AO-A0JB HECW1 SNP Silent 7 43590049 G A 39 39 BRCA TCGA-AO-A0JB AEBP1 SNP Missense_Mutation 7 44150599 C A 20 77 BRCA TCGA-AO-A0JB CCDC132 DEL Frame_Shift_Del 7 92952973 ATTC - 16 68 BRCA TCGA-AO-A0JB CSMD3 SNP Missense_Mutation 8 113702256 C A 29 100 BRCA TCGA-AO-A0JB USP17L2 INS Frame_Shift_Ins 8 11996135 - G 7 54 BRCA TCGA-AO-A0JB ATAD2 SNP Silent 8 124351573 A C 11 53 BRCA TCGA-AO-A0JB EPB41L4B SNP Missense_Mutation 9 111938882 G A 41 81 BRCA TCGA-AO-A0JB TLR4 SNP Missense_Mutation 9 120475992 A G 6 71 BRCA TCGA-AO-A0JB PRRC2B SNP Missense_Mutation 9 134343003 C T 18 60 BRCA TCGA-AO-A0JB TUBB4B SNP Missense_Mutation 9 140137915 G A 45 85 BRCA TCGA-AO-A0JB ANKRD20A2 DEL Frame_Shift_Del 9 42410305 AA - 5 64 BRCA TCGA-AO-A0JC MST1P9 SNP Missense_Mutation 1 17086155 C A 26 52 BRCA TCGA-AO-A0JC FAAH SNP Silent 1 46871356 C T 31 46 BRCA TCGA-AO-A0JC DLG5 SNP Silent 10 79593779 C T 29 58 BRCA TCGA-AO-A0JC SCGB1C1 SNP Missense_Mutation 11 193146 G A 46 60 BRCA TCGA-AO-A0JC TMEM117 SNP Missense_Mutation 12 44238710 C A 32 69 BRCA TCGA-AO-A0JC CDH24 SNP Missense_Mutation 14 23518908 C G 21 71 BRCA TCGA-AO-A0JC MKRN3 SNP Silent 15 23811712 C T 30 54 BRCA TCGA-AO-A0JC RPL3L SNP Silent 16 2000884 C T 32 58 BRCA TCGA-AO-A0JC AARS SNP Missense_Mutation 16 70292941 G C 41 71 BRCA TCGA-AO-A0JC B3GNT3 SNP Silent 19 17922586 G A 45 57 BRCA TCGA-AO-A0JC ERCC2 SNP Splice_site 19 45856502 C G 30 83 BRCA TCGA-AO-A0JC ERCC2 SNP Silent 19 45856512 C T 32 59 BRCA TCGA-AO-A0JC SYT3 SNP Missense_Mutation 19 51132727 G T 45 80 BRCA TCGA-AO-A0JC ZNF280C SNP Missense_Mutation 23 129377634 C G 32 44 BRCA TCGA-AO-A0JC TRIML1 SNP Silent 4 189061102 G A 35 60 BRCA TCGA-AO-A0JC TERT SNP Silent 5 1282594 G C 33 50 BRCA TCGA-AO-A0JC CREBRF SNP Missense_Mutation 5 172537628 G C 35 57 BRCA TCGA-AO-A0JC GPR98 SNP Missense_Mutation 5 89979505 G C 45 78 BRCA TCGA-AO-A0JC ABCA1 INS Splice_Site 9 107556793 - AAA 53 92 BRCA TCGA-AO-A0JD FLG SNP Missense_Mutation 1 152279089 C A 28 41 BRCA TCGA-AO-A0JD FLG SNP Missense_Mutation 1 152281708 T C 59 47 BRCA TCGA-AO-A0JD AQP10 SNP Missense_Mutation 1 154295794 C A 30 97 BRCA TCGA-AO-A0JD KIAA1614 SNP Missense_Mutation 1 180905471 C A 18 77 BRCA TCGA-AO-A0JD GLT25D2 SNP Missense_Mutation 1 183944313 G T 47 100 BRCA TCGA-AO-A0JD KCNK2 SNP Missense_Mutation 1 215259971 A G 8 57 BRCA TCGA-AO-A0JD OR14A16 SNP Missense_Mutation 1 247978926 C A 25 59 BRCA TCGA-AO-A0JD OR2L2 SNP Missense_Mutation 1 248201996 A G 12 66 BRCA TCGA-AO-A0JD OR2L2 SNP Nonsense_Mutation 1 248202362 C T 27 50 BRCA TCGA-AO-A0JD KIAA1462 SNP Missense_Mutation 10 30316733 T A 56 43 BRCA TCGA-AO-A0JD TACR2 SNP Missense_Mutation 10 71174803 A T 7 79 BRCA TCGA-AO-A0JD CNTN5 SNP Silent 11 100211931 T A 60 42 BRCA TCGA-AO-A0JD ATG13 SNP Nonsense_Mutation 11 46686403 C A 29 67 BRCA TCGA-AO-A0JD C11orf24 SNP Silent 11 68029197 C G 25 53 BRCA TCGA-AO-A0JD USP35 SNP Missense_Mutation 11 77921182 G A 40 75 BRCA TCGA-AO-A0JD FAT3 SNP Nonsense_Mutation 11 92087136 G T 45 85 BRCA TCGA-AO-A0JD MYBPC1 SNP Missense_Mutation 12 102074250 T A 55 92 BRCA TCGA-AO-A0JD WSCD2 SNP Missense_Mutation 12 108589649 C T 23 49 BRCA TCGA-AO-A0JD WSCD2 SNP Missense_Mutation 12 108589656 C A 24 96 BRCA TCGA-AO-A0JD SSH1 SNP Silent 12 109181920 C A 19 32 BRCA TCGA-AO-A0JD UNG SNP Missense_Mutation 12 109536289 C A 22 69 BRCA TCGA-AO-A0JD FGF6 SNP Silent 12 4554431 G C 39 51 BRCA TCGA-AO-A0JD TUBA1C SNP Missense_Mutation 12 49663336 A T 7 86 BRCA TCGA-AO-A0JD KCNA1 SNP Missense_Mutation 12 5021221 C T 19 97 BRCA TCGA-AO-A0JD PAN2 SNP Missense_Mutation 12 56720592 C A 30 98 BRCA TCGA-AO-A0JD MYO16 SNP Silent 13 109672250 C T 19 39 BRCA TCGA-AO-A0JD COL4A1 SNP Missense_Mutation 13 110822920 C T 30 94 BRCA TCGA-AO-A0JD PRHOXNB SNP Silent 13 28562661 G A 33 65 BRCA TCGA-AO-A0JD ESD SNP Missense_Mutation 13 47354159 C G 28 100 BRCA TCGA-AO-A0JD RNF219 SNP Missense_Mutation 13 79209283 T G 57 56 BRCA TCGA-AO-A0JD SLITRK5 SNP Silent 13 88328771 C T 23 48 BRCA TCGA-AO-A0JD AKAP13 SNP Missense_Mutation 15 86122377 G A 36 49 BRCA TCGA-AO-A0JD RCCD1 SNP Missense_Mutation 15 91504977 C T 28 69 BRCA TCGA-AO-A0JD ZNF598 SNP Missense_Mutation 16 2048361 C A 30 93 BRCA TCGA-AO-A0JD PRSS22 SNP Missense_Mutation 16 2903883 C G 30 42 BRCA TCGA-AO-A0JD PRSS36 SNP Missense_Mutation 16 31155122 C T 23 64 BRCA TCGA-AO-A0JD CHD9 SNP Missense_Mutation 16 53191289 C G 29 61 BRCA TCGA-AO-A0JD KCNG4 SNP Missense_Mutation 16 84271027 G A 35 86 BRCA TCGA-AO-A0JD KRTAP1-5 SNP Missense_Mutation 17 39182972 G C 36 57 BRCA TCGA-AO-A0JD NOL11 SNP Missense_Mutation 17 65734083 C G 32 65 BRCA TCGA-AO-A0JD NOL11 SNP Missense_Mutation 17 65734254 C T 32 66 BRCA TCGA-AO-A0JD WIPI1 SNP Missense_Mutation 17 66426165 C T 23 97 BRCA TCGA-AO-A0JD KIAA0195 SNP Nonsense_Mutation 17 73485372 C T 23 76 BRCA TCGA-AO-A0JD ITGB4 SNP Missense_Mutation 17 73736913 C G 28 51 BRCA TCGA-AO-A0JD GALR2 SNP Missense_Mutation 17 74073151 G T 38 59 BRCA TCGA-AO-A0JD TP53 SNP Missense_Mutation 17 7578271 T A 51 76 BRCA TCGA-AO-A0JD ZNF532 SNP Silent 18 56586092 G T 40 43 BRCA TCGA-AO-A0JD BEST2 INS Frame_Shift_Ins 19 12868799 - T 26 59 BRCA TCGA-AO-A0JD PGLYRP2 SNP Silent 19 15587331 A T 3 41 BRCA TCGA-AO-A0JD ZNF208 SNP Missense_Mutation 19 22156700 T C 56 26 BRCA TCGA-AO-A0JD ZNF585B SNP Splice_site 19 37681051 C T 30 48 BRCA TCGA-AO-A0JD FBXO27 SNP Missense_Mutation 19 39516146 A C 1 58 BRCA TCGA-AO-A0JD CYP2A13 SNP Missense_Mutation 19 41600885 C A 28 68 BRCA TCGA-AO-A0JD ATP1A3 SNP Missense_Mutation 19 42482824 C T 31 77 BRCA TCGA-AO-A0JD ZNF229 SNP Missense_Mutation 19 44933197 G A 35 52 BRCA TCGA-AO-A0JD BCL3 SNP Missense_Mutation 19 45259541 G T 44 51 BRCA TCGA-AO-A0JD C19orf10 SNP Missense_Mutation 19 4668614 G T 44 81 BRCA TCGA-AO-A0JD VRK3 SNP Splice_Site 19 50510825 C A 18 62 BRCA TCGA-AO-A0JD ETFB SNP Silent 19 51857488 G A 37 51 BRCA TCGA-AO-A0JD KIR2DS4 SNP Silent 19 55351148 G A 40 59 BRCA TCGA-AO-A0JD REV1 SNP Missense_Mutation 2 100019354 G C 35 70 BRCA TCGA-AO-A0JD MERTK SNP Nonsense_Mutation 2 112779075 C T 21 100 BRCA TCGA-AO-A0JD SSB SNP Silent 2 170663549 G A 36 51 BRCA TCGA-AO-A0JD MPP4 SNP Missense_Mutation 2 202512439 T A 58 76 BRCA TCGA-AO-A0JD SPEG SNP Silent 2 220355614 C A 22 55 BRCA TCGA-AO-A0JD COL4A4 SNP Silent 2 227872836 G A 38 40 BRCA TCGA-AO-A0JD SPHKAP SNP Nonsense_Mutation 2 228884271 A T 4 56 BRCA TCGA-AO-A0JD THNSL2 SNP Missense_Mutation 2 88474185 T C 62 89 BRCA TCGA-AO-A0JD WFDC8 SNP Missense_Mutation 20 44180679 C G 30 45 BRCA TCGA-AO-A0JD PROKR2 SNP Silent 20 5294674 G A 40 44 BRCA TCGA-AO-A0JD PCK1 SNP Missense_Mutation 20 56138123 C A 19 100 BRCA TCGA-AO-A0JD FERMT1 SNP Missense_Mutation 20 6088271 A G 11 92 BRCA TCGA-AO-A0JD KRTAP10-9 SNP Missense_Mutation 21 46047456 A C 7 52 BRCA TCGA-AO-A0JD PRAME SNP Missense_Mutation 22 22890679 C T 20 56 BRCA TCGA-AO-A0JD MLC1 SNP Missense_Mutation 22 50518384 A G 1 86 BRCA TCGA-AO-A0JD DOCK11 SNP Splice_Site 23 117758501 G A 33 93 BRCA TCGA-AO-A0JD UPF3B SNP Missense_Mutation 23 118971887 G A 38 78 BRCA TCGA-AO-A0JD MAGEA10 SNP Missense_Mutation 23 151303066 C T 30 53 BRCA TCGA-AO-A0JD PNMA5 SNP Missense_Mutation 23 152159875 C T 30 53 BRCA TCGA-AO-A0JD MECP2 SNP Missense_Mutation 23 153295952 C G 27 52 BRCA TCGA-AO-A0JD BCOR SNP Missense_Mutation 23 39933528 G T 41 57 BRCA TCGA-AO-A0JD USP9X SNP Missense_Mutation 23 41043260 C T 19 81 BRCA TCGA-AO-A0JD ATP7A INS In_Frame_Ins 23 77268498 - CTA 62 52 BRCA TCGA-AO-A0JD SIDT1 SNP Missense_Mutation 3 113345058 T G 62 83 BRCA TCGA-AO-A0JD GRAMD1C SNP Missense_Mutation 3 113595081 A T 16 88 BRCA TCGA-AO-A0JD EPHB1 SNP Missense_Mutation 3 134885809 G A 48 100 BRCA TCGA-AO-A0JD VPS8 SNP Missense_Mutation 3 184566859 A T 12 92 BRCA TCGA-AO-A0JD RNF123 SNP Missense_Mutation 3 49757963 G A 36 88 BRCA TCGA-AO-A0JD USP53 SNP Missense_Mutation 4 120192520 A G 8 54 BRCA TCGA-AO-A0JD LRAT SNP Silent 4 155665892 C T 19 49 BRCA TCGA-AO-A0JD PCDHB5 SNP Silent 5 140516843 G A 39 47 BRCA TCGA-AO-A0JD DCTN4 SNP Missense_Mutation 5 150110686 T G 56 60 BRCA TCGA-AO-A0JD ZFR SNP Nonsense_Mutation 5 32390509 C A 30 96 BRCA TCGA-AO-A0JD SEMA5A SNP Nonsense_Mutation 5 9066543 G T 34 75 BRCA TCGA-AO-A0JD KIAA0408 SNP Nonstop_Mutation 6 127765377 A G 15 49 BRCA TCGA-AO-A0JD NUP153 SNP Silent 6 17629106 T C 56 51 BRCA TCGA-AO-A0JD VARS SNP Splice_site 6 31759746 C A 17 61 BRCA TCGA-AO-A0JD ZNF76 SNP Splice_Site 6 35258417 G A 35 99 BRCA TCGA-AO-A0JD DAAM2 SNP Silent 6 39869125 G A 34 71 BRCA TCGA-AO-A0JD KLC4 SNP Missense_Mutation 6 43039931 C T 27 88 BRCA TCGA-AO-A0JD EYS DEL Frame_Shift_Del 6 66205226 C - 26 52 BRCA TCGA-AO-A0JD DSP SNP Missense_Mutation 6 7576652 A T 12 77 BRCA TCGA-AO-A0JD DPP6 SNP Silent 7 154664350 A C 14 67 BRCA TCGA-AO-A0JD CHST12 SNP Silent 7 2473033 C T 23 32 BRCA TCGA-AO-A0JD ZNF804B SNP Missense_Mutation 7 88963433 G T 41 56 BRCA TCGA-AO-A0JD TRRAP SNP Missense_Mutation 7 98579427 G C 35 51 BRCA TCGA-AO-A0JD RNF19A SNP Missense_Mutation 8 101273937 C G 24 51 BRCA TCGA-AO-A0JD XKR6 SNP Silent 8 10755617 T G 56 88 BRCA TCGA-AO-A0JD PCM1 SNP Splice_site 8 17872349 T G 51 54 BRCA TCGA-AO-A0JD CHRNA6 SNP Missense_Mutation 8 42611543 C A 30 100 BRCA TCGA-AO-A0JD FAM92A1 SNP Missense_Mutation 8 94738722 G T 48 63 BRCA TCGA-AO-A0JD MSANTD3-TMEFF1 SNP Silent 9 103334854 C G 32 56 BRCA TCGA-AO-A0JD NDOR1 SNP Missense_Mutation 9 140109063 C T 31 54 BRCA TCGA-AO-A0JE UBL4B SNP Missense_Mutation 1 110655404 A C 6 36 BRCA TCGA-AO-A0JE PGLYRP3 SNP Missense_Mutation 1 153274985 C T 27 56 BRCA TCGA-AO-A0JE FCER1A SNP Missense_Mutation 1 159277697 C T 24 48 BRCA TCGA-AO-A0JE DCAF8 SNP Missense_Mutation 1 160251960 T C 63 73 BRCA TCGA-AO-A0JE LYST SNP Missense_Mutation 1 235973301 C T 19 50 BRCA TCGA-AO-A0JE PLD5 SNP Missense_Mutation 1 242253277 G A 39 55 BRCA TCGA-AO-A0JE OR2G6 SNP Missense_Mutation 1 248685560 G A 36 50 BRCA TCGA-AO-A0JE SESN2 SNP Silent 1 28599955 C A 22 57 BRCA TCGA-AO-A0JE MMP13 SNP Silent 11 102822757 C A 30 50 BRCA TCGA-AO-A0JE TRIM5 SNP Silent 11 5686165 G A 45 51 BRCA TCGA-AO-A0JE C11orf30 SNP Missense_Mutation 11 76227289 C G 29 67 BRCA TCGA-AO-A0JE CIT SNP Missense_Mutation 12 120152115 C T 27 100 BRCA TCGA-AO-A0JE POLE SNP Missense_Mutation 12 133226445 G T 41 75 BRCA TCGA-AO-A0JE OSBPL8 SNP Missense_Mutation 12 76778063 C A 18 100 BRCA TCGA-AO-A0JE IRF9 SNP Nonsense_Mutation 14 24633978 C T 25 60 BRCA TCGA-AO-A0JE UNC79 SNP Missense_Mutation 14 94060170 G A 45 67 BRCA TCGA-AO-A0JE BLM SNP Missense_Mutation 15 91346773 G T 36 80 BRCA TCGA-AO-A0JE KIAA0430 INS Frame_Shift_Ins 16 15696474 - G 11 51 BRCA TCGA-AO-A0JE SLC6A4 SNP Silent 17 28545924 G A 45 75 BRCA TCGA-AO-A0JE PLXDC1 SNP Silent 17 37226190 G T 41 52 BRCA TCGA-AO-A0JE TP53 SNP Missense_Mutation 17 7578190 T C 49 88 BRCA TCGA-AO-A0JE MIB1 SNP Missense_Mutation 18 19348649 G C 33 99 BRCA TCGA-AO-A0JE PPP2R1A SNP Splice_site 19 52729060 T G 55 54 BRCA TCGA-AO-A0JE ZNF587 SNP Missense_Mutation 19 58370864 C T 31 52 BRCA TCGA-AO-A0JE LRP2 SNP Missense_Mutation 2 170060576 T C 63 66 BRCA TCGA-AO-A0JE TTN SNP Missense_Mutation 2 179466427 T C 61 90 BRCA TCGA-AO-A0JE NT5C1B-RDH14 SNP Missense_Mutation 2 18765887 C T 31 66 BRCA TCGA-AO-A0JE MYT1L SNP Missense_Mutation 2 1891341 C G 32 97 BRCA TCGA-AO-A0JE SLC39A10 SNP Splice_Site 2 196578278 G T 44 77 BRCA TCGA-AO-A0JE SNAP25 SNP Missense_Mutation 20 10277623 G C 41 100 BRCA TCGA-AO-A0JE WFDC5 SNP Missense_Mutation 20 43739335 G A 43 76 BRCA TCGA-AO-A0JE DOPEY2 SNP Silent 21 37617884 C T 30 39 BRCA TCGA-AO-A0JE GAS2L1 SNP Silent 22 29707827 G A 43 56 BRCA TCGA-AO-A0JE MORC4 SNP Silent 23 106205310 G T 45 49 BRCA TCGA-AO-A0JE PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-AO-A0JE ZNF620 SNP Nonsense_Mutation 3 40557522 C G 29 53 BRCA TCGA-AO-A0JE MAGI1 SNP Silent 3 65361490 G C 43 58 BRCA TCGA-AO-A0JE DNAH5 SNP Missense_Mutation 5 13862717 G A 37 99 BRCA TCGA-AO-A0JE ATP6V0E1 SNP Missense_Mutation 5 172410873 C G 29 50 BRCA TCGA-AO-A0JE DSE SNP Missense_Mutation 6 116757429 G C 33 89 BRCA TCGA-AO-A0JE BTN1A1 SNP Missense_Mutation 6 26509153 C G 32 54 BRCA TCGA-AO-A0JE TREML1 SNP Missense_Mutation 6 41121613 G T 34 60 BRCA TCGA-AO-A0JE DEFB112 SNP Silent 6 50016314 T C 63 47 BRCA TCGA-AO-A0JE C6orf165 SNP Missense_Mutation 6 88136307 G C 41 72 BRCA TCGA-AO-A0JE LRGUK SNP Missense_Mutation 7 133906651 C T 29 66 BRCA TCGA-AO-A0JE MLL3 SNP Nonsense_Mutation 7 151919733 C A 29 100 BRCA TCGA-AO-A0JE ZHX2 SNP Silent 8 123964821 G A 45 52 BRCA TCGA-AO-A0JE ZNF572 SNP Missense_Mutation 8 125989495 C G 29 52 BRCA TCGA-AO-A0JE SQLE SNP Silent 8 126021464 G C 37 35 BRCA TCGA-AO-A0JF TCHH SNP Silent 1 152082576 C T 32 67 BRCA TCGA-AO-A0JF PMVK SNP Missense_Mutation 1 154898884 G A 39 78 BRCA TCGA-AO-A0JF EPHX1 SNP Missense_Mutation 1 226026417 C T 26 72 BRCA TCGA-AO-A0JF ZNF692 SNP Silent 1 249151656 C T 25 54 BRCA TCGA-AO-A0JF DYDC2 DEL In_Frame_Del 10 82126466 CCACGA - 30 74 BRCA TCGA-AO-A0JF RNF169 SNP Missense_Mutation 11 74546883 G A 38 95 BRCA TCGA-AO-A0JF ASUN SNP Missense_Mutation 12 27069033 T C 50 94 BRCA TCGA-AO-A0JF HAL SNP Missense_Mutation 12 96380925 C G 20 65 BRCA TCGA-AO-A0JF MAP2K4 SNP Missense_Mutation 17 12044530 C G 24 76 BRCA TCGA-AO-A0JF TNS4 SNP Silent 17 38643408 G T 38 49 BRCA TCGA-AO-A0JF FAM136A SNP Silent 2 70524439 G A 33 50 BRCA TCGA-AO-A0JF ETS2 SNP Missense_Mutation 21 40186843 T C 55 91 BRCA TCGA-AO-A0JF CABIN1 SNP Silent 22 24480534 G A 47 69 BRCA TCGA-AO-A0JF MAGED2 INS Frame_Shift_Ins 23 54841196 - T 36 51 BRCA TCGA-AO-A0JF PIK3CA SNP Missense_Mutation 3 178928079 G A 33 98 BRCA TCGA-AO-A0JF PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-AO-A0JF RNF14 INS In_Frame_Ins 5 141359713 - AGG 61 77 BRCA TCGA-AO-A0JF MAP3K1 DEL Frame_Shift_Del 5 56161191 T - 52 86 BRCA TCGA-AO-A0JF MAP3K1 SNP Splice_site 5 56183347 G A 35 94 BRCA TCGA-AO-A0JF EDN1 SNP Missense_Mutation 6 12296218 T A 58 79 BRCA TCGA-AO-A0JF PKHD1 SNP Silent 6 51944778 G A 33 46 BRCA TCGA-AO-A0JF ZNF292 SNP Missense_Mutation 6 87967879 A G 8 60 BRCA TCGA-AO-A0JF ABCF2 SNP Silent 7 150921061 C T 22 60 BRCA TCGA-AO-A0JF MLL3 DEL Frame_Shift_Del 7 151945622 C - 29 57 BRCA TCGA-AO-A0JF PEX2 SNP Missense_Mutation 8 77895511 C T 20 57 BRCA TCGA-AO-A0JF NECAB1 SNP Silent 8 91962098 T C 57 49 BRCA TCGA-AO-A0JG OXCT2 SNP Missense_Mutation 1 40235514 C A 19 62 BRCA TCGA-AO-A0JG LRRC7 SNP Missense_Mutation 1 70505003 T C 60 76 BRCA TCGA-AO-A0JG GATA3 INS Frame_Shift_Ins 10 8115930 - C 50 89 BRCA TCGA-AO-A0JG DSCAML1 DEL Frame_Shift_Del 11 117391869 C - 30 99 BRCA TCGA-AO-A0JG QSER1 SNP Missense_Mutation 11 32953798 G A 42 75 BRCA TCGA-AO-A0JG C14orf101 SNP Missense_Mutation 14 57051723 A T 2 66 BRCA TCGA-AO-A0JG BCMO1 SNP Missense_Mutation 16 81295772 G C 37 97 BRCA TCGA-AO-A0JG FLII DEL Frame_Shift_Del 17 18155034 C - 26 100 BRCA TCGA-AO-A0JG SLC13A2 SNP Missense_Mutation 17 26820713 C A 24 52 BRCA TCGA-AO-A0JG UBE2Z SNP Missense_Mutation 17 46988234 A G 8 89 BRCA TCGA-AO-A0JG NAGK SNP Missense_Mutation 2 71303763 T C 53 51 BRCA TCGA-AO-A0JG CTCFL SNP Silent 20 56087795 G C 46 50 BRCA TCGA-AO-A0JG CT47B1 SNP Missense_Mutation 23 120008768 C T 30 47 BRCA TCGA-AO-A0JG MAP3K13 DEL Frame_Shift_Del 3 185198098 G - 35 56 BRCA TCGA-AO-A0JG CLCN3 SNP Missense_Mutation 4 170628374 A T 12 62 BRCA TCGA-AO-A0JG SRP72 SNP Missense_Mutation 4 57333838 G A 46 71 BRCA TCGA-AO-A0JG PIK3R1 SNP Missense_Mutation 5 67589230 C A 18 78 BRCA TCGA-AO-A0JG RANBP9 SNP Missense_Mutation 6 13659036 C G 24 100 BRCA TCGA-AO-A0JG KLC4 DEL Frame_Shift_Del 6 43034120 C - 18 97 BRCA TCGA-AO-A0JG EPHA7 SNP Translation_Start_Site 6 94129274 G T 33 70 BRCA TCGA-AO-A0JG PRRT4 SNP Missense_Mutation 7 127991340 G C 35 75 BRCA TCGA-AO-A0JG MLL3 SNP Missense_Mutation 7 151948034 C T 30 84 BRCA TCGA-AO-A0JI PCNXL2 DEL Splice_Site 1 233136049 A - 14 80 BRCA TCGA-AO-A0JI OR2G3 SNP Missense_Mutation 1 247769321 C T 25 50 BRCA TCGA-AO-A0JI OR2T33 SNP Missense_Mutation 1 248436408 C A 25 50 BRCA TCGA-AO-A0JI MCMBP SNP Missense_Mutation 10 121591584 C T 23 100 BRCA TCGA-AO-A0JI SYNPO2L SNP Missense_Mutation 10 75408227 G A 38 59 BRCA TCGA-AO-A0JI NUMA1 SNP Missense_Mutation 11 71715744 G T 44 66 BRCA TCGA-AO-A0JI NUMA1 SNP Missense_Mutation 11 71715762 T C 54 69 BRCA TCGA-AO-A0JI RPL13AP20 SNP Silent 12 13028844 C T 32 77 BRCA TCGA-AO-A0JI OVCH1 SNP Nonsense_Mutation 12 29604408 C T 22 67 BRCA TCGA-AO-A0JI WNK1 DEL In_Frame_Del 12 977684 CACCTATCAGTA - 25 74 BRCA TCGA-AO-A0JI CRABP1 SNP Missense_Mutation 15 78633419 G C 39 38 BRCA TCGA-AO-A0JI CDH11 SNP Missense_Mutation 16 65032486 C T 19 95 BRCA TCGA-AO-A0JI GSPT2 SNP Missense_Mutation 23 51488353 A C 6 82 BRCA TCGA-AO-A0JI COL7A1 SNP Silent 3 48609590 G A 44 51 BRCA TCGA-AO-A0JI PRICKLE2 SNP Missense_Mutation 3 64133064 C T 31 100 BRCA TCGA-AO-A0JI SLC4A4 SNP Splice_site 4 72429510 T C 58 89 BRCA TCGA-AO-A0JI NIM1 SNP Missense_Mutation 5 43277278 G A 37 100 BRCA TCGA-AO-A0JI SLC45A4 SNP Silent 8 142228731 G A 40 41 BRCA TCGA-AO-A0JI PTAR1 SNP Missense_Mutation 9 72338284 A C 3 94 BRCA TCGA-AO-A0JJ SYPL2 SNP Missense_Mutation 1 110020512 G A 37 100 BRCA TCGA-AO-A0JJ C10orf71 SNP Silent 10 50532174 A G 11 44 BRCA TCGA-AO-A0JJ SERPINA4 SNP Missense_Mutation 14 95030303 G A 40 51 BRCA TCGA-AO-A0JJ UNC13C SNP Nonsense_Mutation 15 54825146 C T 17 90 BRCA TCGA-AO-A0JJ CDH1 DEL Frame_Shift_Del 16 68846121 AGTCACT - 7 17 BRCA TCGA-AO-A0JJ CENPBD1 SNP Missense_Mutation 16 90038155 T G 50 62 BRCA TCGA-AO-A0JJ DNASE2 SNP Missense_Mutation 19 12989624 C A 22 56 BRCA TCGA-AO-A0JJ CPT1C SNP Splice_site 19 50208555 G T 35 80 BRCA TCGA-AO-A0JJ MERTK SNP Silent 2 112786351 C T 22 49 BRCA TCGA-AO-A0JJ ACTG2 SNP Missense_Mutation 2 74146651 G T 34 56 BRCA TCGA-AO-A0JJ SRXN1 SNP Missense_Mutation 20 629434 A T 12 84 BRCA TCGA-AO-A0JJ NCF4 SNP Missense_Mutation 22 37273825 C T 19 85 BRCA TCGA-AO-A0JJ TAF1 SNP Silent 23 70678132 T A 54 51 BRCA TCGA-AO-A0JJ STK32B SNP Splice_site 4 5399971 G A 39 72 BRCA TCGA-AO-A0JJ ERBB2IP SNP Missense_Mutation 5 65370946 A T 8 89 BRCA TCGA-AO-A0JJ MED23 DEL Frame_Shift_Del 6 131914256 CTCATTGAATCTC - 20 72 BRCA TCGA-AO-A0JJ BTN2A3 SNP Missense_Mutation 6 26431261 G T 33 55 BRCA TCGA-AO-A0JJ ACTB SNP Missense_Mutation 7 5567503 C G 27 86 BRCA TCGA-AO-A0JJ ZNF655 DEL Frame_Shift_Del 7 99161497 CGCCTTCCCA - 23 66 BRCA TCGA-AO-A0JJ KCNT1 SNP Missense_Mutation 9 138662242 G A 38 62 BRCA TCGA-AO-A0JL SYT11 SNP Missense_Mutation 1 155838473 G A 38 100 BRCA TCGA-AO-A0JL CCT3 SNP Missense_Mutation 1 156280863 T G 63 76 BRCA TCGA-AO-A0JL CCT3 SNP Nonsense_Mutation 1 156280869 T A 64 76 BRCA TCGA-AO-A0JL IFI16 SNP Missense_Mutation 1 158984681 G T 33 51 BRCA TCGA-AO-A0JL DUSP27 SNP Missense_Mutation 1 167088559 G A 39 86 BRCA TCGA-AO-A0JL PIGR SNP Missense_Mutation 1 207107989 T C 57 52 BRCA TCGA-AO-A0JL PGBD5 DEL Frame_Shift_Del 1 230503753 CCACG - 22 52 BRCA TCGA-AO-A0JL CCDC27 SNP Missense_Mutation 1 3670779 C T 18 59 BRCA TCGA-AO-A0JL HPDL SNP Missense_Mutation 1 45793452 G T 41 85 BRCA TCGA-AO-A0JL FAM196A SNP Missense_Mutation 10 128973678 G C 43 49 BRCA TCGA-AO-A0JL OPN4 SNP Missense_Mutation 10 88418373 G T 40 63 BRCA TCGA-AO-A0JL ENTPD1 SNP Missense_Mutation 10 97626096 C T 28 36 BRCA TCGA-AO-A0JL BTG4 SNP Silent 11 111367981 T C 60 53 BRCA TCGA-AO-A0JL OR5I1 SNP Missense_Mutation 11 55703345 G A 45 63 BRCA TCGA-AO-A0JL DPP3 SNP Missense_Mutation 11 66259056 C T 30 96 BRCA TCGA-AO-A0JL PDE1B SNP Missense_Mutation 12 54967460 A G 3 88 BRCA TCGA-AO-A0JL IKZF4 SNP Missense_Mutation 12 56428812 T G 63 58 BRCA TCGA-AO-A0JL INHBC SNP Nonsense_Mutation 12 57843320 C T 21 72 BRCA TCGA-AO-A0JL NAV3 SNP Missense_Mutation 12 78570996 G A 33 100 BRCA TCGA-AO-A0JL RBM23 SNP Missense_Mutation 14 23374660 T C 54 67 BRCA TCGA-AO-A0JL TRIP11 SNP Missense_Mutation 14 92472173 A G 8 59 BRCA TCGA-AO-A0JL CIITA SNP Missense_Mutation 16 10995394 G C 33 68 BRCA TCGA-AO-A0JL IFT140 SNP Missense_Mutation 16 1633329 G A 38 48 BRCA TCGA-AO-A0JL HS3ST2 SNP Silent 16 22926832 G A 40 50 BRCA TCGA-AO-A0JL SEZ6L2 SNP Silent 16 29899946 C G 23 45 BRCA TCGA-AO-A0JL CDH11 SNP Missense_Mutation 16 64984859 G A 35 73 BRCA TCGA-AO-A0JL PRMT7 SNP Missense_Mutation 16 68387405 G A 39 79 BRCA TCGA-AO-A0JL MTSS1L SNP Missense_Mutation 16 70708357 C G 20 71 BRCA TCGA-AO-A0JL SHPK SNP Missense_Mutation 17 3514195 G C 35 73 BRCA TCGA-AO-A0JL GP1BA SNP Silent 17 4837204 C T 21 50 BRCA TCGA-AO-A0JL ABCA10 SNP Silent 17 67181631 G A 37 60 BRCA TCGA-AO-A0JL GLOD4 SNP Missense_Mutation 17 685426 G A 37 80 BRCA TCGA-AO-A0JL TP53 SNP Nonsense_Mutation 17 7577022 G A 38 61 BRCA TCGA-AO-A0JL CELF4 SNP Missense_Mutation 18 34850769 G A 38 94 BRCA TCGA-AO-A0JL POLI SNP Missense_Mutation 18 51797757 C T 21 46 BRCA TCGA-AO-A0JL RTTN SNP Silent 18 67759382 A G 3 36 BRCA TCGA-AO-A0JL HMHA1 SNP Missense_Mutation 19 1079999 G C 45 87 BRCA TCGA-AO-A0JL ZNF254 SNP Missense_Mutation 19 24289416 A G 3 31 BRCA TCGA-AO-A0JL MAP4K1 SNP Missense_Mutation 19 39088168 C T 30 61 BRCA TCGA-AO-A0JL ZNF419 SNP Silent 19 58004585 G A 34 50 BRCA TCGA-AO-A0JL ZNF550 SNP Silent 19 58058369 G A 33 57 BRCA TCGA-AO-A0JL BIN1 SNP Silent 2 127806129 G A 39 29 BRCA TCGA-AO-A0JL NCKAP5 SNP Silent 2 133541246 G A 47 45 BRCA TCGA-AO-A0JL RIF1 SNP Missense_Mutation 2 152273161 A G 12 61 BRCA TCGA-AO-A0JL CHD6 SNP Silent 20 40081463 C T 31 41 BRCA TCGA-AO-A0JL BRD1 DNP Splice_site 22 50192208 CC AT 30 99 BRCA TCGA-AO-A0JL IDS SNP Silent 23 148571918 G T 37 35 BRCA TCGA-AO-A0JL KLF8 SNP Missense_Mutation 23 56291989 G T 34 87 BRCA TCGA-AO-A0JL CD80 SNP Silent 3 119263560 G A 39 38 BRCA TCGA-AO-A0JL TM4SF1 SNP Missense_Mutation 3 149095219 G C 41 60 BRCA TCGA-AO-A0JL ANKRD28 SNP Missense_Mutation 3 15755061 A G 3 92 BRCA TCGA-AO-A0JL NMD3 SNP Missense_Mutation 3 160952568 G T 36 71 BRCA TCGA-AO-A0JL SI SNP Splice_Site 3 164785127 C T 17 89 BRCA TCGA-AO-A0JL FXR1 DEL Frame_Shift_Del 3 180686028 CCTC - 30 86 BRCA TCGA-AO-A0JL ZNF502 SNP Missense_Mutation 3 44762851 G C 33 55 BRCA TCGA-AO-A0JL NIPAL1 SNP Missense_Mutation 4 48027169 T A 59 49 BRCA TCGA-AO-A0JL WDFY3 SNP Silent 4 85648059 C T 32 58 BRCA TCGA-AO-A0JL EMB SNP Missense_Mutation 5 49695122 C A 20 47 BRCA TCGA-AO-A0JL GRM1 SNP Missense_Mutation 6 146755726 G A 41 79 BRCA TCGA-AO-A0JL ARID1B SNP Missense_Mutation 6 157528561 G T 48 100 BRCA TCGA-AO-A0JL HLA-G SNP Missense_Mutation 6 29797650 T A 56 61 BRCA TCGA-AO-A0JL CAGE1 SNP Missense_Mutation 6 7373460 A G 16 46 BRCA TCGA-AO-A0JL PTPRZ1 SNP Missense_Mutation 7 121612627 A T 7 76 BRCA TCGA-AO-A0JL PARP12 SNP Missense_Mutation 7 139724642 G T 46 58 BRCA TCGA-AO-A0JL JHDM1D SNP Missense_Mutation 7 139796372 T G 50 61 BRCA TCGA-AO-A0JL HGF SNP Missense_Mutation 7 81346551 G A 37 77 BRCA TCGA-AO-A0JL MYC SNP Splice_site 8 128748840 C G 28 55 BRCA TCGA-AO-A0JL ZNF658 SNP Missense_Mutation 9 40774730 G C 34 53 BRCA TCGA-AO-A0JM PTCHD2 SNP Missense_Mutation 1 11561792 G A 40 76 BRCA TCGA-AO-A0JM TCHHL1 SNP Missense_Mutation 1 152057778 C A 22 49 BRCA TCGA-AO-A0JM MDM4 SNP Silent 1 204513770 T G 55 53 BRCA TCGA-AO-A0JM DOCK7 SNP Missense_Mutation 1 62979249 C A 28 100 BRCA TCGA-AO-A0JM MTF2 SNP Missense_Mutation 1 93594865 G C 33 80 BRCA TCGA-AO-A0JM ACTA2 SNP Missense_Mutation 10 90701048 C T 31 100 BRCA TCGA-AO-A0JM ATM SNP Nonsense_Mutation 11 108235935 C T 19 60 BRCA TCGA-AO-A0JM SNX6 SNP Silent 14 35045013 G C 45 56 BRCA TCGA-AO-A0JM SYNE2 SNP Missense_Mutation 14 64428284 T A 53 91 BRCA TCGA-AO-A0JM SRSF5 SNP Missense_Mutation 14 70235927 C T 31 77 BRCA TCGA-AO-A0JM SRCAP SNP Silent 16 30718895 G A 47 49 BRCA TCGA-AO-A0JM PHLPP2 DEL Frame_Shift_Del 16 71697861 CC - 26 49 BRCA TCGA-AO-A0JM ADAMTS18 SNP Missense_Mutation 16 77334207 T A 49 86 BRCA TCGA-AO-A0JM CTU2 SNP Silent 16 88780165 C T 29 79 BRCA TCGA-AO-A0JM ANKRD11 SNP Silent 16 89349983 G A 39 29 BRCA TCGA-AO-A0JM GOSR1 SNP Nonsense_Mutation 17 28817222 C T 19 78 BRCA TCGA-AO-A0JM SLFN13 DNP Missense_Mutation 17 33772617 TC AA 62 64 BRCA TCGA-AO-A0JM CHST9 INS Frame_Shift_Ins 18 24496830 - A 57 60 BRCA TCGA-AO-A0JM FBXO27 SNP Missense_Mutation 19 39517580 T C 55 58 BRCA TCGA-AO-A0JM PLD3 SNP Missense_Mutation 19 40882650 G A 40 59 BRCA TCGA-AO-A0JM FSD1 SNP Missense_Mutation 19 4311943 G A 40 74 BRCA TCGA-AO-A0JM GTF3C3 SNP Missense_Mutation 2 197662581 C T 29 79 BRCA TCGA-AO-A0JM TTLL4 SNP Missense_Mutation 2 219617532 G A 39 74 BRCA TCGA-AO-A0JM WDR69 SNP Silent 2 228769656 C T 23 40 BRCA TCGA-AO-A0JM RASSF2 SNP Silent 20 4776604 G A 40 46 BRCA TCGA-AO-A0JM CDH4 SNP Silent 20 60348142 C T 19 51 BRCA TCGA-AO-A0JM ADAMTS5 SNP Missense_Mutation 21 28337771 C G 26 79 BRCA TCGA-AO-A0JM GTSE1 SNP Missense_Mutation 22 46712078 G A 37 46 BRCA TCGA-AO-A0JM ARHGAP36 SNP Missense_Mutation 23 130220600 C T 23 53 BRCA TCGA-AO-A0JM C3orf20 SNP Silent 3 14725873 C T 27 28 BRCA TCGA-AO-A0JM CHL1 SNP Missense_Mutation 3 404937 C T 27 60 BRCA TCGA-AO-A0JM GBE1 SNP Missense_Mutation 3 81698093 G C 33 85 BRCA TCGA-AO-A0JM GABRR3 SNP Silent 3 97726675 C G 17 53 BRCA TCGA-AO-A0JM PCDHA1 SNP Missense_Mutation 5 140167371 T G 59 73 BRCA TCGA-AO-A0JM TFAP2A SNP Missense_Mutation 6 10398921 A C 9 93 BRCA TCGA-AO-A0JM HIVEP1 SNP Missense_Mutation 6 12124632 C T 19 51 BRCA TCGA-AO-A0JM BRPF3 DNP Missense_Mutation 6 36178148 TT AG 64 65 BRCA TCGA-AO-A0JM FBXO24 SNP Missense_Mutation 7 100187289 G T 39 51 BRCA TCGA-AO-A0JM C7orf53 SNP Missense_Mutation 7 112124906 G A 42 49 BRCA TCGA-AO-A0JM C7orf60 SNP Nonsense_Mutation 7 112462138 C T 30 100 BRCA TCGA-AO-A0JM UBE3C SNP Missense_Mutation 7 156979555 A G 8 65 BRCA TCGA-AO-A0JM PPP1R9A SNP Missense_Mutation 7 94915619 A C 15 46 BRCA TCGA-AO-A0JM PRKDC SNP Missense_Mutation 8 48761994 T G 56 86 BRCA TCGA-AO-A0JM ADAMTS13 SNP Silent 9 136319570 C T 21 60 BRCA TCGA-AO-A0JM SNP Missense_Mutation 9 90744581 C T 19 46 BRCA TCGA-AO-A124 RNPC3 SNP Missense_Mutation 1 104068843 G C 39 87 BRCA TCGA-AO-A124 HIPK1 SNP Missense_Mutation 1 114483129 T G 49 63 BRCA TCGA-AO-A124 ATAD3B SNP Silent 1 1426042 G A 48 65 BRCA TCGA-AO-A124 ANKRD35 SNP Missense_Mutation 1 145558223 G A 33 76 BRCA TCGA-AO-A124 NBPF14 SNP Missense_Mutation 1 148004597 A T 6 47 BRCA TCGA-AO-A124 SHE SNP Missense_Mutation 1 154458425 G A 42 95 BRCA TCGA-AO-A124 SPTA1 SNP Missense_Mutation 1 158646004 C A 32 91 BRCA TCGA-AO-A124 OR6K2 SNP Missense_Mutation 1 158669493 G T 47 52 BRCA TCGA-AO-A124 MNDA DEL Frame_Shift_Del 1 158818988 G - 35 51 BRCA TCGA-AO-A124 F5 SNP Missense_Mutation 1 169511128 G A 37 76 BRCA TCGA-AO-A124 RC3H1 SNP Silent 1 173916616 C G 17 33 BRCA TCGA-AO-A124 IER5 SNP Silent 1 181058077 C A 32 64 BRCA TCGA-AO-A124 SLC30A1 SNP Missense_Mutation 1 211751857 G A 37 63 BRCA TCGA-AO-A124 DNAH14 SNP Splice_Site 1 225140371 G A 34 54 BRCA TCGA-AO-A124 OBSCN SNP Missense_Mutation 1 228503574 G C 41 95 BRCA TCGA-AO-A124 LYST DEL Frame_Shift_Del 1 235909818 TTTCGAGGACC - 64 63 BRCA TCGA-AO-A124 RYR2 SNP Silent 1 237801707 G A 48 51 BRCA TCGA-AO-A124 RYR2 SNP Missense_Mutation 1 237947615 G T 34 70 BRCA TCGA-AO-A124 CEP170 SNP Missense_Mutation 1 243327823 T C 50 72 BRCA TCGA-AO-A124 OR13G1 SNP Missense_Mutation 1 247836055 G T 47 79 BRCA TCGA-AO-A124 EIF2C4 SNP Missense_Mutation 1 36298161 G A 33 100 BRCA TCGA-AO-A124 CSF3R SNP Missense_Mutation 1 36940986 C G 27 47 BRCA TCGA-AO-A124 DAB1 DEL Splice_Site 1 57537166 CCAGCGCAAGGATAAATTCACAGGTATA - 30 44 BRCA TCGA-AO-A124 LEPR SNP Missense_Mutation 1 66036458 G A 36 55 BRCA TCGA-AO-A124 LRRC7 SNP Missense_Mutation 1 70460297 C A 28 51 BRCA TCGA-AO-A124 SLC44A3 SNP Silent 1 95330335 G C 40 26 BRCA TCGA-AO-A124 HSPA12A SNP Missense_Mutation 10 118434446 C T 27 75 BRCA TCGA-AO-A124 LRRC27 SNP Missense_Mutation 10 134151186 A G 12 55 BRCA TCGA-AO-A124 WDFY4 SNP Splice_site 10 50022127 G C 35 67 BRCA TCGA-AO-A124 LRIT2 SNP Missense_Mutation 10 85984799 C T 32 69 BRCA TCGA-AO-A124 ARHGAP42 SNP Missense_Mutation 11 100792303 C G 21 96 BRCA TCGA-AO-A124 RNF26 SNP Silent 11 119206393 C T 30 58 BRCA TCGA-AO-A124 EXT2 SNP Missense_Mutation 11 44228488 C A 19 32 BRCA TCGA-AO-A124 OR5B17 SNP Missense_Mutation 11 58125977 T C 54 70 BRCA TCGA-AO-A124 GCN1L1 SNP Missense_Mutation 12 120565720 C T 24 95 BRCA TCGA-AO-A124 PLEKHA5 SNP Silent 12 19511185 A G 2 28 BRCA TCGA-AO-A124 PRICKLE1 SNP Missense_Mutation 12 42853647 T G 64 63 BRCA TCGA-AO-A124 KRT2 SNP Missense_Mutation 12 53042093 G A 36 57 BRCA TCGA-AO-A124 CD9 SNP Missense_Mutation 12 6309673 T A 58 67 BRCA TCGA-AO-A124 BRCA2 SNP Missense_Mutation 13 32972561 G C 48 64 BRCA TCGA-AO-A124 FAM124A SNP Missense_Mutation 13 51826195 C T 23 97 BRCA TCGA-AO-A124 MYH6 SNP Splice_site 14 23874978 G A 40 94 BRCA TCGA-AO-A124 SYNE3 SNP Missense_Mutation 14 95918641 G A 35 60 BRCA TCGA-AO-A124 LRRK1 SNP Nonsense_Mutation 15 101567954 G T 41 84 BRCA TCGA-AO-A124 ATP10A DEL In_Frame_Del 15 25959256 ACTTGTGGCTGG - 2 51 BRCA TCGA-AO-A124 RYR3 SNP Missense_Mutation 15 34034597 C G 31 40 BRCA TCGA-AO-A124 ADAMTSL3 SNP Nonsense_Mutation 15 84639385 C A 25 62 BRCA TCGA-AO-A124 PKD1 SNP Missense_Mutation 16 2152129 A G 3 10 BRCA TCGA-AO-A124 STAC2 SNP Missense_Mutation 17 37369302 G C 42 53 BRCA TCGA-AO-A124 CCR7 SNP Nonsense_Mutation 17 38711515 G A 46 56 BRCA TCGA-AO-A124 LRRC37A SNP Splice_site 17 44415042 G T 41 54 BRCA TCGA-AO-A124 CACNA1G SNP Missense_Mutation 17 48653132 G T 42 61 BRCA TCGA-AO-A124 APPBP2 SNP Missense_Mutation 17 58538075 G A 42 99 BRCA TCGA-AO-A124 MED13 SNP Missense_Mutation 17 60087928 A T 6 63 BRCA TCGA-AO-A124 HELZ SNP Missense_Mutation 17 65082989 G T 39 99 BRCA TCGA-AO-A124 CDR2L SNP Splice_Site 17 72998158 G A 35 100 BRCA TCGA-AO-A124 TP53 SNP Nonsense_Mutation 17 7578212 G A 37 66 BRCA TCGA-AO-A124 RPTOR SNP Missense_Mutation 17 78811786 A T 6 85 BRCA TCGA-AO-A124 MIB1 SNP Missense_Mutation 18 19438538 C G 17 72 BRCA TCGA-AO-A124 MYOM1 SNP Missense_Mutation 18 3094191 C G 31 86 BRCA TCGA-AO-A124 DCC SNP Missense_Mutation 18 50918216 G A 40 84 BRCA TCGA-AO-A124 EPB41L3 SNP Missense_Mutation 18 5445173 A G 1 91 BRCA TCGA-AO-A124 ZNF66P DEL In_Frame_Del 19 20973561 AAA - 9 51 BRCA TCGA-AO-A124 FCGBP SNP Missense_Mutation 19 40383993 T A 60 49 BRCA TCGA-AO-A124 MAP2K2 SNP Missense_Mutation 19 4117473 C T 23 95 BRCA TCGA-AO-A124 SYNGR4 SNP Silent 19 48879377 A T 9 29 BRCA TCGA-AO-A124 AP2A1 SNP Missense_Mutation 19 50309000 C G 21 76 BRCA TCGA-AO-A124 MYH14 SNP Missense_Mutation 19 50805047 C A 23 56 BRCA TCGA-AO-A124 NLRP8 SNP Missense_Mutation 19 56485096 C G 18 47 BRCA TCGA-AO-A124 MCOLN1 SNP Missense_Mutation 19 7589918 C A 18 54 BRCA TCGA-AO-A124 MUC16 SNP Missense_Mutation 19 9050021 G A 40 40 BRCA TCGA-AO-A124 MUC16 SNP Missense_Mutation 19 9087467 G T 46 50 BRCA TCGA-AO-A124 SLC9A2 SNP Missense_Mutation 2 103321040 C G 17 74 BRCA TCGA-AO-A124 YSK4 SNP Missense_Mutation 2 135744731 T G 60 50 BRCA TCGA-AO-A124 CRYGC SNP Missense_Mutation 2 208993146 C A 29 73 BRCA TCGA-AO-A124 CRYGC SNP Nonsense_Mutation 2 208993166 C A 30 82 BRCA TCGA-AO-A124 APOB SNP Missense_Mutation 2 21235092 G T 33 60 BRCA TCGA-AO-A124 TMEM214 SNP Missense_Mutation 2 27255983 A G 9 50 BRCA TCGA-AO-A124 FAM98A SNP Missense_Mutation 2 33810192 C G 18 94 BRCA TCGA-AO-A124 SPTBN1 SNP Missense_Mutation 2 54859818 C G 28 64 BRCA TCGA-AO-A124 LRRTM1 SNP Missense_Mutation 2 80529665 T A 56 91 BRCA TCGA-AO-A124 FER1L5 DEL In_Frame_Del 2 97329191 CAGACC - 25 51 BRCA TCGA-AO-A124 ESF1 SNP Missense_Mutation 20 13698067 T G 56 64 BRCA TCGA-AO-A124 MYBL2 SNP Missense_Mutation 20 42343796 C A 32 69 BRCA TCGA-AO-A124 LSM14B SNP Silent 20 60705737 G T 45 56 BRCA TCGA-AO-A124 SRMS SNP Missense_Mutation 20 62178623 C T 23 56 BRCA TCGA-AO-A124 BID SNP Missense_Mutation 22 18220856 C T 19 50 BRCA TCGA-AO-A124 TTC28 SNP Missense_Mutation 22 29025722 G T 45 65 BRCA TCGA-AO-A124 AP1B1 SNP Silent 22 29737711 G A 33 78 BRCA TCGA-AO-A124 AKAP14 SNP Missense_Mutation 23 119037310 G C 34 43 BRCA TCGA-AO-A124 ODZ1 SNP Silent 23 123630946 A G 8 56 BRCA TCGA-AO-A124 CXorf58 SNP Missense_Mutation 23 23956748 A T 3 52 BRCA TCGA-AO-A124 PCYT1B SNP Missense_Mutation 23 24608286 T C 55 87 BRCA TCGA-AO-A124 TAF1 SNP Missense_Mutation 23 70604808 A G 12 87 BRCA TCGA-AO-A124 CYLC1 SNP Missense_Mutation 23 83129529 G C 33 57 BRCA TCGA-AO-A124 CPNE4 SNP Missense_Mutation 3 131300432 A T 12 55 BRCA TCGA-AO-A124 RARRES1 INS Frame_Shift_Ins 3 158431599 - T 27 46 BRCA TCGA-AO-A124 IFT80 SNP Missense_Mutation 3 159997110 A C 12 54 BRCA TCGA-AO-A124 ZBBX SNP Missense_Mutation 3 167023671 T A 64 46 BRCA TCGA-AO-A124 TBCCD1 SNP Silent 3 186272045 T G 63 59 BRCA TCGA-AO-A124 DLEC1 SNP Missense_Mutation 3 38080927 C G 28 59 BRCA TCGA-AO-A124 AMT DEL In_Frame_Del 3 49456564 CCCCGCTACCGG - 22 56 BRCA TCGA-AO-A124 CACNA2D3 SNP Missense_Mutation 3 54905585 G T 37 89 BRCA TCGA-AO-A124 ROBO1 SNP Silent 3 78737828 T A 55 58 BRCA TCGA-AO-A124 C4orf36 SNP Missense_Mutation 4 87809333 C T 18 50 BRCA TCGA-AO-A124 DMXL1 SNP Missense_Mutation 5 118573104 T C 49 84 BRCA TCGA-AO-A124 HMGXB3 SNP Missense_Mutation 5 149425158 G C 48 79 BRCA TCGA-AO-A124 LMAN2 SNP Missense_Mutation 5 176778492 G A 48 73 BRCA TCGA-AO-A124 TRIM41 SNP Silent 5 180661772 T C 56 54 BRCA TCGA-AO-A124 MICAL1 SNP Missense_Mutation 6 109766449 C G 28 47 BRCA TCGA-AO-A124 MAN1A1 SNP Missense_Mutation 6 119501033 A G 11 90 BRCA TCGA-AO-A124 SYNE1 SNP Missense_Mutation 6 152546921 C G 19 87 BRCA TCGA-AO-A124 FKBPL SNP Missense_Mutation 6 32097227 G C 39 55 BRCA TCGA-AO-A124 C6orf89 SNP Missense_Mutation 6 36882408 G A 35 75 BRCA TCGA-AO-A124 PRPF4B SNP Missense_Mutation 6 4032461 G C 35 86 BRCA TCGA-AO-A124 FRS3 SNP Missense_Mutation 6 41738737 C T 31 75 BRCA TCGA-AO-A124 SNAP91 SNP Missense_Mutation 6 84324580 C T 29 70 BRCA TCGA-AO-A124 TBX18 SNP Silent 6 85457662 G T 39 49 BRCA TCGA-AO-A124 EPHB4 SNP Missense_Mutation 7 100417260 C T 18 70 BRCA TCGA-AO-A124 TRIM56 SNP Missense_Mutation 7 100730642 G T 37 58 BRCA TCGA-AO-A124 CFTR SNP Missense_Mutation 7 117282532 T C 63 89 BRCA TCGA-AO-A124 FSCN3 SNP Silent 7 127235672 C A 30 55 BRCA TCGA-AO-A124 MEST SNP Splice_Site 7 130140628 A C 7 77 BRCA TCGA-AO-A124 ZC3HAV1 SNP Silent 7 138732379 C A 29 75 BRCA TCGA-AO-A124 MKRN1 SNP Missense_Mutation 7 140154472 A T 3 67 BRCA TCGA-AO-A124 ZNF783 SNP Silent 7 148963924 C T 31 50 BRCA TCGA-AO-A124 GIMAP2 SNP Silent 7 150389497 C T 25 53 BRCA TCGA-AO-A124 HTR5A SNP Missense_Mutation 7 154863184 G T 46 98 BRCA TCGA-AO-A124 GLI3 SNP Silent 7 42088133 C T 27 52 BRCA TCGA-AO-A124 HECW1 SNP Missense_Mutation 7 43601517 C A 20 100 BRCA TCGA-AO-A124 DDX56 SNP Missense_Mutation 7 44606075 T C 56 59 BRCA TCGA-AO-A124 ERVW-1 SNP Missense_Mutation 7 92099631 G C 43 51 BRCA TCGA-AO-A124 DLC1 SNP Missense_Mutation 8 13357276 G T 42 86 BRCA TCGA-AO-A124 PXDNL SNP Silent 8 52287255 G A 39 41 BRCA TCGA-AO-A124 CNTRL SNP Missense_Mutation 9 123937323 C G 25 87 BRCA TCGA-AO-A124 NR6A1 SNP Missense_Mutation 9 127316795 C T 27 85 BRCA TCGA-AO-A124 FCN1 SNP Silent 9 137808243 C A 25 57 BRCA TCGA-AO-A124 FAM166A SNP Missense_Mutation 9 140142119 C T 17 54 BRCA TCGA-AO-A124 SMARCA2 SNP Missense_Mutation 9 2058393 C G 25 100 BRCA TCGA-AO-A124 KIF24 SNP Missense_Mutation 9 34269280 G T 46 93 BRCA TCGA-AO-A124 FANCG SNP Missense_Mutation 9 35078182 G C 33 79 BRCA TCGA-AO-A124 SLC28A3 SNP Silent 9 86902989 G T 45 50 BRCA TCGA-AO-A125 CCT3 SNP Missense_Mutation 1 156305652 C G 32 90 BRCA TCGA-AO-A125 BCAN SNP Missense_Mutation 1 156622582 A G 13 50 BRCA TCGA-AO-A125 FHAD1 SNP Splice_site 1 15694118 G A 35 74 BRCA TCGA-AO-A125 FCRL3 SNP Silent 1 157667171 G T 47 47 BRCA TCGA-AO-A125 ACTN2 SNP Splice_site 1 236894614 G T 35 99 BRCA TCGA-AO-A125 KIF26B SNP Missense_Mutation 1 245861431 C T 22 96 BRCA TCGA-AO-A125 BAI2 SNP Silent 1 32210310 C T 31 69 BRCA TCGA-AO-A125 CCDC168 DEL Frame_Shift_Del 13 103382805 T - 56 48 BRCA TCGA-AO-A125 IREB2 SNP Missense_Mutation 15 78758680 A G 13 58 BRCA TCGA-AO-A125 HYDIN SNP Nonsense_Mutation 16 71008518 G A 39 66 BRCA TCGA-AO-A125 PRPSAP2 SNP Nonsense_Mutation 17 18785979 C T 17 100 BRCA TCGA-AO-A125 MRPL45 SNP Missense_Mutation 17 36453190 G C 35 56 BRCA TCGA-AO-A125 FASN SNP Missense_Mutation 17 80054315 C G 30 95 BRCA TCGA-AO-A125 SLC39A6 SNP Missense_Mutation 18 33706858 G C 39 57 BRCA TCGA-AO-A125 SAMD1 DEL In_Frame_Del 19 14200113 TCT - 50 67 BRCA TCGA-AO-A125 ATCAY SNP Silent 19 3908273 C T 19 52 BRCA TCGA-AO-A125 PRKD2 SNP Missense_Mutation 19 47207835 G A 38 75 BRCA TCGA-AO-A125 IL17RA SNP Silent 22 17577966 G A 39 46 BRCA TCGA-AO-A125 PHKA2 SNP Silent 23 18969226 G T 35 49 BRCA TCGA-AO-A125 CDX4 SNP Missense_Mutation 23 72674300 C T 31 73 BRCA TCGA-AO-A125 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-AO-A125 TCAIM SNP Missense_Mutation 3 44441887 G A 35 47 BRCA TCGA-AO-A125 OTOP1 SNP Missense_Mutation 4 4199797 G A 40 65 BRCA TCGA-AO-A125 PCDHA6 SNP Missense_Mutation 5 140208763 G A 38 56 BRCA TCGA-AO-A125 HK3 SNP Missense_Mutation 5 176308376 G A 39 77 BRCA TCGA-AO-A125 CDH10 DEL Splice_site 5 24535931 C - 18 100 BRCA TCGA-AO-A125 RASGRF2 SNP Silent 5 80390150 G A 45 60 BRCA TCGA-AO-A125 PRDM1 SNP Silent 6 106553787 C T 31 48 BRCA TCGA-AO-A125 SAP25 SNP Missense_Mutation 7 100170189 C T 21 68 BRCA TCGA-AO-A125 MLL3 SNP Nonsense_Mutation 7 151880094 C A 32 99 BRCA TCGA-AO-A125 TEX15 SNP Missense_Mutation 8 30701516 T A 60 70 BRCA TCGA-AO-A125 CSMD1 SNP Silent 8 3855433 T C 51 21 BRCA TCGA-AO-A125 JAK2 DEL Frame_Shift_Del 9 5077523 A - 13 57 BRCA TCGA-AO-A125 ECM2 DEL In_Frame_Del 9 95277299 TCT - 50 59 BRCA TCGA-AO-A126 ENSG00000238261 SNP Splice_Site 1 143398428 G A 44 50 BRCA TCGA-AO-A126 OR13G1 SNP Missense_Mutation 1 247836219 A C 12 72 BRCA TCGA-AO-A126 RERE SNP Missense_Mutation 1 8421526 A G 12 88 BRCA TCGA-AO-A126 OBFC1 SNP Missense_Mutation 10 105657473 G T 41 65 BRCA TCGA-AO-A126 ADD3 SNP Missense_Mutation 10 111892110 A T 4 58 BRCA TCGA-AO-A126 SHANK2 SNP Silent 11 70331577 G A 40 48 BRCA TCGA-AO-A126 CDCA4 SNP Missense_Mutation 14 105477579 C T 31 82 BRCA TCGA-AO-A126 PDP2 SNP Missense_Mutation 16 66918915 C T 31 88 BRCA TCGA-AO-A126 SLC13A5 SNP Silent 17 6606363 G A 40 38 BRCA TCGA-AO-A126 ZNF71 SNP Missense_Mutation 19 57133612 C A 18 50 BRCA TCGA-AO-A126 ICOS SNP Missense_Mutation 2 204820385 G A 45 54 BRCA TCGA-AO-A126 FER1L5 SNP Missense_Mutation 2 97355022 G A 48 93 BRCA TCGA-AO-A126 PPIL2 SNP Missense_Mutation 22 22049730 T C 51 41 BRCA TCGA-AO-A126 PPM1F SNP Splice_site 22 22300420 T C 51 61 BRCA TCGA-AO-A126 PNCK SNP Silent 23 152936838 C T 19 49 BRCA TCGA-AO-A126 MAGEE1 SNP Silent 23 75649280 C T 23 33 BRCA TCGA-AO-A126 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-AO-A126 ALPK1 SNP Missense_Mutation 4 113351611 G A 40 74 BRCA TCGA-AO-A126 HELQ SNP Missense_Mutation 4 84368010 A T 7 92 BRCA TCGA-AO-A126 SPINK5 SNP Splice_site 5 147505286 G T 41 64 BRCA TCGA-AO-A126 IPO11 SNP Splice_Site 5 61781290 G T 44 95 BRCA TCGA-AO-A126 KCNK9 SNP Silent 8 140631062 G A 40 58 BRCA TCGA-AO-A129 NBPF7 SNP Silent 1 120379945 C T 27 48 BRCA TCGA-AO-A129 PRAMEF2 SNP Silent 1 12919596 C T 32 56 BRCA TCGA-AO-A129 FLG SNP Missense_Mutation 1 152275739 C A 30 56 BRCA TCGA-AO-A129 TNN SNP Silent 1 175067625 C T 25 50 BRCA TCGA-AO-A129 CACNA1S SNP Missense_Mutation 1 201079345 C A 26 98 BRCA TCGA-AO-A129 ELF3 SNP Silent 1 201984385 C G 31 36 BRCA TCGA-AO-A129 DEGS1 SNP Missense_Mutation 1 224371065 C A 20 55 BRCA TCGA-AO-A129 SIPA1L2 SNP Silent 1 232581367 G A 39 46 BRCA TCGA-AO-A129 ACTN2 SNP Missense_Mutation 1 236925894 C A 25 100 BRCA TCGA-AO-A129 OR2T11 SNP Missense_Mutation 1 248789657 A G 7 59 BRCA TCGA-AO-A129 NR0B2 SNP Missense_Mutation 1 27238463 C T 19 56 BRCA TCGA-AO-A129 LPHN2 SNP Missense_Mutation 1 82416781 C A 20 79 BRCA TCGA-AO-A129 SYDE2 SNP Missense_Mutation 1 85624636 T C 63 62 BRCA TCGA-AO-A129 HFM1 SNP Missense_Mutation 1 91784682 T A 64 70 BRCA TCGA-AO-A129 CWF19L1 SNP Missense_Mutation 10 102003460 T C 59 66 BRCA TCGA-AO-A129 FRMPD2 SNP Splice_Site 10 49452893 C G 32 75 BRCA TCGA-AO-A129 ZNF365 SNP Missense_Mutation 10 64136169 C A 24 89 BRCA TCGA-AO-A129 HNRNPH3 SNP Missense_Mutation 10 70097706 G C 33 100 BRCA TCGA-AO-A129 KAT6B SNP Missense_Mutation 10 76788498 A T 7 59 BRCA TCGA-AO-A129 ATM DEL Frame_Shift_Del 11 108106472 T - 52 58 BRCA TCGA-AO-A129 ANKK1 SNP Missense_Mutation 11 113269799 G A 44 66 BRCA TCGA-AO-A129 PHLDB1 SNP Silent 11 118516531 C A 29 56 BRCA TCGA-AO-A129 CAPRIN1 DEL In_Frame_Del 11 34107665 CCCCACTCTTTGACT - 26 57 BRCA TCGA-AO-A129 OR52R1 SNP Silent 11 4825512 C T 19 33 BRCA TCGA-AO-A129 FOLH1 SNP Missense_Mutation 11 49175795 A C 16 80 BRCA TCGA-AO-A129 PYGM DEL Frame_Shift_Del 11 64527236 ATTGCGGTCCTTTACG - 8 49 BRCA TCGA-AO-A129 SYT9 SNP Missense_Mutation 11 7334807 A G 8 76 BRCA TCGA-AO-A129 RNF169 SNP Missense_Mutation 11 74546847 G A 40 81 BRCA TCGA-AO-A129 C12orf36 SNP Missense_Mutation 12 13529254 T C 58 62 BRCA TCGA-AO-A129 C13orf35 SNP Missense_Mutation 13 113333794 A G 3 50 BRCA TCGA-AO-A129 OR4K13 SNP Missense_Mutation 14 20502724 T G 60 68 BRCA TCGA-AO-A129 LTBP2 SNP Missense_Mutation 14 74972814 A C 7 88 BRCA TCGA-AO-A129 SMEK1 SNP Missense_Mutation 14 91948389 G A 45 89 BRCA TCGA-AO-A129 OTUD7A SNP Missense_Mutation 15 31776741 C T 19 95 BRCA TCGA-AO-A129 GATM SNP Missense_Mutation 15 45658607 T A 51 86 BRCA TCGA-AO-A129 LOC100289289 SNP Missense_Mutation 15 62547578 G A 34 57 BRCA TCGA-AO-A129 ZP2 SNP Missense_Mutation 16 21209118 C G 30 50 BRCA TCGA-AO-A129 ZNF500 SNP Missense_Mutation 16 4802723 G T 41 66 BRCA TCGA-AO-A129 GPR97 DEL Frame_Shift_Del 16 57714218 GTCAGACCTGAGGGGA - 44 50 BRCA TCGA-AO-A129 MYH13 SNP Silent 17 10243510 A T 11 55 BRCA TCGA-AO-A129 WDR81 SNP Missense_Mutation 17 1630415 T G 56 92 BRCA TCGA-AO-A129 SPECC1 SNP Silent 17 20156897 C T 29 74 BRCA TCGA-AO-A129 HOXB8 SNP Missense_Mutation 17 46690618 C A 28 58 BRCA TCGA-AO-A129 USP6 SNP Missense_Mutation 17 5036239 G T 47 66 BRCA TCGA-AO-A129 TEX14 SNP Silent 17 56688647 C T 32 54 BRCA TCGA-AO-A129 SLC13A5 SNP Missense_Mutation 17 6599001 C T 27 65 BRCA TCGA-AO-A129 TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-AO-A129 EIF4A3 SNP Missense_Mutation 17 78112938 C A 17 80 BRCA TCGA-AO-A129 TMEM38A SNP Splice_site 19 16793232 G T 44 98 BRCA TCGA-AO-A129 BABAM1 SNP Missense_Mutation 19 17379746 G T 34 55 BRCA TCGA-AO-A129 ACTN4 DEL Frame_Shift_Del 19 39205151 A - 5 86 BRCA TCGA-AO-A129 NCCRP1 SNP Missense_Mutation 19 39691392 A G 11 74 BRCA TCGA-AO-A129 SUPT5H SNP Missense_Mutation 19 39957372 G T 46 100 BRCA TCGA-AO-A129 MAP3K10 SNP Missense_Mutation 19 40720993 C G 18 93 BRCA TCGA-AO-A129 STRN4 SNP Silent 19 47242077 C T 30 65 BRCA TCGA-AO-A129 ZNF460 SNP Missense_Mutation 19 57803047 G C 48 60 BRCA TCGA-AO-A129 MYO1F SNP Missense_Mutation 19 8620576 G T 44 66 BRCA TCGA-AO-A129 IL18R1 SNP Silent 2 102988435 T C 52 50 BRCA TCGA-AO-A129 SCN2A SNP Missense_Mutation 2 166201296 T A 56 91 BRCA TCGA-AO-A129 ABCA12 SNP Silent 2 215831626 G A 35 55 BRCA TCGA-AO-A129 TP53I3 SNP Missense_Mutation 2 24303814 C T 30 60 BRCA TCGA-AO-A129 BCL11A SNP Missense_Mutation 2 60689460 C G 32 100 BRCA TCGA-AO-A129 MEIS1 SNP Silent 2 66664937 G A 38 66 BRCA TCGA-AO-A129 REM1 SNP Nonsense_Mutation 20 30070112 C G 29 52 BRCA TCGA-AO-A129 ARHGAP40 SNP Missense_Mutation 20 37267927 G T 44 79 BRCA TCGA-AO-A129 RBPJL SNP Missense_Mutation 20 43936867 G T 39 48 BRCA TCGA-AO-A129 SLC12A5 SNP Missense_Mutation 20 44676722 G C 41 91 BRCA TCGA-AO-A129 RSPH1 SNP Missense_Mutation 21 43906485 G C 45 63 BRCA TCGA-AO-A129 SH3BP1 SNP Missense_Mutation 22 38044419 G T 46 64 BRCA TCGA-AO-A129 MGAT3 SNP Missense_Mutation 22 39884853 C G 22 97 BRCA TCGA-AO-A129 FAM48B1 SNP Missense_Mutation 23 24381065 A C 2 79 BRCA TCGA-AO-A129 DDX3X SNP Missense_Mutation 23 41204455 G A 45 99 BRCA TCGA-AO-A129 DGAT2L6 SNP Missense_Mutation 23 69424916 A G 9 62 BRCA TCGA-AO-A129 RNF13 SNP Missense_Mutation 3 149619889 C T 32 97 BRCA TCGA-AO-A129 LAMB2 SNP Missense_Mutation 3 49162717 G C 39 83 BRCA TCGA-AO-A129 ENAM SNP Missense_Mutation 4 71500244 C A 17 43 BRCA TCGA-AO-A129 IL6ST SNP Missense_Mutation 5 55237028 C G 18 55 BRCA TCGA-AO-A129 IQGAP2 SNP Nonsense_Mutation 5 75993917 C T 25 100 BRCA TCGA-AO-A129 SLC22A3 SNP Silent 6 160858230 G A 40 27 BRCA TCGA-AO-A129 LOC100289195 SNP Missense_Mutation 6 160882378 G T 45 49 BRCA TCGA-AO-A129 DAXX SNP Silent 6 33288193 A G 7 55 BRCA TCGA-AO-A129 TMEM63B SNP Silent 6 44119646 C T 31 60 BRCA TCGA-AO-A129 TRAM2 SNP Missense_Mutation 6 52370475 G C 42 84 BRCA TCGA-AO-A129 ATXN7L1 SNP Missense_Mutation 7 105254792 C G 32 73 BRCA TCGA-AO-A129 PTPRZ1 SNP Missense_Mutation 7 121652195 C T 32 73 BRCA TCGA-AO-A129 FAM115A SNP Missense_Mutation 7 143573445 G C 33 81 BRCA TCGA-AO-A129 IGF2BP3 SNP Silent 7 23352363 A G 8 58 BRCA TCGA-AO-A129 CCDC126 SNP Splice_site 7 23682551 G A 39 54 BRCA TCGA-AO-A129 ABCA13 SNP Missense_Mutation 7 48349591 G T 35 40 BRCA TCGA-AO-A129 VPS13B SNP Missense_Mutation 8 100866232 G C 43 54 BRCA TCGA-AO-A129 PABPC1 SNP Splice_Site 8 101733617 A T 6 86 BRCA TCGA-AO-A129 DPYS SNP Missense_Mutation 8 105441860 T C 62 80 BRCA TCGA-AO-A129 ENPP2 SNP Missense_Mutation 8 120613690 G C 40 35 BRCA TCGA-AO-A129 KCNQ3 SNP Silent 8 133150245 G C 33 55 BRCA TCGA-AO-A129 CSMD1 SNP Silent 8 3000129 T G 58 13 BRCA TCGA-AO-A129 PROSC SNP Silent 8 37635577 C T 27 46 BRCA TCGA-AO-A129 ZFHX4 SNP Silent 8 77761274 G C 43 58 BRCA TCGA-AO-A12A GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-AO-A12A CWF19L2 INS Frame_Shift_Ins 11 107300004 - T 8 45 BRCA TCGA-AO-A12A ERBB3 SNP Nonsense_Mutation 12 56479001 C T 29 49 BRCA TCGA-AO-A12A OTOGL SNP Splice_site 12 80750196 G T 41 70 BRCA TCGA-AO-A12A FLRT2 SNP Silent 14 86089046 G A 38 34 BRCA TCGA-AO-A12A NTN3 SNP Silent 16 2522416 C T 23 50 BRCA TCGA-AO-A12A ALPK2 SNP Missense_Mutation 18 56203486 T A 54 62 BRCA TCGA-AO-A12A MAP1S SNP Missense_Mutation 19 17845130 G A 38 71 BRCA TCGA-AO-A12A ZNF93 SNP Missense_Mutation 19 20026206 G A 44 56 BRCA TCGA-AO-A12A SRRM5 SNP Missense_Mutation 19 44117260 C A 17 39 BRCA TCGA-AO-A12A CATSPERD SNP Missense_Mutation 19 5778547 C T 23 57 BRCA TCGA-AO-A12A FAM47C SNP Missense_Mutation 23 37027942 C T 23 54 BRCA TCGA-AO-A12A KDM6A SNP Missense_Mutation 23 44942776 T C 53 89 BRCA TCGA-AO-A12A PAQR9 SNP Silent 3 142681561 G A 37 49 BRCA TCGA-AO-A12A PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-AO-A12A PCDHGB2 SNP Silent 5 140741223 G T 45 52 BRCA TCGA-AO-A12A GRIA1 SNP Silent 5 153056565 G A 38 46 BRCA TCGA-AO-A12A POLH SNP Silent 6 43571740 G A 33 47 BRCA TCGA-AO-A12B AMY2A SNP Missense_Mutation 1 104162362 A T 7 70 BRCA TCGA-AO-A12B DNM3 SNP Missense_Mutation 1 171958092 T A 50 61 BRCA TCGA-AO-A12B PTPN14 SNP Nonsense_Mutation 1 214543010 G A 39 87 BRCA TCGA-AO-A12B PRKCQ SNP Missense_Mutation 10 6470185 T C 54 69 BRCA TCGA-AO-A12B MTNR1B SNP Silent 11 92715124 C T 27 39 BRCA TCGA-AO-A12B GUCY2C SNP Splice_Site 12 14825805 A C 14 72 BRCA TCGA-AO-A12B LIMA1 SNP Missense_Mutation 12 50616076 G T 47 67 BRCA TCGA-AO-A12B TRHDE SNP Nonsense_Mutation 12 72956810 C T 29 64 BRCA TCGA-AO-A12B OSBPL8 SNP Missense_Mutation 12 76786476 G A 40 81 BRCA TCGA-AO-A12B TRPC4 SNP Silent 13 38357162 A G 15 43 BRCA TCGA-AO-A12B PKD1 SNP Missense_Mutation 16 2144180 G C 34 49 BRCA TCGA-AO-A12B CTCF DEL Frame_Shift_Del 16 67644796 GAGA - 41 94 BRCA TCGA-AO-A12B USP32 SNP Missense_Mutation 17 58260550 C T 27 63 BRCA TCGA-AO-A12B RFPL4A SNP Silent 19 56274382 G T 44 44 BRCA TCGA-AO-A12B ENSG00000229292 SNP Silent 19 56284386 G T 44 45 BRCA TCGA-AO-A12B PAQR9 SNP Missense_Mutation 3 142681430 G A 39 100 BRCA TCGA-AO-A12B CHST2 SNP Silent 3 142840933 C T 19 68 BRCA TCGA-AO-A12B PCDHA12 SNP Silent 5 140256980 C T 19 49 BRCA TCGA-AO-A12B GFPT2 SNP Silent 5 179740867 G A 38 22 BRCA TCGA-AO-A12B NNT SNP Missense_Mutation 5 43616033 T G 64 60 BRCA TCGA-AO-A12B ADAMTS6 SNP Missense_Mutation 5 64748575 G A 39 85 BRCA TCGA-AO-A12B ANGPT2 SNP Missense_Mutation 8 6420368 C G 24 84 BRCA TCGA-AO-A12D PRAMEF17 SNP Missense_Mutation 1 13716922 G A 41 50 BRCA TCGA-AO-A12D OR2B11 SNP Nonsense_Mutation 1 247614573 G A 40 66 BRCA TCGA-AO-A12D GBP5 SNP Missense_Mutation 1 89732775 C G 29 69 BRCA TCGA-AO-A12D SEC31B SNP Missense_Mutation 10 102255183 C G 32 80 BRCA TCGA-AO-A12D SEC31B SNP Missense_Mutation 10 102269149 G A 37 74 BRCA TCGA-AO-A12D KAT6B SNP Missense_Mutation 10 76603067 G A 39 86 BRCA TCGA-AO-A12D UPK2 SNP Missense_Mutation 11 118828354 G C 33 63 BRCA TCGA-AO-A12D PRKRIR SNP Missense_Mutation 11 76062204 C T 29 97 BRCA TCGA-AO-A12D CUX2 SNP Missense_Mutation 12 111785675 C T 23 46 BRCA TCGA-AO-A12D VPS33A SNP Missense_Mutation 12 122716807 C G 30 100 BRCA TCGA-AO-A12D FAM192A SNP Silent 16 57188235 G A 33 53 BRCA TCGA-AO-A12D PIEZO1 SNP Silent 16 88799821 G A 37 50 BRCA TCGA-AO-A12D TP53 DEL Frame_Shift_Del 17 7577558 G - 35 64 BRCA TCGA-AO-A12D GREB1L SNP Silent 18 19019528 C T 21 51 BRCA TCGA-AO-A12D TPO SNP Missense_Mutation 2 1500429 G A 47 82 BRCA TCGA-AO-A12D XRN2 SNP Missense_Mutation 20 21329049 G A 39 83 BRCA TCGA-AO-A12D PLCG1 SNP Missense_Mutation 20 39802138 G A 45 100 BRCA TCGA-AO-A12D ODZ1 SNP Missense_Mutation 23 123518516 C T 17 99 BRCA TCGA-AO-A12D ZNF157 SNP Missense_Mutation 23 47270116 G C 47 58 BRCA TCGA-AO-A12D ZNF41 SNP Missense_Mutation 23 47307056 G A 40 52 BRCA TCGA-AO-A12D GFM1 SNP Missense_Mutation 3 158376754 G A 41 98 BRCA TCGA-AO-A12D MUC4 SNP Missense_Mutation 3 195506364 G C 40 64 BRCA TCGA-AO-A12D EPHA6 SNP Missense_Mutation 3 97185269 C G 30 49 BRCA TCGA-AO-A12D BOD1L1 SNP Silent 4 13605938 G A 45 51 BRCA TCGA-AO-A12D GLRB SNP Silent 4 158065056 C T 32 47 BRCA TCGA-AO-A12D PDGFRA SNP Missense_Mutation 4 55141065 G A 45 79 BRCA TCGA-AO-A12D PCDHA5 SNP Missense_Mutation 5 140203377 C A 21 58 BRCA TCGA-AO-A12D FAM196B SNP Missense_Mutation 5 169310560 G A 36 64 BRCA TCGA-AO-A12D AGXT2 SNP Missense_Mutation 5 35039475 C A 30 97 BRCA TCGA-AO-A12D BEND3 SNP Missense_Mutation 6 107390228 C T 29 96 BRCA TCGA-AO-A12D HIVEP2 SNP Silent 6 143091478 G A 40 40 BRCA TCGA-AO-A12D NYAP1 SNP Missense_Mutation 7 100088184 C T 30 79 BRCA TCGA-AO-A12D EXOC4 SNP Missense_Mutation 7 132937919 C T 31 82 BRCA TCGA-AO-A12D CYTH3 SNP Silent 7 6210581 G A 45 76 BRCA TCGA-AO-A12D TRIM55 SNP Silent 8 67040682 C A 29 71 BRCA TCGA-AO-A12D SLCO5A1 SNP Missense_Mutation 8 70591657 G T 45 78 BRCA TCGA-AO-A12D TGFBR1 SNP Missense_Mutation 9 101900249 A T 9 90 BRCA TCGA-AO-A12D DCAF12 SNP Missense_Mutation 9 34125232 G A 35 67 BRCA TCGA-AO-A12E WDR78 SNP Missense_Mutation 1 67306238 C T 27 61 BRCA TCGA-AO-A12E IDI1 SNP Missense_Mutation 10 1088646 C T 30 94 BRCA TCGA-AO-A12E IKZF5 SNP Silent 10 124753899 G A 41 64 BRCA TCGA-AO-A12E ZNF438 DEL Frame_Shift_Del 10 31139222 C - 25 96 BRCA TCGA-AO-A12E HERC4 SNP Silent 10 69692462 C T 23 51 BRCA TCGA-AO-A12E COL13A1 SNP Missense_Mutation 10 71665573 C T 23 60 BRCA TCGA-AO-A12E MYOF SNP Silent 10 95191210 C T 19 30 BRCA TCGA-AO-A12E TBCEL SNP Missense_Mutation 11 120925823 G A 48 78 BRCA TCGA-AO-A12E RILPL1 SNP Silent 12 124008109 C T 28 53 BRCA TCGA-AO-A12E ITGA7 SNP Missense_Mutation 12 56092319 C T 27 95 BRCA TCGA-AO-A12E CHD4 SNP Missense_Mutation 12 6701926 G T 44 100 BRCA TCGA-AO-A12E XPO4 DEL Frame_Shift_Del 13 21357913 TT - 56 90 BRCA TCGA-AO-A12E ITPK1 SNP Missense_Mutation 14 93412768 C A 23 78 BRCA TCGA-AO-A12E PSMD3 SNP Missense_Mutation 17 38145029 G T 38 65 BRCA TCGA-AO-A12E FFAR3 SNP Missense_Mutation 19 35850292 G C 43 47 BRCA TCGA-AO-A12E SPAG16 SNP Missense_Mutation 2 214181974 C T 20 60 BRCA TCGA-AO-A12E BPIFB3 SNP Splice_site 20 31659972 C T 19 43 BRCA TCGA-AO-A12E ZBED4 SNP Missense_Mutation 22 50277363 A T 12 55 BRCA TCGA-AO-A12E ZNF620 SNP Splice_Site 3 40554007 G T 44 57 BRCA TCGA-AO-A12E KIAA1109 SNP Missense_Mutation 4 123268873 C G 26 65 BRCA TCGA-AO-A12E FAT2 SNP Missense_Mutation 5 150946277 G C 42 100 BRCA TCGA-AO-A12E GALNT10 SNP Missense_Mutation 5 153795448 G A 37 100 BRCA TCGA-AO-A12E C5orf44 SNP Missense_Mutation 5 64957916 A G 4 88 BRCA TCGA-AO-A12E BDP1 SNP Silent 5 70818170 C T 30 53 BRCA TCGA-AO-A12E SYNE1 SNP Missense_Mutation 6 152551687 A T 7 89 BRCA TCGA-AO-A12E MYO1G SNP Missense_Mutation 7 45006283 C T 31 67 BRCA TCGA-AO-A12E RGS22 SNP Silent 8 101020624 C T 23 54 BRCA TCGA-AO-A12E CPA6 SNP Silent 8 68346441 T C 51 18 BRCA TCGA-AO-A12E INTS8 SNP Missense_Mutation 8 95869095 A G 12 67 BRCA TCGA-AO-A12E GRIN3A SNP Missense_Mutation 9 104499565 G C 45 69 BRCA TCGA-AO-A12E NTRK2 SNP Missense_Mutation 9 87570325 G A 40 99 BRCA TCGA-AO-A12E HIATL1 SNP Missense_Mutation 9 97203308 T G 58 85 BRCA TCGA-AO-A12F FLG SNP Missense_Mutation 1 152277404 G A 38 53 BRCA TCGA-AO-A12F SESN2 SNP Nonsense_Mutation 1 28598251 C T 27 69 BRCA TCGA-AO-A12F KIAA1377 SNP Missense_Mutation 11 101818866 A C 1 53 BRCA TCGA-AO-A12F OPCML SNP Silent 11 132290114 G T 33 81 BRCA TCGA-AO-A12F PGAP2 SNP Missense_Mutation 11 3845190 C T 31 51 BRCA TCGA-AO-A12F TRIM6 SNP Missense_Mutation 11 5632399 C T 23 65 BRCA TCGA-AO-A12F MORN3 SNP Missense_Mutation 12 122107317 C T 23 77 BRCA TCGA-AO-A12F POSTN SNP Missense_Mutation 13 38172818 C T 17 51 BRCA TCGA-AO-A12F UNC13C SNP Missense_Mutation 15 54435218 G C 34 71 BRCA TCGA-AO-A12F MYH1 SNP Missense_Mutation 17 10399397 C T 27 100 BRCA TCGA-AO-A12F KRT14 SNP Missense_Mutation 17 39742881 T A 49 69 BRCA TCGA-AO-A12F KPNA2 SNP Missense_Mutation 17 66033483 C T 27 69 BRCA TCGA-AO-A12F TP53 SNP Splice_site 17 7579312 C G 23 57 BRCA TCGA-AO-A12F WRAP53 SNP Missense_Mutation 17 7606441 G C 40 57 BRCA TCGA-AO-A12F PLIN4 SNP Missense_Mutation 19 4513446 G A 34 43 BRCA TCGA-AO-A12F CLASRP SNP Missense_Mutation 19 45571725 G C 38 22 BRCA TCGA-AO-A12F ZNF320 SNP Missense_Mutation 19 53385122 C G 25 33 BRCA TCGA-AO-A12F MYO7B SNP Silent 2 128386034 G A 34 53 BRCA TCGA-AO-A12F ATAD2B SNP Missense_Mutation 2 24080330 T C 50 93 BRCA TCGA-AO-A12F BTBD3 SNP Missense_Mutation 20 11900400 C T 27 100 BRCA TCGA-AO-A12F SLC37A1 SNP Silent 21 43987159 C A 23 26 BRCA TCGA-AO-A12F PACSIN2 SNP Missense_Mutation 22 43275089 C G 32 58 BRCA TCGA-AO-A12F FAM47B SNP Missense_Mutation 23 34960976 C T 26 55 BRCA TCGA-AO-A12F CCDC22 SNP Silent 23 49103224 G A 33 48 BRCA TCGA-AO-A12F TAF1 SNP Missense_Mutation 23 70608656 A G 16 86 BRCA TCGA-AO-A12F LOC644950 DEL Frame_Shift_Del 3 109128578 TAGT - 49 74 BRCA TCGA-AO-A12F ZXDC SNP Missense_Mutation 3 126180635 G T 43 61 BRCA TCGA-AO-A12F MKRN2 SNP Missense_Mutation 3 12623389 G A 37 98 BRCA TCGA-AO-A12F DUSP1 SNP Silent 5 172195858 G A 39 17 BRCA TCGA-AO-A12F UNC93A SNP Missense_Mutation 6 167728785 G A 40 64 BRCA TCGA-AO-A12F NHLRC1 SNP Missense_Mutation 6 18121861 G A 44 81 BRCA TCGA-AO-A12F TG SNP Missense_Mutation 8 133899602 G A 48 96 BRCA TCGA-AO-A12G MTOR SNP Nonsense_Mutation 1 11317205 C A 30 97 BRCA TCGA-AO-A12G CENPF SNP Missense_Mutation 1 214818057 T C 59 47 BRCA TCGA-AO-A12G ACOT11 SNP Missense_Mutation 1 55059671 A G 5 68 BRCA TCGA-AO-A12G COL24A1 SNP Missense_Mutation 1 86430711 G A 47 69 BRCA TCGA-AO-A12G MCMBP DEL Frame_Shift_Del 10 121591004 CA - 29 50 BRCA TCGA-AO-A12G PCDH15 INS In_Frame_Ins 10 55600150 - GGTGTA 63 78 BRCA TCGA-AO-A12G PTEN DEL Frame_Shift_Del 10 89653842 G - 35 93 BRCA TCGA-AO-A12G ATHL1 SNP Missense_Mutation 11 293153 G T 48 44 BRCA TCGA-AO-A12G CCDC168 SNP Silent 13 103386196 C T 25 51 BRCA TCGA-AO-A12G CYP1A2 SNP Missense_Mutation 15 75047325 G A 40 62 BRCA TCGA-AO-A12G KIAA0430 SNP Silent 16 15718667 C T 26 66 BRCA TCGA-AO-A12G DNAH3 SNP Missense_Mutation 16 20996971 C T 32 84 BRCA TCGA-AO-A12G CCDC144A SNP Missense_Mutation 17 16638032 A T 12 68 BRCA TCGA-AO-A12G KIF2B SNP Missense_Mutation 17 51900732 C T 19 64 BRCA TCGA-AO-A12G ABCA5 SNP Missense_Mutation 17 67246622 C T 19 69 BRCA TCGA-AO-A12G TP53 DEL In_Frame_Del 17 7578505 GGGCAGGTCTTG - 35 83 BRCA TCGA-AO-A12G DSG1 SNP Missense_Mutation 18 28926019 G C 41 70 BRCA TCGA-AO-A12G ZNF329 SNP Missense_Mutation 19 58639594 G A 43 82 BRCA TCGA-AO-A12G ERBB4 SNP Silent 2 212289007 C T 29 52 BRCA TCGA-AO-A12G DOCK10 SNP Missense_Mutation 2 225651833 T C 57 91 BRCA TCGA-AO-A12G RIMS4 SNP Missense_Mutation 20 43384877 G T 41 61 BRCA TCGA-AO-A12G BMP15 SNP Missense_Mutation 23 50659109 G C 47 47 BRCA TCGA-AO-A12G PCDHA11 SNP Missense_Mutation 5 140250745 C T 27 49 BRCA TCGA-AO-A12G ZNF131 SNP Missense_Mutation 5 43161509 T C 52 69 BRCA TCGA-AO-A12G PLG SNP Missense_Mutation 6 161162411 G A 39 55 BRCA TCGA-AO-A12G PLXNA4 SNP Missense_Mutation 7 132192324 C T 22 100 BRCA TCGA-AO-A12G WDR60 SNP Missense_Mutation 7 158716295 T C 52 61 BRCA TCGA-AO-A12G GLI3 SNP Missense_Mutation 7 42084998 G A 33 98 BRCA TCGA-AO-A12G GLI3 SNP Nonsense_Mutation 7 42085091 G A 45 98 BRCA TCGA-AO-A12G EGFR SNP Missense_Mutation 7 55221773 A G 6 71 BRCA TCGA-AO-A12G ZNF705G SNP Missense_Mutation 8 7217220 C A 24 48 BRCA TCGA-AO-A12G NECAB1 SNP Silent 8 91937790 G A 48 58 BRCA TCGA-AO-A12G OR1L4 SNP Missense_Mutation 9 125486770 T C 58 59 BRCA TCGA-AO-A12G MTAP SNP Missense_Mutation 9 21818104 G A 33 94 BRCA TCGA-AO-A12G KIAA1045 SNP Missense_Mutation 9 34978067 C T 31 85 BRCA TCGA-AO-A12G KIAA1432 SNP Missense_Mutation 9 5773058 G A 41 85 BRCA TCGA-AO-A12G KIAA1432 SNP Missense_Mutation 9 5774097 G C 33 84 BRCA TCGA-AO-A12H CACNA1E SNP Missense_Mutation 1 181701998 G A 40 70 BRCA TCGA-AO-A12H SWT1 SNP Missense_Mutation 1 185153956 G A 40 61 BRCA TCGA-AO-A12H WDR26 SNP Missense_Mutation 1 224607232 C A 30 100 BRCA TCGA-AO-A12H CAPRIN1 SNP Missense_Mutation 11 34113522 C G 21 98 BRCA TCGA-AO-A12H KDM4D SNP Nonsense_Mutation 11 94730906 A T 1 64 BRCA TCGA-AO-A12H ERC1 SNP Missense_Mutation 12 1289751 A T 11 72 BRCA TCGA-AO-A12H DIP2B SNP Missense_Mutation 12 51133229 A C 14 91 BRCA TCGA-AO-A12H DPPA3 SNP Missense_Mutation 12 7867799 G A 37 65 BRCA TCGA-AO-A12H AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-AO-A12H RYR3 SNP Missense_Mutation 15 34078003 A G 8 79 BRCA TCGA-AO-A12H CSPG4 SNP Silent 15 75982041 C T 27 25 BRCA TCGA-AO-A12H SALL1 SNP Silent 16 51175176 G A 41 51 BRCA TCGA-AO-A12H PHLPP2 SNP Missense_Mutation 16 71701217 G A 33 72 BRCA TCGA-AO-A12H NF1 SNP Missense_Mutation 17 29562668 C T 31 83 BRCA TCGA-AO-A12H SLFN5 SNP Silent 17 33592829 G A 39 42 BRCA TCGA-AO-A12H MINK1 SNP Missense_Mutation 17 4788835 T A 52 89 BRCA TCGA-AO-A12H WBP2 SNP Missense_Mutation 17 73843629 C T 27 46 BRCA TCGA-AO-A12H RBM12 DEL In_Frame_Del 20 34240797 AGGGGCACTTCCAAGACCAGG - 7 51 BRCA TCGA-AO-A12H SRRD SNP Missense_Mutation 22 26884108 G A 48 52 BRCA TCGA-AO-A12H DCAF12L2 SNP Silent 23 125299410 G A 39 23 BRCA TCGA-AO-A12H USP9X INS Frame_Shift_Ins 23 41084197 - A 29 57 BRCA TCGA-AO-A12H C3orf18 SNP Missense_Mutation 3 50598482 G A 40 78 BRCA TCGA-AO-A12H ADGB SNP Missense_Mutation 6 147073842 G A 34 86 BRCA TCGA-AO-A12H DNAH11 SNP Silent 7 21639512 C T 19 52 BRCA TCGA-AO-A1KO NFRKB SNP Silent 11 129751713 T A 55 40 BRCA TCGA-AO-A1KO OSBPL5 SNP Missense_Mutation 11 3115043 C A 28 56 BRCA TCGA-AO-A1KO PPFIA1 SNP Missense_Mutation 11 70218382 G A 42 100 BRCA TCGA-AO-A1KO ADCY6 SNP Silent 12 49167398 C T 21 75 BRCA TCGA-AO-A1KO USPL1 SNP Silent 13 31231753 A G 6 37 BRCA TCGA-AO-A1KO ENTPD5 SNP Missense_Mutation 14 74442670 A G 2 89 BRCA TCGA-AO-A1KO ZSCAN2 SNP Silent 15 85164374 C T 25 60 BRCA TCGA-AO-A1KO ZNF337 DEL Frame_Shift_Del 20 25666719 GG - 47 52 BRCA TCGA-AO-A1KO ASPHD2 INS Frame_Shift_Ins 22 26829760 - T 28 78 BRCA TCGA-AO-A1KO EWSR1 SNP Missense_Mutation 22 29694768 G A 41 78 BRCA TCGA-AO-A1KO WWC3 SNP Missense_Mutation 23 10046872 A G 10 86 BRCA TCGA-AO-A1KO TLR7 SNP Nonsense_Mutation 23 12905869 C T 21 55 BRCA TCGA-AO-A1KO HCFC1 INS Frame_Shift_Ins 23 153236144 - A 23 90 BRCA TCGA-AO-A1KO WDR52 SNP Nonsense_Mutation 3 113010507 G T 37 44 BRCA TCGA-AO-A1KO NUP210 SNP Silent 3 13418986 G A 48 51 BRCA TCGA-AO-A1KO RSRC1 SNP Missense_Mutation 3 158262060 C T 26 86 BRCA TCGA-AO-A1KO LRIT3 SNP Missense_Mutation 4 110772968 C T 18 77 BRCA TCGA-AO-A1KO ZNF354C SNP Silent 5 178506093 A G 4 43 BRCA TCGA-AO-A1KO SYNE1 SNP Missense_Mutation 6 152454589 C A 32 61 BRCA TCGA-AO-A1KO SMOC2 SNP Missense_Mutation 6 168910728 A T 12 85 BRCA TCGA-AO-A1KO TNS3 SNP Silent 7 47408710 G C 35 69 BRCA TCGA-AO-A1KO OSR2 DEL Frame_Shift_Del 8 99963879 TG - 55 92 BRCA TCGA-AO-A1KO DENND4C SNP Silent 9 19342689 C T 17 54 BRCA TCGA-AO-A1KP KIF1B SNP Missense_Mutation 1 10386254 A G 6 90 BRCA TCGA-AO-A1KP RBBP5 SNP Missense_Mutation 1 205073004 G A 40 100 BRCA TCGA-AO-A1KP DYRK3 SNP Silent 1 206810308 A G 3 54 BRCA TCGA-AO-A1KP SYNPO2L SNP Missense_Mutation 10 75406951 A G 1 62 BRCA TCGA-AO-A1KP UHRF1BP1L SNP Missense_Mutation 12 100482869 G A 33 72 BRCA TCGA-AO-A1KP FGF6 SNP Silent 12 4554416 G A 38 55 BRCA TCGA-AO-A1KP CLSTN3 SNP Silent 12 7293852 G A 36 52 BRCA TCGA-AO-A1KP RTL1 SNP Missense_Mutation 14 101349027 T G 57 61 BRCA TCGA-AO-A1KP SLC9A5 SNP Splice_Site 16 67289834 G A 40 100 BRCA TCGA-AO-A1KP CLEC18A SNP Missense_Mutation 16 69996928 G A 37 61 BRCA TCGA-AO-A1KP DNAH17 SNP Missense_Mutation 17 76501415 T G 54 87 BRCA TCGA-AO-A1KP LAMA1 SNP Silent 18 6959369 C T 27 31 BRCA TCGA-AO-A1KP AFF3 SNP Missense_Mutation 2 100170901 G A 39 75 BRCA TCGA-AO-A1KP POTEF SNP Missense_Mutation 2 130832835 C T 27 65 BRCA TCGA-AO-A1KP KRTAP23-1 SNP Missense_Mutation 21 31720857 C T 26 49 BRCA TCGA-AO-A1KP CACNA1F SNP Splice_site 23 49082871 A T 7 53 BRCA TCGA-AO-A1KP MUC4 SNP Missense_Mutation 3 195508385 C A 24 50 BRCA TCGA-AO-A1KP OTUD4 SNP Silent 4 146059245 C T 21 62 BRCA TCGA-AO-A1KP ASB5 SNP Missense_Mutation 4 177190238 G C 37 78 BRCA TCGA-AO-A1KP FRYL SNP Missense_Mutation 4 48542474 A C 3 94 BRCA TCGA-AO-A1KP PCDHA4 SNP Silent 5 140188293 C T 19 65 BRCA TCGA-AO-A1KP CMYA5 SNP Missense_Mutation 5 79033437 G T 42 96 BRCA TCGA-AO-A1KP DPY19L4 SNP Splice_Site 8 95796032 T A 57 82 BRCA TCGA-AO-A1KR VAV3 SNP Missense_Mutation 1 108292204 T G 49 49 BRCA TCGA-AO-A1KR GNAI3 SNP Missense_Mutation 1 110121878 T C 51 92 BRCA TCGA-AO-A1KR SPTA1 SNP Splice_Site 1 158608032 C G 24 94 BRCA TCGA-AO-A1KR OR6K6 SNP Missense_Mutation 1 158725496 G C 43 63 BRCA TCGA-AO-A1KR ASTN1 SNP Missense_Mutation 1 176926869 C A 25 97 BRCA TCGA-AO-A1KR SERTAD4 SNP Missense_Mutation 1 210415039 T C 52 80 BRCA TCGA-AO-A1KR TLR5 SNP Silent 1 223286092 C A 25 77 BRCA TCGA-AO-A1KR MTR SNP Silent 1 237015844 A C 13 60 BRCA TCGA-AO-A1KR AIM1L SNP Missense_Mutation 1 26658074 T C 58 66 BRCA TCGA-AO-A1KR PDE4B SNP Missense_Mutation 1 66833528 G A 45 100 BRCA TCGA-AO-A1KR LRRC40 SNP Missense_Mutation 1 70621394 G C 45 73 BRCA TCGA-AO-A1KR CELF2 SNP Missense_Mutation 10 11299805 A C 12 79 BRCA TCGA-AO-A1KR SORBS1 SNP Silent 10 97096374 C G 21 59 BRCA TCGA-AO-A1KR ANKK1 DEL In_Frame_Del 11 113269704 AGCGGGCCCTTC - 3 60 BRCA TCGA-AO-A1KR SSRP1 SNP Missense_Mutation 11 57099707 G A 45 97 BRCA TCGA-AO-A1KR CERS5 SNP Silent 12 50524370 C G 22 48 BRCA TCGA-AO-A1KR APOBEC1 SNP Silent 12 7802275 T C 61 51 BRCA TCGA-AO-A1KR INTS6 SNP Missense_Mutation 13 51948544 A C 6 90 BRCA TCGA-AO-A1KR EIF2AK4 SNP Missense_Mutation 15 40265856 T C 62 66 BRCA TCGA-AO-A1KR MPG SNP Missense_Mutation 16 129524 G C 34 49 BRCA TCGA-AO-A1KR SCNN1B SNP Nonsense_Mutation 16 23360076 G A 44 86 BRCA TCGA-AO-A1KR PRSS27 SNP Silent 16 2763623 G A 48 58 BRCA TCGA-AO-A1KR WDR90 SNP Missense_Mutation 16 705776 C T 22 83 BRCA TCGA-AO-A1KR KIAA1609 SNP Missense_Mutation 16 84514235 G A 40 58 BRCA TCGA-AO-A1KR KRT9 SNP Silent 17 39724452 C T 32 48 BRCA TCGA-AO-A1KR BRCA1 DEL In_Frame_Del 17 41245615 AAC - 9 50 BRCA TCGA-AO-A1KR CACNG5 SNP Silent 17 64876780 G A 47 53 BRCA TCGA-AO-A1KR ITGB4 SNP Silent 17 73723282 C A 28 74 BRCA TCGA-AO-A1KR SENP3 SNP Splice_Site 17 7468905 G C 44 91 BRCA TCGA-AO-A1KR DNAH17 SNP Missense_Mutation 17 76482127 T A 57 90 BRCA TCGA-AO-A1KR SS18 SNP Silent 18 23612480 A G 10 48 BRCA TCGA-AO-A1KR DSG4 SNP Missense_Mutation 18 28991149 T C 55 49 BRCA TCGA-AO-A1KR ZNF229 SNP Silent 19 44934254 A G 7 51 BRCA TCGA-AO-A1KR HRC SNP Missense_Mutation 19 49656737 G C 45 64 BRCA TCGA-AO-A1KR ZNF175 SNP Silent 19 52090259 C T 19 59 BRCA TCGA-AO-A1KR NLRP12 SNP Missense_Mutation 19 54299149 C T 23 68 BRCA TCGA-AO-A1KR EPS8L1 SNP Missense_Mutation 19 55597838 C G 23 66 BRCA TCGA-AO-A1KR SNTG2 SNP Splice_site 2 1079205 C T 19 62 BRCA TCGA-AO-A1KR CYBRD1 SNP Missense_Mutation 2 172411303 C T 28 51 BRCA TCGA-AO-A1KR ASNSD1 SNP Missense_Mutation 2 190530910 G C 33 69 BRCA TCGA-AO-A1KR METTL21A SNP Missense_Mutation 2 208477909 C T 25 97 BRCA TCGA-AO-A1KR PLEKHH2 SNP Splice_Site 2 43924309 G C 33 89 BRCA TCGA-AO-A1KR RAB1A SNP Missense_Mutation 2 65315695 C A 21 87 BRCA TCGA-AO-A1KR CTNNA2 SNP Missense_Mutation 2 80773146 G C 40 100 BRCA TCGA-AO-A1KR DNMT3L SNP Missense_Mutation 21 45670749 C A 19 58 BRCA TCGA-AO-A1KR POTEH SNP Silent 22 16277852 C T 23 49 BRCA TCGA-AO-A1KR SRRD SNP Silent 22 26884128 A C 5 36 BRCA TCGA-AO-A1KR PORCN SNP Silent 23 48372917 C T 24 62 BRCA TCGA-AO-A1KR ASTE1 SNP Missense_Mutation 3 130743882 G T 48 52 BRCA TCGA-AO-A1KR PIK3CA SNP Missense_Mutation 3 178951957 G A 45 100 BRCA TCGA-AO-A1KR PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-AO-A1KR RASL11B SNP Silent 4 53731600 C T 28 73 BRCA TCGA-AO-A1KR HERC3 SNP Missense_Mutation 4 89577057 G A 47 97 BRCA TCGA-AO-A1KR PCDHB8 SNP Missense_Mutation 5 140558924 A T 5 62 BRCA TCGA-AO-A1KR FBXL7 SNP Silent 5 15500794 G C 37 61 BRCA TCGA-AO-A1KR ZFR SNP Missense_Mutation 5 32420120 C A 20 98 BRCA TCGA-AO-A1KR DMGDH SNP Missense_Mutation 5 78338302 A T 1 90 BRCA TCGA-AO-A1KR TNFAIP3 SNP Missense_Mutation 6 138197148 G C 36 99 BRCA TCGA-AO-A1KR STK31 SNP Missense_Mutation 7 23827704 C T 23 91 BRCA TCGA-AO-A1KR RIMS2 SNP Missense_Mutation 8 104897774 G A 34 53 BRCA TCGA-AO-A1KR FAM49B SNP Missense_Mutation 8 130891704 C A 22 97 BRCA TCGA-AO-A1KR KIAA1429 SNP Missense_Mutation 8 95504889 A T 16 89 BRCA TCGA-AO-A1KR C9orf163 SNP Nonsense_Mutation 9 139379382 G A 47 48 BRCA TCGA-AO-A1KS TDRKH SNP Silent 1 151751327 G A 48 53 BRCA TCGA-AO-A1KS TDRD10 SNP Missense_Mutation 1 154493890 G A 40 47 BRCA TCGA-AO-A1KS TIPRL SNP Missense_Mutation 1 168165856 G A 45 73 BRCA TCGA-AO-A1KS PLA2G4A SNP Missense_Mutation 1 186934718 C T 23 96 BRCA TCGA-AO-A1KS OR14K1 SNP Missense_Mutation 1 247902751 G A 38 42 BRCA TCGA-AO-A1KS SYCE1 SNP Missense_Mutation 10 135373612 A C 6 59 BRCA TCGA-AO-A1KS SUV420H1 SNP Missense_Mutation 11 67941347 T A 55 91 BRCA TCGA-AO-A1KS IGHMBP2 SNP Missense_Mutation 11 68678993 C T 29 56 BRCA TCGA-AO-A1KS ANAPC7 SNP Missense_Mutation 12 110834204 G A 33 99 BRCA TCGA-AO-A1KS KNTC1 DEL Splice_site 12 123073362 AAGT - 1 75 BRCA TCGA-AO-A1KS LRRIQ1 SNP Missense_Mutation 12 85515540 C T 29 60 BRCA TCGA-AO-A1KS CD69 SNP Silent 12 9907739 C T 29 40 BRCA TCGA-AO-A1KS B3GALTL SNP Missense_Mutation 13 31903672 C T 32 100 BRCA TCGA-AO-A1KS ARHGAP11A SNP Silent 15 32908481 G A 45 48 BRCA TCGA-AO-A1KS ISLR2 SNP Missense_Mutation 15 74425574 G A 40 82 BRCA TCGA-AO-A1KS PTPN9 SNP Silent 15 75815503 T C 57 45 BRCA TCGA-AO-A1KS ITGAD SNP Missense_Mutation 16 31424208 C T 27 73 BRCA TCGA-AO-A1KS CDH1 SNP Nonsense_Mutation 16 68772254 G T 37 57 BRCA TCGA-AO-A1KS ANKRD11 SNP Missense_Mutation 16 89350800 G A 45 64 BRCA TCGA-AO-A1KS MYOCD SNP Nonsense_Mutation 17 12655755 C T 31 63 BRCA TCGA-AO-A1KS RUNDC3A SNP Missense_Mutation 17 42390802 G A 39 91 BRCA TCGA-AO-A1KS UBE2O SNP Silent 17 74401326 G A 45 60 BRCA TCGA-AO-A1KS PLEKHG2 SNP Missense_Mutation 19 39905706 G C 43 68 BRCA TCGA-AO-A1KS CLK1 SNP Missense_Mutation 2 201726041 A C 10 67 BRCA TCGA-AO-A1KS GBX2 SNP Missense_Mutation 2 237074835 C T 31 96 BRCA TCGA-AO-A1KS CYYR1 SNP Silent 21 27840937 G A 40 43 BRCA TCGA-AO-A1KS MX2 SNP Silent 21 42770841 A G 15 46 BRCA TCGA-AO-A1KS WDR44 SNP Silent 23 117577583 C G 24 41 BRCA TCGA-AO-A1KS RBBP7 SNP Missense_Mutation 23 16871848 C G 31 96 BRCA TCGA-AO-A1KS TNMD SNP Missense_Mutation 23 99849000 G A 45 79 BRCA TCGA-AO-A1KS COL6A6 SNP Missense_Mutation 3 130290018 G A 37 98 BRCA TCGA-AO-A1KS TFDP2 SNP Missense_Mutation 3 141671811 A G 11 66 BRCA TCGA-AO-A1KS FGB SNP Missense_Mutation 4 155490686 G A 45 100 BRCA TCGA-AO-A1KS CSN2 SNP Silent 4 70823234 G A 33 53 BRCA TCGA-AO-A1KS SEMA6A SNP Silent 5 115782666 G A 40 50 BRCA TCGA-AO-A1KS MTRR SNP Missense_Mutation 5 7878145 A C 3 57 BRCA TCGA-AO-A1KS SEC63 SNP Missense_Mutation 6 108218930 C G 32 96 BRCA TCGA-AO-A1KS LPA SNP Silent 6 161056225 G A 40 33 BRCA TCGA-AO-A1KS PCLO SNP Nonsense_Mutation 7 82784867 G A 45 66 BRCA TCGA-AO-A1KS WHSC1L1 SNP Missense_Mutation 8 38146045 C T 23 88 BRCA TCGA-AO-A1KS CTNNAL1 SNP Missense_Mutation 9 111741679 C T 19 54 BRCA TCGA-AO-A1KT MCM10 SNP Missense_Mutation 10 13222513 T A 50 93 BRCA TCGA-AO-A1KT ATM DEL Splice_Site 11 108160511 TCACTATATCAACCAAAGGTAAATAACA - 62 61 BRCA TCGA-AO-A1KT IL18 SNP Missense_Mutation 11 112020809 T A 50 71 BRCA TCGA-AO-A1KT IL18BP SNP Silent 11 71712520 G A 46 54 BRCA TCGA-AO-A1KT NDUFA9 SNP Missense_Mutation 12 4796146 G A 33 77 BRCA TCGA-AO-A1KT MLL2 SNP Silent 12 49445333 C T 23 16 BRCA TCGA-AO-A1KT MYH6 SNP Missense_Mutation 14 23855313 C A 18 51 BRCA TCGA-AO-A1KT IL4R SNP Missense_Mutation 16 27374816 G C 34 51 BRCA TCGA-AO-A1KT XPO6 SNP Silent 16 28177893 A C 7 55 BRCA TCGA-AO-A1KT ADCY9 SNP Missense_Mutation 16 4042196 T G 51 69 BRCA TCGA-AO-A1KT FZD2 SNP Missense_Mutation 17 42636438 G A 38 99 BRCA TCGA-AO-A1KT USH1G SNP Silent 17 72916430 G A 38 73 BRCA TCGA-AO-A1KT MBD3 SNP Silent 19 1585126 C T 23 41 BRCA TCGA-AO-A1KT QPCTL SNP Missense_Mutation 19 46198833 A C 6 58 BRCA TCGA-AO-A1KT NLRP2 SNP Nonsense_Mutation 19 55489137 C T 19 31 BRCA TCGA-AO-A1KT PIKFYVE SNP Missense_Mutation 2 209136284 C G 28 64 BRCA TCGA-AO-A1KT TTC7A SNP Missense_Mutation 2 47249043 G A 39 69 BRCA TCGA-AO-A1KT SLC4A5 SNP Silent 2 74475491 G A 37 48 BRCA TCGA-AO-A1KT KANSL3 SNP Silent 2 97276810 G C 42 45 BRCA TCGA-AO-A1KT GNAS INS Frame_Shift_Ins 20 57430146 - C 38 49 BRCA TCGA-AO-A1KT SCRT2 SNP Missense_Mutation 20 656217 A T 12 58 BRCA TCGA-AO-A1KT BRWD1 SNP Silent 21 40571242 T C 57 42 BRCA TCGA-AO-A1KT PIWIL3 SNP Missense_Mutation 22 25124287 A T 16 54 BRCA TCGA-AO-A1KT PPARA SNP Missense_Mutation 22 46627967 G T 46 67 BRCA TCGA-AO-A1KT DMD SNP Nonsense_Mutation 23 32459415 C T 21 93 BRCA TCGA-AO-A1KT PORCN SNP Silent 23 48368217 C A 24 54 BRCA TCGA-AO-A1KT HDAC6 SNP Missense_Mutation 23 48682594 A G 8 46 BRCA TCGA-AO-A1KT CD200R1L SNP Silent 3 112546236 A G 6 49 BRCA TCGA-AO-A1KT ZNF445 SNP Missense_Mutation 3 44488743 C A 31 61 BRCA TCGA-AO-A1KT DNAH12 DEL Frame_Shift_Del 3 57458383 TTTGGCGTTTAGATTCCTACAAAAGAAAC - 52 62 BRCA TCGA-AO-A1KT NPY1R SNP Nonsense_Mutation 4 164247179 G C 44 57 BRCA TCGA-AO-A1KT ZNF721 SNP Missense_Mutation 4 436212 T C 51 48 BRCA TCGA-AO-A1KT UGT2A1 SNP Silent 4 70460341 G C 41 49 BRCA TCGA-AO-A1KT GRM6 SNP Missense_Mutation 5 178416347 C T 27 92 BRCA TCGA-AO-A1KT ENC1 SNP Silent 5 73931216 G A 40 45 BRCA TCGA-AO-A1KT ENC1 SNP Missense_Mutation 5 73931919 T A 58 94 BRCA TCGA-AO-A1KT SSBP2 SNP Silent 5 81046829 G C 39 56 BRCA TCGA-AO-A1KT ZFPM2 SNP Silent 8 106815010 C T 27 44 BRCA TCGA-AO-A1KT MFHAS1 SNP Missense_Mutation 8 8747876 T C 57 71 BRCA TCGA-AO-A1KT PLEKHF2 SNP Missense_Mutation 8 96166631 C T 29 85 BRCA TCGA-AO-A1KT MTERFD1 SNP Silent 8 97258550 T C 60 55 BRCA TCGA-AO-A1KT ANKRD20A4 SNP Silent 9 69421946 T C 49 55 BRCA TCGA-AO-A1KT TRPM6 SNP Missense_Mutation 9 77339648 C T 29 66 BRCA TCGA-AO-A1KT TLE1 SNP Splice_site 9 84202743 C A 26 87 BRCA TCGA-AQ-A04H AMPD1 SNP Splice_Site 1 115220952 A G 14 91 BRCA TCGA-AQ-A04H UQCRHL SNP Silent 1 16134040 C T 28 60 BRCA TCGA-AQ-A04H MAEL SNP Missense_Mutation 1 166990949 G A 40 76 BRCA TCGA-AQ-A04H CFHR5 SNP Silent 1 196967316 G A 34 39 BRCA TCGA-AQ-A04H RYR2 SNP Missense_Mutation 1 237551480 G A 39 91 BRCA TCGA-AQ-A04H MAP1LC3C SNP Missense_Mutation 1 242159611 T A 60 73 BRCA TCGA-AQ-A04H TMEM57 SNP Missense_Mutation 1 25783154 C T 22 96 BRCA TCGA-AQ-A04H GATA3 INS Frame_Shift_Ins 10 8115878 - T 24 43 BRCA TCGA-AQ-A04H RIC8A SNP Missense_Mutation 11 212446 G C 40 76 BRCA TCGA-AQ-A04H NAT10 SNP Missense_Mutation 11 34160944 G T 39 100 BRCA TCGA-AQ-A04H PGAP2 SNP Missense_Mutation 11 3845298 C T 31 42 BRCA TCGA-AQ-A04H PPFIA1 SNP Missense_Mutation 11 70202345 G A 40 85 BRCA TCGA-AQ-A04H EPS8 SNP Missense_Mutation 12 15800121 T C 59 51 BRCA TCGA-AQ-A04H PDE3A SNP Missense_Mutation 12 20766410 G A 40 99 BRCA TCGA-AQ-A04H RND1 SNP Missense_Mutation 12 49251827 G C 33 74 BRCA TCGA-AQ-A04H CEP290 SNP Missense_Mutation 12 88442981 C T 17 44 BRCA TCGA-AQ-A04H ATP11A SNP Nonsense_Mutation 13 113439503 G T 41 78 BRCA TCGA-AQ-A04H F7 SNP Silent 13 113771834 C T 29 42 BRCA TCGA-AQ-A04H NIN SNP Nonsense_Mutation 14 51237255 G A 38 63 BRCA TCGA-AQ-A04H OTX2 SNP Nonsense_Mutation 14 57269058 G A 37 82 BRCA TCGA-AQ-A04H NRXN3 SNP Missense_Mutation 14 80328161 G A 41 100 BRCA TCGA-AQ-A04H FLRT2 SNP Missense_Mutation 14 86089263 C T 27 75 BRCA TCGA-AQ-A04H CLDN6 SNP Missense_Mutation 16 3065517 G A 38 78 BRCA TCGA-AQ-A04H ITGAD SNP Silent 16 31424209 G A 38 32 BRCA TCGA-AQ-A04H GLYR1 DEL Frame_Shift_Del 16 4864567 AGGCGAA - 7 90 BRCA TCGA-AQ-A04H ZNF778 SNP Missense_Mutation 16 89291996 G A 39 44 BRCA TCGA-AQ-A04H MYO1D SNP Missense_Mutation 17 30980907 C T 23 94 BRCA TCGA-AQ-A04H RDM1 SNP Missense_Mutation 17 34249590 C A 17 72 BRCA TCGA-AQ-A04H KCNH4 SNP Missense_Mutation 17 40322182 C T 19 96 BRCA TCGA-AQ-A04H TEX14 SNP Missense_Mutation 17 56690897 C T 23 71 BRCA TCGA-AQ-A04H CA4 SNP Missense_Mutation 17 58234014 G A 38 14 BRCA TCGA-AQ-A04H TP53 SNP Missense_Mutation 17 7578259 A C 6 76 BRCA TCGA-AQ-A04H DSEL SNP Missense_Mutation 18 65180278 G A 38 66 BRCA TCGA-AQ-A04H ANKRD12 SNP Missense_Mutation 18 9195691 A G 10 86 BRCA TCGA-AQ-A04H CYP4F12 SNP Missense_Mutation 19 15784437 G A 38 55 BRCA TCGA-AQ-A04H NLRP9 SNP Silent 19 56243838 G A 39 35 BRCA TCGA-AQ-A04H SULT1C3 SNP Missense_Mutation 2 108863661 T C 52 39 BRCA TCGA-AQ-A04H GPR17 SNP Missense_Mutation 2 128409054 G A 40 69 BRCA TCGA-AQ-A04H SCN2A SNP Silent 2 166245632 C A 31 49 BRCA TCGA-AQ-A04H VIL1 SNP Missense_Mutation 2 219295614 C T 27 49 BRCA TCGA-AQ-A04H DGKD SNP Missense_Mutation 2 234357797 G A 37 84 BRCA TCGA-AQ-A04H SGK2 SNP Missense_Mutation 20 42195142 T C 54 57 BRCA TCGA-AQ-A04H KCNB1 SNP Missense_Mutation 20 47989776 G A 43 82 BRCA TCGA-AQ-A04H CDS2 SNP Missense_Mutation 20 5157348 G A 40 96 BRCA TCGA-AQ-A04H RAE1 SNP Missense_Mutation 20 55953115 G A 40 79 BRCA TCGA-AQ-A04H KRTAP20-3 SNP Missense_Mutation 21 32015215 A G 14 51 BRCA TCGA-AQ-A04H MAGEC2 SNP Missense_Mutation 23 141290906 G C 42 56 BRCA TCGA-AQ-A04H GPR64 SNP Missense_Mutation 23 19017274 C A 32 74 BRCA TCGA-AQ-A04H SHOX SNP Silent 23 591785 G A 40 64 BRCA TCGA-AQ-A04H ZPLD1 SNP Missense_Mutation 3 102171957 T G 56 71 BRCA TCGA-AQ-A04H PLSCR2 SNP Missense_Mutation 3 146171913 T G 49 83 BRCA TCGA-AQ-A04H TNFSF10 SNP Silent 3 172224441 A G 2 45 BRCA TCGA-AQ-A04H DGKG SNP Missense_Mutation 3 185969589 C T 18 84 BRCA TCGA-AQ-A04H SCN10A SNP Missense_Mutation 3 38793791 G T 46 67 BRCA TCGA-AQ-A04H CNGA1 SNP Silent 4 47938686 G A 36 54 BRCA TCGA-AQ-A04H FNIP1 SNP Silent 5 130769161 G A 40 54 BRCA TCGA-AQ-A04H PCDHA7 SNP Missense_Mutation 5 140215374 C T 23 61 BRCA TCGA-AQ-A04H PCDHB11 SNP Missense_Mutation 5 140580102 G T 39 49 BRCA TCGA-AQ-A04H PCDHGA5 SNP Missense_Mutation 5 140745927 G A 36 56 BRCA TCGA-AQ-A04H COL19A1 SNP Nonsense_Mutation 6 70840095 G T 47 47 BRCA TCGA-AQ-A04H RABGEF1 SNP Missense_Mutation 7 66270205 A G 4 53 BRCA TCGA-AQ-A04H OXR1 SNP Missense_Mutation 8 107696538 T G 57 89 BRCA TCGA-AQ-A04H COL22A1 SNP Missense_Mutation 8 139697498 C T 25 50 BRCA TCGA-AQ-A04H EIF2C2 SNP Missense_Mutation 8 141549439 A T 7 91 BRCA TCGA-AQ-A04H CSMD1 SNP Missense_Mutation 8 3015484 C T 19 59 BRCA TCGA-AQ-A04H PXDNL SNP Missense_Mutation 8 52359611 G A 37 64 BRCA TCGA-AQ-A04H MRPL15 SNP Missense_Mutation 8 55060178 C G 25 97 BRCA TCGA-AQ-A04H TYRP1 DEL Frame_Shift_Del 9 12702411 ACAA - 14 74 BRCA TCGA-AQ-A04H C9orf171 SNP Silent 9 135374976 G A 41 54 BRCA TCGA-AQ-A04H NPR2 SNP Missense_Mutation 9 35792632 C G 32 77 BRCA TCGA-AQ-A04H IPPK SNP Silent 9 95378177 G A 40 41 BRCA TCGA-AQ-A04J ANP32E SNP Silent 1 150202960 G C 35 51 BRCA TCGA-AQ-A04J ATP1A2 SNP Missense_Mutation 1 160098503 A G 11 88 BRCA TCGA-AQ-A04J ANO5 SNP Missense_Mutation 11 22294371 C A 30 77 BRCA TCGA-AQ-A04J LRRC4C SNP Missense_Mutation 11 40136678 G C 41 100 BRCA TCGA-AQ-A04J CRY2 SNP Silent 11 45880386 A T 15 64 BRCA TCGA-AQ-A04J OR4A15 SNP Missense_Mutation 11 55135556 C T 19 62 BRCA TCGA-AQ-A04J LRRC16B SNP Missense_Mutation 14 24534915 G A 39 76 BRCA TCGA-AQ-A04J GZMH SNP Missense_Mutation 14 25075891 T A 60 44 BRCA TCGA-AQ-A04J NIN SNP Silent 14 51228556 T C 60 49 BRCA TCGA-AQ-A04J NIN SNP Splice_Site 14 51238049 C A 17 96 BRCA TCGA-AQ-A04J TSR1 SNP Missense_Mutation 17 2236988 T C 50 46 BRCA TCGA-AQ-A04J TP53 SNP Missense_Mutation 17 7579355 A G 7 84 BRCA TCGA-AQ-A04J ZNF878 SNP Missense_Mutation 19 12154855 T A 56 46 BRCA TCGA-AQ-A04J OR1I1 SNP Missense_Mutation 19 15198108 G A 40 54 BRCA TCGA-AQ-A04J PDE4C SNP Missense_Mutation 19 18332958 A T 11 86 BRCA TCGA-AQ-A04J SYNGR4 SNP Missense_Mutation 19 48879441 C T 22 58 BRCA TCGA-AQ-A04J XIRP2 SNP Missense_Mutation 2 168101657 A G 1 61 BRCA TCGA-AQ-A04J BZW1 SNP Missense_Mutation 2 201683608 C G 26 100 BRCA TCGA-AQ-A04J OBSL1 SNP Silent 2 220432023 G A 40 50 BRCA TCGA-AQ-A04J AQP12A SNP Missense_Mutation 2 241631442 G A 38 64 BRCA TCGA-AQ-A04J SUPT7L SNP Silent 2 27876562 C T 28 55 BRCA TCGA-AQ-A04J SRBD1 SNP Silent 2 45812872 G A 47 56 BRCA TCGA-AQ-A04J ALMS1 SNP Missense_Mutation 2 73675332 C T 18 51 BRCA TCGA-AQ-A04J TRPC4AP SNP Silent 20 33623023 G A 41 54 BRCA TCGA-AQ-A04J GPCPD1 SNP Silent 20 5556511 A C 11 48 BRCA TCGA-AQ-A04J SON SNP Silent 21 34922545 G T 38 53 BRCA TCGA-AQ-A04J CXorf64 SNP Missense_Mutation 23 125955269 G T 43 44 BRCA TCGA-AQ-A04J KCND1 SNP Missense_Mutation 23 48825777 C G 27 96 BRCA TCGA-AQ-A04J UBA5 SNP Missense_Mutation 3 132379431 G A 39 53 BRCA TCGA-AQ-A04J ZNF518B SNP Missense_Mutation 4 10447420 T A 55 90 BRCA TCGA-AQ-A04J LARP7 SNP Missense_Mutation 4 113567531 C A 32 80 BRCA TCGA-AQ-A04J DCHS2 SNP Missense_Mutation 4 155160373 A C 9 58 BRCA TCGA-AQ-A04J ISOC1 SNP Nonsense_Mutation 5 128448599 C T 29 92 BRCA TCGA-AQ-A04J SOBP SNP Nonsense_Mutation 6 107908293 G T 45 96 BRCA TCGA-AQ-A04J MUC21 SNP Silent 6 30955398 C A 29 62 BRCA TCGA-AQ-A04J FOXP4 DEL Frame_Shift_Del 6 41557744 TC - 58 72 BRCA TCGA-AQ-A04J OXR1 SNP Missense_Mutation 8 107718659 A C 10 51 BRCA TCGA-AQ-A04J CYP7B1 SNP Missense_Mutation 8 65528565 G T 46 47 BRCA TCGA-AQ-A04J ERMP1 SNP Missense_Mutation 9 5805716 C A 17 51 BRCA TCGA-AQ-A04L SLC5A9 SNP Nonsense_Mutation 1 48698155 C T 29 78 BRCA TCGA-AQ-A04L RPAP2 DEL Frame_Shift_Del 1 92801915 T - 56 75 BRCA TCGA-AQ-A04L ENTPD7 DEL Frame_Shift_Del 10 101462392 G - 47 53 BRCA TCGA-AQ-A04L KCNMA1 SNP Missense_Mutation 10 78787645 A G 6 69 BRCA TCGA-AQ-A04L SFTPA1 SNP Silent 10 81372138 C T 30 47 BRCA TCGA-AQ-A04L RNLS SNP Nonsense_Mutation 10 90122432 G A 37 90 BRCA TCGA-AQ-A04L DNAH10 SNP Missense_Mutation 12 124265682 T A 58 38 BRCA TCGA-AQ-A04L KCNA6 SNP Missense_Mutation 12 4919736 G A 38 97 BRCA TCGA-AQ-A04L PHC1B SNP Missense_Mutation 12 55807465 G T 44 52 BRCA TCGA-AQ-A04L ANKRD52 SNP Silent 12 56646569 G A 39 51 BRCA TCGA-AQ-A04L RBM23 SNP Missense_Mutation 14 23374208 C A 31 86 BRCA TCGA-AQ-A04L C14orf38 SNP Missense_Mutation 14 60004781 T C 60 23 BRCA TCGA-AQ-A04L SIX1 SNP Silent 14 61113136 G A 40 54 BRCA TCGA-AQ-A04L IL16 SNP Silent 15 81598849 C T 19 40 BRCA TCGA-AQ-A04L APOBR SNP Missense_Mutation 16 28508338 C T 27 53 BRCA TCGA-AQ-A04L ZNF720 SNP Nonsense_Mutation 16 31734054 C A 19 55 BRCA TCGA-AQ-A04L CSH2 SNP Missense_Mutation 17 61950968 C T 25 50 BRCA TCGA-AQ-A04L TP53 SNP Missense_Mutation 17 7578271 T C 51 76 BRCA TCGA-AQ-A04L SWSAP1 DEL Frame_Shift_Del 19 11485555 CAAAG - 29 74 BRCA TCGA-AQ-A04L CALR SNP Missense_Mutation 19 13054630 A G 11 89 BRCA TCGA-AQ-A04L PSMD8 SNP Missense_Mutation 19 38872860 G A 38 82 BRCA TCGA-AQ-A04L CYP2A13 SNP Silent 19 41596335 C T 24 51 BRCA TCGA-AQ-A04L TMIGD2 SNP Silent 19 4298146 G A 38 40 BRCA TCGA-AQ-A04L PLIN5 SNP Silent 19 4529859 G A 37 33 BRCA TCGA-AQ-A04L KLK5 SNP Missense_Mutation 19 51453283 C T 23 31 BRCA TCGA-AQ-A04L HTR2B DEL Frame_Shift_Del 2 231973672 A - 13 52 BRCA TCGA-AQ-A04L L1CAM SNP Silent 23 153134370 C T 19 35 BRCA TCGA-AQ-A04L GAGE10 SNP Missense_Mutation 23 49173740 C G 30 51 BRCA TCGA-AQ-A04L PHF8 DEL Frame_Shift_Del 23 54029058 AA - 13 89 BRCA TCGA-AQ-A04L NHSL2 SNP Missense_Mutation 23 71359877 G T 37 93 BRCA TCGA-AQ-A04L SCN5A SNP Missense_Mutation 3 38601670 C T 19 97 BRCA TCGA-AQ-A04L CACNA2D2 SNP Missense_Mutation 3 50404289 G C 44 72 BRCA TCGA-AQ-A04L ZBTB49 DEL Frame_Shift_Del 4 4304086 C - 30 46 BRCA TCGA-AQ-A04L YTHDC1 DEL In_Frame_Del 4 69202888 TCTTCCTCCTCCTCC - 62 85 BRCA TCGA-AQ-A04L PDGFRB SNP Silent 5 149504348 C T 23 40 BRCA TCGA-AQ-A04L GABRA6 SNP Missense_Mutation 5 161128618 C A 18 57 BRCA TCGA-AQ-A04L CEP85L SNP Silent 6 118953701 A G 12 55 BRCA TCGA-AQ-A04L OLIG3 SNP Missense_Mutation 6 137815024 C T 23 100 BRCA TCGA-AQ-A04L FLNC SNP Missense_Mutation 7 128475401 G A 43 86 BRCA TCGA-AQ-A04L SSPO SNP Splice_site 7 149500315 A C 10 59 BRCA TCGA-AQ-A04L NT5C3 SNP Missense_Mutation 7 33075569 C G 32 79 BRCA TCGA-AQ-A04L CYP3A4 SNP Missense_Mutation 7 99367407 G A 42 47 BRCA TCGA-AQ-A04L UBR5 SNP Nonsense_Mutation 8 103271312 C A 32 100 BRCA TCGA-AQ-A04L KIAA1456 SNP Missense_Mutation 8 12878609 G A 40 98 BRCA TCGA-AQ-A04L GAPVD1 SNP Missense_Mutation 9 128061273 C A 17 100 BRCA TCGA-AQ-A04L ALDH1A1 SNP Silent 9 75516163 G C 45 54 BRCA TCGA-AQ-A0Y5 AGL SNP Splice_Site 1 100350009 T C 57 90 BRCA TCGA-AQ-A0Y5 ZNF281 SNP Silent 1 200377724 G C 45 87 BRCA TCGA-AQ-A0Y5 CACNA1S SNP Silent 1 201038705 G T 37 47 BRCA TCGA-AQ-A0Y5 CNST SNP Missense_Mutation 1 246805311 G C 35 53 BRCA TCGA-AQ-A0Y5 OR2L13 SNP Silent 1 248262902 C A 21 52 BRCA TCGA-AQ-A0Y5 ZNF642 SNP Missense_Mutation 1 40961166 G A 38 65 BRCA TCGA-AQ-A0Y5 ZCCHC11 SNP Missense_Mutation 1 52891167 C T 31 65 BRCA TCGA-AQ-A0Y5 LRP8 SNP Missense_Mutation 1 53729901 C T 27 57 BRCA TCGA-AQ-A0Y5 GBP5 SNP Missense_Mutation 1 89729432 C T 23 61 BRCA TCGA-AQ-A0Y5 PPRC1 SNP Missense_Mutation 10 103899095 A C 8 58 BRCA TCGA-AQ-A0Y5 DSCAML1 SNP Silent 11 117306505 T C 59 42 BRCA TCGA-AQ-A0Y5 PTDSS2 SNP Missense_Mutation 11 489687 G A 40 94 BRCA TCGA-AQ-A0Y5 UBQLN3 SNP Missense_Mutation 11 5529582 T G 52 55 BRCA TCGA-AQ-A0Y5 OR5AK2 SNP Splice_site 11 56756390 T C 51 65 BRCA TCGA-AQ-A0Y5 SLC22A6 SNP Missense_Mutation 11 62751063 G A 39 73 BRCA TCGA-AQ-A0Y5 EPS8 SNP Nonsense_Mutation 12 15777330 G A 45 77 BRCA TCGA-AQ-A0Y5 CACNA1C SNP Silent 12 2602510 C T 30 62 BRCA TCGA-AQ-A0Y5 CKAP2 SNP Missense_Mutation 13 53049138 G T 46 53 BRCA TCGA-AQ-A0Y5 MYH6 SNP Missense_Mutation 14 23863422 G A 40 98 BRCA TCGA-AQ-A0Y5 RYR3 SNP Missense_Mutation 15 33858967 G A 39 74 BRCA TCGA-AQ-A0Y5 C15orf44 SNP Missense_Mutation 15 65884055 C T 30 100 BRCA TCGA-AQ-A0Y5 RAB11A SNP Missense_Mutation 15 66161954 C T 24 72 BRCA TCGA-AQ-A0Y5 VWA3A SNP Silent 16 22122217 C T 31 38 BRCA TCGA-AQ-A0Y5 HMOX2 SNP Missense_Mutation 16 4558020 G A 42 99 BRCA TCGA-AQ-A0Y5 C17orf85 SNP Missense_Mutation 17 3725313 C G 20 81 BRCA TCGA-AQ-A0Y5 RHPN2 SNP Silent 19 33493752 G A 45 53 BRCA TCGA-AQ-A0Y5 THSD7B SNP Silent 2 138373750 C T 27 53 BRCA TCGA-AQ-A0Y5 RALY SNP Missense_Mutation 20 32661659 G A 37 68 BRCA TCGA-AQ-A0Y5 PIK3CA SNP Missense_Mutation 3 178928079 G A 33 98 BRCA TCGA-AQ-A0Y5 DNAH1 SNP Silent 3 52365312 G T 43 48 BRCA TCGA-AQ-A0Y5 CACNA1D SNP Missense_Mutation 3 53810978 T A 59 93 BRCA TCGA-AQ-A0Y5 ADAMTS9 SNP Missense_Mutation 3 64666930 C T 27 48 BRCA TCGA-AQ-A0Y5 OR5K2 SNP Missense_Mutation 3 98217306 G A 33 50 BRCA TCGA-AQ-A0Y5 FAM190A SNP Missense_Mutation 4 91549368 G C 33 73 BRCA TCGA-AQ-A0Y5 PCDHGB1 SNP Silent 5 140730085 G A 41 51 BRCA TCGA-AQ-A0Y5 LAMA2 SNP Splice_site 6 129823915 C T 23 67 BRCA TCGA-AQ-A0Y5 SLC22A1 SNP Missense_Mutation 6 160543262 G A 38 49 BRCA TCGA-AQ-A0Y5 TINAG SNP Missense_Mutation 6 54214608 C T 19 54 BRCA TCGA-AQ-A0Y5 MUC12 SNP Missense_Mutation 7 100648354 C T 29 60 BRCA TCGA-AQ-A0Y5 THSD7A SNP Missense_Mutation 7 11630106 A T 14 51 BRCA TCGA-AQ-A0Y5 CUL1 SNP Missense_Mutation 7 148457520 G C 33 94 BRCA TCGA-AQ-A0Y5 TNS3 SNP Missense_Mutation 7 47408046 G C 41 55 BRCA TCGA-AQ-A0Y5 TMEM71 SNP Missense_Mutation 8 133764157 C T 31 76 BRCA TCGA-AQ-A0Y5 LOXL2 SNP Missense_Mutation 8 23217687 C G 28 58 BRCA TCGA-AQ-A1H2 SPEN INS Frame_Shift_Ins 1 16261272 - CT 9 89 BRCA TCGA-AQ-A1H2 CLSPN SNP Nonsense_Mutation 1 36204752 G A 37 70 BRCA TCGA-AQ-A1H2 COL9A2 SNP Silent 1 40778134 T A 58 72 BRCA TCGA-AQ-A1H2 DCLRE1A SNP Silent 10 115607027 T C 59 50 BRCA TCGA-AQ-A1H2 DYNC2H1 SNP Silent 11 102991220 A C 14 53 BRCA TCGA-AQ-A1H2 LPCAT4 SNP Nonsense_Mutation 15 34654803 A T 8 58 BRCA TCGA-AQ-A1H2 CSPG4 SNP Missense_Mutation 15 75982666 C A 19 48 BRCA TCGA-AQ-A1H2 MNT SNP Missense_Mutation 17 2291304 C G 30 93 BRCA TCGA-AQ-A1H2 POLR2A SNP Missense_Mutation 17 7400102 G A 39 94 BRCA TCGA-AQ-A1H2 TRAPPC1 SNP Missense_Mutation 17 7833976 C T 31 68 BRCA TCGA-AQ-A1H2 MC2R SNP Missense_Mutation 18 13884764 C T 27 65 BRCA TCGA-AQ-A1H2 MGAT5 SNP Splice_Site 2 135028123 T G 57 90 BRCA TCGA-AQ-A1H2 GPR113 SNP Silent 2 26533779 C T 29 52 BRCA TCGA-AQ-A1H2 PRPF6 SNP Missense_Mutation 20 62657296 A G 2 93 BRCA TCGA-AQ-A1H2 GRIK1 SNP Missense_Mutation 21 30909667 A G 11 66 BRCA TCGA-AQ-A1H2 KLHL22 SNP Missense_Mutation 22 20796481 C A 27 64 BRCA TCGA-AQ-A1H2 SLITRK2 SNP Silent 23 144904015 T A 55 81 BRCA TCGA-AQ-A1H2 SPRY3 SNP Missense_Mutation 23 155004063 C T 32 81 BRCA TCGA-AQ-A1H2 YY2 SNP Silent 23 21874875 C T 27 50 BRCA TCGA-AQ-A1H2 MYH15 SNP Nonsense_Mutation 3 108129757 G A 46 99 BRCA TCGA-AQ-A1H2 DIRC2 DEL In_Frame_Del 3 122578962 CTC - 32 79 BRCA TCGA-AQ-A1H2 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-AQ-A1H2 KIF9 SNP Missense_Mutation 3 47308543 A C 3 65 BRCA TCGA-AQ-A1H2 ROBO1 SNP Missense_Mutation 3 78987810 C T 17 100 BRCA TCGA-AQ-A1H2 FAT1 SNP Missense_Mutation 4 187542456 C T 27 41 BRCA TCGA-AQ-A1H2 PHOX2B SNP Missense_Mutation 4 41749389 C T 31 87 BRCA TCGA-AQ-A1H2 PCDHGA2 SNP Missense_Mutation 5 140718824 T A 55 91 BRCA TCGA-AQ-A1H2 CPLX2 SNP Silent 5 175307021 G A 42 52 BRCA TCGA-AQ-A1H2 LPA SNP Missense_Mutation 6 160962167 C G 18 84 BRCA TCGA-AQ-A1H2 MDGA1 SNP Missense_Mutation 6 37619916 C G 27 84 BRCA TCGA-AQ-A1H2 ENPP2 SNP Missense_Mutation 8 120598499 G A 40 75 BRCA TCGA-AQ-A1H3 KIAA2013 SNP Missense_Mutation 1 11982841 T C 50 89 BRCA TCGA-AQ-A1H3 INSRR SNP Missense_Mutation 1 156823744 T A 54 87 BRCA TCGA-AQ-A1H3 NFIA SNP Silent 1 61848997 G A 40 40 BRCA TCGA-AQ-A1H3 TCTN1 SNP Missense_Mutation 12 111085646 A C 6 52 BRCA TCGA-AQ-A1H3 TBX3 INS Frame_Shift_Ins 12 115115438 - T 48 69 BRCA TCGA-AQ-A1H3 CDKN1B INS Frame_Shift_Ins 12 12871006 - GG 11 63 BRCA TCGA-AQ-A1H3 CHD4 SNP Missense_Mutation 12 6702279 C T 23 100 BRCA TCGA-AQ-A1H3 SIX6 SNP Missense_Mutation 14 60976319 G A 38 99 BRCA TCGA-AQ-A1H3 HEATR4 SNP Missense_Mutation 14 73976100 G A 38 56 BRCA TCGA-AQ-A1H3 RYR3 SNP Silent 15 34015010 C T 19 35 BRCA TCGA-AQ-A1H3 DUOX2 SNP Silent 15 45388167 G A 39 40 BRCA TCGA-AQ-A1H3 CCDC135 SNP Missense_Mutation 16 57762336 T G 59 55 BRCA TCGA-AQ-A1H3 CBFB DEL Frame_Shift_Del 16 67070640 AGAA - 15 58 BRCA TCGA-AQ-A1H3 CD33 SNP Silent 19 51729330 C T 19 33 BRCA TCGA-AQ-A1H3 LRP1B SNP Missense_Mutation 2 141081609 T C 49 57 BRCA TCGA-AQ-A1H3 SNX17 SNP Missense_Mutation 2 27598768 G A 38 67 BRCA TCGA-AQ-A1H3 ARHGEF6 SNP Missense_Mutation 23 135827435 G C 48 56 BRCA TCGA-AQ-A1H3 STARD8 SNP Missense_Mutation 23 67938428 C T 19 62 BRCA TCGA-AQ-A1H3 GATA2 SNP Missense_Mutation 3 128200691 C T 27 98 BRCA TCGA-AQ-A1H3 MECOM SNP Silent 3 168802736 C T 23 25 BRCA TCGA-AQ-A1H3 COL7A1 SNP Silent 3 48630811 C T 24 51 BRCA TCGA-AQ-A1H3 PCDHA3 SNP Missense_Mutation 5 140180885 G A 40 53 BRCA TCGA-AQ-A1H3 PCDHGA3 SNP Silent 5 140725928 G A 39 33 BRCA TCGA-AQ-A1H3 PAPOLB SNP Silent 7 4900824 C T 22 61 BRCA TCGA-AQ-A1H3 NCF1 SNP Missense_Mutation 7 74193672 C T 19 66 BRCA TCGA-AQ-A1H3 EXTL3 SNP Nonsense_Mutation 8 28595120 C G 17 65 BRCA TCGA-AQ-A1H3 FGFR1 SNP Silent 8 38314914 T C 59 45 BRCA TCGA-AQ-A1H3 RB1CC1 SNP Splice_Site 8 53596281 T G 53 89 BRCA TCGA-AR-A0TP HIST2H2AC SNP Silent 1 149858815 G A 46 51 BRCA TCGA-AR-A0TP S100A10 SNP Missense_Mutation 1 151958603 A C 8 83 BRCA TCGA-AR-A0TP HRNR SNP Silent 1 152186053 A G 8 49 BRCA TCGA-AR-A0TP ARHGEF10L SNP Silent 1 17982535 G A 37 53 BRCA TCGA-AR-A0TP LCK SNP Silent 1 32742302 G A 34 69 BRCA TCGA-AR-A0TP RIMS3 SNP Missense_Mutation 1 41098846 A T 3 87 BRCA TCGA-AR-A0TP IL23R SNP Missense_Mutation 1 67635217 G T 47 51 BRCA TCGA-AR-A0TP HMX3 SNP Nonsense_Mutation 10 124896894 C T 21 77 BRCA TCGA-AR-A0TP KRTAP5-4 SNP Silent 11 1642982 A G 6 54 BRCA TCGA-AR-A0TP DCDC5 SNP Missense_Mutation 11 30953328 G A 40 47 BRCA TCGA-AR-A0TP MS4A14 SNP Missense_Mutation 11 60165424 A T 6 27 BRCA TCGA-AR-A0TP MYO1H SNP Splice_Site 12 109841786 G A 35 91 BRCA TCGA-AR-A0TP PDE3A SNP Missense_Mutation 12 20766614 G C 33 98 BRCA TCGA-AR-A0TP ABCC9 INS Frame_Shift_Ins 12 22035726 - G 27 23 BRCA TCGA-AR-A0TP KCNA6 SNP Missense_Mutation 12 4919815 G T 44 60 BRCA TCGA-AR-A0TP RDH5 SNP Missense_Mutation 12 56115089 G T 47 95 BRCA TCGA-AR-A0TP APOF SNP Missense_Mutation 12 56755521 G T 46 47 BRCA TCGA-AR-A0TP CCNA1 SNP Missense_Mutation 13 37016315 C A 18 70 BRCA TCGA-AR-A0TP CCNB1IP1 SNP Missense_Mutation 14 20781865 G C 46 56 BRCA TCGA-AR-A0TP HECTD1 SNP Missense_Mutation 14 31637616 C T 29 100 BRCA TCGA-AR-A0TP GPHN SNP Silent 14 67390979 C T 29 81 BRCA TCGA-AR-A0TP E4F1 SNP Silent 16 2273638 G A 43 63 BRCA TCGA-AR-A0TP ABCA3 SNP Silent 16 2334368 C A 30 51 BRCA TCGA-AR-A0TP SALL1 SNP Missense_Mutation 16 51173646 C T 21 67 BRCA TCGA-AR-A0TP SOLH SNP Missense_Mutation 16 603031 C T 18 83 BRCA TCGA-AR-A0TP PIEZO1 SNP Silent 16 88782406 C T 25 53 BRCA TCGA-AR-A0TP RARA DEL In_Frame_Del 17 38508182 AAG - 5 87 BRCA TCGA-AR-A0TP CSH2 SNP Missense_Mutation 17 61949915 C A 27 47 BRCA TCGA-AR-A0TP TP53 SNP Missense_Mutation 17 7577120 C G 19 94 BRCA TCGA-AR-A0TP LAMA1 SNP Silent 18 6978265 A G 7 2 BRCA TCGA-AR-A0TP ZNF506 SNP Silent 19 19905658 A G 6 63 BRCA TCGA-AR-A0TP LMTK3 DEL Frame_Shift_Del 19 49004803 TGCGCAGGGCCAGGTCGC - 63 82 BRCA TCGA-AR-A0TP SCAF1 SNP Silent 19 50157992 C G 24 53 BRCA TCGA-AR-A0TP ZNF577 SNP Missense_Mutation 19 52381666 T C 62 66 BRCA TCGA-AR-A0TP MUC16 SNP Missense_Mutation 19 9090622 C G 26 50 BRCA TCGA-AR-A0TP SCN2A SNP Missense_Mutation 2 166152454 C T 19 68 BRCA TCGA-AR-A0TP COL6A2 SNP Missense_Mutation 21 47545207 G A 41 82 BRCA TCGA-AR-A0TP PCNT SNP Missense_Mutation 21 47783642 A G 10 62 BRCA TCGA-AR-A0TP LIF SNP Missense_Mutation 22 30640840 A C 6 37 BRCA TCGA-AR-A0TP PLA2G6 DEL Frame_Shift_Del 22 38512192 TCAGACAGTGTCCCTGTCA - 58 86 BRCA TCGA-AR-A0TP IRS4 SNP Missense_Mutation 23 107976825 C A 28 71 BRCA TCGA-AR-A0TP WDR44 SNP Missense_Mutation 23 117576637 G A 36 96 BRCA TCGA-AR-A0TP TBC1D25 SNP Splice_site 23 48398185 G A 41 60 BRCA TCGA-AR-A0TP KIAA2022 SNP Missense_Mutation 23 73963226 C A 30 43 BRCA TCGA-AR-A0TP HMGN5 SNP Missense_Mutation 23 80370453 C T 23 53 BRCA TCGA-AR-A0TP ATP2C1 DEL Frame_Shift_Del 3 130694222 T - 52 88 BRCA TCGA-AR-A0TP NEK11 DEL In_Frame_Del 3 130947412 TGATGCATT - 55 41 BRCA TCGA-AR-A0TP NME9 SNP Missense_Mutation 3 138023764 C T 19 48 BRCA TCGA-AR-A0TP IQCF6 DEL Frame_Shift_Del 3 51812782 GCCTGCGG - 38 54 BRCA TCGA-AR-A0TP SEC24D SNP Missense_Mutation 4 119689345 C G 25 100 BRCA TCGA-AR-A0TP MSMO1 SNP Missense_Mutation 4 166254530 C G 17 54 BRCA TCGA-AR-A0TP TBC1D19 SNP Missense_Mutation 4 26685350 G T 47 56 BRCA TCGA-AR-A0TP PDS5A SNP Missense_Mutation 4 39864689 T G 54 92 BRCA TCGA-AR-A0TP BEND4 SNP Silent 4 42119673 G A 40 40 BRCA TCGA-AR-A0TP LPHN3 DEL Frame_Shift_Del 4 62812716 A - 9 92 BRCA TCGA-AR-A0TP MAN2A1 SNP Missense_Mutation 5 109202637 A G 9 81 BRCA TCGA-AR-A0TP DTWD2 SNP Missense_Mutation 5 118176639 T A 52 50 BRCA TCGA-AR-A0TP KLHL3 SNP Silent 5 136974658 G C 34 54 BRCA TCGA-AR-A0TP ROS1 SNP Missense_Mutation 6 117609902 G C 40 59 BRCA TCGA-AR-A0TP SMPDL3A SNP Missense_Mutation 6 123126231 A G 1 52 BRCA TCGA-AR-A0TP C6orf15 SNP Missense_Mutation 6 31079720 G C 41 74 BRCA TCGA-AR-A0TP TFAP2B SNP Missense_Mutation 6 50796376 G C 36 68 BRCA TCGA-AR-A0TP PKHD1 SNP Silent 6 51609274 C T 24 47 BRCA TCGA-AR-A0TP PRKAR2B SNP Missense_Mutation 7 106786812 A G 12 91 BRCA TCGA-AR-A0TP TNS3 SNP Missense_Mutation 7 47440029 C A 18 56 BRCA TCGA-AR-A0TP ELN SNP Missense_Mutation 7 73474233 G C 39 71 BRCA TCGA-AR-A0TP RFC2 SNP Missense_Mutation 7 73668685 G A 38 59 BRCA TCGA-AR-A0TP SEMA3D DEL Frame_Shift_Del 7 84671502 A - 13 67 BRCA TCGA-AR-A0TP PKHD1L1 SNP Silent 8 110467029 T C 55 44 BRCA TCGA-AR-A0TP LRRC24 SNP Missense_Mutation 8 145748740 C T 30 61 BRCA TCGA-AR-A0TP ZFHX4 SNP Missense_Mutation 8 77767858 A G 2 63 BRCA TCGA-AR-A0TP C9orf43 SNP Missense_Mutation 9 116175849 G T 42 70 BRCA TCGA-AR-A0TP FBXO10 SNP Missense_Mutation 9 37512576 T G 55 71 BRCA TCGA-AR-A0TQ FCRL5 SNP Missense_Mutation 1 157512693 C T 26 50 BRCA TCGA-AR-A0TQ DDR2 SNP Missense_Mutation 1 162737075 G C 42 96 BRCA TCGA-AR-A0TQ NRAP DNP Missense_Mutation 10 115351970 TA AG 53 64 BRCA TCGA-AR-A0TQ DUSP13 SNP Missense_Mutation 10 76854523 C T 26 52 BRCA TCGA-AR-A0TQ DLG5 SNP Silent 10 79590037 C T 23 27 BRCA TCGA-AR-A0TQ GATA3 INS Frame_Shift_Ins 10 8111503 - C 35 100 BRCA TCGA-AR-A0TQ PLCE1 SNP Missense_Mutation 10 96025410 G A 37 100 BRCA TCGA-AR-A0TQ MS4A6E SNP Silent 11 60102443 G A 33 48 BRCA TCGA-AR-A0TQ SLC25A45 SNP Missense_Mutation 11 65146870 C A 22 66 BRCA TCGA-AR-A0TQ CDADC1 SNP Missense_Mutation 13 49852559 A C 16 88 BRCA TCGA-AR-A0TQ TJP1 SNP Missense_Mutation 15 30011144 C T 30 99 BRCA TCGA-AR-A0TQ ARIH1 SNP Silent 15 72767316 C T 17 71 BRCA TCGA-AR-A0TQ UNC45A SNP Silent 15 91479663 G T 41 50 BRCA TCGA-AR-A0TQ TXNDC11 SNP Missense_Mutation 16 11773412 C T 23 48 BRCA TCGA-AR-A0TQ ZKSCAN2 SNP Missense_Mutation 16 25264349 G A 33 67 BRCA TCGA-AR-A0TQ TOX3 SNP Nonsense_Mutation 16 52484429 G T 44 52 BRCA TCGA-AR-A0TQ BRIP1 SNP Missense_Mutation 17 59876540 C T 29 96 BRCA TCGA-AR-A0TQ POLG2 SNP Missense_Mutation 17 62479061 C T 32 59 BRCA TCGA-AR-A0TQ POLG2 SNP Missense_Mutation 17 62479064 C T 30 78 BRCA TCGA-AR-A0TQ EPS15L1 SNP Silent 19 16528407 C T 29 54 BRCA TCGA-AR-A0TQ EMR4P SNP Missense_Mutation 19 6971253 T A 51 59 BRCA TCGA-AR-A0TQ AGAP1 SNP Silent 2 237032619 C A 22 57 BRCA TCGA-AR-A0TQ NCOA3 SNP Missense_Mutation 20 46264755 C T 29 83 BRCA TCGA-AR-A0TQ PTPN1 SNP Missense_Mutation 20 49197812 G C 33 92 BRCA TCGA-AR-A0TQ ATP9A SNP Missense_Mutation 20 50286635 C A 32 75 BRCA TCGA-AR-A0TQ TNFRSF6B SNP Silent 20 62328432 T C 56 22 BRCA TCGA-AR-A0TQ SBF1 SNP Missense_Mutation 22 50898033 C T 27 97 BRCA TCGA-AR-A0TQ CXorf58 SNP Silent 23 23957372 G A 39 44 BRCA TCGA-AR-A0TQ SCN10A SNP Silent 3 38751020 C A 29 57 BRCA TCGA-AR-A0TQ ADD1 SNP Missense_Mutation 4 2877718 G A 37 85 BRCA TCGA-AR-A0TQ ACSL6 SNP Missense_Mutation 5 131308520 C T 27 89 BRCA TCGA-AR-A0TQ TIMD4 SNP Missense_Mutation 5 156381720 C T 18 70 BRCA TCGA-AR-A0TQ ITGA2 SNP Splice_Site 5 52369090 G T 44 79 BRCA TCGA-AR-A0TQ PIK3R1 SNP Missense_Mutation 5 67589627 G A 45 97 BRCA TCGA-AR-A0TQ BAK1 SNP Silent 6 33545325 C T 25 45 BRCA TCGA-AR-A0TQ TBC1D22B SNP Missense_Mutation 6 37247157 G A 39 67 BRCA TCGA-AR-A0TQ DNAH8 SNP Missense_Mutation 6 38750824 C G 30 49 BRCA TCGA-AR-A0TQ TRERF1 DEL In_Frame_Del 6 42231239 GGCGGA - 39 61 BRCA TCGA-AR-A0TQ RIMS1 SNP Missense_Mutation 6 72678714 G T 46 76 BRCA TCGA-AR-A0TQ SERPINE1 SNP Silent 7 100780349 C T 30 33 BRCA TCGA-AR-A0TQ CAV1 SNP Splice_site 7 116165115 G T 34 81 BRCA TCGA-AR-A0TQ CHRM2 SNP Silent 7 136700644 G T 47 61 BRCA TCGA-AR-A0TQ GIMAP5 SNP Missense_Mutation 7 150439553 C T 23 83 BRCA TCGA-AR-A0TQ LOC643955 SNP Missense_Mutation 7 62753195 T C 51 61 BRCA TCGA-AR-A0TR FCRL5 SNP Missense_Mutation 1 157516743 A T 4 35 BRCA TCGA-AR-A0TR LIN9 DEL In_Frame_Del 1 226421155 CTT - 28 82 BRCA TCGA-AR-A0TR MORN1 SNP Missense_Mutation 1 2267971 G A 41 55 BRCA TCGA-AR-A0TR CHML SNP Missense_Mutation 1 241797975 T C 55 51 BRCA TCGA-AR-A0TR ABLIM1 SNP Missense_Mutation 10 116335275 C T 23 100 BRCA TCGA-AR-A0TR ACADSB SNP Missense_Mutation 10 124768562 T C 59 49 BRCA TCGA-AR-A0TR KIAA1279 SNP Splice_site 10 70764802 G T 44 56 BRCA TCGA-AR-A0TR APLP2 DEL Frame_Shift_Del 11 130003552 A - 9 87 BRCA TCGA-AR-A0TR MADD SNP Missense_Mutation 11 47350233 G A 34 79 BRCA TCGA-AR-A0TR NELL2 DEL Frame_Shift_Del 12 45097587 T - 55 54 BRCA TCGA-AR-A0TR ADCY6 SNP Silent 12 49164616 G C 47 62 BRCA TCGA-AR-A0TR ATN1 SNP Missense_Mutation 12 7045035 C T 17 62 BRCA TCGA-AR-A0TR PAPOLA SNP Silent 14 97022708 A G 6 50 BRCA TCGA-AR-A0TR PPIP5K1 SNP Missense_Mutation 15 43873257 C T 26 100 BRCA TCGA-AR-A0TR ADAMTSL3 SNP Missense_Mutation 15 84539708 C G 29 53 BRCA TCGA-AR-A0TR C16orf54 SNP Missense_Mutation 16 29756269 G T 42 63 BRCA TCGA-AR-A0TR FANCA SNP Missense_Mutation 16 89815165 G A 39 36 BRCA TCGA-AR-A0TR C17orf67 SNP Missense_Mutation 17 54872495 T C 55 67 BRCA TCGA-AR-A0TR METTL2A INS Frame_Shift_Ins 17 60512605 - T 32 62 BRCA TCGA-AR-A0TR DNAH17 SNP Splice_Site 17 76455082 C T 19 99 BRCA TCGA-AR-A0TR KIAA1683 SNP Missense_Mutation 19 18368606 G A 44 61 BRCA TCGA-AR-A0TR ZFP82 SNP Missense_Mutation 19 36883819 C T 31 78 BRCA TCGA-AR-A0TR SLC17A7 SNP Missense_Mutation 19 49934639 G A 41 91 BRCA TCGA-AR-A0TR FPR3 SNP Missense_Mutation 19 52327735 C T 28 84 BRCA TCGA-AR-A0TR MYO1F SNP Missense_Mutation 19 8587693 G T 42 59 BRCA TCGA-AR-A0TR ARL6IP6 SNP Silent 2 153577066 G A 45 58 BRCA TCGA-AR-A0TR ITGA6 SNP Splice_site 2 173332209 C T 28 67 BRCA TCGA-AR-A0TR PMS1 SNP Missense_Mutation 2 190719470 C T 31 50 BRCA TCGA-AR-A0TR DYTN SNP Silent 2 207572064 C T 23 7 BRCA TCGA-AR-A0TR SMYD1 SNP Silent 2 88387504 C T 18 38 BRCA TCGA-AR-A0TR FAM110A SNP Missense_Mutation 20 825502 C T 23 66 BRCA TCGA-AR-A0TR ITSN1 SNP Missense_Mutation 21 35247757 C T 27 74 BRCA TCGA-AR-A0TR PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA TCGA-AR-A0TR MAP4 SNP Silent 3 47956413 C T 23 54 BRCA TCGA-AR-A0TR STAB1 SNP Silent 3 52556668 C T 30 44 BRCA TCGA-AR-A0TR USP53 SNP Missense_Mutation 4 120182931 T A 50 90 BRCA TCGA-AR-A0TR RNF175 SNP Silent 4 154669848 A G 5 50 BRCA TCGA-AR-A0TR ZFP42 SNP Missense_Mutation 4 188924860 C T 25 54 BRCA TCGA-AR-A0TR TUBB4Q SNP Missense_Mutation 4 190905620 C T 19 77 BRCA TCGA-AR-A0TR SERPINB6 SNP Silent 6 2949205 A T 5 11 BRCA TCGA-AR-A0TR RPL7L1 SNP Silent 6 42851236 A T 14 20 BRCA TCGA-AR-A0TR NACAD SNP Silent 7 45123805 C T 28 46 BRCA TCGA-AR-A0TR XPO7 SNP Missense_Mutation 8 21862543 A G 5 85 BRCA TCGA-AR-A0TR FAM129B SNP Missense_Mutation 9 130270454 A T 6 86 BRCA TCGA-AR-A0TS AMPD1 SNP Splice_Site 1 115236070 T A 55 78 BRCA TCGA-AR-A0TS ASH1L SNP Silent 1 155313175 G A 33 44 BRCA TCGA-AR-A0TS USP21 DEL Frame_Shift_Del 1 161134356 T - 57 63 BRCA TCGA-AR-A0TS SELL SNP Missense_Mutation 1 169673765 T C 62 54 BRCA TCGA-AR-A0TS TPR SNP Missense_Mutation 1 186325525 C T 27 79 BRCA TCGA-AR-A0TS PIK3C2B SNP Missense_Mutation 1 204408104 A G 7 91 BRCA TCGA-AR-A0TS RCAN3 SNP Silent 1 24859683 C T 27 41 BRCA TCGA-AR-A0TS ARHGAP29 SNP Missense_Mutation 1 94639535 C A 32 53 BRCA TCGA-AR-A0TS AKR1C3 SNP Missense_Mutation 10 5141532 G T 48 60 BRCA TCGA-AR-A0TS SYT9 SNP Silent 11 7335088 C A 26 70 BRCA TCGA-AR-A0TS PRSS23 INS In_Frame_Ins 11 86519666 - CAGCAG 10 49 BRCA TCGA-AR-A0TS SELPLG SNP Silent 12 109017607 C T 23 19 BRCA TCGA-AR-A0TS SLITRK1 SNP Missense_Mutation 13 84454496 G C 40 51 BRCA TCGA-AR-A0TS HSPA2 SNP Missense_Mutation 14 65007625 G T 39 100 BRCA TCGA-AR-A0TS ERI2 SNP Missense_Mutation 16 20812611 T A 55 72 BRCA TCGA-AR-A0TS TSC2 SNP Silent 16 2136343 C A 26 50 BRCA TCGA-AR-A0TS ERN2 SNP Missense_Mutation 16 23711935 A T 11 58 BRCA TCGA-AR-A0TS CHD9 SNP Missense_Mutation 16 53338403 G C 42 86 BRCA TCGA-AR-A0TS PIGQ SNP Missense_Mutation 16 625917 C A 18 52 BRCA TCGA-AR-A0TS WWP2 SNP Silent 16 69922069 A C 6 44 BRCA TCGA-AR-A0TS AARS SNP Missense_Mutation 16 70296374 C A 19 68 BRCA TCGA-AR-A0TS TP53 SNP Nonsense_Mutation 17 7578257 C A 30 96 BRCA TCGA-AR-A0TS LIPG SNP Missense_Mutation 18 47093896 G C 45 77 BRCA TCGA-AR-A0TS ZNF473 SNP Missense_Mutation 19 50548416 A T 8 47 BRCA TCGA-AR-A0TS NCR1 SNP Silent 19 55417945 G A 45 52 BRCA TCGA-AR-A0TS SMC6 SNP Missense_Mutation 2 17902510 G A 38 90 BRCA TCGA-AR-A0TS CENPO SNP Silent 2 25040582 T A 54 50 BRCA TCGA-AR-A0TS RAB1A SNP Missense_Mutation 2 65315732 C G 32 78 BRCA TCGA-AR-A0TS ADAM33 SNP Silent 20 3649962 G C 33 57 BRCA TCGA-AR-A0TS CDKL5 SNP Missense_Mutation 23 18631363 C A 18 58 BRCA TCGA-AR-A0TS COL6A5 SNP Silent 3 130098667 G A 38 24 BRCA TCGA-AR-A0TS HPS3 SNP Missense_Mutation 3 148875176 A C 11 68 BRCA TCGA-AR-A0TS CENPE SNP Missense_Mutation 4 104098112 T G 52 43 BRCA TCGA-AR-A0TS DCHS2 DEL Frame_Shift_Del 4 155287566 G - 37 95 BRCA TCGA-AR-A0TS ASIC5 SNP Missense_Mutation 4 156764876 G A 45 69 BRCA TCGA-AR-A0TS PCDHB13 SNP Silent 5 140595375 C T 31 51 BRCA TCGA-AR-A0TS SUB1 SNP Silent 5 32601185 C T 20 81 BRCA TCGA-AR-A0TS SERINC1 SNP Missense_Mutation 6 122775305 A G 1 92 BRCA TCGA-AR-A0TS UBR2 SNP Missense_Mutation 6 42629951 G A 45 71 BRCA TCGA-AR-A0TS LOC100289653 SNP Missense_Mutation 6 87607052 G A 37 52 BRCA TCGA-AR-A0TS C8orf31 SNP Missense_Mutation 8 144126108 G C 33 46 BRCA TCGA-AR-A0TS CDCA2 SNP Missense_Mutation 8 25365051 C G 30 49 BRCA TCGA-AR-A0TS RGS20 SNP Missense_Mutation 8 54791869 G A 39 45 BRCA TCGA-AR-A0TS RBM12B SNP Nonsense_Mutation 8 94748065 G A 39 55 BRCA TCGA-AR-A0TS CACNA1B SNP Missense_Mutation 9 140970313 C T 23 70 BRCA TCGA-AR-A0TT AMIGO1 SNP Missense_Mutation 1 110050505 T C 51 51 BRCA TCGA-AR-A0TT RORC SNP Splice_site 1 151804201 C T 22 72 BRCA TCGA-AR-A0TT DARC SNP Missense_Mutation 1 159176056 G T 48 74 BRCA TCGA-AR-A0TT RYR2 SNP Missense_Mutation 1 237947265 A C 5 72 BRCA TCGA-AR-A0TT OR2G3 SNP Silent 1 247769184 G A 38 22 BRCA TCGA-AR-A0TT TRIM63 SNP Missense_Mutation 1 26393958 C T 30 72 BRCA TCGA-AR-A0TT SRSF4 SNP Missense_Mutation 1 29481326 T C 62 88 BRCA TCGA-AR-A0TT ARHGAP21 SNP Missense_Mutation 10 24908483 C A 18 73 BRCA TCGA-AR-A0TT MYST4 SNP Missense_Mutation 10 76735170 G A 45 96 BRCA TCGA-AR-A0TT SLC35F2 DEL Frame_Shift_Del 11 107663404 C - 30 25 BRCA TCGA-AR-A0TT WNT11 SNP Missense_Mutation 11 75902837 G A 39 72 BRCA TCGA-AR-A0TT GPR19 SNP Silent 12 12815194 C T 22 50 BRCA TCGA-AR-A0TT NBEA DEL Frame_Shift_Del 13 35733981 TT - 56 52 BRCA TCGA-AR-A0TT NPAS3 SNP Splice_Site 14 34243738 T C 57 93 BRCA TCGA-AR-A0TT ZC3H7A SNP Missense_Mutation 16 11856531 G A 38 72 BRCA TCGA-AR-A0TT SNP Missense_Mutation 16 28354457 G A 43 52 BRCA TCGA-AR-A0TT N4BP1 SNP Missense_Mutation 16 48595370 C G 32 54 BRCA TCGA-AR-A0TT N4BP1 SNP Missense_Mutation 16 48595699 C G 30 59 BRCA TCGA-AR-A0TT MSLN SNP Missense_Mutation 16 813660 G A 39 55 BRCA TCGA-AR-A0TT GALNS SNP Missense_Mutation 16 88880888 G T 44 64 BRCA TCGA-AR-A0TT MEIS3P1 SNP Missense_Mutation 17 15690462 C T 22 64 BRCA TCGA-AR-A0TT NCOR1 SNP Splice_Site 17 16075115 A G 14 83 BRCA TCGA-AR-A0TT HOXB6 SNP Silent 17 46675234 G A 39 49 BRCA TCGA-AR-A0TT CACNA1G SNP Missense_Mutation 17 48701886 G T 38 96 BRCA TCGA-AR-A0TT SMG8 SNP Missense_Mutation 17 57289786 G A 35 69 BRCA TCGA-AR-A0TT TIMP2 SNP Silent 17 76851797 G A 38 49 BRCA TCGA-AR-A0TT PER1 SNP Missense_Mutation 17 8050807 A G 12 82 BRCA TCGA-AR-A0TT ME2 SNP Missense_Mutation 18 48447486 G C 33 100 BRCA TCGA-AR-A0TT MRPL54 SNP Silent 19 3765204 C T 27 30 BRCA TCGA-AR-A0TT EMC10 SNP Missense_Mutation 19 50983986 C T 31 95 BRCA TCGA-AR-A0TT NLRP13 SNP Silent 19 56423854 G A 40 38 BRCA TCGA-AR-A0TT PKP4 SNP Missense_Mutation 2 159514765 G A 45 83 BRCA TCGA-AR-A0TT ALMS1P SNP Missense_Mutation 2 73901054 G A 41 54 BRCA TCGA-AR-A0TT TBC1D8B SNP Missense_Mutation 23 106069286 A T 11 86 BRCA TCGA-AR-A0TT GPR112 SNP Missense_Mutation 23 135445680 A T 3 48 BRCA TCGA-AR-A0TT PLXNA3 SNP Missense_Mutation 23 153696287 C A 27 59 BRCA TCGA-AR-A0TT KPNA1 SNP Silent 3 122146488 A T 5 71 BRCA TCGA-AR-A0TT NT5DC2 SNP Splice_site 3 52558835 C T 29 50 BRCA TCGA-AR-A0TT LRTM1 SNP Missense_Mutation 3 54959105 G A 44 99 BRCA TCGA-AR-A0TT DDX60L SNP Missense_Mutation 4 169379152 G C 48 23 BRCA TCGA-AR-A0TT EXOC1 SNP Missense_Mutation 4 56765860 T G 57 89 BRCA TCGA-AR-A0TT FAM173B SNP Missense_Mutation 5 10227578 T C 51 35 BRCA TCGA-AR-A0TT PCDHA10 SNP Silent 5 140237004 C T 23 49 BRCA TCGA-AR-A0TT PCDHGA2 SNP Missense_Mutation 5 140720475 T A 50 88 BRCA TCGA-AR-A0TT PDE6A SNP Missense_Mutation 5 149265830 C G 29 74 BRCA TCGA-AR-A0TT NIPAL4 SNP Silent 5 156899386 C T 29 55 BRCA TCGA-AR-A0TT ZSCAN12 SNP Nonsense_Mutation 6 28358993 A C 12 51 BRCA TCGA-AR-A0TT GUCA1A SNP Missense_Mutation 6 42147050 G A 37 66 BRCA TCGA-AR-A0TT OR2A42 SNP Missense_Mutation 7 143929644 G A 40 53 BRCA TCGA-AR-A0TT KIAA0196 SNP Silent 8 126073396 T G 49 49 BRCA TCGA-AR-A0TT SFRP1 SNP Missense_Mutation 8 41166417 C T 26 95 BRCA TCGA-AR-A0TT KCNB2 DEL Frame_Shift_Del 8 73850130 AA - 9 58 BRCA TCGA-AR-A0TT KCNB2 DEL Frame_Shift_Del 8 73850133 AGGGC - 11 66 BRCA TCGA-AR-A0TT BNC2 SNP Missense_Mutation 9 16419369 C T 20 100 BRCA TCGA-AR-A0TU TPR SNP Missense_Mutation 1 186321122 G T 33 74 BRCA TCGA-AR-A0TU IKBKE SNP Missense_Mutation 1 206650162 C T 19 61 BRCA TCGA-AR-A0TU USH2A SNP Missense_Mutation 1 215953193 G A 40 69 BRCA TCGA-AR-A0TU CDC42BPA DEL In_Frame_Del 1 227333330 CTATTCCATTTTGAC - 32 71 BRCA TCGA-AR-A0TU AKT3 SNP Missense_Mutation 1 243727042 G C 41 100 BRCA TCGA-AR-A0TU YTHDF2 SNP Silent 1 29069325 C T 25 57 BRCA TCGA-AR-A0TU EIF3I SNP Missense_Mutation 1 32691906 G A 41 95 BRCA TCGA-AR-A0TU BSDC1 SNP Missense_Mutation 1 32849538 C T 18 99 BRCA TCGA-AR-A0TU EPHA10 SNP Silent 1 38185168 T G 55 76 BRCA TCGA-AR-A0TU CAP1 SNP Missense_Mutation 1 40525103 C G 23 48 BRCA TCGA-AR-A0TU SSBP3 SNP Silent 1 54722839 G A 40 49 BRCA TCGA-AR-A0TU IDI1 SNP Missense_Mutation 10 1094816 C T 23 43 BRCA TCGA-AR-A0TU BICC1 SNP Missense_Mutation 10 60553276 G A 45 76 BRCA TCGA-AR-A0TU IFIT5 SNP Missense_Mutation 10 91177984 A G 10 66 BRCA TCGA-AR-A0TU MMS19 SNP Missense_Mutation 10 99220677 G A 36 94 BRCA TCGA-AR-A0TU C11orf52 SNP Missense_Mutation 11 111789707 G C 39 44 BRCA TCGA-AR-A0TU DSCAML1 SNP Missense_Mutation 11 117376295 C T 31 99 BRCA TCGA-AR-A0TU CXCR5 SNP Splice_site 11 118765373 G T 44 53 BRCA TCGA-AR-A0TU KCNJ8 SNP Missense_Mutation 12 21919255 C T 27 86 BRCA TCGA-AR-A0TU VDR SNP Silent 12 48240182 C T 29 54 BRCA TCGA-AR-A0TU SUOX SNP Silent 12 56398436 G A 35 49 BRCA TCGA-AR-A0TU ANO2 SNP Missense_Mutation 12 5674793 G T 44 54 BRCA TCGA-AR-A0TU KCNC2 SNP Missense_Mutation 12 75441951 C T 29 82 BRCA TCGA-AR-A0TU CRIP2 SNP Missense_Mutation 14 105945815 C G 24 88 BRCA TCGA-AR-A0TU CNIH SNP Splice_Site 14 54896977 A C 14 89 BRCA TCGA-AR-A0TU C14orf37 DEL Frame_Shift_Del 14 58604819 CTCCCGTA - 32 57 BRCA TCGA-AR-A0TU PROX2 SNP Missense_Mutation 14 75329523 G T 47 64 BRCA TCGA-AR-A0TU SERPINA4 SNP Missense_Mutation 14 95029869 T A 56 53 BRCA TCGA-AR-A0TU HERC2 SNP Silent 15 28446656 T A 54 53 BRCA TCGA-AR-A0TU VPS18 SNP Missense_Mutation 15 41195138 C T 27 73 BRCA TCGA-AR-A0TU MAPKBP1 SNP Silent 15 42113197 G C 38 29 BRCA TCGA-AR-A0TU VPS13C SNP Missense_Mutation 15 62172909 G C 47 73 BRCA TCGA-AR-A0TU GRIN2A SNP Nonsense_Mutation 16 9857875 C A 32 94 BRCA TCGA-AR-A0TU ACCN1 SNP Missense_Mutation 17 31415915 C T 22 96 BRCA TCGA-AR-A0TU KRT14 SNP Missense_Mutation 17 39740663 T C 49 50 BRCA TCGA-AR-A0TU CD300A SNP Missense_Mutation 17 72469868 G C 43 50 BRCA TCGA-AR-A0TU RNF213 SNP Silent 17 78326840 G T 38 42 BRCA TCGA-AR-A0TU LAMA3 SNP Splice_Site 18 21481288 G T 44 86 BRCA TCGA-AR-A0TU KIAA1683 SNP Missense_Mutation 19 18377840 C A 24 67 BRCA TCGA-AR-A0TU ZNF614 SNP Translation_Start_Site 19 52531614 G A 40 42 BRCA TCGA-AR-A0TU ZIM3 SNP Missense_Mutation 19 57649909 G C 34 53 BRCA TCGA-AR-A0TU ACSBG2 SNP Silent 19 6183236 C T 28 68 BRCA TCGA-AR-A0TU SCN1A DEL Frame_Shift_Del 2 166848260 G - 47 100 BRCA TCGA-AR-A0TU ALS2 SNP Silent 2 202590162 T C 62 61 BRCA TCGA-AR-A0TU ADD2 SNP Nonsense_Mutation 2 70931513 G A 38 58 BRCA TCGA-AR-A0TU DOK1 SNP Missense_Mutation 2 74783820 A T 11 52 BRCA TCGA-AR-A0TU KANSL3 SNP Silent 2 97267392 G A 35 46 BRCA TCGA-AR-A0TU FER1L5 SNP Missense_Mutation 2 97327959 C A 18 29 BRCA TCGA-AR-A0TU HNF4A SNP Missense_Mutation 20 43036067 C G 23 58 BRCA TCGA-AR-A0TU NF2 SNP Nonsense_Mutation 22 30057312 C A 31 87 BRCA TCGA-AR-A0TU RASD2 SNP Missense_Mutation 22 35948015 A C 14 90 BRCA TCGA-AR-A0TU HDAC10 SNP Missense_Mutation 22 50688545 C T 28 67 BRCA TCGA-AR-A0TU IL1RAPL2 SNP Missense_Mutation 23 104728375 G T 34 83 BRCA TCGA-AR-A0TU MAGEC3 SNP Silent 23 140969432 A G 13 34 BRCA TCGA-AR-A0TU MAMLD1 SNP Silent 23 149639246 C A 28 49 BRCA TCGA-AR-A0TU PASD1 SNP Missense_Mutation 23 150844587 A G 11 60 BRCA TCGA-AR-A0TU F8 SNP Silent 23 154159895 A G 3 61 BRCA TCGA-AR-A0TU F8 SNP Missense_Mutation 23 154194287 G C 33 53 BRCA TCGA-AR-A0TU FAAH2 SNP Silent 23 57358158 T C 57 59 BRCA TCGA-AR-A0TU AWAT1 SNP Silent 23 69459753 C T 30 52 BRCA TCGA-AR-A0TU SLC7A3 SNP Silent 23 70149842 C T 19 52 BRCA TCGA-AR-A0TU ZNF711 SNP Missense_Mutation 23 84526405 C A 17 64 BRCA TCGA-AR-A0TU PVRL3 SNP Missense_Mutation 3 110852796 G A 45 90 BRCA TCGA-AR-A0TU PDIA5 SNP Silent 3 122811242 G A 47 63 BRCA TCGA-AR-A0TU PRKCI SNP Missense_Mutation 3 170015134 G C 46 84 BRCA TCGA-AR-A0TU NKTR SNP Missense_Mutation 3 42678448 C A 24 50 BRCA TCGA-AR-A0TU ROBO1 SNP Missense_Mutation 3 78734951 C A 32 78 BRCA TCGA-AR-A0TU CCKAR SNP Silent 4 26491054 G A 38 55 BRCA TCGA-AR-A0TU SCFD2 SNP Silent 4 54231620 A T 5 49 BRCA TCGA-AR-A0TU KIAA0232 SNP Missense_Mutation 4 6863899 G C 34 86 BRCA TCGA-AR-A0TU MAN2A1 SNP Missense_Mutation 5 109200756 A G 4 62 BRCA TCGA-AR-A0TU ZNF300 INS Frame_Shift_Ins 5 150275563 - C 62 51 BRCA TCGA-AR-A0TU ADRA1B DEL In_Frame_Del 5 159344505 CCGAAGAACCCTTCTATGCCCTCTTCT - 18 99 BRCA TCGA-AR-A0TU SPEF2 SNP Missense_Mutation 5 35727923 G C 45 59 BRCA TCGA-AR-A0TU HDAC2 DEL Frame_Shift_Del 6 114277211 TAACG - 61 92 BRCA TCGA-AR-A0TU VNN1 SNP Missense_Mutation 6 133032939 C A 21 65 BRCA TCGA-AR-A0TU CNKSR3 SNP Missense_Mutation 6 154763259 T A 51 90 BRCA TCGA-AR-A0TU NOX3 SNP Silent 6 155750119 C T 27 41 BRCA TCGA-AR-A0TU DEFB113 SNP Missense_Mutation 6 49937333 C G 32 71 BRCA TCGA-AR-A0TU MET DEL In_Frame_Del 7 116340214 GAT - 37 75 BRCA TCGA-AR-A0TU MET DEL In_Frame_Del 7 116340219 GCC - 46 99 BRCA TCGA-AR-A0TU MET INS Frame_Shift_Ins 7 116340222 - T 8 57 BRCA TCGA-AR-A0TU ETV1 SNP Missense_Mutation 7 13946060 C G 29 100 BRCA TCGA-AR-A0TU PDIA4 DEL In_Frame_Del 7 148709414 TTCTCA - 56 92 BRCA TCGA-AR-A0TU HOXA4 DEL Frame_Shift_Del 7 27168912 TTTGTGC - 60 62 BRCA TCGA-AR-A0TU DYNC1I1 SNP Missense_Mutation 7 95726876 G A 41 93 BRCA TCGA-AR-A0TU SLC25A13 SNP Missense_Mutation 7 95818665 G A 40 63 BRCA TCGA-AR-A0TU ODF1 DEL Frame_Shift_Del 8 103572897 TG - 55 60 BRCA TCGA-AR-A0TU UBE2R2 SNP Missense_Mutation 9 33917121 C G 17 71 BRCA TCGA-AR-A0TU TLN1 SNP Missense_Mutation 9 35711758 G C 34 86 BRCA TCGA-AR-A0TU TRPM6 SNP Missense_Mutation 9 77435320 T G 54 78 BRCA TCGA-AR-A0TU PRUNE2 SNP Missense_Mutation 9 79320287 G C 48 52 BRCA TCGA-AR-A0TV GJA5 SNP Missense_Mutation 1 147230643 C T 32 56 BRCA TCGA-AR-A0TV GATAD2B SNP Missense_Mutation 1 153800546 C T 30 77 BRCA TCGA-AR-A0TV TDRD10 SNP Nonsense_Mutation 1 154516476 C T 23 52 BRCA TCGA-AR-A0TV ZBTB17 SNP Missense_Mutation 1 16272281 A C 11 51 BRCA TCGA-AR-A0TV MAEL SNP Missense_Mutation 1 166962031 C T 32 84 BRCA TCGA-AR-A0TV TNR SNP Silent 1 175372322 C T 26 48 BRCA TCGA-AR-A0TV FAM5C SNP Missense_Mutation 1 190250765 G A 44 97 BRCA TCGA-AR-A0TV LEPR SNP Missense_Mutation 1 66098839 C T 19 48 BRCA TCGA-AR-A0TV CDHR1 SNP Missense_Mutation 10 85961584 G A 40 44 BRCA TCGA-AR-A0TV SLIT1 SNP Silent 10 98807512 C T 21 63 BRCA TCGA-AR-A0TV ABCG4 SNP Silent 11 119027378 G A 39 28 BRCA TCGA-AR-A0TV KIF18A SNP Missense_Mutation 11 28042770 T C 49 74 BRCA TCGA-AR-A0TV DEAF1 INS Frame_Shift_Ins 11 654011 - A 25 88 BRCA TCGA-AR-A0TV FAT3 SNP Missense_Mutation 11 92592359 C G 17 66 BRCA TCGA-AR-A0TV HEPHL1 SNP Missense_Mutation 11 93800913 C A 17 68 BRCA TCGA-AR-A0TV CHST11 SNP Missense_Mutation 12 105150997 G A 38 66 BRCA TCGA-AR-A0TV WDR66 SNP Missense_Mutation 12 122361879 A G 6 40 BRCA TCGA-AR-A0TV POU6F1 SNP Missense_Mutation 12 51586227 C T 19 51 BRCA TCGA-AR-A0TV LRRC16B SNP Missense_Mutation 14 24527046 A C 6 82 BRCA TCGA-AR-A0TV TGM1 SNP Missense_Mutation 14 24728371 C G 22 80 BRCA TCGA-AR-A0TV ARID4A SNP Missense_Mutation 14 58811468 A G 3 91 BRCA TCGA-AR-A0TV MAX SNP Missense_Mutation 14 65543344 C T 25 75 BRCA TCGA-AR-A0TV ZNF48 SNP Missense_Mutation 16 30410052 G A 37 59 BRCA TCGA-AR-A0TV ADAMTS18 SNP Missense_Mutation 16 77323239 A C 11 65 BRCA TCGA-AR-A0TV NCOR1 SNP Missense_Mutation 17 15978874 T C 64 89 BRCA TCGA-AR-A0TV ULK2 SNP Missense_Mutation 17 19700794 G A 43 96 BRCA TCGA-AR-A0TV KCNJ12 SNP Missense_Mutation 17 21318946 T A 60 91 BRCA TCGA-AR-A0TV HEATR6 SNP Missense_Mutation 17 58124731 G C 33 85 BRCA TCGA-AR-A0TV KIF19 SNP Silent 17 72350488 G A 38 23 BRCA TCGA-AR-A0TV TP53 SNP Missense_Mutation 17 7578203 C T 17 96 BRCA TCGA-AR-A0TV GCGR SNP Splice_Site 17 79769688 T G 59 89 BRCA TCGA-AR-A0TV OR10H2 SNP Missense_Mutation 19 15839451 G A 40 51 BRCA TCGA-AR-A0TV ZNF43 SNP Missense_Mutation 19 21992605 C T 17 50 BRCA TCGA-AR-A0TV STXBP2 SNP Silent 19 7711185 C G 24 64 BRCA TCGA-AR-A0TV CLEC4G SNP Silent 19 7794763 G A 42 44 BRCA TCGA-AR-A0TV NEB SNP Missense_Mutation 2 152409230 G T 44 98 BRCA TCGA-AR-A0TV NBEAL1 SNP Missense_Mutation 2 204016280 A G 8 86 BRCA TCGA-AR-A0TV RAPH1 SNP Missense_Mutation 2 204305920 C T 19 63 BRCA TCGA-AR-A0TV AP1S3 SNP Missense_Mutation 2 224642566 G T 45 85 BRCA TCGA-AR-A0TV ALPI SNP Missense_Mutation 2 233323663 C T 27 82 BRCA TCGA-AR-A0TV C2orf71 SNP Missense_Mutation 2 29294240 G A 41 66 BRCA TCGA-AR-A0TV SLC4A5 DEL Frame_Shift_Del 2 74454651 A - 7 52 BRCA TCGA-AR-A0TV MYH7B SNP Missense_Mutation 20 33575438 T C 57 87 BRCA TCGA-AR-A0TV MYH7B SNP Missense_Mutation 20 33580963 G A 42 82 BRCA TCGA-AR-A0TV SCARF2 SNP Silent 22 20784108 C T 19 48 BRCA TCGA-AR-A0TV MAPK8IP2 SNP Missense_Mutation 22 51044277 T G 59 87 BRCA TCGA-AR-A0TV FAM48B1 SNP Missense_Mutation 23 24381686 A C 1 49 BRCA TCGA-AR-A0TV EFHC2 SNP Missense_Mutation 23 44091738 T A 62 51 BRCA TCGA-AR-A0TV SYN1 SNP Missense_Mutation 23 47464683 G T 34 70 BRCA TCGA-AR-A0TV MAGIX SNP Silent 23 49019251 C T 23 47 BRCA TCGA-AR-A0TV KIF4A SNP Missense_Mutation 23 69639547 G A 37 77 BRCA TCGA-AR-A0TV WDR52 SNP Missense_Mutation 3 113128161 C G 29 69 BRCA TCGA-AR-A0TV EIF4A2 SNP Missense_Mutation 3 186502374 G A 45 90 BRCA TCGA-AR-A0TV MUC4 SNP Silent 3 195511506 T G 55 50 BRCA TCGA-AR-A0TV UBP1 DEL In_Frame_Del 3 33434069 AAT - 9 91 BRCA TCGA-AR-A0TV PTPRG SNP Missense_Mutation 3 61989043 G C 37 86 BRCA TCGA-AR-A0TV KIAA1109 SNP Silent 4 123202754 T A 61 55 BRCA TCGA-AR-A0TV CLCN3 SNP Missense_Mutation 4 170634389 T G 50 91 BRCA TCGA-AR-A0TV EPB41L4A SNP Missense_Mutation 5 111643142 C T 19 48 BRCA TCGA-AR-A0TV PCDH1 SNP Nonsense_Mutation 5 141243846 G A 47 67 BRCA TCGA-AR-A0TV FBXO38 SNP Silent 5 147793787 A T 7 49 BRCA TCGA-AR-A0TV CDH10 SNP Missense_Mutation 5 24593491 A T 1 54 BRCA TCGA-AR-A0TV MEF2C SNP Missense_Mutation 5 88057005 C A 17 69 BRCA TCGA-AR-A0TV TUBB SNP Silent 6 30691970 C T 32 49 BRCA TCGA-AR-A0TV KHDRBS2 SNP Missense_Mutation 6 62611156 G T 41 70 BRCA TCGA-AR-A0TV EGFR SNP Missense_Mutation 7 55229270 G C 46 97 BRCA TCGA-AR-A0TV MRPS17 SNP Missense_Mutation 7 55990862 T G 55 68 BRCA TCGA-AR-A0TV OPRK1 SNP Missense_Mutation 8 54142245 C T 19 100 BRCA TCGA-AR-A0TV ZC2HC1A SNP Silent 8 79601467 A G 4 54 BRCA TCGA-AR-A0TV DCAF4L2 SNP Missense_Mutation 8 88885211 G A 38 50 BRCA TCGA-AR-A0TV NECAB1 SNP Missense_Mutation 8 91836960 C A 30 94 BRCA TCGA-AR-A0TV NANS SNP Nonsense_Mutation 9 100819126 G A 43 97 BRCA TCGA-AR-A0TW CD1A SNP Silent 1 158225118 C T 19 46 BRCA TCGA-AR-A0TW ZNF648 SNP Missense_Mutation 1 182025629 C A 17 87 BRCA TCGA-AR-A0TW CDC42BPA SNP Nonsense_Mutation 1 227235647 G C 45 69 BRCA TCGA-AR-A0TW DOCK7 SNP Missense_Mutation 1 62979452 A C 11 92 BRCA TCGA-AR-A0TW SLC44A5 SNP Splice_Site 1 75683550 C T 19 99 BRCA TCGA-AR-A0TW GATA3 INS Frame_Shift_Ins 10 8115853 - G 51 79 BRCA TCGA-AR-A0TW API5 SNP Missense_Mutation 11 43352111 C G 29 69 BRCA TCGA-AR-A0TW ENSG00000181943 SNP Missense_Mutation 11 55258848 A G 8 70 BRCA TCGA-AR-A0TW TRIM6 SNP Silent 11 5626735 C T 28 64 BRCA TCGA-AR-A0TW FAT3 SNP Silent 11 92533961 T C 51 56 BRCA TCGA-AR-A0TW GLT1D1 SNP Missense_Mutation 12 129373285 G T 34 83 BRCA TCGA-AR-A0TW ENSG00000230291 SNP Missense_Mutation 12 80496825 T C 51 64 BRCA TCGA-AR-A0TW TMCO3 SNP Missense_Mutation 13 114202762 C T 31 64 BRCA TCGA-AR-A0TW SLC25A21 SNP Missense_Mutation 14 37180577 G C 48 64 BRCA TCGA-AR-A0TW ADAM21 SNP Missense_Mutation 14 70924295 G A 39 49 BRCA TCGA-AR-A0TW GRIN2A SNP Missense_Mutation 16 10031859 C A 23 75 BRCA TCGA-AR-A0TW ZNF434 SNP Missense_Mutation 16 3432988 T C 64 54 BRCA TCGA-AR-A0TW CNOT1 SNP Silent 16 58610448 T C 63 42 BRCA TCGA-AR-A0TW NCOR1 SNP Nonsense_Mutation 17 15965036 T A 54 54 BRCA TCGA-AR-A0TW TTLL6 SNP Missense_Mutation 17 46878982 C T 23 91 BRCA TCGA-AR-A0TW EVPL SNP Silent 17 74004924 G A 47 41 BRCA TCGA-AR-A0TW ZNF521 SNP Missense_Mutation 18 22805247 C T 19 83 BRCA TCGA-AR-A0TW KLK7 SNP Silent 19 51480873 G C 42 56 BRCA TCGA-AR-A0TW ZNF160 SNP Missense_Mutation 19 53572793 G A 37 51 BRCA TCGA-AR-A0TW CAMSAP3 SNP Nonsense_Mutation 19 7682695 C T 21 97 BRCA TCGA-AR-A0TW ACOXL SNP Missense_Mutation 2 111806831 G T 48 76 BRCA TCGA-AR-A0TW HSPD1 SNP Missense_Mutation 2 198361901 C A 32 72 BRCA TCGA-AR-A0TW STK11IP SNP Missense_Mutation 2 220473425 G T 38 59 BRCA TCGA-AR-A0TW CPNE1 SNP Splice_Site 20 34220172 T C 53 53 BRCA TCGA-AR-A0TW LAMA5 SNP Missense_Mutation 20 60902626 C T 26 81 BRCA TCGA-AR-A0TW YTHDF1 SNP Silent 20 61833786 G A 45 55 BRCA TCGA-AR-A0TW YTHDF1 SNP Silent 20 61834026 G A 48 55 BRCA TCGA-AR-A0TW TRIOBP SNP Missense_Mutation 22 38120742 C T 19 50 BRCA TCGA-AR-A0TW GPR112 SNP Missense_Mutation 23 135445675 G T 34 46 BRCA TCGA-AR-A0TW GDI1 SNP Missense_Mutation 23 153668377 G C 43 91 BRCA TCGA-AR-A0TW DKC1 SNP Missense_Mutation 23 153993215 A G 9 77 BRCA TCGA-AR-A0TW CDKL5 SNP Silent 23 18593511 T G 61 59 BRCA TCGA-AR-A0TW SPICE1 SNP Silent 3 113176140 G A 41 40 BRCA TCGA-AR-A0TW DALRD3 SNP Missense_Mutation 3 49053694 C T 19 80 BRCA TCGA-AR-A0TW MTMR14 SNP Nonsense_Mutation 3 9730630 C T 19 58 BRCA TCGA-AR-A0TW IL17RC SNP Missense_Mutation 3 9974346 C A 27 46 BRCA TCGA-AR-A0TW WDR17 SNP Silent 4 177077232 G T 43 97 BRCA TCGA-AR-A0TW RFC1 SNP Silent 4 39297290 C T 19 48 BRCA TCGA-AR-A0TW GK2 SNP Missense_Mutation 4 80328163 C T 32 74 BRCA TCGA-AR-A0TW BRD8 SNP Missense_Mutation 5 137476527 C T 23 55 BRCA TCGA-AR-A0TW PCDHA13 SNP Nonsense_Mutation 5 140262304 C T 31 50 BRCA TCGA-AR-A0TW GRIA1 SNP Missense_Mutation 5 153065885 G A 37 78 BRCA TCGA-AR-A0TW C5orf25 SNP Missense_Mutation 5 175763760 C T 27 77 BRCA TCGA-AR-A0TW PKHD1 SNP Missense_Mutation 6 51524412 C A 32 64 BRCA TCGA-AR-A0TW SAMD9 SNP Missense_Mutation 7 92732742 G T 44 44 BRCA TCGA-AR-A0TW DPYSL2 SNP Missense_Mutation 8 26484767 G A 38 100 BRCA TCGA-AR-A0TW PXDNL SNP Silent 8 52287216 C A 21 56 BRCA TCGA-AR-A0TX CASZ1 SNP Silent 1 10720544 G A 41 69 BRCA TCGA-AR-A0TX GPSM2 SNP Missense_Mutation 1 109466650 C A 17 56 BRCA TCGA-AR-A0TX PTPN22 SNP Missense_Mutation 1 114380586 G C 33 62 BRCA TCGA-AR-A0TX PTPN22 SNP Missense_Mutation 1 114380881 G C 33 49 BRCA TCGA-AR-A0TX PTCHD2 SNP Missense_Mutation 1 11584097 G A 45 78 BRCA TCGA-AR-A0TX NUP210L SNP Missense_Mutation 1 154030634 G A 47 83 BRCA TCGA-AR-A0TX GON4L SNP Missense_Mutation 1 155721824 C A 26 55 BRCA TCGA-AR-A0TX TMEM82 SNP Missense_Mutation 1 16074093 C T 31 58 BRCA TCGA-AR-A0TX SPEN SNP Nonsense_Mutation 1 16260482 G T 33 66 BRCA TCGA-AR-A0TX HSD17B7 SNP Silent 1 162769553 C G 30 40 BRCA TCGA-AR-A0TX NCF2 SNP Silent 1 183559438 G C 33 50 BRCA TCGA-AR-A0TX UBR4 SNP Missense_Mutation 1 19464532 C T 32 96 BRCA TCGA-AR-A0TX ADORA1 SNP Silent 1 203134926 G A 33 54 BRCA TCGA-AR-A0TX NUAK2 SNP Missense_Mutation 1 205273335 G T 41 83 BRCA TCGA-AR-A0TX OBSCN SNP Silent 1 228467538 C T 29 42 BRCA TCGA-AR-A0TX OR2T34 SNP Silent 1 248737567 G A 45 53 BRCA TCGA-AR-A0TX ZMYM4 SNP Missense_Mutation 1 35835996 C G 29 85 BRCA TCGA-AR-A0TX FOXJ3 SNP Missense_Mutation 1 42654583 C G 29 80 BRCA TCGA-AR-A0TX CYP4Z1 SNP Nonsense_Mutation 1 47581263 C T 29 23 BRCA TCGA-AR-A0TX ROR1 SNP Nonsense_Mutation 1 64624667 C G 29 69 BRCA TCGA-AR-A0TX LEPR SNP Silent 1 66085699 C T 29 53 BRCA TCGA-AR-A0TX LRRC7 SNP Missense_Mutation 1 70291445 C G 30 92 BRCA TCGA-AR-A0TX EVI5 SNP Missense_Mutation 1 93170218 G A 45 97 BRCA TCGA-AR-A0TX CLSTN1 SNP Silent 1 9809658 G A 39 31 BRCA TCGA-AR-A0TX ABCC2 SNP Missense_Mutation 10 101606856 G A 37 74 BRCA TCGA-AR-A0TX C10orf76 SNP Silent 10 103699622 G A 45 65 BRCA TCGA-AR-A0TX TAF5 SNP Silent 10 105143101 C T 19 66 BRCA TCGA-AR-A0TX DCLRE1C SNP Missense_Mutation 10 14977484 C G 30 100 BRCA TCGA-AR-A0TX YME1L1 SNP Missense_Mutation 10 27412521 C G 29 100 BRCA TCGA-AR-A0TX ZFAND4 SNP Missense_Mutation 10 46143787 T C 50 54 BRCA TCGA-AR-A0TX WDFY4 SNP Missense_Mutation 10 50030439 C A 29 82 BRCA TCGA-AR-A0TX FAM13C SNP Nonsense_Mutation 10 61029863 G T 45 49 BRCA TCGA-AR-A0TX ANK3 SNP Missense_Mutation 10 62038849 C G 29 100 BRCA TCGA-AR-A0TX FAM35A SNP Missense_Mutation 10 88946909 G A 33 64 BRCA TCGA-AR-A0TX DYNC2H1 SNP Missense_Mutation 11 103156999 C G 32 68 BRCA TCGA-AR-A0TX RDX SNP Missense_Mutation 11 110104054 C G 29 86 BRCA TCGA-AR-A0TX MLL SNP Nonsense_Mutation 11 118344572 C T 29 73 BRCA TCGA-AR-A0TX HEPACAM SNP Silent 11 124805830 G A 33 63 BRCA TCGA-AR-A0TX HYLS1 SNP Missense_Mutation 11 125769890 G C 33 53 BRCA TCGA-AR-A0TX USH1C SNP Missense_Mutation 11 17531162 G A 33 88 BRCA TCGA-AR-A0TX RIC8A SNP Nonsense_Mutation 11 209437 G T 41 70 BRCA TCGA-AR-A0TX LRP4 SNP Missense_Mutation 11 46893148 C G 32 69 BRCA TCGA-AR-A0TX C11orf49 DEL Frame_Shift_Del 11 47178576 T - 52 85 BRCA TCGA-AR-A0TX SLC39A13 SNP Silent 11 47434989 C G 29 61 BRCA TCGA-AR-A0TX TRIM49B SNP Missense_Mutation 11 49055873 G A 41 41 BRCA TCGA-AR-A0TX OR5W2 SNP Silent 11 55681414 G A 45 39 BRCA TCGA-AR-A0TX STX3 SNP Missense_Mutation 11 59554516 G A 41 93 BRCA TCGA-AR-A0TX STX3 SNP Silent 11 59554572 C G 32 47 BRCA TCGA-AR-A0TX PLAC1L SNP Missense_Mutation 11 59814505 G A 33 58 BRCA TCGA-AR-A0TX DDB1 SNP Missense_Mutation 11 61099077 G A 37 73 BRCA TCGA-AR-A0TX FAM160A2 SNP Missense_Mutation 11 6232761 G A 45 77 BRCA TCGA-AR-A0TX RTN3 SNP Nonsense_Mutation 11 63486546 C A 29 60 BRCA TCGA-AR-A0TX KLC2 SNP Missense_Mutation 11 66026285 G A 41 92 BRCA TCGA-AR-A0TX DCHS1 SNP Missense_Mutation 11 6661191 C T 32 98 BRCA TCGA-AR-A0TX CHCHD8 SNP Missense_Mutation 11 73584201 C T 30 66 BRCA TCGA-AR-A0TX CEND1 SNP Silent 11 788469 C T 29 31 BRCA TCGA-AR-A0TX PRSS23 SNP Missense_Mutation 11 86519317 C T 29 80 BRCA TCGA-AR-A0TX GPR83 SNP Nonsense_Mutation 11 94129617 G C 45 99 BRCA TCGA-AR-A0TX SLC24A6 SNP Silent 12 113754439 G A 33 48 BRCA TCGA-AR-A0TX UNC119B SNP Missense_Mutation 12 121151105 C G 32 70 BRCA TCGA-AR-A0TX KNTC1 SNP Missense_Mutation 12 123069500 G A 33 69 BRCA TCGA-AR-A0TX DNAH10 SNP Silent 12 124362321 G A 45 58 BRCA TCGA-AR-A0TX EPS8 DEL Frame_Shift_Del 12 15774268 C - 29 92 BRCA TCGA-AR-A0TX EPS8 SNP Missense_Mutation 12 15774271 C T 29 92 BRCA TCGA-AR-A0TX PIK3C2G SNP Missense_Mutation 12 18573885 C G 29 76 BRCA TCGA-AR-A0TX ABCC9 SNP Missense_Mutation 12 22086720 C G 32 78 BRCA TCGA-AR-A0TX FGD4 SNP Silent 12 32791666 G A 33 75 BRCA TCGA-AR-A0TX ARID2 SNP Nonsense_Mutation 12 46245928 C G 29 61 BRCA TCGA-AR-A0TX RDH5 SNP Silent 12 56118164 G A 45 64 BRCA TCGA-AR-A0TX ERBB3 SNP Missense_Mutation 12 56487147 G C 45 71 BRCA TCGA-AR-A0TX ESYT1 SNP Missense_Mutation 12 56526236 G A 37 54 BRCA TCGA-AR-A0TX LRIG3 SNP Missense_Mutation 12 59274492 C T 31 100 BRCA TCGA-AR-A0TX B4GALNT3 SNP Silent 12 663141 G A 41 76 BRCA TCGA-AR-A0TX ZFC3H1 SNP Missense_Mutation 12 72026676 T C 50 67 BRCA TCGA-AR-A0TX TBC1D15 SNP Missense_Mutation 12 72307641 C G 32 63 BRCA TCGA-AR-A0TX GAS6 SNP Silent 13 114529991 G A 37 51 BRCA TCGA-AR-A0TX N6AMT2 SNP Missense_Mutation 13 21331700 G C 33 69 BRCA TCGA-AR-A0TX CENPJ SNP Missense_Mutation 13 25459796 C T 31 50 BRCA TCGA-AR-A0TX NDFIP2 SNP Missense_Mutation 13 80125187 C G 32 63 BRCA TCGA-AR-A0TX METTL17 SNP Missense_Mutation 14 21460707 G A 45 77 BRCA TCGA-AR-A0TX FLJ10357 SNP Silent 14 21551001 C T 29 62 BRCA TCGA-AR-A0TX SALL2 SNP Silent 14 21991732 G A 41 51 BRCA TCGA-AR-A0TX OR4E2 SNP Silent 14 22133492 C T 32 61 BRCA TCGA-AR-A0TX PPP2R3C SNP Missense_Mutation 14 35554936 G C 33 72 BRCA TCGA-AR-A0TX PPP2R3C SNP Missense_Mutation 14 35568480 G C 33 75 BRCA TCGA-AR-A0TX SYNE2 SNP Missense_Mutation 14 64496655 T A 62 53 BRCA TCGA-AR-A0TX SYNE2 SNP Missense_Mutation 14 64630264 G A 41 72 BRCA TCGA-AR-A0TX ACOT4 SNP Missense_Mutation 14 74062026 G C 33 82 BRCA TCGA-AR-A0TX NRXN3 SNP Missense_Mutation 14 79270156 G A 47 79 BRCA TCGA-AR-A0TX CEP128 SNP Nonsense_Mutation 14 80971345 C A 30 63 BRCA TCGA-AR-A0TX FOXN3 SNP Missense_Mutation 14 89629149 G A 45 77 BRCA TCGA-AR-A0TX FAM189A1 SNP Missense_Mutation 15 29415586 C G 31 51 BRCA TCGA-AR-A0TX ELL3 SNP Missense_Mutation 15 44068711 C T 31 74 BRCA TCGA-AR-A0TX B2M SNP Missense_Mutation 15 45003751 C T 31 49 BRCA TCGA-AR-A0TX DTWD1 SNP Missense_Mutation 15 49935542 G C 45 79 BRCA TCGA-AR-A0TX PLEKHO2 SNP Missense_Mutation 15 65157503 G A 45 58 BRCA TCGA-AR-A0TX NEO1 SNP Missense_Mutation 15 73562365 G A 45 100 BRCA TCGA-AR-A0TX BLM SNP Missense_Mutation 15 91352454 C T 29 69 BRCA TCGA-AR-A0TX ATF7IP2 SNP Missense_Mutation 16 10567815 G C 45 53 BRCA TCGA-AR-A0TX SNX29 SNP Silent 16 12155475 C T 29 61 BRCA TCGA-AR-A0TX POLR3E SNP Nonsense_Mutation 16 22337444 C T 29 57 BRCA TCGA-AR-A0TX CDR2 SNP Missense_Mutation 16 22358885 C T 32 68 BRCA TCGA-AR-A0TX C16orf79 SNP Silent 16 2260649 C T 29 65 BRCA TCGA-AR-A0TX SCNN1G SNP Silent 16 23200836 C T 32 62 BRCA TCGA-AR-A0TX RABEP2 SNP Missense_Mutation 16 28931193 C G 29 92 BRCA TCGA-AR-A0TX ZNF597 SNP Missense_Mutation 16 3486428 G A 40 42 BRCA TCGA-AR-A0TX GNAO1 SNP Missense_Mutation 16 56368657 G A 41 100 BRCA TCGA-AR-A0TX HYDIN SNP Missense_Mutation 16 70884449 C T 31 60 BRCA TCGA-AR-A0TX ZNF821 SNP Missense_Mutation 16 71894091 C G 30 100 BRCA TCGA-AR-A0TX ZNF821 SNP Silent 16 71895828 C T 29 68 BRCA TCGA-AR-A0TX TUBB3 SNP Missense_Mutation 16 90001832 G C 41 97 BRCA TCGA-AR-A0TX MYH1 SNP Missense_Mutation 17 10404042 G C 33 62 BRCA TCGA-AR-A0TX SLFN11 SNP Missense_Mutation 17 33690742 C G 32 46 BRCA TCGA-AR-A0TX RASL10B SNP Missense_Mutation 17 34067512 G A 45 97 BRCA TCGA-AR-A0TX KRTAP4-2 SNP Missense_Mutation 17 39334385 G C 33 58 BRCA TCGA-AR-A0TX HAP1 SNP Missense_Mutation 17 39887784 C T 29 53 BRCA TCGA-AR-A0TX CCDC47 SNP Nonsense_Mutation 17 61838664 G A 47 99 BRCA TCGA-AR-A0TX DDX42 SNP Missense_Mutation 17 61895420 C T 31 65 BRCA TCGA-AR-A0TX SOX9 SNP Splice_site 17 70120527 G C 45 61 BRCA TCGA-AR-A0TX TP53 SNP Missense_Mutation 17 7578235 T C 49 76 BRCA TCGA-AR-A0TX TNRC6C SNP Missense_Mutation 17 76071354 G C 45 99 BRCA TCGA-AR-A0TX KDM6B SNP Missense_Mutation 17 7754985 G A 41 98 BRCA TCGA-AR-A0TX LRRC45 SNP Missense_Mutation 17 79986381 G A 37 75 BRCA TCGA-AR-A0TX RFNG SNP Silent 17 80007814 G C 45 53 BRCA TCGA-AR-A0TX FAM38B SNP Missense_Mutation 18 10770164 G C 33 70 BRCA TCGA-AR-A0TX POTEC SNP Missense_Mutation 18 14538183 C T 31 57 BRCA TCGA-AR-A0TX SMCHD1 SNP Missense_Mutation 18 2700630 G A 37 95 BRCA TCGA-AR-A0TX GALNT1 SNP Splice_site 18 33289733 G C 45 71 BRCA TCGA-AR-A0TX WDR7 SNP Nonsense_Mutation 18 54424178 C G 29 100 BRCA TCGA-AR-A0TX DOK6 SNP Missense_Mutation 18 67068499 G A 37 88 BRCA TCGA-AR-A0TX ZNF236 SNP Silent 18 74611135 C T 30 49 BRCA TCGA-AR-A0TX COL5A3 SNP Nonsense_Mutation 19 10108093 G C 45 57 BRCA TCGA-AR-A0TX KANK2 SNP Missense_Mutation 19 11283661 C G 28 100 BRCA TCGA-AR-A0TX CACNA1A SNP Silent 19 13418659 G A 37 50 BRCA TCGA-AR-A0TX RFX1 SNP Missense_Mutation 19 14080963 C G 29 98 BRCA TCGA-AR-A0TX ANO8 SNP Missense_Mutation 19 17444235 C G 29 91 BRCA TCGA-AR-A0TX ZNF556 SNP Missense_Mutation 19 2877800 G A 38 65 BRCA TCGA-AR-A0TX TLE6 SNP Missense_Mutation 19 2987056 G C 45 45 BRCA TCGA-AR-A0TX DMKN SNP Missense_Mutation 19 35990898 C A 25 50 BRCA TCGA-AR-A0TX NPHS1 SNP Silent 19 36336322 G A 48 60 BRCA TCGA-AR-A0TX ZNF585B SNP Missense_Mutation 19 37676240 C G 29 51 BRCA TCGA-AR-A0TX PAF1 SNP Silent 19 39876572 G A 33 56 BRCA TCGA-AR-A0TX C19orf47 SNP Silent 19 40834429 C T 29 76 BRCA TCGA-AR-A0TX TMEM145 SNP Missense_Mutation 19 42818951 C T 29 66 BRCA TCGA-AR-A0TX CLASRP SNP Missense_Mutation 19 45572374 G A 45 73 BRCA TCGA-AR-A0TX PPP1R13L SNP Missense_Mutation 19 45899449 C G 30 79 BRCA TCGA-AR-A0TX PPP1R13L SNP Missense_Mutation 19 45899461 C T 30 67 BRCA TCGA-AR-A0TX SPHK2 SNP Missense_Mutation 19 49132338 C T 32 62 BRCA TCGA-AR-A0TX ALDH16A1 SNP Missense_Mutation 19 49965915 G A 37 46 BRCA TCGA-AR-A0TX SIGLEC9 SNP Silent 19 51630516 C T 31 50 BRCA TCGA-AR-A0TX SHISA7 SNP Silent 19 55948979 C T 32 51 BRCA TCGA-AR-A0TX ZNF671 SNP Silent 19 58232983 G C 45 38 BRCA TCGA-AR-A0TX ZNF446 SNP Silent 19 58991184 C T 21 42 BRCA TCGA-AR-A0TX SLC25A41 SNP Missense_Mutation 19 6427163 C G 32 72 BRCA TCGA-AR-A0TX PRSS57 SNP Missense_Mutation 19 694935 C G 31 73 BRCA TCGA-AR-A0TX ZNF358 SNP Missense_Mutation 19 7585539 C G 32 48 BRCA TCGA-AR-A0TX CAMSAP3 SNP Missense_Mutation 19 7677124 G C 41 50 BRCA TCGA-AR-A0TX KANK3 SNP Missense_Mutation 19 8399284 C T 29 93 BRCA TCGA-AR-A0TX MUC16 SNP Nonsense_Mutation 19 9066267 G C 45 46 BRCA TCGA-AR-A0TX GCC2 SNP Missense_Mutation 2 109109048 G C 33 98 BRCA TCGA-AR-A0TX RANBP2 SNP Nonsense_Mutation 2 109380099 C G 29 86 BRCA TCGA-AR-A0TX ZC3H6 SNP Missense_Mutation 2 113089934 G A 45 96 BRCA TCGA-AR-A0TX ROCK2 SNP Missense_Mutation 2 11332346 C G 32 100 BRCA TCGA-AR-A0TX EPB41L5 SNP Missense_Mutation 2 120848015 C G 32 67 BRCA TCGA-AR-A0TX KYNU SNP Missense_Mutation 2 143746426 C G 32 49 BRCA TCGA-AR-A0TX KIF5C SNP Missense_Mutation 2 149835493 G C 41 100 BRCA TCGA-AR-A0TX NBAS SNP Missense_Mutation 2 15449336 C T 29 93 BRCA TCGA-AR-A0TX BAZ2B SNP Missense_Mutation 2 160231237 C T 29 95 BRCA TCGA-AR-A0TX KCNH7 SNP Missense_Mutation 2 163241275 G A 46 60 BRCA TCGA-AR-A0TX ABCB11 SNP Missense_Mutation 2 169826001 C A 32 100 BRCA TCGA-AR-A0TX LRP2 SNP Missense_Mutation 2 170097843 C T 29 100 BRCA TCGA-AR-A0TX MYO3B SNP Missense_Mutation 2 171355142 G C 46 57 BRCA TCGA-AR-A0TX GAD1 SNP Missense_Mutation 2 171709249 C T 29 100 BRCA TCGA-AR-A0TX TTN SNP Missense_Mutation 2 179429698 C G 30 100 BRCA TCGA-AR-A0TX TTN SNP Missense_Mutation 2 179456070 C T 29 100 BRCA TCGA-AR-A0TX TTN SNP Silent 2 179650716 G A 39 53 BRCA TCGA-AR-A0TX CWC22 SNP Missense_Mutation 2 180851479 C G 32 55 BRCA TCGA-AR-A0TX DNAH7 SNP Missense_Mutation 2 196749517 G A 45 79 BRCA TCGA-AR-A0TX STK17B SNP Nonsense_Mutation 2 197010664 G A 45 80 BRCA TCGA-AR-A0TX HECW2 SNP Missense_Mutation 2 197105211 C G 32 76 BRCA TCGA-AR-A0TX STRADB SNP Silent 2 202342409 C T 32 63 BRCA TCGA-AR-A0TX FARSB SNP Missense_Mutation 2 223464670 C T 30 84 BRCA TCGA-AR-A0TX NLRC4 SNP Missense_Mutation 2 32474920 C G 20 63 BRCA TCGA-AR-A0TX BIRC6 SNP Missense_Mutation 2 32770872 C T 32 100 BRCA TCGA-AR-A0TX RNASEH1 SNP Missense_Mutation 2 3605784 G C 37 42 BRCA TCGA-AR-A0TX ARHGEF33 SNP Nonsense_Mutation 2 39184142 C T 29 85 BRCA TCGA-AR-A0TX SOS1 SNP Missense_Mutation 2 39214691 C T 29 100 BRCA TCGA-AR-A0TX SLC8A1 SNP Missense_Mutation 2 40655984 G C 45 64 BRCA TCGA-AR-A0TX ABCG5 SNP Silent 2 44065696 G C 41 50 BRCA TCGA-AR-A0TX SLC3A1 SNP Nonsense_Mutation 2 44540987 C G 29 68 BRCA TCGA-AR-A0TX SLC3A1 SNP Nonsense_Mutation 2 44541065 C G 29 62 BRCA TCGA-AR-A0TX CCDC88A SNP Missense_Mutation 2 55530210 G A 41 98 BRCA TCGA-AR-A0TX SMEK2 SNP Missense_Mutation 2 55791554 C T 29 89 BRCA TCGA-AR-A0TX USP34 SNP Missense_Mutation 2 61468708 G A 45 100 BRCA TCGA-AR-A0TX ETAA1 SNP Missense_Mutation 2 67637053 G C 33 52 BRCA TCGA-AR-A0TX ARHGAP25 SNP Missense_Mutation 2 69034499 C T 29 83 BRCA TCGA-AR-A0TX ZNF638 SNP Silent 2 71591252 C T 29 53 BRCA TCGA-AR-A0TX MOGS SNP Missense_Mutation 2 74688908 G C 45 81 BRCA TCGA-AR-A0TX MRPL53 SNP Missense_Mutation 2 74699718 C G 31 75 BRCA TCGA-AR-A0TX THNSL2 SNP Splice_site 2 88474160 C T 32 97 BRCA TCGA-AR-A0TX THNSL2 SNP Missense_Mutation 2 88474177 C G 29 73 BRCA TCGA-AR-A0TX SIRPB2 SNP Missense_Mutation 20 1460486 C T 32 71 BRCA TCGA-AR-A0TX FAM83C SNP Silent 20 33876299 G A 45 75 BRCA TCGA-AR-A0TX ADRA1D SNP Silent 20 4229170 C T 29 51 BRCA TCGA-AR-A0TX WFDC6 SNP Missense_Mutation 20 44163071 G A 41 50 BRCA TCGA-AR-A0TX ACOT8 SNP Missense_Mutation 20 44472970 G A 41 79 BRCA TCGA-AR-A0TX ACOT8 SNP Silent 20 44473023 G A 45 55 BRCA TCGA-AR-A0TX SYCP2 SNP Missense_Mutation 20 58441426 G C 41 55 BRCA TCGA-AR-A0TX CHGB SNP Missense_Mutation 20 5904085 C T 32 45 BRCA TCGA-AR-A0TX MYT1 SNP Missense_Mutation 20 62854671 G C 33 77 BRCA TCGA-AR-A0TX ADAMTS1 SNP Missense_Mutation 21 28212328 C G 32 97 BRCA TCGA-AR-A0TX SSTR3 SNP Missense_Mutation 22 37602828 C T 30 84 BRCA TCGA-AR-A0TX PIM3 SNP Missense_Mutation 22 50356707 G A 45 73 BRCA TCGA-AR-A0TX TUBGCP6 SNP Missense_Mutation 22 50658734 G C 41 42 BRCA TCGA-AR-A0TX ARMCX5 SNP Silent 23 101858368 T C 49 48 BRCA TCGA-AR-A0TX RAB40AL SNP Missense_Mutation 23 102192645 G C 33 59 BRCA TCGA-AR-A0TX NXF3 SNP Missense_Mutation 23 102338141 C G 32 62 BRCA TCGA-AR-A0TX NRK SNP Silent 23 105193653 C T 22 45 BRCA TCGA-AR-A0TX CXorf57 SNP Missense_Mutation 23 105879798 G C 45 79 BRCA TCGA-AR-A0TX LRCH2 SNP Silent 23 114384630 G A 33 62 BRCA TCGA-AR-A0TX GRIA3 SNP Splice_Site 23 122460065 G T 44 94 BRCA TCGA-AR-A0TX DCAF12L1 SNP Missense_Mutation 23 125685470 G C 33 65 BRCA TCGA-AR-A0TX SOX3 SNP Silent 23 139586809 C T 29 50 BRCA TCGA-AR-A0TX GPR64 SNP Silent 23 19028892 G A 37 53 BRCA TCGA-AR-A0TX RPS6KA3 SNP Silent 23 20174329 C T 32 63 BRCA TCGA-AR-A0TX UBA1 SNP Splice_site 23 47070624 G A 47 94 BRCA TCGA-AR-A0TX HDAC6 SNP Missense_Mutation 23 48681327 G C 33 59 BRCA TCGA-AR-A0TX ITIH6 SNP Silent 23 54785121 C T 29 56 BRCA TCGA-AR-A0TX ARHGEF9 SNP Missense_Mutation 23 62885817 G T 44 71 BRCA TCGA-AR-A0TX MED12 SNP Missense_Mutation 23 70352039 G C 33 51 BRCA TCGA-AR-A0TX KIAA2022 SNP Missense_Mutation 23 73962610 C G 32 54 BRCA TCGA-AR-A0TX ATP7A SNP Missense_Mutation 23 77294386 G A 45 95 BRCA TCGA-AR-A0TX ALCAM SNP Missense_Mutation 3 105271008 G A 45 86 BRCA TCGA-AR-A0TX GOLGB1 SNP Silent 3 121415752 G A 45 47 BRCA TCGA-AR-A0TX CASR SNP Missense_Mutation 3 121975980 G A 41 100 BRCA TCGA-AR-A0TX PARP9 SNP Missense_Mutation 3 122247483 C T 29 77 BRCA TCGA-AR-A0TX TRIM59 SNP Silent 3 160155837 G A 33 37 BRCA TCGA-AR-A0TX PHC3 SNP Nonsense_Mutation 3 169847254 G A 45 84 BRCA TCGA-AR-A0TX PLD1 SNP Missense_Mutation 3 171442510 C T 32 90 BRCA TCGA-AR-A0TX ATP13A4 SNP Nonsense_Mutation 3 193151690 G C 45 70 BRCA TCGA-AR-A0TX LRRC15 SNP Missense_Mutation 3 194081543 G A 45 68 BRCA TCGA-AR-A0TX ATP13A3 SNP Missense_Mutation 3 194158079 C T 28 100 BRCA TCGA-AR-A0TX MUC4 SNP Missense_Mutation 3 195511634 G C 33 44 BRCA TCGA-AR-A0TX DLG1 SNP Nonsense_Mutation 3 197023229 G A 45 92 BRCA TCGA-AR-A0TX LRRN1 SNP Missense_Mutation 3 3888343 C G 32 98 BRCA TCGA-AR-A0TX CDCP1 SNP Missense_Mutation 3 45127171 G T 41 70 BRCA TCGA-AR-A0TX CCR2 SNP Missense_Mutation 3 46399034 C T 31 49 BRCA TCGA-AR-A0TX SETD2 SNP Nonsense_Mutation 3 47165587 G C 45 63 BRCA TCGA-AR-A0TX LAMB2 SNP Silent 3 49160162 G A 41 79 BRCA TCGA-AR-A0TX USP4 SNP Missense_Mutation 3 49348063 G C 41 97 BRCA TCGA-AR-A0TX AMIGO3 SNP Silent 3 49756806 G C 41 49 BRCA TCGA-AR-A0TX PBRM1 SNP Missense_Mutation 3 52668737 C G 30 57 BRCA TCGA-AR-A0TX CENPE SNP Silent 4 104081791 C T 29 49 BRCA TCGA-AR-A0TX CXXC4 SNP Silent 4 105412003 G A 36 95 BRCA TCGA-AR-A0TX TET2 SNP Nonsense_Mutation 4 106196474 C T 29 78 BRCA TCGA-AR-A0TX C4orf21 SNP Missense_Mutation 4 113540297 C G 32 55 BRCA TCGA-AR-A0TX USP53 SNP Missense_Mutation 4 120190905 C G 32 58 BRCA TCGA-AR-A0TX USP38 SNP Silent 4 144119005 G A 45 70 BRCA TCGA-AR-A0TX FAM160A1 SNP Silent 4 152499108 C T 29 74 BRCA TCGA-AR-A0TX RAPGEF2 SNP Missense_Mutation 4 160264511 G A 37 100 BRCA TCGA-AR-A0TX FSTL5 SNP Missense_Mutation 4 162680647 C G 29 83 BRCA TCGA-AR-A0TX N4BP2 SNP Missense_Mutation 4 40124825 C T 32 89 BRCA TCGA-AR-A0TX ATP10D SNP Missense_Mutation 4 47538793 G A 45 80 BRCA TCGA-AR-A0TX EPHA5 SNP Missense_Mutation 4 66201769 C T 25 100 BRCA TCGA-AR-A0TX UBA6 SNP Missense_Mutation 4 68539460 C G 32 52 BRCA TCGA-AR-A0TX PPEF2 SNP Missense_Mutation 4 76811237 G C 41 58 BRCA TCGA-AR-A0TX FRAS1 SNP Silent 4 79328836 G A 45 54 BRCA TCGA-AR-A0TX WDFY3 SNP Missense_Mutation 4 85674919 C T 29 78 BRCA TCGA-AR-A0TX SNCAIP SNP Silent 5 121785558 C G 29 59 BRCA TCGA-AR-A0TX EGR1 SNP Silent 5 137802624 G C 45 76 BRCA TCGA-AR-A0TX PCDHA10 SNP Missense_Mutation 5 140235680 C G 31 43 BRCA TCGA-AR-A0TX PCDHB1 SNP Missense_Mutation 5 140432874 C G 32 76 BRCA TCGA-AR-A0TX SLC6A7 SNP Missense_Mutation 5 149576681 C G 32 71 BRCA TCGA-AR-A0TX DCTN4 SNP Missense_Mutation 5 150135984 C G 32 65 BRCA TCGA-AR-A0TX GLRA1 SNP Silent 5 151231107 C G 29 86 BRCA TCGA-AR-A0TX FGFR4 SNP Missense_Mutation 5 176519704 G A 37 98 BRCA TCGA-AR-A0TX PRELID1 SNP Splice_site 5 176730986 G A 37 61 BRCA TCGA-AR-A0TX RGS14 SNP Missense_Mutation 5 176799049 G C 45 41 BRCA TCGA-AR-A0TX PDZD2 SNP Missense_Mutation 5 32091263 G A 33 76 BRCA TCGA-AR-A0TX ANKRD31 SNP Missense_Mutation 5 74441898 G C 33 53 BRCA TCGA-AR-A0TX XRCC4 SNP Missense_Mutation 5 82554427 G A 37 60 BRCA TCGA-AR-A0TX VCAN SNP Missense_Mutation 5 82817735 C G 30 56 BRCA TCGA-AR-A0TX ZDHHC11 SNP Silent 5 837564 G C 45 42 BRCA TCGA-AR-A0TX WASF1 SNP Missense_Mutation 6 110434565 C G 17 73 BRCA TCGA-AR-A0TX DSE SNP Missense_Mutation 6 116758321 C T 32 100 BRCA TCGA-AR-A0TX TCF21 SNP Missense_Mutation 6 134212887 G A 45 100 BRCA TCGA-AR-A0TX FUCA2 SNP Silent 6 143825229 G A 41 56 BRCA TCGA-AR-A0TX UTRN SNP Silent 6 144780060 C T 29 53 BRCA TCGA-AR-A0TX MTHFD1L SNP Missense_Mutation 6 151247385 G C 33 85 BRCA TCGA-AR-A0TX CCDC170 SNP Nonsense_Mutation 6 151907144 C T 29 75 BRCA TCGA-AR-A0TX MAP3K4 SNP Nonsense_Mutation 6 161507647 C A 29 97 BRCA TCGA-AR-A0TX GPR31 SNP Missense_Mutation 6 167570935 G C 45 46 BRCA TCGA-AR-A0TX KIF13A SNP Silent 6 17799620 G C 33 64 BRCA TCGA-AR-A0TX MRS2 SNP Missense_Mutation 6 24416704 G C 33 97 BRCA TCGA-AR-A0TX HIST1H3F SNP Missense_Mutation 6 26250619 A G 14 89 BRCA TCGA-AR-A0TX HIST1H2BI SNP Silent 6 26273272 G A 33 77 BRCA TCGA-AR-A0TX BTN2A1 SNP Missense_Mutation 6 26463541 C G 32 71 BRCA TCGA-AR-A0TX OR2B2 SNP Missense_Mutation 6 27879431 G C 47 59 BRCA TCGA-AR-A0TX ZNF187 SNP Nonsense_Mutation 6 28244787 C T 29 44 BRCA TCGA-AR-A0TX KIFC1 SNP Missense_Mutation 6 33365888 G T 41 57 BRCA TCGA-AR-A0TX SRPK1 SNP Missense_Mutation 6 35858711 C G 29 92 BRCA TCGA-AR-A0TX TBCC SNP Missense_Mutation 6 42713653 C G 32 54 BRCA TCGA-AR-A0TX HMGCLL1 SNP Missense_Mutation 6 55381378 C T 29 64 BRCA TCGA-AR-A0TX RAB23 SNP Silent 6 57061379 G A 33 66 BRCA TCGA-AR-A0TX PHF3 SNP Silent 6 64422164 C T 29 48 BRCA TCGA-AR-A0TX MB21D1 SNP Missense_Mutation 6 74135220 G C 33 62 BRCA TCGA-AR-A0TX PGM3 SNP Missense_Mutation 6 83896771 T G 63 73 BRCA TCGA-AR-A0TX NT5E SNP Missense_Mutation 6 86176793 G C 45 94 BRCA TCGA-AR-A0TX MDN1 SNP Silent 6 90406153 C T 32 51 BRCA TCGA-AR-A0TX CFTR SNP Missense_Mutation 7 117188830 G C 33 72 BRCA TCGA-AR-A0TX ATP6V0E2 SNP Splice_site 7 149575859 G A 45 68 BRCA TCGA-AR-A0TX GIMAP1 SNP Missense_Mutation 7 150417814 G A 39 50 BRCA TCGA-AR-A0TX MLL3 SNP Missense_Mutation 7 151945354 C T 30 51 BRCA TCGA-AR-A0TX DNAH11 SNP Missense_Mutation 7 21658797 G A 37 46 BRCA TCGA-AR-A0TX OSBPL3 SNP Silent 7 24874204 C A 29 48 BRCA TCGA-AR-A0TX BMPER SNP Missense_Mutation 7 34125658 G A 41 100 BRCA TCGA-AR-A0TX PKD1L1 SNP Missense_Mutation 7 47840422 G A 33 41 BRCA TCGA-AR-A0TX POM121L12 SNP Missense_Mutation 7 53104112 G A 45 47 BRCA TCGA-AR-A0TX PION SNP Missense_Mutation 7 77011930 G C 33 54 BRCA TCGA-AR-A0TX SAMD9L SNP Missense_Mutation 7 92763064 G A 45 97 BRCA TCGA-AR-A0TX ENPP2 SNP Missense_Mutation 8 120602768 G A 41 97 BRCA TCGA-AR-A0TX TSTA3 SNP Silent 8 144696575 G C 47 54 BRCA TCGA-AR-A0TX ADAM18 SNP Missense_Mutation 8 39495172 G T 41 68 BRCA TCGA-AR-A0TX MTFR1 SNP Missense_Mutation 8 66616961 A G 12 62 BRCA TCGA-AR-A0TX NCOA2 SNP Silent 8 71068737 C T 29 46 BRCA TCGA-AR-A0TX ODF2 SNP Missense_Mutation 9 131262505 C A 30 82 BRCA TCGA-AR-A0TX ZDHHC12 SNP Silent 9 131484019 C T 32 62 BRCA TCGA-AR-A0TX ADAMTSL1 SNP Silent 9 18662042 G A 35 54 BRCA TCGA-AR-A0TX VCP SNP Nonsense_Mutation 9 35059573 G A 45 100 BRCA TCGA-AR-A0TX PAX5 SNP Missense_Mutation 9 36923468 G A 45 94 BRCA TCGA-AR-A0TX GLIS3 SNP Missense_Mutation 9 4286347 G A 45 73 BRCA TCGA-AR-A0TX CD274 SNP Missense_Mutation 9 5466805 G C 33 56 BRCA TCGA-AR-A0TX TMEM2 SNP Missense_Mutation 9 74355044 T C 63 59 BRCA TCGA-AR-A0TX PTPRD SNP Missense_Mutation 9 8485307 G C 45 84 BRCA TCGA-AR-A0TX SPIN1 SNP Silent 9 91090081 G A 37 25 BRCA TCGA-AR-A0TX S1PR3 SNP Missense_Mutation 9 91616385 C G 31 35 BRCA TCGA-AR-A0TY FRRS1 DEL Frame_Shift_Del 1 100195231 C - 31 91 BRCA TCGA-AR-A0TY PRAMEF11 SNP Missense_Mutation 1 12887458 C A 32 60 BRCA TCGA-AR-A0TY PDE4DIP SNP Missense_Mutation 1 144877222 G A 40 68 BRCA TCGA-AR-A0TY OR10Z1 SNP Missense_Mutation 1 158577066 G T 48 80 BRCA TCGA-AR-A0TY BLZF1 SNP Silent 1 169347609 G T 43 49 BRCA TCGA-AR-A0TY RGSL1 SNP Missense_Mutation 1 182442910 G A 40 32 BRCA TCGA-AR-A0TY NR5A2 DEL In_Frame_Del 1 200143157 TGG - 55 93 BRCA TCGA-AR-A0TY NR5A2 DEL Frame_Shift_Del 1 200143161 CTACACAATGTGT - 20 58 BRCA TCGA-AR-A0TY KIAA1804 SNP Silent 1 233490631 C A 31 51 BRCA TCGA-AR-A0TY RPAP2 SNP Silent 1 92789086 A G 4 43 BRCA TCGA-AR-A0TY WDR96 SNP Missense_Mutation 10 105953739 A T 11 55 BRCA TCGA-AR-A0TY MRC1 SNP Missense_Mutation 10 18155569 C A 25 68 BRCA TCGA-AR-A0TY GATA3 INS Frame_Shift_Ins 10 8115952 - CC 6 76 BRCA TCGA-AR-A0TY PAPSS2 SNP Silent 10 89505676 C A 21 57 BRCA TCGA-AR-A0TY MICAL2 SNP Missense_Mutation 11 12229617 G A 43 100 BRCA TCGA-AR-A0TY OR10G9 SNP Missense_Mutation 11 123894140 G A 46 51 BRCA TCGA-AR-A0TY MUC5B DEL Frame_Shift_Del 11 1257711 C - 30 80 BRCA TCGA-AR-A0TY NELL1 SNP Silent 11 21250897 C T 27 39 BRCA TCGA-AR-A0TY ATG16L2 SNP Missense_Mutation 11 72535862 T C 56 57 BRCA TCGA-AR-A0TY LRRC10 DEL Frame_Shift_Del 12 70004164 C - 26 100 BRCA TCGA-AR-A0TY EEA1 SNP Nonsense_Mutation 12 93170706 G A 48 97 BRCA TCGA-AR-A0TY FAM70B SNP Missense_Mutation 13 114498127 G T 42 93 BRCA TCGA-AR-A0TY NYNRIN SNP Missense_Mutation 14 24885799 C T 31 64 BRCA TCGA-AR-A0TY CRABP1 SNP Splice_site 15 78633562 G C 35 70 BRCA TCGA-AR-A0TY HEATR3 SNP Missense_Mutation 16 50136311 G C 46 58 BRCA TCGA-AR-A0TY TAF1C SNP Missense_Mutation 16 84217059 C T 23 40 BRCA TCGA-AR-A0TY FSCN2 DNP Missense_Mutation 17 79496124 TG CC 59 45 BRCA TCGA-AR-A0TY LAMA3 DEL Frame_Shift_Del 18 21426463 C - 19 54 BRCA TCGA-AR-A0TY GCDH SNP Missense_Mutation 19 13002750 G C 33 64 BRCA TCGA-AR-A0TY ZNF556 SNP Missense_Mutation 19 2878290 G A 33 63 BRCA TCGA-AR-A0TY LRG1 INS Frame_Shift_Ins 19 4538291 - T 28 53 BRCA TCGA-AR-A0TY EN1 SNP Missense_Mutation 2 119600568 C A 24 62 BRCA TCGA-AR-A0TY CCDC108 SNP Silent 2 219895498 G A 39 4 BRCA TCGA-AR-A0TY ALMS1 SNP Missense_Mutation 2 73677994 A G 8 49 BRCA TCGA-AR-A0TY CSRP2BP INS Frame_Shift_Ins 20 18163939 - T 26 100 BRCA TCGA-AR-A0TY CSRP2BP DEL Splice_Site 20 18163944 TA - 57 93 BRCA TCGA-AR-A0TY NINL SNP Missense_Mutation 20 25485550 C A 19 59 BRCA TCGA-AR-A0TY BPIFB4 SNP Missense_Mutation 20 31671497 C T 27 67 BRCA TCGA-AR-A0TY CTNNBL1 SNP Silent 20 36407705 C T 27 36 BRCA TCGA-AR-A0TY ADARB1 SNP Missense_Mutation 21 46604943 C T 19 97 BRCA TCGA-AR-A0TY TRMT2A DEL Frame_Shift_Del 22 20103700 T - 54 88 BRCA TCGA-AR-A0TY EIF2S3 SNP Missense_Mutation 23 24082440 C A 26 95 BRCA TCGA-AR-A0TY MAGIX SNP Silent 23 49021387 C T 28 48 BRCA TCGA-AR-A0TY PVRL3 SNP Missense_Mutation 3 110845147 G T 44 87 BRCA TCGA-AR-A0TY CPNE4 SNP Nonsense_Mutation 3 131388574 G T 45 80 BRCA TCGA-AR-A0TY WNT7A SNP Silent 3 13896104 G A 33 55 BRCA TCGA-AR-A0TY CLDN11 SNP Missense_Mutation 3 170136900 G A 40 59 BRCA TCGA-AR-A0TY FLNB SNP Missense_Mutation 3 58124245 T G 56 94 BRCA TCGA-AR-A0TY DDIT4L SNP Missense_Mutation 4 101109088 C T 19 79 BRCA TCGA-AR-A0TY PCDHA11 SNP Missense_Mutation 5 140250369 G A 38 55 BRCA TCGA-AR-A0TY FGF18 SNP Missense_Mutation 5 170847438 C A 30 60 BRCA TCGA-AR-A0TY FGF10 SNP Missense_Mutation 5 44388528 G A 44 68 BRCA TCGA-AR-A0TY SEMA5A SNP Missense_Mutation 5 9202176 G T 37 73 BRCA TCGA-AR-A0TY GPR110 SNP Missense_Mutation 6 46976980 C A 32 67 BRCA TCGA-AR-A0TY PKHD1 INS Frame_Shift_Ins 6 51484109 - C 7 61 BRCA TCGA-AR-A0TY MUC17 SNP Missense_Mutation 7 100696407 G A 38 43 BRCA TCGA-AR-A0TY RELN SNP Nonsense_Mutation 7 103191642 G T 34 67 BRCA TCGA-AR-A0TY SPDYE1 SNP Missense_Mutation 7 44047341 G A 42 51 BRCA TCGA-AR-A0TY DLX6 SNP Missense_Mutation 7 96635577 C A 19 66 BRCA TCGA-AR-A0TY SULF1 SNP Missense_Mutation 8 70550743 C A 32 74 BRCA TCGA-AR-A0TY NAIF1 SNP Silent 9 130825869 G T 47 72 BRCA TCGA-AR-A0TY USP20 DEL Frame_Shift_Del 9 132623252 CC - 30 83 BRCA TCGA-AR-A0TZ PCNXL2 SNP Silent 1 233121877 C T 29 53 BRCA TCGA-AR-A0TZ ZP4 SNP Silent 1 238049138 G A 45 38 BRCA TCGA-AR-A0TZ SLC1A7 SNP Missense_Mutation 1 53608037 C T 19 59 BRCA TCGA-AR-A0TZ SRSF11 SNP Missense_Mutation 1 70700442 G C 47 81 BRCA TCGA-AR-A0TZ ZMYND11 SNP Missense_Mutation 10 294305 T G 60 67 BRCA TCGA-AR-A0TZ ZMYND11 SNP Missense_Mutation 10 294311 C A 26 80 BRCA TCGA-AR-A0TZ ZEB1 SNP Missense_Mutation 10 31815672 G A 37 100 BRCA TCGA-AR-A0TZ CTR9 SNP Missense_Mutation 11 10777333 G A 34 100 BRCA TCGA-AR-A0TZ JAM3 SNP Silent 11 133939011 C G 32 57 BRCA TCGA-AR-A0TZ DCDC5 SNP Missense_Mutation 11 30928204 C T 29 56 BRCA TCGA-AR-A0TZ LGALS12 SNP Missense_Mutation 11 63277343 G C 33 45 BRCA TCGA-AR-A0TZ EHD1 SNP Missense_Mutation 11 64622955 G A 45 93 BRCA TCGA-AR-A0TZ CPT1A SNP Missense_Mutation 11 68552302 C A 28 85 BRCA TCGA-AR-A0TZ SHANK2 SNP Silent 11 70653135 G T 41 58 BRCA TCGA-AR-A0TZ SHANK2 SNP Silent 11 70653231 G A 37 47 BRCA TCGA-AR-A0TZ SHANK2 SNP Silent 11 70653240 G C 33 49 BRCA TCGA-AR-A0TZ CIT SNP Missense_Mutation 12 120156653 C T 31 93 BRCA TCGA-AR-A0TZ ZNF268 DEL In_Frame_Del 12 133780972 CTT - 24 43 BRCA TCGA-AR-A0TZ SIPA1L1 SNP Missense_Mutation 14 72125116 C G 32 100 BRCA TCGA-AR-A0TZ FCF1 SNP Splice_site 14 75200780 A G 8 91 BRCA TCGA-AR-A0TZ STON2 SNP Missense_Mutation 14 81744003 T A 50 61 BRCA TCGA-AR-A0TZ SNURF SNP Missense_Mutation 15 25200202 C T 27 64 BRCA TCGA-AR-A0TZ NOX5 SNP Silent 15 69328195 G A 37 48 BRCA TCGA-AR-A0TZ STRA6 SNP Silent 15 74489717 G C 33 49 BRCA TCGA-AR-A0TZ SNP Missense_Mutation 16 28354350 C T 29 51 BRCA TCGA-AR-A0TZ PRR14 SNP Missense_Mutation 16 30667601 C T 17 54 BRCA TCGA-AR-A0TZ NAT15 SNP Missense_Mutation 16 3533483 G A 33 96 BRCA TCGA-AR-A0TZ PIGW SNP Missense_Mutation 17 34893216 T G 64 69 BRCA TCGA-AR-A0TZ LPO SNP Missense_Mutation 17 56329723 C T 23 59 BRCA TCGA-AR-A0TZ FBF1 SNP Missense_Mutation 17 73919517 G A 41 49 BRCA TCGA-AR-A0TZ MBD5 SNP Missense_Mutation 2 149227152 G T 41 81 BRCA TCGA-AR-A0TZ CSRNP3 SNP Missense_Mutation 2 166536142 C T 25 76 BRCA TCGA-AR-A0TZ DYNC1I2 SNP Missense_Mutation 2 172563065 G A 45 71 BRCA TCGA-AR-A0TZ UNC80 SNP Silent 2 210858856 G A 38 38 BRCA TCGA-AR-A0TZ PCSK2 SNP Nonsense_Mutation 20 17208116 G T 47 80 BRCA TCGA-AR-A0TZ CST2 SNP Nonsense_Mutation 20 23807084 G A 40 49 BRCA TCGA-AR-A0TZ ATP1B4 SNP Missense_Mutation 23 119510247 C T 31 71 BRCA TCGA-AR-A0TZ MAGEA8 SNP Silent 23 149013838 G A 38 56 BRCA TCGA-AR-A0TZ HCFC1 SNP Missense_Mutation 23 153236135 C T 31 90 BRCA TCGA-AR-A0TZ SNP Missense_Mutation 23 51150887 C T 19 39 BRCA TCGA-AR-A0TZ B4GALT4 SNP Silent 3 118937505 G C 45 57 BRCA TCGA-AR-A0TZ CEP70 SNP Missense_Mutation 3 138218960 G C 44 48 BRCA TCGA-AR-A0TZ PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-AR-A0TZ ZNF167 SNP Missense_Mutation 3 44612650 G T 33 80 BRCA TCGA-AR-A0TZ BSN SNP Missense_Mutation 3 49698885 C T 23 66 BRCA TCGA-AR-A0TZ NPY1R SNP Missense_Mutation 4 164247281 T C 61 42 BRCA TCGA-AR-A0TZ LIAS SNP Splice_Site 4 39474832 G T 44 96 BRCA TCGA-AR-A0TZ SCFD2 SNP Missense_Mutation 4 54218895 T A 50 77 BRCA TCGA-AR-A0TZ DSPP SNP Missense_Mutation 4 88537101 G A 34 66 BRCA TCGA-AR-A0TZ DSPP SNP Missense_Mutation 4 88537227 G A 34 53 BRCA TCGA-AR-A0TZ AFF4 SNP Missense_Mutation 5 132269985 G A 38 70 BRCA TCGA-AR-A0TZ CLINT1 SNP Missense_Mutation 5 157244502 G A 40 100 BRCA TCGA-AR-A0TZ EMB SNP Missense_Mutation 5 49695120 G C 33 62 BRCA TCGA-AR-A0TZ MED23 SNP Missense_Mutation 6 131937087 G C 41 100 BRCA TCGA-AR-A0TZ HIST1H2AG SNP Silent 6 27100982 C T 31 29 BRCA TCGA-AR-A0TZ TFAP2B SNP Missense_Mutation 6 50803801 C T 32 96 BRCA TCGA-AR-A0TZ RELN SNP Silent 7 103162496 C T 19 52 BRCA TCGA-AR-A0TZ HIPK2 SNP Missense_Mutation 7 139311489 C T 32 100 BRCA TCGA-AR-A0TZ MLL3 SNP Missense_Mutation 7 151845516 T C 64 92 BRCA TCGA-AR-A0TZ HGF SNP Missense_Mutation 7 81386610 C G 32 88 BRCA TCGA-AR-A0TZ ZNF804B SNP Missense_Mutation 7 88965621 C T 29 51 BRCA TCGA-AR-A0TZ OC90 SNP Nonsense_Mutation 8 133045292 C A 29 48 BRCA TCGA-AR-A0TZ TRAPPC9 SNP Nonsense_Mutation 8 141262906 G A 47 94 BRCA TCGA-AR-A0TZ STC1 SNP Splice_Site 8 23709754 C T 18 95 BRCA TCGA-AR-A0TZ SDR16C5 SNP Missense_Mutation 8 57218238 C T 29 52 BRCA TCGA-AR-A0TZ TMEM8B SNP Missense_Mutation 9 35846559 G C 34 55 BRCA TCGA-AR-A0TZ ZNF658 SNP Missense_Mutation 9 40773494 C A 32 57 BRCA TCGA-AR-A0TZ KIAA2026 SNP Missense_Mutation 9 5988373 C G 32 89 BRCA TCGA-AR-A0U0 SELL SNP Nonsense_Mutation 1 169679648 C T 21 74 BRCA TCGA-AR-A0U0 PAPPA2 SNP Silent 1 176563934 C T 24 50 BRCA TCGA-AR-A0U0 PADI4 SNP Missense_Mutation 1 17682605 C A 26 96 BRCA TCGA-AR-A0U0 OR2AK2 SNP Missense_Mutation 1 248128766 G A 40 49 BRCA TCGA-AR-A0U0 PKD2L1 SNP Nonsense_Mutation 10 102049824 G C 45 55 BRCA TCGA-AR-A0U0 COL17A1 SNP Missense_Mutation 10 105792444 T G 64 87 BRCA TCGA-AR-A0U0 FDXACB1 SNP Missense_Mutation 11 111745970 A T 4 49 BRCA TCGA-AR-A0U0 ARID2 INS Frame_Shift_Ins 12 46245859 - G 7 60 BRCA TCGA-AR-A0U0 C1QTNF9B SNP Silent 13 24466087 G T 39 54 BRCA TCGA-AR-A0U0 ATP12A SNP Missense_Mutation 13 25264568 G T 33 60 BRCA TCGA-AR-A0U0 BCL11B SNP Silent 14 99640737 C T 23 53 BRCA TCGA-AR-A0U0 SPTBN5 SNP Silent 15 42160297 G A 42 48 BRCA TCGA-AR-A0U0 C16orf62 SNP Missense_Mutation 16 19656250 G C 45 57 BRCA TCGA-AR-A0U0 VWA3A DEL Frame_Shift_Del 16 22126692 A - 13 44 BRCA TCGA-AR-A0U0 ZNF200 SNP Missense_Mutation 16 3274374 C G 32 62 BRCA TCGA-AR-A0U0 PHLPP2 SNP Missense_Mutation 16 71686790 C T 31 99 BRCA TCGA-AR-A0U0 WNT9B SNP Missense_Mutation 17 44953699 C G 23 74 BRCA TCGA-AR-A0U0 TP53 SNP Missense_Mutation 17 7578268 A C 3 88 BRCA TCGA-AR-A0U0 EMILIN2 SNP Silent 18 2891304 G A 35 50 BRCA TCGA-AR-A0U0 C18orf34 SNP Missense_Mutation 18 30803162 G C 45 62 BRCA TCGA-AR-A0U0 SERPINB12 SNP Missense_Mutation 18 61225594 T A 56 72 BRCA TCGA-AR-A0U0 ZNF28 SNP Silent 19 53304396 C T 32 49 BRCA TCGA-AR-A0U0 LONRF2 SNP Missense_Mutation 2 100910844 G T 44 68 BRCA TCGA-AR-A0U0 TTN SNP Silent 2 179593823 G A 39 26 BRCA TCGA-AR-A0U0 TTN SNP Missense_Mutation 2 179650411 C T 27 71 BRCA TCGA-AR-A0U0 DOCK10 SNP Silent 2 225702539 G C 39 37 BRCA TCGA-AR-A0U0 RHBDD1 SNP Silent 2 227731981 G T 37 50 BRCA TCGA-AR-A0U0 TGM6 SNP Missense_Mutation 20 2377157 G A 37 61 BRCA TCGA-AR-A0U0 KCNK15 SNP Missense_Mutation 20 43379220 G A 38 98 BRCA TCGA-AR-A0U0 FXR1 SNP Missense_Mutation 3 180669241 C A 29 55 BRCA TCGA-AR-A0U0 C3orf70 SNP Missense_Mutation 3 184801097 C T 26 56 BRCA TCGA-AR-A0U0 EHHADH SNP Missense_Mutation 3 184910162 A G 2 91 BRCA TCGA-AR-A0U0 GALNTL6 SNP Splice_Site 4 172735562 G A 33 70 BRCA TCGA-AR-A0U0 GABRA4 SNP Nonsense_Mutation 4 46981098 T A 62 76 BRCA TCGA-AR-A0U0 PRDM6 SNP Missense_Mutation 5 122491674 G A 39 96 BRCA TCGA-AR-A0U0 FNIP1 SNP Missense_Mutation 5 131014737 T C 52 89 BRCA TCGA-AR-A0U0 PIK3R1 DEL In_Frame_Del 5 67591104 TTAAACCAGACC - 52 90 BRCA TCGA-AR-A0U0 MYCT1 SNP Missense_Mutation 6 153043015 C A 32 73 BRCA TCGA-AR-A0U0 DNAH8 SNP Missense_Mutation 6 38834385 C T 27 88 BRCA TCGA-AR-A0U0 ICK SNP Missense_Mutation 6 52878680 G A 46 55 BRCA TCGA-AR-A0U0 MLL3 SNP Missense_Mutation 7 151927054 C T 17 98 BRCA TCGA-AR-A0U0 AKAP9 SNP Missense_Mutation 7 91641812 C G 29 91 BRCA TCGA-AR-A0U0 PABPC1 SNP Silent 8 101716544 G A 39 48 BRCA TCGA-AR-A0U0 OR13C4 SNP Missense_Mutation 9 107288781 G T 46 77 BRCA TCGA-AR-A0U0 OR13C8 SNP Missense_Mutation 9 107331457 G C 41 47 BRCA TCGA-AR-A0U1 PSMA5 SNP Missense_Mutation 1 109952632 A C 8 91 BRCA TCGA-AR-A0U1 KIAA0907 SNP Missense_Mutation 1 155903461 T C 64 89 BRCA TCGA-AR-A0U1 PEAR1 SNP Missense_Mutation 1 156883814 T A 55 55 BRCA TCGA-AR-A0U1 UAP1 SNP Missense_Mutation 1 162557384 C G 19 50 BRCA TCGA-AR-A0U1 NECAP2 SNP Missense_Mutation 1 16770220 G T 41 58 BRCA TCGA-AR-A0U1 SLC45A3 SNP Missense_Mutation 1 205628387 C G 28 58 BRCA TCGA-AR-A0U1 PTPN14 SNP Missense_Mutation 1 214557148 G C 47 72 BRCA TCGA-AR-A0U1 SIPA1L2 SNP Missense_Mutation 1 232650538 T C 60 91 BRCA TCGA-AR-A0U1 EIF3I SNP Missense_Mutation 1 32694340 A G 6 65 BRCA TCGA-AR-A0U1 HIVEP3 SNP Missense_Mutation 1 41976178 C T 21 56 BRCA TCGA-AR-A0U1 ACTR1A SNP Missense_Mutation 10 104247996 C T 30 100 BRCA TCGA-AR-A0U1 PLEKHS1 SNP Missense_Mutation 10 115540387 C G 30 56 BRCA TCGA-AR-A0U1 ITGA8 SNP Splice_Site 10 15573048 C A 20 85 BRCA TCGA-AR-A0U1 ZNF37A SNP Silent 10 38407207 A G 6 47 BRCA TCGA-AR-A0U1 MUC5B SNP Silent 11 1264014 G C 45 49 BRCA TCGA-AR-A0U1 IGSF9B SNP Splice_site 11 133807856 G T 42 100 BRCA TCGA-AR-A0U1 TRIM49B SNP Missense_Mutation 11 49053370 G A 47 58 BRCA TCGA-AR-A0U1 OR4A5 SNP Missense_Mutation 11 51411671 G C 44 47 BRCA TCGA-AR-A0U1 OR5L2 SNP Missense_Mutation 11 55594925 T G 63 49 BRCA TCGA-AR-A0U1 RTN4RL2 SNP Silent 11 57235332 C T 32 81 BRCA TCGA-AR-A0U1 PDE2A SNP Missense_Mutation 11 72300269 C G 22 78 BRCA TCGA-AR-A0U1 AACS SNP Missense_Mutation 12 125576043 T A 54 59 BRCA TCGA-AR-A0U1 RIMBP2 SNP Missense_Mutation 12 130927134 G A 38 80 BRCA TCGA-AR-A0U1 CARS2 DEL In_Frame_Del 13 111319757 ATG - 8 45 BRCA TCGA-AR-A0U1 SPG20 SNP Missense_Mutation 13 36886528 A G 12 64 BRCA TCGA-AR-A0U1 OXGR1 SNP Missense_Mutation 13 97639673 T C 51 92 BRCA TCGA-AR-A0U1 PEAK1 SNP Silent 15 77406585 G A 42 64 BRCA TCGA-AR-A0U1 ENSG00000236421 SNP Missense_Mutation 16 15082151 G A 42 76 BRCA TCGA-AR-A0U1 SYT17 SNP Nonsense_Mutation 16 19278387 G T 41 88 BRCA TCGA-AR-A0U1 ARHGAP17 SNP Missense_Mutation 16 24979688 C G 30 93 BRCA TCGA-AR-A0U1 ITGAX SNP Silent 16 31373963 G T 43 54 BRCA TCGA-AR-A0U1 ITGAD SNP Splice_Site 16 31425771 G C 35 74 BRCA TCGA-AR-A0U1 PHKB SNP Missense_Mutation 16 47531346 C T 21 55 BRCA TCGA-AR-A0U1 TMUB2 SNP Missense_Mutation 17 42265092 C G 32 72 BRCA TCGA-AR-A0U1 NUP88 SNP Missense_Mutation 17 5289552 C G 29 79 BRCA TCGA-AR-A0U1 TP53 SNP Missense_Mutation 17 7578190 T C 49 88 BRCA TCGA-AR-A0U1 USP36 SNP Silent 17 76803593 C T 23 48 BRCA TCGA-AR-A0U1 ANKRD30B SNP Missense_Mutation 18 14803817 T G 52 35 BRCA TCGA-AR-A0U1 DHPS SNP Missense_Mutation 19 12788192 T G 53 76 BRCA TCGA-AR-A0U1 ARHGEF1 SNP Splice_Site 19 42410774 T C 59 79 BRCA TCGA-AR-A0U1 LILRA5 SNP Missense_Mutation 19 54822884 A G 9 51 BRCA TCGA-AR-A0U1 CYP27C1 SNP Splice_Site 2 127952909 A G 14 87 BRCA TCGA-AR-A0U1 GALNT5 SNP Missense_Mutation 2 158152231 C A 18 100 BRCA TCGA-AR-A0U1 LRP2 SNP Missense_Mutation 2 170011097 C G 25 52 BRCA TCGA-AR-A0U1 LRP2 SNP Missense_Mutation 2 170063488 C T 19 50 BRCA TCGA-AR-A0U1 BMPR2 SNP Nonsense_Mutation 2 203242213 C T 25 79 BRCA TCGA-AR-A0U1 SPEG SNP Missense_Mutation 2 220333886 T A 55 90 BRCA TCGA-AR-A0U1 ARMC9 SNP Silent 2 232156119 C T 30 54 BRCA TCGA-AR-A0U1 ZSWIM3 SNP Missense_Mutation 20 44506036 A G 3 53 BRCA TCGA-AR-A0U1 PTGIS SNP Missense_Mutation 20 48124493 T A 60 46 BRCA TCGA-AR-A0U1 DDX26B SNP Missense_Mutation 23 134713802 G C 33 62 BRCA TCGA-AR-A0U1 CEP63 SNP Missense_Mutation 3 134268924 A G 7 71 BRCA TCGA-AR-A0U1 PRR23B SNP Missense_Mutation 3 138738845 C T 27 45 BRCA TCGA-AR-A0U1 PLS1 SNP Silent 3 142403210 C T 21 59 BRCA TCGA-AR-A0U1 AP2M1 DEL Frame_Shift_Del 3 183899476 GCTTGCAGCGGGAA - 46 53 BRCA TCGA-AR-A0U1 EPHA6 SNP Missense_Mutation 3 97356897 G T 33 100 BRCA TCGA-AR-A0U1 ARL6 SNP Missense_Mutation 3 97506865 C A 32 72 BRCA TCGA-AR-A0U1 METTL14 SNP Missense_Mutation 4 119609080 G C 47 74 BRCA TCGA-AR-A0U1 CPZ SNP Missense_Mutation 4 8620195 G A 39 99 BRCA TCGA-AR-A0U1 C5orf65 SNP Missense_Mutation 5 138729667 C G 32 50 BRCA TCGA-AR-A0U1 PARP8 SNP Nonsense_Mutation 5 50055554 A T 15 59 BRCA TCGA-AR-A0U1 NEDD9 SNP Missense_Mutation 6 11190312 T A 55 64 BRCA TCGA-AR-A0U1 BTN3A1 SNP Silent 6 26412970 A G 4 49 BRCA TCGA-AR-A0U1 LAMB4 SNP Missense_Mutation 7 107746436 C G 28 49 BRCA TCGA-AR-A0U1 RSPO2 SNP Missense_Mutation 8 109001415 C A 22 95 BRCA TCGA-AR-A0U1 CSPP1 SNP Missense_Mutation 8 68024243 A G 11 65 BRCA TCGA-AR-A0U1 NECAB1 SNP Missense_Mutation 8 91937819 G T 34 57 BRCA TCGA-AR-A0U1 ZNF169 SNP Missense_Mutation 9 97063282 C A 17 53 BRCA TCGA-AR-A0U2 PRMT6 SNP Missense_Mutation 1 107600277 C T 22 65 BRCA TCGA-AR-A0U2 ZNF687 SNP Missense_Mutation 1 151261890 C A 29 66 BRCA TCGA-AR-A0U2 PI4KB SNP Missense_Mutation 1 151265399 C T 30 97 BRCA TCGA-AR-A0U2 USH2A SNP Missense_Mutation 1 215844346 C T 31 53 BRCA TCGA-AR-A0U2 ZNF678 SNP Splice_site 1 227751396 A T 12 53 BRCA TCGA-AR-A0U2 OR2AK2 SNP Missense_Mutation 1 248128766 G A 40 49 BRCA TCGA-AR-A0U2 PFKP SNP Silent 10 3159021 C T 21 51 BRCA TCGA-AR-A0U2 CSTF2T SNP Missense_Mutation 10 53458363 C T 27 66 BRCA TCGA-AR-A0U2 GATA3 SNP Missense_Mutation 10 8115746 A T 9 58 BRCA TCGA-AR-A0U2 GATA3 INS Frame_Shift_Ins 10 8115874 - G 31 85 BRCA TCGA-AR-A0U2 OLFML1 SNP Silent 11 7530894 T C 49 52 BRCA TCGA-AR-A0U2 FAT3 SNP Missense_Mutation 11 92087880 T A 61 91 BRCA TCGA-AR-A0U2 KDM5A SNP Silent 12 465641 C T 26 47 BRCA TCGA-AR-A0U2 CD163L1 SNP Missense_Mutation 12 7556322 A C 2 66 BRCA TCGA-AR-A0U2 TPTE2 SNP Silent 13 20048197 C G 21 52 BRCA TCGA-AR-A0U2 PPP2R5C SNP Splice_Site 14 102384167 G A 36 95 BRCA TCGA-AR-A0U2 FOXN3 SNP Missense_Mutation 14 89629077 C T 23 57 BRCA TCGA-AR-A0U2 GABRA5 SNP Missense_Mutation 15 27114436 A T 2 53 BRCA TCGA-AR-A0U2 FSD2 DEL In_Frame_Del 15 83451757 TTC - 60 55 BRCA TCGA-AR-A0U2 MMP2 SNP Missense_Mutation 16 55519539 G A 38 97 BRCA TCGA-AR-A0U2 WDR24 SNP Missense_Mutation 16 737628 C T 23 94 BRCA TCGA-AR-A0U2 CNTNAP4 SNP Missense_Mutation 16 76501400 C G 20 56 BRCA TCGA-AR-A0U2 TP53 SNP Missense_Mutation 17 7578403 C A 25 84 BRCA TCGA-AR-A0U2 ZNF823 SNP Missense_Mutation 19 11834071 G T 35 49 BRCA TCGA-AR-A0U2 AXL SNP Missense_Mutation 19 41743883 C T 27 51 BRCA TCGA-AR-A0U2 ZNF233 SNP Missense_Mutation 19 44770438 G A 33 52 BRCA TCGA-AR-A0U2 FAM71E2 SNP Silent 19 55871057 C G 26 45 BRCA TCGA-AR-A0U2 NLRP4 SNP Missense_Mutation 19 56369409 C T 17 47 BRCA TCGA-AR-A0U2 THSD7B SNP Missense_Mutation 2 138169282 C A 20 51 BRCA TCGA-AR-A0U2 WDR75 SNP Missense_Mutation 2 190332305 T C 49 68 BRCA TCGA-AR-A0U2 CAMKMT SNP Missense_Mutation 2 44993576 C T 27 97 BRCA TCGA-AR-A0U2 SSTR4 SNP Silent 20 23016492 C T 27 51 BRCA TCGA-AR-A0U2 AURKA SNP Missense_Mutation 20 54961390 G A 46 64 BRCA TCGA-AR-A0U2 NCAM2 SNP Silent 21 22910263 C T 19 48 BRCA TCGA-AR-A0U2 SEC14L4 SNP Missense_Mutation 22 30891919 C T 31 89 BRCA TCGA-AR-A0U2 IL13RA2 SNP Silent 23 114242577 G A 34 70 BRCA TCGA-AR-A0U2 SENP7 SNP Missense_Mutation 3 101136588 G C 40 69 BRCA TCGA-AR-A0U2 PLXNA1 SNP Missense_Mutation 3 126739137 C T 27 60 BRCA TCGA-AR-A0U2 TBL1XR1 SNP Missense_Mutation 3 176769373 C A 28 93 BRCA TCGA-AR-A0U2 GPR125 SNP Missense_Mutation 4 22438157 C T 27 99 BRCA TCGA-AR-A0U2 HTN3 SNP Silent 4 70898889 G A 34 42 BRCA TCGA-AR-A0U2 GRXCR2 SNP Missense_Mutation 5 145252330 C T 21 76 BRCA TCGA-AR-A0U2 DOPEY1 SNP Nonsense_Mutation 6 83872606 C T 19 83 BRCA TCGA-AR-A0U2 PPP1R3A SNP Silent 7 113520082 C A 18 48 BRCA TCGA-AR-A0U2 IMPDH1 SNP Missense_Mutation 7 128041163 G T 44 94 BRCA TCGA-AR-A0U2 KIAA1549 SNP Missense_Mutation 7 138602615 G A 39 51 BRCA TCGA-AR-A0U2 HIPK2 SNP Missense_Mutation 7 139297952 G C 42 98 BRCA TCGA-AR-A0U2 OSBPL3 SNP Missense_Mutation 7 24902870 G T 48 51 BRCA TCGA-AR-A0U2 AEBP1 SNP Missense_Mutation 7 44151594 G A 38 99 BRCA TCGA-AR-A0U2 SLC7A13 SNP Missense_Mutation 8 87242353 C T 19 43 BRCA TCGA-AR-A0U2 ZFP37 SNP Missense_Mutation 9 115806423 T C 62 51 BRCA TCGA-AR-A0U2 C5 SNP Silent 9 123778623 C T 22 49 BRCA TCGA-AR-A0U3 BCL9 SNP Missense_Mutation 1 147095879 C T 19 74 BRCA TCGA-AR-A0U3 CELA2B SNP Silent 1 15802980 G A 38 52 BRCA TCGA-AR-A0U3 RGS5 SNP Missense_Mutation 1 163117185 C T 30 95 BRCA TCGA-AR-A0U3 CALML6 SNP Silent 1 1848267 C T 27 46 BRCA TCGA-AR-A0U3 PLD5 SNP Silent 1 242253180 G A 38 38 BRCA TCGA-AR-A0U3 KLF17 SNP Missense_Mutation 1 44595388 G A 47 57 BRCA TCGA-AR-A0U3 KIF2C SNP Missense_Mutation 1 45213334 G A 39 64 BRCA TCGA-AR-A0U3 ABCC2 SNP Missense_Mutation 10 101595869 C T 23 70 BRCA TCGA-AR-A0U3 TMEM9B SNP Missense_Mutation 11 8969901 T A 56 79 BRCA TCGA-AR-A0U3 UHRF1BP1L SNP Silent 12 100482727 T C 57 53 BRCA TCGA-AR-A0U3 RFX4 SNP Missense_Mutation 12 107078653 C T 31 56 BRCA TCGA-AR-A0U3 DAO SNP Nonsense_Mutation 12 109288102 C T 19 66 BRCA TCGA-AR-A0U3 WSB2 SNP Missense_Mutation 12 118472017 G T 48 98 BRCA TCGA-AR-A0U3 MLEC SNP Missense_Mutation 12 121125241 G A 40 82 BRCA TCGA-AR-A0U3 WASF3 SNP Missense_Mutation 13 27259977 G A 37 98 BRCA TCGA-AR-A0U3 SLC7A1 SNP Splice_site 13 30088615 C T 27 30 BRCA TCGA-AR-A0U3 NPAP1 DEL Frame_Shift_Del 15 24923646 C - 17 51 BRCA TCGA-AR-A0U3 MAPKBP1 SNP Missense_Mutation 15 42104263 G A 38 63 BRCA TCGA-AR-A0U3 UNC45A SNP Missense_Mutation 15 91496180 G T 35 60 BRCA TCGA-AR-A0U3 SLX4 SNP Missense_Mutation 16 3640194 C A 32 52 BRCA TCGA-AR-A0U3 ADCY9 SNP Missense_Mutation 16 4042255 C A 30 80 BRCA TCGA-AR-A0U3 HDAC5 SNP Missense_Mutation 17 42171145 C T 30 86 BRCA TCGA-AR-A0U3 C17orf104 SNP Nonsense_Mutation 17 42745436 C G 18 50 BRCA TCGA-AR-A0U3 NMT1 SNP Nonsense_Mutation 17 43183002 C T 17 88 BRCA TCGA-AR-A0U3 VPS53 SNP Missense_Mutation 17 489514 C A 32 97 BRCA TCGA-AR-A0U3 TP53 DEL Frame_Shift_Del 17 7578429 C - 28 50 BRCA TCGA-AR-A0U3 SMCHD1 SNP Silent 18 2743899 C T 30 47 BRCA TCGA-AR-A0U3 RFXANK SNP Nonsense_Mutation 19 19304795 C T 21 61 BRCA TCGA-AR-A0U3 LOC284441 SNP Silent 19 20369546 A C 7 46 BRCA TCGA-AR-A0U3 ALKBH7 SNP Missense_Mutation 19 6374526 G A 46 92 BRCA TCGA-AR-A0U3 RGPD3 DEL Frame_Shift_Del 2 107040513 TAGA - 61 78 BRCA TCGA-AR-A0U3 PVRL3 SNP Missense_Mutation 3 110837787 T G 52 53 BRCA TCGA-AR-A0U3 FEZF2 SNP Silent 3 62356989 C A 19 50 BRCA TCGA-AR-A0U3 PABPC4L SNP Missense_Mutation 4 135121651 C T 31 92 BRCA TCGA-AR-A0U3 PABPC4L SNP Nonsense_Mutation 4 135122010 G C 40 50 BRCA TCGA-AR-A0U3 DNAH5 SNP Missense_Mutation 5 13737575 C T 21 60 BRCA TCGA-AR-A0U3 PCDHGB6 SNP Missense_Mutation 5 140788351 A T 16 53 BRCA TCGA-AR-A0U3 MGAM SNP Silent 7 141765159 G A 34 67 BRCA TCGA-AR-A0U3 MGAM SNP Missense_Mutation 7 141765575 A T 12 85 BRCA TCGA-AR-A0U3 TEK SNP Silent 9 27169494 G A 46 55 BRCA TCGA-AR-A0U4 VPS13D SNP Missense_Mutation 1 12429735 G A 46 99 BRCA TCGA-AR-A0U4 LCE3D SNP Missense_Mutation 1 152552220 G A 38 70 BRCA TCGA-AR-A0U4 TPM3 SNP Missense_Mutation 1 154148687 T G 55 91 BRCA TCGA-AR-A0U4 ARHGEF2 SNP Splice_site 1 155921711 C G 24 56 BRCA TCGA-AR-A0U4 SLAMF9 SNP Missense_Mutation 1 159923245 T G 57 61 BRCA TCGA-AR-A0U4 SCYL3 SNP Missense_Mutation 1 169845177 C G 30 97 BRCA TCGA-AR-A0U4 RABGAP1L SNP Missense_Mutation 1 174274155 A G 12 75 BRCA TCGA-AR-A0U4 PLA2G4A SNP Missense_Mutation 1 186934649 G C 33 96 BRCA TCGA-AR-A0U4 KCNT2 SNP Missense_Mutation 1 196227288 C T 19 51 BRCA TCGA-AR-A0U4 DENND1B SNP Silent 1 197586881 G T 35 59 BRCA TCGA-AR-A0U4 PRELP SNP Missense_Mutation 1 203452522 C G 30 53 BRCA TCGA-AR-A0U4 C4BPB SNP Nonsense_Mutation 1 207273267 T A 63 51 BRCA TCGA-AR-A0U4 DTL SNP Missense_Mutation 1 212273666 C G 23 86 BRCA TCGA-AR-A0U4 USH2A SNP Missense_Mutation 1 216246506 A T 8 60 BRCA TCGA-AR-A0U4 FAM177B SNP Nonsense_Mutation 1 222923350 C T 21 58 BRCA TCGA-AR-A0U4 WDR26 SNP Silent 1 224621463 C T 32 65 BRCA TCGA-AR-A0U4 MIXL1 SNP Missense_Mutation 1 226413484 C G 17 65 BRCA TCGA-AR-A0U4 KIAA1804 SNP Missense_Mutation 1 233515289 G A 44 49 BRCA TCGA-AR-A0U4 CYP4A22 SNP Silent 1 47610575 G A 39 50 BRCA TCGA-AR-A0U4 SPATA6 SNP Missense_Mutation 1 48771547 C T 29 72 BRCA TCGA-AR-A0U4 CAMTA1 SNP Silent 1 6885189 C A 32 84 BRCA TCGA-AR-A0U4 LRRC8D SNP Silent 1 90401198 G C 41 68 BRCA TCGA-AR-A0U4 WDFY4 SNP Missense_Mutation 10 50034788 C T 32 96 BRCA TCGA-AR-A0U4 RBM17 SNP Missense_Mutation 10 6157483 C G 17 64 BRCA TCGA-AR-A0U4 CCAR1 SNP Missense_Mutation 10 70531089 G C 33 98 BRCA TCGA-AR-A0U4 AIFM2 SNP Missense_Mutation 10 71883252 G A 33 96 BRCA TCGA-AR-A0U4 DYNC2H1 SNP Silent 11 103043913 A C 7 55 BRCA TCGA-AR-A0U4 CASP5 SNP Missense_Mutation 11 104872843 T A 52 39 BRCA TCGA-AR-A0U4 SLC37A2 SNP Silent 11 124947164 C T 21 49 BRCA TCGA-AR-A0U4 OR52N1 SNP Silent 11 5809246 C T 22 51 BRCA TCGA-AR-A0U4 RIC3 SNP Missense_Mutation 11 8148314 G C 34 60 BRCA TCGA-AR-A0U4 IGF1 SNP Missense_Mutation 12 102811671 G C 45 62 BRCA TCGA-AR-A0U4 KSR2 SNP Silent 12 118105367 G A 39 56 BRCA TCGA-AR-A0U4 ANAPC5 SNP Missense_Mutation 12 121785662 T A 64 60 BRCA TCGA-AR-A0U4 EFCAB4B SNP Missense_Mutation 12 3806004 C G 24 53 BRCA TCGA-AR-A0U4 SPATA13 SNP Missense_Mutation 13 24876828 C A 25 98 BRCA TCGA-AR-A0U4 FRY SNP Missense_Mutation 13 32802751 G T 33 99 BRCA TCGA-AR-A0U4 DGKH SNP Missense_Mutation 13 42748243 T C 53 73 BRCA TCGA-AR-A0U4 TEP1 SNP Missense_Mutation 14 20842649 G A 45 50 BRCA TCGA-AR-A0U4 SYNE2 SNP Missense_Mutation 14 64641829 G A 45 59 BRCA TCGA-AR-A0U4 ZFP36L1 SNP Missense_Mutation 14 69259623 G C 37 53 BRCA TCGA-AR-A0U4 AK7 SNP Nonsense_Mutation 14 96924483 G T 41 58 BRCA TCGA-AR-A0U4 BCL11B DEL Frame_Shift_Del 14 99642448 T - 60 77 BRCA TCGA-AR-A0U4 PCSK6 SNP Missense_Mutation 15 101872156 A G 11 60 BRCA TCGA-AR-A0U4 TUBGCP5 SNP Silent 15 22840285 G A 48 52 BRCA TCGA-AR-A0U4 PGBD4 SNP Silent 15 34395497 G C 48 36 BRCA TCGA-AR-A0U4 CPEB1 SNP Missense_Mutation 15 83240140 C G 30 97 BRCA TCGA-AR-A0U4 FSD2 SNP Missense_Mutation 15 83438615 T C 62 86 BRCA TCGA-AR-A0U4 TTLL13 SNP Missense_Mutation 15 90794054 A C 3 60 BRCA TCGA-AR-A0U4 CRAMP1L SNP Missense_Mutation 16 1717989 G C 34 61 BRCA TCGA-AR-A0U4 PDILT SNP Missense_Mutation 16 20410472 C T 27 56 BRCA TCGA-AR-A0U4 USP31 SNP Silent 16 23091346 C G 30 57 BRCA TCGA-AR-A0U4 CHD9 DEL In_Frame_Del 16 53260373 AAA - 13 51 BRCA TCGA-AR-A0U4 CENPT SNP Missense_Mutation 16 67866406 C G 29 62 BRCA TCGA-AR-A0U4 PMFBP1 SNP Missense_Mutation 16 72159951 C G 32 59 BRCA TCGA-AR-A0U4 KLHDC4 SNP Missense_Mutation 16 87741983 C T 23 56 BRCA TCGA-AR-A0U4 GRIN2A SNP Missense_Mutation 16 9934578 A G 6 77 BRCA TCGA-AR-A0U4 ZNF624 SNP Silent 17 16526952 G A 48 57 BRCA TCGA-AR-A0U4 BRCA1 INS Frame_Shift_Ins 17 41244185 - T 16 49 BRCA TCGA-AR-A0U4 TEX14 SNP Missense_Mutation 17 56729272 C A 17 66 BRCA TCGA-AR-A0U4 TACO1 SNP Silent 17 61684785 C T 29 49 BRCA TCGA-AR-A0U4 FTSJ3 SNP Silent 17 61902771 A C 2 54 BRCA TCGA-AR-A0U4 LRRC37A3 SNP Missense_Mutation 17 62856069 C T 32 62 BRCA TCGA-AR-A0U4 DNAI2 SNP Nonsense_Mutation 17 72287263 G T 47 93 BRCA TCGA-AR-A0U4 TEN1 SNP Missense_Mutation 17 73987591 C T 28 68 BRCA TCGA-AR-A0U4 TP53 SNP Missense_Mutation 17 7578272 G A 46 97 BRCA TCGA-AR-A0U4 ZNF519 SNP Nonsense_Mutation 18 14105748 G T 45 78 BRCA TCGA-AR-A0U4 ASXL3 SNP Missense_Mutation 18 31320100 T G 59 50 BRCA TCGA-AR-A0U4 MOCOS DEL Frame_Shift_Del 18 33785056 A - 13 38 BRCA TCGA-AR-A0U4 CETN1 SNP Silent 18 580663 C T 28 55 BRCA TCGA-AR-A0U4 DAZAP1 SNP Splice_Site 19 1417497 A C 7 86 BRCA TCGA-AR-A0U4 ZNF420 SNP Nonsense_Mutation 19 37619823 C T 29 45 BRCA TCGA-AR-A0U4 PSG1 SNP Silent 19 43372953 G T 39 61 BRCA TCGA-AR-A0U4 ZNF274 SNP Missense_Mutation 19 58724128 A T 1 50 BRCA TCGA-AR-A0U4 ZNF544 SNP Missense_Mutation 19 58772496 C G 24 63 BRCA TCGA-AR-A0U4 MUC16 SNP Missense_Mutation 19 9089290 C T 20 48 BRCA TCGA-AR-A0U4 FHL2 SNP Missense_Mutation 2 105990062 G T 40 51 BRCA TCGA-AR-A0U4 IL1A SNP Missense_Mutation 2 113532775 C T 23 53 BRCA TCGA-AR-A0U4 IL1RN SNP Missense_Mutation 2 113885269 C T 19 76 BRCA TCGA-AR-A0U4 THSD7B SNP Silent 2 137814396 A G 16 20 BRCA TCGA-AR-A0U4 SCN3A SNP Missense_Mutation 2 165986515 C T 30 85 BRCA TCGA-AR-A0U4 DYNC1I2 SNP Missense_Mutation 2 172582151 G C 36 76 BRCA TCGA-AR-A0U4 TTN SNP Missense_Mutation 2 179610505 G T 47 100 BRCA TCGA-AR-A0U4 ASNSD1 SNP Silent 2 190532250 C G 32 53 BRCA TCGA-AR-A0U4 ANKAR SNP Missense_Mutation 2 190611212 G C 33 54 BRCA TCGA-AR-A0U4 DOCK10 SNP Missense_Mutation 2 225695261 G C 41 49 BRCA TCGA-AR-A0U4 LOC729898 SNP Nonsense_Mutation 2 232299105 G T 48 42 BRCA TCGA-AR-A0U4 ADCY3 SNP Missense_Mutation 2 25062816 C G 32 98 BRCA TCGA-AR-A0U4 TTC7A SNP Missense_Mutation 2 47184096 A G 2 88 BRCA TCGA-AR-A0U4 GPR75 SNP Missense_Mutation 2 54080944 G C 41 97 BRCA TCGA-AR-A0U4 PSME4 SNP Missense_Mutation 2 54131220 G A 43 100 BRCA TCGA-AR-A0U4 C2orf73 SNP Missense_Mutation 2 54570904 A T 6 58 BRCA TCGA-AR-A0U4 TOP1 SNP Missense_Mutation 20 39708771 C A 30 60 BRCA TCGA-AR-A0U4 TRMT6 SNP Missense_Mutation 20 5924616 C A 25 98 BRCA TCGA-AR-A0U4 KIAA1210 SNP Silent 23 118239057 A T 7 58 BRCA TCGA-AR-A0U4 AFF2 SNP Missense_Mutation 23 148044260 G C 41 57 BRCA TCGA-AR-A0U4 MAMLD1 SNP Missense_Mutation 23 149631099 G A 41 49 BRCA TCGA-AR-A0U4 DKC1 SNP Missense_Mutation 23 154004477 G A 45 77 BRCA TCGA-AR-A0U4 CASK SNP Missense_Mutation 23 41390422 C A 32 65 BRCA TCGA-AR-A0U4 DUSP21 SNP Missense_Mutation 23 44703517 C T 31 54 BRCA TCGA-AR-A0U4 ZNF81 SNP Missense_Mutation 23 47775310 C A 26 67 BRCA TCGA-AR-A0U4 PFKFB1 SNP Missense_Mutation 23 54986262 C T 25 80 BRCA TCGA-AR-A0U4 CD24L4 SNP Missense_Mutation 24 21154479 C G 32 43 BRCA TCGA-AR-A0U4 VWA5B2 SNP Splice_site 3 183951521 G T 35 82 BRCA TCGA-AR-A0U4 TRANK1 SNP Missense_Mutation 3 36873231 C T 18 65 BRCA TCGA-AR-A0U4 ITPR1 SNP Missense_Mutation 3 4774890 A G 3 89 BRCA TCGA-AR-A0U4 PRKAR2A SNP Missense_Mutation 3 48789035 C A 22 56 BRCA TCGA-AR-A0U4 CPNE9 SNP Splice_site 3 9757047 A T 11 90 BRCA TCGA-AR-A0U4 ENSG00000187900 SNP Nonsense_Mutation 3 97958049 T G 61 64 BRCA TCGA-AR-A0U4 CLDND1 SNP Missense_Mutation 3 98240270 C G 32 60 BRCA TCGA-AR-A0U4 ADH6 SNP Missense_Mutation 4 100126182 C G 29 68 BRCA TCGA-AR-A0U4 MTTP SNP Missense_Mutation 4 100518317 C T 25 78 BRCA TCGA-AR-A0U4 ANKRD50 SNP Missense_Mutation 4 125591124 G C 33 96 BRCA TCGA-AR-A0U4 ENAM SNP Missense_Mutation 4 71509354 G T 46 45 BRCA TCGA-AR-A0U4 MMRN1 SNP Missense_Mutation 4 90816579 G C 34 55 BRCA TCGA-AR-A0U4 HSPA4 SNP Missense_Mutation 5 132428416 C A 18 67 BRCA TCGA-AR-A0U4 EGR1 SNP Missense_Mutation 5 137803252 A C 8 86 BRCA TCGA-AR-A0U4 DNAH5 SNP Missense_Mutation 5 13886097 C A 17 51 BRCA TCGA-AR-A0U4 PCDHGA4 SNP Missense_Mutation 5 140735294 G C 44 48 BRCA TCGA-AR-A0U4 C5orf4 SNP Silent 5 154202056 G C 33 55 BRCA TCGA-AR-A0U4 SPEF2 SNP Missense_Mutation 5 35628657 G C 41 61 BRCA TCGA-AR-A0U4 CAST SNP Nonsense_Mutation 5 96103182 C G 29 60 BRCA TCGA-AR-A0U4 HS3ST5 SNP Missense_Mutation 6 114379035 T A 50 93 BRCA TCGA-AR-A0U4 TAAR1 DEL Frame_Shift_Del 6 132966526 AT - 8 80 BRCA TCGA-AR-A0U4 MAS1 SNP Missense_Mutation 6 160328919 G C 38 55 BRCA TCGA-AR-A0U4 BTN3A1 SNP Silent 6 26413605 A T 15 29 BRCA TCGA-AR-A0U4 C6orf222 SNP Missense_Mutation 6 36294524 G C 33 58 BRCA TCGA-AR-A0U4 ZNF318 SNP Missense_Mutation 6 43322977 G A 41 68 BRCA TCGA-AR-A0U4 DST SNP Missense_Mutation 6 56380461 T G 60 67 BRCA TCGA-AR-A0U4 IMPG1 SNP Missense_Mutation 6 76660650 C A 29 54 BRCA TCGA-AR-A0U4 MICALL2 SNP Missense_Mutation 7 1474779 G C 48 55 BRCA TCGA-AR-A0U4 IL6 DEL Frame_Shift_Del 7 22767081 C - 26 66 BRCA TCGA-AR-A0U4 SNX8 SNP Silent 7 2296575 G T 33 51 BRCA TCGA-AR-A0U4 GPR141 SNP Silent 7 37780085 C T 27 44 BRCA TCGA-AR-A0U4 FBXO32 SNP Missense_Mutation 8 124525447 C G 32 56 BRCA TCGA-AR-A0U4 PPP2CB SNP Missense_Mutation 8 30651782 C G 21 96 BRCA TCGA-AR-A0U4 ADAM32 SNP Missense_Mutation 8 39103623 G T 48 52 BRCA TCGA-AR-A0U4 KCNS2 DEL Frame_Shift_Del 8 99440889 GAAATCGTGGAGCA - 37 79 BRCA TCGA-AR-A0U4 PRPF4 SNP Missense_Mutation 9 116048523 G C 46 100 BRCA TCGA-AR-A0U4 STXBP1 SNP Missense_Mutation 9 130428533 C G 28 97 BRCA TCGA-AR-A0U4 DCAF12 SNP Missense_Mutation 9 34093308 C G 17 98 BRCA TCGA-AR-A0U4 TRPM3 SNP Missense_Mutation 9 73461398 T G 55 94 BRCA TCGA-AR-A1AH MRPL20 SNP Missense_Mutation 1 1337585 G A 42 88 BRCA TCGA-AR-A1AH BCAN SNP Missense_Mutation 1 156622540 G T 42 52 BRCA TCGA-AR-A1AH NDUFS2 SNP Missense_Mutation 1 161179917 T G 56 87 BRCA TCGA-AR-A1AH PADI2 DEL Frame_Shift_Del 1 17418927 TGTC - 63 85 BRCA TCGA-AR-A1AH CFHR1 SNP Missense_Mutation 1 196800996 A G 3 54 BRCA TCGA-AR-A1AH PLXNA2 SNP Silent 1 208216496 G T 34 56 BRCA TCGA-AR-A1AH KCNH1 SNP Silent 1 210857058 C A 30 46 BRCA TCGA-AR-A1AH USH2A SNP Missense_Mutation 1 216371845 T G 55 59 BRCA TCGA-AR-A1AH ENAH SNP Missense_Mutation 1 225742665 T C 63 92 BRCA TCGA-AR-A1AH NR0B2 SNP Missense_Mutation 1 27240275 G C 45 52 BRCA TCGA-AR-A1AH ARHGAP22 SNP Missense_Mutation 10 49701493 C T 19 38 BRCA TCGA-AR-A1AH TLL2 SNP Missense_Mutation 10 98146742 T C 57 65 BRCA TCGA-AR-A1AH AMBRA1 SNP Missense_Mutation 11 46419289 G T 44 60 BRCA TCGA-AR-A1AH OR4C15 SNP Silent 11 55321983 G C 47 52 BRCA TCGA-AR-A1AH RPS6KA4 SNP Missense_Mutation 11 64137029 G A 40 92 BRCA TCGA-AR-A1AH UNC93B1 SNP Missense_Mutation 11 67766699 C A 22 94 BRCA TCGA-AR-A1AH ZNF214 SNP Missense_Mutation 11 7021508 G A 43 92 BRCA TCGA-AR-A1AH ACACB SNP Missense_Mutation 12 109675151 G A 38 99 BRCA TCGA-AR-A1AH ACAD10 SNP Missense_Mutation 12 112186223 C A 18 63 BRCA TCGA-AR-A1AH TMEM132C SNP Silent 12 129178526 C T 17 76 BRCA TCGA-AR-A1AH PTPRO SNP Missense_Mutation 12 15673153 C A 26 94 BRCA TCGA-AR-A1AH ITPR2 SNP Silent 12 26580852 T G 55 53 BRCA TCGA-AR-A1AH WNT10B SNP Missense_Mutation 12 49362067 C T 26 83 BRCA TCGA-AR-A1AH ING1 SNP Missense_Mutation 13 111371953 G T 38 54 BRCA TCGA-AR-A1AH ACOT4 SNP Silent 14 74058810 C T 19 53 BRCA TCGA-AR-A1AH ISM2 SNP Silent 14 77951026 A G 16 48 BRCA TCGA-AR-A1AH TIPIN SNP Missense_Mutation 15 66644500 A G 2 69 BRCA TCGA-AR-A1AH CCP110 SNP Missense_Mutation 16 19556209 G C 36 85 BRCA TCGA-AR-A1AH ZNF598 SNP Silent 16 2050140 C A 19 11 BRCA TCGA-AR-A1AH TNRC6A SNP Missense_Mutation 16 24801817 C A 17 60 BRCA TCGA-AR-A1AH KIAA0182 DEL Frame_Shift_Del 16 85667660 CTGTCGGC - 28 79 BRCA TCGA-AR-A1AH BANP SNP Silent 16 88098920 C T 29 50 BRCA TCGA-AR-A1AH SLC47A1 SNP Missense_Mutation 17 19452969 G A 37 56 BRCA TCGA-AR-A1AH SCN4A SNP Silent 17 62034711 G A 38 49 BRCA TCGA-AR-A1AH TP53 DEL Frame_Shift_Del 17 7579364 CC - 18 58 BRCA TCGA-AR-A1AH DNAH17 SNP Missense_Mutation 17 76423090 C A 20 99 BRCA TCGA-AR-A1AH OSBPL1A SNP Missense_Mutation 18 21745043 C G 24 52 BRCA TCGA-AR-A1AH ASXL3 SNP Missense_Mutation 18 31314340 C T 24 75 BRCA TCGA-AR-A1AH ZNF791 SNP Silent 19 12739378 A G 14 32 BRCA TCGA-AR-A1AH CYP4F11 SNP Splice_site 19 16038292 A T 7 51 BRCA TCGA-AR-A1AH MEF2B SNP Silent 19 19258546 G A 38 41 BRCA TCGA-AR-A1AH HAPLN4 SNP Nonsense_Mutation 19 19381141 G A 40 45 BRCA TCGA-AR-A1AH DKKL1 SNP Missense_Mutation 19 49869131 G T 43 53 BRCA TCGA-AR-A1AH MYH14 SNP Nonsense_Mutation 19 50713890 C T 27 54 BRCA TCGA-AR-A1AH PEG3 SNP Silent 19 57286770 T C 62 47 BRCA TCGA-AR-A1AH KHSRP INS Splice_Site 19 6415313 - TG 28 77 BRCA TCGA-AR-A1AH MUC16 SNP Missense_Mutation 19 9070668 G T 36 49 BRCA TCGA-AR-A1AH LOC100289293 SNP Silent 2 132724018 C T 27 36 BRCA TCGA-AR-A1AH NEB SNP Missense_Mutation 2 152507244 G T 33 57 BRCA TCGA-AR-A1AH LRP2 SNP Missense_Mutation 2 170063595 C A 32 53 BRCA TCGA-AR-A1AH INPP5D SNP Silent 2 233925287 C T 27 50 BRCA TCGA-AR-A1AH UGT1A10 SNP Missense_Mutation 2 234545725 C T 24 94 BRCA TCGA-AR-A1AH ASXL2 SNP Silent 2 25994378 T C 51 42 BRCA TCGA-AR-A1AH PRKCE SNP Silent 2 46234725 G A 42 68 BRCA TCGA-AR-A1AH PUS10 SNP Missense_Mutation 2 61175203 G C 35 86 BRCA TCGA-AR-A1AH SOX12 SNP Silent 20 307342 G T 46 65 BRCA TCGA-AR-A1AH MYH7B SNP Splice_Site 20 33577724 T C 57 85 BRCA TCGA-AR-A1AH FAM207A SNP Silent 21 46380034 T C 64 47 BRCA TCGA-AR-A1AH L1CAM SNP Silent 23 153130155 G T 33 49 BRCA TCGA-AR-A1AH PPEF1 SNP Missense_Mutation 23 18822127 C A 21 65 BRCA TCGA-AR-A1AH USP27X SNP Silent 23 49645615 C G 28 52 BRCA TCGA-AR-A1AH POU3F4 SNP Silent 23 82763506 G T 45 53 BRCA TCGA-AR-A1AH COL6A5 SNP Silent 3 130187808 C T 20 56 BRCA TCGA-AR-A1AH CNTN6 SNP Splice_Site 3 1320096 G T 33 90 BRCA TCGA-AR-A1AH MYD88 SNP Silent 3 38180431 A T 10 46 BRCA TCGA-AR-A1AH SCN10A SNP Missense_Mutation 3 38768529 G T 45 61 BRCA TCGA-AR-A1AH NSUN3 SNP Missense_Mutation 3 93845211 C G 19 46 BRCA TCGA-AR-A1AH TLL1 SNP Nonsense_Mutation 4 166913988 C T 27 68 BRCA TCGA-AR-A1AH UGT2B15 SNP Silent 4 69536304 C A 29 67 BRCA TCGA-AR-A1AH PCDHA9 SNP Missense_Mutation 5 140230439 G A 43 55 BRCA TCGA-AR-A1AH FAM193B DEL Frame_Shift_Del 5 176964948 G - 37 97 BRCA TCGA-AR-A1AH CDH6 SNP Missense_Mutation 5 31267600 T G 62 84 BRCA TCGA-AR-A1AH HEATR7B2 SNP Missense_Mutation 5 41048471 C G 32 63 BRCA TCGA-AR-A1AH AKD1 SNP Missense_Mutation 6 109850252 C T 26 76 BRCA TCGA-AR-A1AH VNN2 SNP Missense_Mutation 6 133078858 G C 40 54 BRCA TCGA-AR-A1AH SIRT5 SNP Splice_site 6 13599264 G C 44 66 BRCA TCGA-AR-A1AH RNF182 SNP Missense_Mutation 6 13977498 A C 5 89 BRCA TCGA-AR-A1AH SYNE1 SNP Missense_Mutation 6 152639373 C A 17 75 BRCA TCGA-AR-A1AH SYNE1 SNP Missense_Mutation 6 152716678 A T 8 60 BRCA TCGA-AR-A1AH OPRM1 SNP Missense_Mutation 6 154412347 G C 40 88 BRCA TCGA-AR-A1AH DPCR1 SNP Silent 6 30919364 T C 53 50 BRCA TCGA-AR-A1AH MDGA1 SNP Missense_Mutation 6 37614094 G T 46 81 BRCA TCGA-AR-A1AH C6orf132 SNP Missense_Mutation 6 42074796 C G 22 67 BRCA TCGA-AR-A1AH LOC100288198 SNP Missense_Mutation 6 79944327 G C 47 75 BRCA TCGA-AR-A1AH C7orf61 SNP Missense_Mutation 7 100054503 C T 19 44 BRCA TCGA-AR-A1AH SND1 SNP Silent 7 127731927 C T 27 44 BRCA TCGA-AR-A1AH CTAGE6 SNP Missense_Mutation 7 143453654 C A 25 41 BRCA TCGA-AR-A1AH C7orf10 SNP Missense_Mutation 7 40723677 G C 34 51 BRCA TCGA-AR-A1AH KIAA1324L SNP Missense_Mutation 7 86522367 G T 33 87 BRCA TCGA-AR-A1AH KIAA1324L SNP Splice_Site 7 86544037 A G 14 89 BRCA TCGA-AR-A1AH ADAMDEC1 SNP Silent 8 24257811 G A 45 60 BRCA TCGA-AR-A1AH ADRA1A SNP Missense_Mutation 8 26721870 C T 27 100 BRCA TCGA-AR-A1AH TM2D2 DEL In_Frame_Del 8 38852949 ATC - 12 42 BRCA TCGA-AR-A1AH CLDN23 SNP Silent 8 8560424 G T 47 61 BRCA TCGA-AR-A1AH SLC27A4 SNP Missense_Mutation 9 131105549 C A 29 62 BRCA TCGA-AR-A1AH WNK2 SNP Missense_Mutation 9 96051807 G C 41 58 BRCA TCGA-AR-A1AH PTCH1 SNP Missense_Mutation 9 98278972 T C 62 48 BRCA TCGA-AR-A1AI ANGEL2 SNP Silent 1 213174228 C A 22 72 BRCA TCGA-AR-A1AI MYOM3 SNP Silent 1 24402671 G A 39 28 BRCA TCGA-AR-A1AI ARID5B SNP Silent 10 63662061 G C 39 60 BRCA TCGA-AR-A1AI USP47 SNP Missense_Mutation 11 11964198 G T 34 80 BRCA TCGA-AR-A1AI RAG1 SNP Missense_Mutation 11 36597453 G A 41 99 BRCA TCGA-AR-A1AI ENSG00000186232 SNP Missense_Mutation 11 4351584 C A 25 61 BRCA TCGA-AR-A1AI ANAPC5 SNP Missense_Mutation 12 121747576 G A 37 65 BRCA TCGA-AR-A1AI P2RX2 SNP Missense_Mutation 12 133197899 G A 39 85 BRCA TCGA-AR-A1AI BRCA2 SNP Splice_site 13 32921032 C T 31 44 BRCA TCGA-AR-A1AI MYH7 SNP Missense_Mutation 14 23894170 C A 30 98 BRCA TCGA-AR-A1AI PRKD1 SNP Missense_Mutation 14 30095732 C G 29 100 BRCA TCGA-AR-A1AI DUOX2 SNP Silent 15 45392973 C G 29 58 BRCA TCGA-AR-A1AI DMXL2 SNP Silent 15 51766785 C G 29 68 BRCA TCGA-AR-A1AI LCTL DEL Splice_site 15 66853439 C - 26 60 BRCA TCGA-AR-A1AI TSR3 SNP Missense_Mutation 16 1400125 C T 30 71 BRCA TCGA-AR-A1AI PDXDC1 SNP Missense_Mutation 16 15112739 C T 20 89 BRCA TCGA-AR-A1AI PSMD7 SNP Missense_Mutation 16 74334086 G A 48 100 BRCA TCGA-AR-A1AI MPP2 SNP Splice_Site 17 41960570 C A 18 90 BRCA TCGA-AR-A1AI USP32 SNP Silent 17 58275782 C T 17 58 BRCA TCGA-AR-A1AI NEURL4 SNP Silent 17 7225003 G A 47 73 BRCA TCGA-AR-A1AI TP53 SNP Missense_Mutation 17 7577130 A T 3 87 BRCA TCGA-AR-A1AI CHD3 SNP Missense_Mutation 17 7796726 C T 27 95 BRCA TCGA-AR-A1AI MC5R SNP Silent 18 13826448 G A 38 53 BRCA TCGA-AR-A1AI LOC100128975 DEL Frame_Shift_Del 19 20047664 C - 18 59 BRCA TCGA-AR-A1AI ZNF675 SNP Missense_Mutation 19 23836780 T G 63 75 BRCA TCGA-AR-A1AI CYP2A13 SNP Missense_Mutation 19 41594877 C T 22 53 BRCA TCGA-AR-A1AI NLRP12 DEL Frame_Shift_Del 19 54313970 C - 30 55 BRCA TCGA-AR-A1AI LENG1 SNP Silent 19 54660722 G A 42 61 BRCA TCGA-AR-A1AI ZNF582 SNP Missense_Mutation 19 56896091 C T 17 97 BRCA TCGA-AR-A1AI ZDBF2 DEL Frame_Shift_Del 2 207174888 C - 28 52 BRCA TCGA-AR-A1AI ADCY3 SNP Missense_Mutation 2 25047329 C T 31 99 BRCA TCGA-AR-A1AI PDRG1 SNP Missense_Mutation 20 30534308 C G 29 78 BRCA TCGA-AR-A1AI PDGFB DEL Frame_Shift_Del 22 39626161 C - 26 65 BRCA TCGA-AR-A1AI PKDREJ SNP Silent 22 46654720 A C 7 41 BRCA TCGA-AR-A1AI DOCK11 SNP Missense_Mutation 23 117679333 A T 12 80 BRCA TCGA-AR-A1AI MTCP1NB SNP Nonsense_Mutation 23 154290173 G T 45 82 BRCA TCGA-AR-A1AI CCNB3 DEL Frame_Shift_Del 23 50052008 C - 18 53 BRCA TCGA-AR-A1AI SLC7A3 DEL Frame_Shift_Del 23 70147461 G - 47 51 BRCA TCGA-AR-A1AI CLSTN2 SNP Silent 3 140277551 C T 31 37 BRCA TCGA-AR-A1AI IGSF10 SNP Missense_Mutation 3 151160895 G A 41 86 BRCA TCGA-AR-A1AI ARHGEF3 SNP Missense_Mutation 3 56779405 C T 31 100 BRCA TCGA-AR-A1AI ZNF330 SNP Missense_Mutation 4 142151378 T A 63 80 BRCA TCGA-AR-A1AI TAPT1 SNP Missense_Mutation 4 16177795 C T 19 99 BRCA TCGA-AR-A1AI ANKRD17 SNP Missense_Mutation 4 73957689 G A 41 82 BRCA TCGA-AR-A1AI CDS1 SNP Missense_Mutation 4 85525478 G C 33 75 BRCA TCGA-AR-A1AI MAPK10 SNP Missense_Mutation 4 87028500 G A 38 85 BRCA TCGA-AR-A1AI TAF7 SNP Missense_Mutation 5 140699073 C G 23 78 BRCA TCGA-AR-A1AI PCDHGA1 SNP Missense_Mutation 5 140711613 G T 35 58 BRCA TCGA-AR-A1AI LPCAT1 SNP Missense_Mutation 5 1463930 C T 32 67 BRCA TCGA-AR-A1AI BRIX1 SNP Missense_Mutation 5 34925371 G C 33 49 BRCA TCGA-AR-A1AI CMYA5 SNP Missense_Mutation 5 79084809 C G 29 50 BRCA TCGA-AR-A1AI CDK19 SNP Missense_Mutation 6 110948277 C T 32 95 BRCA TCGA-AR-A1AI RFX6 SNP Missense_Mutation 6 117252535 T C 51 90 BRCA TCGA-AR-A1AI COL12A1 SNP Missense_Mutation 6 75893090 T G 52 93 BRCA TCGA-AR-A1AI UFL1 SNP Missense_Mutation 6 97001226 G C 33 66 BRCA TCGA-AR-A1AI RAMP3 DEL Frame_Shift_Del 7 45222967 G - 47 61 BRCA TCGA-AR-A1AI COL1A2 SNP Silent 7 94056944 C A 22 53 BRCA TCGA-AR-A1AI DYNC1I1 SNP Missense_Mutation 7 95668673 C A 20 69 BRCA TCGA-AR-A1AI MSR1 DEL Frame_Shift_Del 8 16007748 C - 30 73 BRCA TCGA-AR-A1AI PRDM14 SNP Silent 8 70980489 G A 40 45 BRCA TCGA-AR-A1AI OSR2 SNP Missense_Mutation 8 99963751 C T 32 100 BRCA TCGA-AR-A1AI TTC39B DEL Splice_site 9 15210087 T - 56 65 BRCA TCGA-AR-A1AI TRPM6 SNP Missense_Mutation 9 77455078 G A 42 100 BRCA TCGA-AR-A1AJ FLG SNP Missense_Mutation 1 152282321 G A 48 68 BRCA TCGA-AR-A1AJ MMEL1 SNP Silent 1 2535380 G A 45 53 BRCA TCGA-AR-A1AJ C10orf71 SNP Missense_Mutation 10 50533921 G A 41 66 BRCA TCGA-AR-A1AJ PTEN SNP Missense_Mutation 10 89624254 A C 15 85 BRCA TCGA-AR-A1AJ WT1 SNP Silent 11 32450119 C T 27 51 BRCA TCGA-AR-A1AJ IGHV3-6 SNP Silent 14 106320472 G A 39 40 BRCA TCGA-AR-A1AJ HERC2 SNP Missense_Mutation 15 28493757 C T 19 80 BRCA TCGA-AR-A1AJ BAIAP3 SNP Missense_Mutation 16 1394995 C T 19 63 BRCA TCGA-AR-A1AJ RBFOX1 SNP Silent 16 7383011 G A 40 54 BRCA TCGA-AR-A1AJ SARM1 DEL Frame_Shift_Del 17 26712099 T - 53 92 BRCA TCGA-AR-A1AJ SARM1 DEL Frame_Shift_Del 17 26712101 T - 52 51 BRCA TCGA-AR-A1AJ EFCAB3 SNP Missense_Mutation 17 60464771 A G 4 49 BRCA TCGA-AR-A1AJ TP53 SNP Missense_Mutation 17 7577120 C T 19 94 BRCA TCGA-AR-A1AJ ARHGEF15 SNP Missense_Mutation 17 8215645 C G 25 51 BRCA TCGA-AR-A1AJ MIB1 SNP Missense_Mutation 18 19371349 C T 24 100 BRCA TCGA-AR-A1AJ ZNF724P SNP Missense_Mutation 19 23406559 T C 51 62 BRCA TCGA-AR-A1AJ KCNQ2 SNP Missense_Mutation 20 62065186 C T 31 74 BRCA TCGA-AR-A1AJ PWP2 SNP Missense_Mutation 21 45545915 G A 45 81 BRCA TCGA-AR-A1AJ LOC727838 SNP Silent 23 118207956 C T 23 51 BRCA TCGA-AR-A1AJ DCAF8L1 SNP Missense_Mutation 23 27999024 A T 4 69 BRCA TCGA-AR-A1AJ P4HTM SNP Missense_Mutation 3 49038967 A C 11 77 BRCA TCGA-AR-A1AJ WWC2 SNP Missense_Mutation 4 184182178 G A 37 98 BRCA TCGA-AR-A1AJ TCF7 SNP Missense_Mutation 5 133478723 G A 45 98 BRCA TCGA-AR-A1AJ DNAH5 SNP Silent 5 13735415 C T 31 40 BRCA TCGA-AR-A1AJ LOC100131573 SNP Missense_Mutation 5 93928495 T G 53 58 BRCA TCGA-AR-A1AJ HSP90AB1 DEL In_Frame_Del 6 44219919 AGA - 11 89 BRCA TCGA-AR-A1AJ SDK1 SNP Missense_Mutation 7 4091315 A G 6 76 BRCA TCGA-AR-A1AJ SDCCAG3 SNP Missense_Mutation 9 139301619 G C 40 68 BRCA TCGA-AR-A1AK TRIM45 SNP Missense_Mutation 1 117663630 C G 31 68 BRCA TCGA-AR-A1AK RAB13 SNP Missense_Mutation 1 153954902 G A 39 57 BRCA TCGA-AR-A1AK CFHR4 SNP Missense_Mutation 1 196871653 A G 14 44 BRCA TCGA-AR-A1AK SLC30A10 SNP Missense_Mutation 1 220089147 C G 32 61 BRCA TCGA-AR-A1AK CTH SNP Nonsense_Mutation 1 70897810 C T 31 66 BRCA TCGA-AR-A1AK AKR1C1 SNP Missense_Mutation 10 5010513 G A 36 13 BRCA TCGA-AR-A1AK SEC24C SNP Silent 10 75528883 C T 29 50 BRCA TCGA-AR-A1AK SEC24C SNP Nonsense_Mutation 10 75530080 C T 31 68 BRCA TCGA-AR-A1AK SEC24C SNP Missense_Mutation 10 75530798 C T 32 100 BRCA TCGA-AR-A1AK C10orf12 SNP Missense_Mutation 10 98744191 G A 40 69 BRCA TCGA-AR-A1AK TRIM49B SNP Missense_Mutation 11 49053416 G A 45 54 BRCA TCGA-AR-A1AK DNHD1 SNP Silent 11 6519529 C G 32 55 BRCA TCGA-AR-A1AK PC SNP Nonsense_Mutation 11 66617203 G T 45 79 BRCA TCGA-AR-A1AK WEE1 SNP Missense_Mutation 11 9598152 G A 41 100 BRCA TCGA-AR-A1AK COQ10A SNP Missense_Mutation 12 56663001 C T 32 97 BRCA TCGA-AR-A1AK ARHGAP9 SNP Missense_Mutation 12 57872994 G A 40 57 BRCA TCGA-AR-A1AK SPATA13 SNP Missense_Mutation 13 24798398 C G 30 66 BRCA TCGA-AR-A1AK B3GALTL SNP Silent 13 31897924 C T 31 45 BRCA TCGA-AR-A1AK LRRC16B SNP Missense_Mutation 14 24532005 C T 23 64 BRCA TCGA-AR-A1AK SYNE2 SNP Missense_Mutation 14 64540727 C A 20 56 BRCA TCGA-AR-A1AK UBE3A SNP Missense_Mutation 15 25616325 C G 32 71 BRCA TCGA-AR-A1AK HCN4 SNP Missense_Mutation 15 73615867 G A 41 89 BRCA TCGA-AR-A1AK TMC7 SNP Missense_Mutation 16 19020581 G A 35 51 BRCA TCGA-AR-A1AK SRCAP SNP Missense_Mutation 16 30732773 C T 30 98 BRCA TCGA-AR-A1AK ELAC2 SNP Missense_Mutation 17 12903496 G A 38 47 BRCA TCGA-AR-A1AK DLX3 SNP Silent 17 48070938 C T 28 75 BRCA TCGA-AR-A1AK COIL SNP Nonsense_Mutation 17 55038347 G A 45 61 BRCA TCGA-AR-A1AK ST6GALNAC2 SNP Missense_Mutation 17 74566725 G A 45 57 BRCA TCGA-AR-A1AK GREB1L SNP Silent 18 19085428 C T 31 54 BRCA TCGA-AR-A1AK COL5A3 SNP Missense_Mutation 19 10114309 C T 22 71 BRCA TCGA-AR-A1AK JAK3 SNP Missense_Mutation 19 17945508 C T 23 50 BRCA TCGA-AR-A1AK CCDC138 SNP Missense_Mutation 2 109473397 A T 12 78 BRCA TCGA-AR-A1AK RABL2A SNP Missense_Mutation 2 114392640 C T 19 90 BRCA TCGA-AR-A1AK ARHGEF4 SNP Missense_Mutation 2 131704164 C T 19 47 BRCA TCGA-AR-A1AK LY75-CD302 SNP Missense_Mutation 2 160714934 A T 13 48 BRCA TCGA-AR-A1AK FAP SNP Missense_Mutation 2 163044844 C G 24 53 BRCA TCGA-AR-A1AK TTN SNP Missense_Mutation 2 179600355 C A 32 80 BRCA TCGA-AR-A1AK MYT1L SNP Missense_Mutation 2 1926197 C A 29 87 BRCA TCGA-AR-A1AK WDFY1 SNP Missense_Mutation 2 224782704 C T 32 91 BRCA TCGA-AR-A1AK SUN5 SNP Missense_Mutation 20 31573550 C A 19 73 BRCA TCGA-AR-A1AK XBP1 INS Frame_Shift_Ins 22 29191587 - G 3 73 BRCA TCGA-AR-A1AK MAOA SNP Missense_Mutation 23 43590602 A G 8 62 BRCA TCGA-AR-A1AK MAOB SNP Missense_Mutation 23 43698178 G T 42 95 BRCA TCGA-AR-A1AK HEPH SNP Silent 23 65427137 C A 31 54 BRCA TCGA-AR-A1AK PLA1A SNP Missense_Mutation 3 119327774 C T 24 52 BRCA TCGA-AR-A1AK ZNF660 SNP Nonsense_Mutation 3 44636310 C T 29 55 BRCA TCGA-AR-A1AK IQCF3 SNP Silent 3 51864469 G A 33 57 BRCA TCGA-AR-A1AK FHDC1 SNP Missense_Mutation 4 153889196 G C 33 94 BRCA TCGA-AR-A1AK PAICS SNP Silent 4 57314718 G T 47 65 BRCA TCGA-AR-A1AK CTNNA1 SNP Silent 5 138117646 C T 29 69 BRCA TCGA-AR-A1AK PCDHB7 SNP Missense_Mutation 5 140552846 G C 33 95 BRCA TCGA-AR-A1AK TRIO SNP Missense_Mutation 5 14472760 T C 59 92 BRCA TCGA-AR-A1AK ZNF131 SNP Silent 5 43175004 G A 43 63 BRCA TCGA-AR-A1AK AIM1 SNP Missense_Mutation 6 106991455 G C 45 59 BRCA TCGA-AR-A1AK GCM2 SNP Nonsense_Mutation 6 10876743 G A 37 77 BRCA TCGA-AR-A1AK LPA SNP Splice_Site 6 160968970 C T 32 63 BRCA TCGA-AR-A1AK WNT2 SNP Missense_Mutation 7 116955280 C T 27 51 BRCA TCGA-AR-A1AK NOD1 SNP Missense_Mutation 7 30496531 C G 32 52 BRCA TCGA-AR-A1AK MTSS1 SNP Missense_Mutation 8 125565583 G A 38 51 BRCA TCGA-AR-A1AK TNKS SNP Silent 8 9619112 C A 29 60 BRCA TCGA-AR-A1AK C9orf163 SNP Silent 9 139379395 C T 29 53 BRCA TCGA-AR-A1AL TSPAN2 SNP Silent 1 115615557 T C 55 51 BRCA TCGA-AR-A1AL C4BPA SNP Missense_Mutation 1 207288784 G C 33 65 BRCA TCGA-AR-A1AL ARF1 SNP Missense_Mutation 1 228285614 G A 38 100 BRCA TCGA-AR-A1AL AHCTF1 SNP Missense_Mutation 1 247063726 T G 52 89 BRCA TCGA-AR-A1AL CALHM2 SNP Missense_Mutation 10 105207117 G A 38 70 BRCA TCGA-AR-A1AL SORBS1 SNP Silent 10 97174350 C A 27 43 BRCA TCGA-AR-A1AL IFT46 SNP Missense_Mutation 11 118425295 C T 19 84 BRCA TCGA-AR-A1AL MTERFD3 SNP Silent 12 107372349 T C 55 42 BRCA TCGA-AR-A1AL KRAS SNP Missense_Mutation 12 25398285 C A 21 99 BRCA TCGA-AR-A1AL PROSER1 SNP Missense_Mutation 13 39587543 G A 41 93 BRCA TCGA-AR-A1AL DLL4 SNP Missense_Mutation 15 41227207 C T 23 56 BRCA TCGA-AR-A1AL TNRC6A SNP Missense_Mutation 16 24833445 G A 48 100 BRCA TCGA-AR-A1AL RPGRIP1L SNP Missense_Mutation 16 53691373 C G 32 93 BRCA TCGA-AR-A1AL CDH1 DEL Frame_Shift_Del 16 68849608 A - 9 54 BRCA TCGA-AR-A1AL ARHGAP28 SNP Silent 18 6837323 G A 33 60 BRCA TCGA-AR-A1AL MOGS SNP Missense_Mutation 2 74689879 T C 52 49 BRCA TCGA-AR-A1AL TAF1 SNP Missense_Mutation 23 70602701 G A 47 75 BRCA TCGA-AR-A1AL PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-AR-A1AL GIN1 SNP Missense_Mutation 5 102432415 T A 64 78 BRCA TCGA-AR-A1AL HIVEP1 SNP Missense_Mutation 6 12163882 T C 58 41 BRCA TCGA-AR-A1AL ETV1 SNP Missense_Mutation 7 13940377 C T 24 100 BRCA TCGA-AR-A1AL ENG SNP Silent 9 130580642 T C 51 47 BRCA TCGA-AR-A1AL TOR1A SNP Missense_Mutation 9 132576329 G T 41 69 BRCA TCGA-AR-A1AL GPSM1 SNP Silent 9 139229081 C T 19 53 BRCA TCGA-AR-A1AN ATF3 SNP Missense_Mutation 1 212792849 G C 33 57 BRCA TCGA-AR-A1AN CCDC24 SNP Missense_Mutation 1 44458238 C T 25 74 BRCA TCGA-AR-A1AN COL24A1 SNP Missense_Mutation 1 86591291 C T 27 48 BRCA TCGA-AR-A1AN DNAJC1 SNP Nonsense_Mutation 10 22217445 G A 40 57 BRCA TCGA-AR-A1AN POU2F3 SNP Silent 11 120180259 C T 21 52 BRCA TCGA-AR-A1AN PRCP SNP Missense_Mutation 11 82561013 G A 48 45 BRCA TCGA-AR-A1AN WWP2 SNP Missense_Mutation 16 69832690 G A 38 79 BRCA TCGA-AR-A1AN TP53 DEL Frame_Shift_Del 17 7579359 G - 39 49 BRCA TCGA-AR-A1AN PPAN SNP Missense_Mutation 19 10221623 C G 24 51 BRCA TCGA-AR-A1AN UNC13A SNP Missense_Mutation 19 17760329 C T 19 92 BRCA TCGA-AR-A1AN TSHZ3 SNP Missense_Mutation 19 31770592 G A 40 62 BRCA TCGA-AR-A1AN ATP4A SNP Splice_Site 19 36054519 C T 19 62 BRCA TCGA-AR-A1AN RUNX1 SNP Missense_Mutation 21 36252880 A G 11 92 BRCA TCGA-AR-A1AN BCORL1 SNP Missense_Mutation 23 129189983 G A 37 91 BRCA TCGA-AR-A1AN HCFC1 SNP Missense_Mutation 23 153219074 G A 39 98 BRCA TCGA-AR-A1AN MAGEB16 SNP Silent 23 35820757 G A 33 45 BRCA TCGA-AR-A1AN TSR2 SNP Missense_Mutation 23 54470525 C G 29 80 BRCA TCGA-AR-A1AN MAGEE2 SNP Missense_Mutation 23 75004102 G C 48 55 BRCA TCGA-AR-A1AN GRM6 SNP Missense_Mutation 5 178415975 G A 38 72 BRCA TCGA-AR-A1AN HCN1 SNP Silent 5 45262056 G A 40 45 BRCA TCGA-AR-A1AN OR2A1 SNP Silent 7 144015463 G A 37 47 BRCA TCGA-AR-A1AN MPDZ SNP Missense_Mutation 9 13224396 G C 45 82 BRCA TCGA-AR-A1AO CEP170 SNP Silent 1 243349521 C G 32 83 BRCA TCGA-AR-A1AO ERP29 SNP Silent 12 112460210 C G 32 51 BRCA TCGA-AR-A1AO C14orf102 SNP Silent 14 90754814 G A 34 94 BRCA TCGA-AR-A1AO ENSG00000214896 SNP Missense_Mutation 15 53178012 T C 49 53 BRCA TCGA-AR-A1AO SLC24A1 SNP Missense_Mutation 15 65918127 T G 49 65 BRCA TCGA-AR-A1AO CYP1A1 SNP Silent 15 75015349 T C 58 49 BRCA TCGA-AR-A1AO GRIN2D SNP Missense_Mutation 19 48945508 G A 40 94 BRCA TCGA-AR-A1AO SH2D3A SNP Missense_Mutation 19 6754155 G A 40 89 BRCA TCGA-AR-A1AO COL6A5 SNP Missense_Mutation 3 130150403 C G 29 67 BRCA TCGA-AR-A1AO ENSG00000229429 SNP Missense_Mutation 7 99808811 G A 45 57 BRCA TCGA-AR-A1AP FLG SNP Missense_Mutation 1 152285017 C T 23 45 BRCA TCGA-AR-A1AP PDZD7 SNP Missense_Mutation 10 102777873 C T 27 40 BRCA TCGA-AR-A1AP CPXM2 SNP Missense_Mutation 10 125650959 G T 43 52 BRCA TCGA-AR-A1AP GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-AR-A1AP ANKRD13D SNP Missense_Mutation 11 67066581 G A 39 98 BRCA TCGA-AR-A1AP ARHGEF17 SNP Silent 11 73020826 G T 47 57 BRCA TCGA-AR-A1AP PRB2 SNP Missense_Mutation 12 11546473 G A 47 46 BRCA TCGA-AR-A1AP COL4A1 SNP Missense_Mutation 13 110826988 C T 23 98 BRCA TCGA-AR-A1AP SPERT SNP Missense_Mutation 13 46287926 G A 38 65 BRCA TCGA-AR-A1AP MMP14 SNP Missense_Mutation 14 23314527 G A 41 60 BRCA TCGA-AR-A1AP C14orf37 SNP Missense_Mutation 14 58605863 C T 29 62 BRCA TCGA-AR-A1AP LOC100288601 SNP Missense_Mutation 15 30896450 C T 32 51 BRCA TCGA-AR-A1AP RAI1 SNP Missense_Mutation 17 17696987 C T 23 94 BRCA TCGA-AR-A1AP SLFN11 SNP Missense_Mutation 17 33689955 C T 27 44 BRCA TCGA-AR-A1AP DHX58 SNP Missense_Mutation 17 40257115 G A 38 75 BRCA TCGA-AR-A1AP MPO SNP Missense_Mutation 17 56355208 C T 27 58 BRCA TCGA-AR-A1AP CSH1 SNP Missense_Mutation 17 61972940 G A 38 58 BRCA TCGA-AR-A1AP TP53 SNP Nonsense_Mutation 17 7578263 G A 39 67 BRCA TCGA-AR-A1AP ZNF726 SNP Missense_Mutation 19 24115276 G T 48 57 BRCA TCGA-AR-A1AP URI1 SNP Silent 19 30505832 A G 6 44 BRCA TCGA-AR-A1AP MAP4K1 SNP Missense_Mutation 19 39098654 C T 31 40 BRCA TCGA-AR-A1AP SCN7A SNP Splice_site 2 167330310 C G 32 57 BRCA TCGA-AR-A1AP AQP12A SNP Missense_Mutation 2 241633892 C A 26 66 BRCA TCGA-AR-A1AP C20orf26 SNP Missense_Mutation 20 20150064 G A 37 50 BRCA TCGA-AR-A1AP TOX2 SNP Missense_Mutation 20 42683009 A T 3 90 BRCA TCGA-AR-A1AP CLIC6 SNP Silent 21 36042890 G A 35 52 BRCA TCGA-AR-A1AP SAT1 SNP Missense_Mutation 23 23803899 C A 32 83 BRCA TCGA-AR-A1AP GPR128 SNP Missense_Mutation 3 100378672 A G 2 64 BRCA TCGA-AR-A1AP DZIP3 SNP Missense_Mutation 3 108335487 C G 29 73 BRCA TCGA-AR-A1AP TGFBR2 SNP Missense_Mutation 3 30729932 G A 37 100 BRCA TCGA-AR-A1AP TMPPE SNP Silent 3 33135082 G C 35 41 BRCA TCGA-AR-A1AP GLYCTK SNP Missense_Mutation 3 52326415 G A 40 61 BRCA TCGA-AR-A1AP STX19 SNP Missense_Mutation 3 93733513 C T 32 96 BRCA TCGA-AR-A1AP ODZ3 SNP Missense_Mutation 4 183713590 C T 26 99 BRCA TCGA-AR-A1AP SNX25 SNP Missense_Mutation 4 186188240 C T 26 95 BRCA TCGA-AR-A1AP KIAA1239 SNP Missense_Mutation 4 37446793 C G 29 69 BRCA TCGA-AR-A1AP NOX3 SNP Silent 6 155761188 C T 19 40 BRCA TCGA-AR-A1AP KIAA1324L SNP Missense_Mutation 7 86537023 G A 41 93 BRCA TCGA-AR-A1AP TG SNP Silent 8 133882025 C T 19 34 BRCA TCGA-AR-A1AQ SPTA1 SNP Missense_Mutation 1 158615165 G A 34 54 BRCA TCGA-AR-A1AQ C1orf192 INS Splice_Site 1 161337629 - A 61 63 BRCA TCGA-AR-A1AQ PLD5 SNP Splice_site 1 242287770 C T 23 80 BRCA TCGA-AR-A1AQ IPO13 SNP Silent 1 44413299 G T 43 53 BRCA TCGA-AR-A1AQ LRRC41 DEL Frame_Shift_Del 1 46746855 A - 7 51 BRCA TCGA-AR-A1AQ PARD3 SNP Missense_Mutation 10 34400454 G C 36 49 BRCA TCGA-AR-A1AQ AASDHPPT SNP Missense_Mutation 11 105948464 C G 28 51 BRCA TCGA-AR-A1AQ ABCC8 SNP Missense_Mutation 11 17498260 G A 35 81 BRCA TCGA-AR-A1AQ STIM1 SNP Missense_Mutation 11 4091418 A G 8 74 BRCA TCGA-AR-A1AQ OR51C1P SNP Missense_Mutation 11 4712725 C T 27 51 BRCA TCGA-AR-A1AQ AP5B1 DEL Frame_Shift_Del 11 65545388 TCGG - 50 61 BRCA TCGA-AR-A1AQ LIPT2 SNP Silent 11 74203306 T G 55 51 BRCA TCGA-AR-A1AQ ATN1 SNP Missense_Mutation 12 7048007 C T 17 80 BRCA TCGA-AR-A1AQ FLT1 SNP Missense_Mutation 13 28896410 A G 10 72 BRCA TCGA-AR-A1AQ RB1 SNP Nonsense_Mutation 13 48934189 C G 29 83 BRCA TCGA-AR-A1AQ ATG2B SNP Missense_Mutation 14 96779679 C A 25 81 BRCA TCGA-AR-A1AQ CCPG1 SNP Missense_Mutation 15 55681620 C G 17 78 BRCA TCGA-AR-A1AQ CORO7 SNP Silent 16 4458194 C A 23 30 BRCA TCGA-AR-A1AQ WWP2 DEL Frame_Shift_Del 16 69972999 C - 26 99 BRCA TCGA-AR-A1AQ FLII SNP Missense_Mutation 17 18155040 A C 7 91 BRCA TCGA-AR-A1AQ MYO18A SNP Missense_Mutation 17 27401792 G A 46 64 BRCA TCGA-AR-A1AQ TP53 DEL Frame_Shift_Del 17 7574003 G - 39 57 BRCA TCGA-AR-A1AQ GREB1L SNP Missense_Mutation 18 19102675 C T 23 98 BRCA TCGA-AR-A1AQ DCC SNP Missense_Mutation 18 50985621 G A 46 68 BRCA TCGA-AR-A1AQ S1PR2 SNP Silent 19 10334727 G A 39 32 BRCA TCGA-AR-A1AQ NWD1 SNP Missense_Mutation 19 16918910 T C 55 80 BRCA TCGA-AR-A1AQ ZNF726 SNP Missense_Mutation 19 24116016 G C 33 66 BRCA TCGA-AR-A1AQ PIP5K1C SNP Missense_Mutation 19 3643289 G A 41 90 BRCA TCGA-AR-A1AQ MUC16 SNP Silent 19 9074465 G A 45 49 BRCA TCGA-AR-A1AQ HOXD11 SNP Missense_Mutation 2 176973668 C A 22 100 BRCA TCGA-AR-A1AQ DNAH7 SNP Nonsense_Mutation 2 196749476 G A 37 80 BRCA TCGA-AR-A1AQ RNF144A SNP Missense_Mutation 2 7179763 G A 48 96 BRCA TCGA-AR-A1AQ PREX1 SNP Missense_Mutation 20 47296244 C T 27 97 BRCA TCGA-AR-A1AQ BACH1 SNP Missense_Mutation 21 30699407 C T 26 65 BRCA TCGA-AR-A1AQ GAB4 SNP Silent 22 17468927 C T 27 67 BRCA TCGA-AR-A1AQ ZBTB33 INS Frame_Shift_Ins 23 119389284 - TA 61 86 BRCA TCGA-AR-A1AQ FNIP1 SNP Missense_Mutation 5 131046309 C A 18 100 BRCA TCGA-AR-A1AQ SPDEF SNP Missense_Mutation 6 34506131 G A 39 100 BRCA TCGA-AR-A1AQ APOBEC2 INS Frame_Shift_Ins 6 41029366 - CC 2 66 BRCA TCGA-AR-A1AQ CNPY3 SNP Missense_Mutation 6 42906359 G C 35 70 BRCA TCGA-AR-A1AQ CUL9 SNP Missense_Mutation 6 43166502 C T 27 54 BRCA TCGA-AR-A1AQ SEMA3A SNP Missense_Mutation 7 83823815 G C 42 74 BRCA TCGA-AR-A1AQ KCNQ3 SNP Silent 8 133142049 C T 23 28 BRCA TCGA-AR-A1AQ LOC100288715 SNP Missense_Mutation 9 34552057 G A 47 50 BRCA TCGA-AR-A1AR ITGA10 SNP Missense_Mutation 1 145530929 G A 33 70 BRCA TCGA-AR-A1AR RPRD2 SNP Missense_Mutation 1 150430016 G T 33 96 BRCA TCGA-AR-A1AR FLG SNP Missense_Mutation 1 152286025 C G 32 47 BRCA TCGA-AR-A1AR UCK2 SNP Nonsense_Mutation 1 165875164 A T 9 73 BRCA TCGA-AR-A1AR LHX4 SNP Silent 1 180243387 C T 27 58 BRCA TCGA-AR-A1AR CENPF SNP Missense_Mutation 1 214803928 C A 21 80 BRCA TCGA-AR-A1AR GNPAT SNP Missense_Mutation 1 231403518 T G 63 88 BRCA TCGA-AR-A1AR OR14K1 SNP Missense_Mutation 1 247902857 G C 33 51 BRCA TCGA-AR-A1AR C1orf94 SNP Missense_Mutation 1 34663500 G A 35 63 BRCA TCGA-AR-A1AR CTNNA3 INS Frame_Shift_Ins 10 67726393 - T 22 83 BRCA TCGA-AR-A1AR CTNNA3 SNP Missense_Mutation 10 67726396 G T 35 55 BRCA TCGA-AR-A1AR ENSG00000181950 SNP Missense_Mutation 11 55234806 G A 46 84 BRCA TCGA-AR-A1AR OR5D18 SNP Missense_Mutation 11 55587494 C T 24 83 BRCA TCGA-AR-A1AR LRRK2 SNP Silent 12 40745430 T G 53 51 BRCA TCGA-AR-A1AR KLRF1 SNP Nonsense_Mutation 12 9985925 C T 21 56 BRCA TCGA-AR-A1AR LOC390424 SNP Nonsense_Mutation 13 107316046 A T 1 72 BRCA TCGA-AR-A1AR TDRD9 SNP Missense_Mutation 14 104484481 T C 54 70 BRCA TCGA-AR-A1AR BRF1 SNP Missense_Mutation 14 105683986 C T 24 51 BRCA TCGA-AR-A1AR DHRS2 SNP Missense_Mutation 14 24113663 A G 6 75 BRCA TCGA-AR-A1AR MDGA2 SNP Missense_Mutation 14 47324336 C T 19 77 BRCA TCGA-AR-A1AR PPL SNP Silent 16 4947726 G A 35 78 BRCA TCGA-AR-A1AR CALB2 SNP Missense_Mutation 16 71417313 A T 12 84 BRCA TCGA-AR-A1AR ENO3 SNP Missense_Mutation 17 4857133 C T 21 97 BRCA TCGA-AR-A1AR EVPL SNP Missense_Mutation 17 74017827 C A 32 56 BRCA TCGA-AR-A1AR RTN2 SNP Silent 19 45991899 A T 9 51 BRCA TCGA-AR-A1AR ZNF415 SNP Missense_Mutation 19 53612856 G A 47 47 BRCA TCGA-AR-A1AR TTYH1 SNP Silent 19 54937907 C T 30 55 BRCA TCGA-AR-A1AR TNNT1 SNP Missense_Mutation 19 55648534 A C 6 50 BRCA TCGA-AR-A1AR MYO1F SNP Silent 19 8601262 G A 39 35 BRCA TCGA-AR-A1AR BAZ2B SNP Splice_site 2 160181323 G A 48 98 BRCA TCGA-AR-A1AR ZFAND2B SNP Silent 2 220072393 T C 54 24 BRCA TCGA-AR-A1AR PTRHD1 SNP Missense_Mutation 2 25016138 G T 48 70 BRCA TCGA-AR-A1AR FSHR SNP Missense_Mutation 2 49190072 T C 57 91 BRCA TCGA-AR-A1AR TTC31 SNP Missense_Mutation 2 74719297 C G 32 55 BRCA TCGA-AR-A1AR FER1L5 SNP Missense_Mutation 2 97338872 T G 51 77 BRCA TCGA-AR-A1AR AMOT SNP Missense_Mutation 23 112065720 G T 48 60 BRCA TCGA-AR-A1AR SSX5 SNP Missense_Mutation 23 48049613 G T 43 42 BRCA TCGA-AR-A1AR TFE3 SNP Missense_Mutation 23 48887874 T A 58 75 BRCA TCGA-AR-A1AR RRAGB DEL Frame_Shift_Del 23 55757917 T - 52 60 BRCA TCGA-AR-A1AR HDX SNP Missense_Mutation 23 83581199 T G 56 77 BRCA TCGA-AR-A1AR COL6A6 SNP Missense_Mutation 3 130300437 G T 48 56 BRCA TCGA-AR-A1AR CLSTN2 SNP Missense_Mutation 3 140122483 C T 27 70 BRCA TCGA-AR-A1AR KNG1 SNP Missense_Mutation 3 186450435 T C 52 62 BRCA TCGA-AR-A1AR KIAA0226 SNP Missense_Mutation 3 197444928 C T 19 99 BRCA TCGA-AR-A1AR CMTM7 SNP Silent 3 32490993 C T 21 62 BRCA TCGA-AR-A1AR ITIH4 SNP Missense_Mutation 3 52860882 C A 28 66 BRCA TCGA-AR-A1AR CLDND1 SNP Splice_Site 3 98217028 C T 32 61 BRCA TCGA-AR-A1AR CLCN3 SNP Splice_Site 4 170557240 G T 44 92 BRCA TCGA-AR-A1AR PCDHA13 SNP Silent 5 140263908 C T 27 48 BRCA TCGA-AR-A1AR NPR3 SNP Missense_Mutation 5 32724819 C T 27 81 BRCA TCGA-AR-A1AR SLC22A16 SNP Missense_Mutation 6 110778014 G A 40 53 BRCA TCGA-AR-A1AR TINAG SNP Nonsense_Mutation 6 54254622 G T 33 85 BRCA TCGA-AR-A1AR SNRNP48 SNP Missense_Mutation 6 7609080 C T 29 62 BRCA TCGA-AR-A1AR PTPRZ1 SNP Silent 7 121624110 G A 36 61 BRCA TCGA-AR-A1AR TAX1BP1 SNP Missense_Mutation 7 27833979 A T 4 47 BRCA TCGA-AR-A1AR LRSAM1 SNP Missense_Mutation 9 130263396 G C 33 79 BRCA TCGA-AR-A1AS SPRR2B SNP Nonsense_Mutation 1 153043220 G T 42 46 BRCA TCGA-AR-A1AS SPTA1 DEL In_Frame_Del 1 158605731 CCC - 30 65 BRCA TCGA-AR-A1AS SPTA1 DEL In_Frame_Del 1 158605735 GTGTTCAAC - 36 51 BRCA TCGA-AR-A1AS C1orf111 SNP Silent 1 162343895 G A 45 66 BRCA TCGA-AR-A1AS GLRX2 SNP Splice_site 1 193065756 C G 29 58 BRCA TCGA-AR-A1AS ZC3H11A SNP Missense_Mutation 1 203819082 G A 33 79 BRCA TCGA-AR-A1AS RYR2 SNP Missense_Mutation 1 237632461 G T 33 93 BRCA TCGA-AR-A1AS LOC729806 DEL Frame_Shift_Del 1 247353721 T - 60 47 BRCA TCGA-AR-A1AS WRAP73 SNP Missense_Mutation 1 3566551 C T 31 80 BRCA TCGA-AR-A1AS SLC6A9 SNP Missense_Mutation 1 44468079 C A 29 100 BRCA TCGA-AR-A1AS FUOM SNP Silent 10 135170746 C T 29 43 BRCA TCGA-AR-A1AS GATA3 SNP Silent 10 8100440 C G 24 48 BRCA TCGA-AR-A1AS MYOF DEL Frame_Shift_Del 10 95137179 TTTG - 52 75 BRCA TCGA-AR-A1AS MUC15 SNP Silent 11 26582735 C T 29 49 BRCA TCGA-AR-A1AS CNGA4 SNP Missense_Mutation 11 6261794 G A 44 72 BRCA TCGA-AR-A1AS KRAS SNP Missense_Mutation 12 25398284 C A 18 99 BRCA TCGA-AR-A1AS IRAK3 SNP Silent 12 66638269 A C 5 50 BRCA TCGA-AR-A1AS POTEG SNP Missense_Mutation 14 19553451 C T 30 54 BRCA TCGA-AR-A1AS LRFN5 SNP Silent 14 42360996 G A 33 64 BRCA TCGA-AR-A1AS LARP6 SNP Missense_Mutation 15 71128708 C T 27 79 BRCA TCGA-AR-A1AS LCAT SNP Missense_Mutation 16 67977911 A T 3 84 BRCA TCGA-AR-A1AS MAP2K4 SNP Missense_Mutation 17 12016634 C T 32 94 BRCA TCGA-AR-A1AS TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-AR-A1AS EIF4A3 SNP Missense_Mutation 17 78110120 G C 33 88 BRCA TCGA-AR-A1AS CARD14 SNP Nonsense_Mutation 17 78156478 C T 31 83 BRCA TCGA-AR-A1AS MAPK4 SNP Missense_Mutation 18 48255652 C T 27 85 BRCA TCGA-AR-A1AS TXNDC2 SNP Missense_Mutation 18 9887689 C T 22 53 BRCA TCGA-AR-A1AS TOMM40 SNP Silent 19 45406420 C T 31 46 BRCA TCGA-AR-A1AS TTN SNP Missense_Mutation 2 179427821 C T 29 89 BRCA TCGA-AR-A1AS COL6A3 DEL Splice_Site 2 238243265 TTACTT - 56 62 BRCA TCGA-AR-A1AS BCL11A SNP Missense_Mutation 2 60687616 C T 19 100 BRCA TCGA-AR-A1AS EYA2 SNP Silent 20 45801427 G A 46 42 BRCA TCGA-AR-A1AS HMGN5 SNP Missense_Mutation 23 80370668 T G 62 55 BRCA TCGA-AR-A1AS PIK3CA SNP Missense_Mutation 3 178936092 A C 11 90 BRCA TCGA-AR-A1AS RBM6 SNP Missense_Mutation 3 50095901 A G 16 67 BRCA TCGA-AR-A1AS ZAR1 SNP Silent 4 48492353 G A 39 50 BRCA TCGA-AR-A1AS PCDHA4 SNP Silent 5 140187112 C T 28 60 BRCA TCGA-AR-A1AS ATP10B SNP Missense_Mutation 5 160097495 C T 17 59 BRCA TCGA-AR-A1AS GOLPH3 SNP Missense_Mutation 5 32143957 T C 49 59 BRCA TCGA-AR-A1AS PLXNA4 SNP Missense_Mutation 7 131848926 C T 27 100 BRCA TCGA-AR-A1AS EPHB6 SNP Silent 7 142568630 G A 45 67 BRCA TCGA-AR-A1AS GIMAP4 SNP Missense_Mutation 7 150269546 G A 33 86 BRCA TCGA-AR-A1AT EPS15 SNP Missense_Mutation 1 51864825 C A 18 85 BRCA TCGA-AR-A1AT ZNF239 SNP Missense_Mutation 10 44052156 G A 37 42 BRCA TCGA-AR-A1AT DNTT SNP Silent 10 98092128 C T 18 64 BRCA TCGA-AR-A1AT MLL SNP Silent 11 118354912 G A 39 39 BRCA TCGA-AR-A1AT SPTY2D1 SNP Missense_Mutation 11 18637556 T C 58 90 BRCA TCGA-AR-A1AT CDC42BPG SNP Missense_Mutation 11 64591956 T G 54 51 BRCA TCGA-AR-A1AT PUS7L SNP Missense_Mutation 12 44130339 G A 47 79 BRCA TCGA-AR-A1AT TDRD9 SNP Missense_Mutation 14 104492006 C T 26 52 BRCA TCGA-AR-A1AT SERPINA1 DEL Frame_Shift_Del 14 94847276 T - 60 43 BRCA TCGA-AR-A1AT PLCB2 SNP Missense_Mutation 15 40590117 G A 43 61 BRCA TCGA-AR-A1AT FAM214A SNP Missense_Mutation 15 52901580 G C 46 56 BRCA TCGA-AR-A1AT SKOR1 SNP Missense_Mutation 15 68118648 G A 38 95 BRCA TCGA-AR-A1AT TNRC6A SNP Silent 16 24801088 C T 17 83 BRCA TCGA-AR-A1AT MAPK3 SNP Silent 16 30129736 G A 39 30 BRCA TCGA-AR-A1AT ZNF296 SNP Missense_Mutation 19 45574978 C A 23 58 BRCA TCGA-AR-A1AT MUC16 SNP Silent 19 9085518 A G 7 52 BRCA TCGA-AR-A1AT TTN SNP Missense_Mutation 2 179592332 G C 36 69 BRCA TCGA-AR-A1AT STARD7 SNP Missense_Mutation 2 96861224 C G 28 54 BRCA TCGA-AR-A1AT RUNX1 DEL Frame_Shift_Del 21 36259157 G - 35 69 BRCA TCGA-AR-A1AT RFPL1 SNP Missense_Mutation 22 29837624 G A 39 47 BRCA TCGA-AR-A1AT MYH9 DEL Frame_Shift_Del 22 36695005 C - 28 54 BRCA TCGA-AR-A1AT RXFP3 SNP Missense_Mutation 5 33937522 C T 27 58 BRCA TCGA-AR-A1AT FOXK1 SNP Missense_Mutation 7 4780597 C T 23 98 BRCA TCGA-AR-A1AT GOT1L1 SNP Silent 8 37792595 G A 45 60 BRCA TCGA-AR-A1AT SNX16 DEL Splice_Site 8 82751846 C - 17 85 BRCA TCGA-AR-A1AT MAMDC2 SNP Silent 9 72727930 T C 50 47 BRCA TCGA-AR-A1AU E2F2 SNP Silent 1 23847527 C T 30 78 BRCA TCGA-AR-A1AU MYOM3 SNP Missense_Mutation 1 24390618 G A 38 69 BRCA TCGA-AR-A1AU PDCD11 SNP Missense_Mutation 10 105200238 A T 7 57 BRCA TCGA-AR-A1AU ZNF511 SNP Missense_Mutation 10 135125374 G A 40 51 BRCA TCGA-AR-A1AU RPP30 SNP Silent 10 92656100 C T 19 56 BRCA TCGA-AR-A1AU SLC25A22 SNP Silent 11 793561 G A 40 51 BRCA TCGA-AR-A1AU COL2A1 SNP Splice_Site 12 48370883 A C 6 90 BRCA TCGA-AR-A1AU TUBGCP5 SNP Missense_Mutation 15 22866738 G A 48 54 BRCA TCGA-AR-A1AU ENSG00000234719 SNP Missense_Mutation 16 12021477 G A 38 51 BRCA TCGA-AR-A1AU PLA2G15 SNP Missense_Mutation 16 68293055 A G 2 91 BRCA TCGA-AR-A1AU MAP2K4 INS Frame_Shift_Ins 17 12032570 - TC 52 90 BRCA TCGA-AR-A1AU LLGL1 SNP Silent 17 18145296 C T 27 8 BRCA TCGA-AR-A1AU UNC45B SNP Missense_Mutation 17 33504550 G A 41 60 BRCA TCGA-AR-A1AU GPS2 SNP Nonsense_Mutation 17 7217447 G A 47 79 BRCA TCGA-AR-A1AU NUMBL SNP Missense_Mutation 19 41183152 G C 43 17 BRCA TCGA-AR-A1AU SLC9C1 SNP Missense_Mutation 3 111901058 G C 45 66 BRCA TCGA-AR-A1AU FBXO40 SNP Missense_Mutation 3 121342188 G A 33 53 BRCA TCGA-AR-A1AU CACNA2D3 SNP Missense_Mutation 3 55107522 T C 59 87 BRCA TCGA-AR-A1AU PCDH12 SNP Missense_Mutation 5 141334577 T G 60 79 BRCA TCGA-AR-A1AU MLLT4 SNP Nonsense_Mutation 6 168289974 T G 61 86 BRCA TCGA-AR-A1AU NAPRT1 SNP Silent 8 144657391 T G 59 34 BRCA TCGA-AR-A1AV FAM40A SNP Missense_Mutation 1 110586328 G A 37 100 BRCA TCGA-AR-A1AV INSRR SNP Missense_Mutation 1 156813013 T C 50 85 BRCA TCGA-AR-A1AV EIF3I DEL Frame_Shift_Del 1 32694368 GG - 39 70 BRCA TCGA-AR-A1AV MIER1 DEL In_Frame_Del 1 67447566 AAG - 1 63 BRCA TCGA-AR-A1AV PARD3 SNP Missense_Mutation 10 34620159 G A 37 85 BRCA TCGA-AR-A1AV GATA3 DEL Frame_Shift_Del 10 8115973 CCGC - 18 100 BRCA TCGA-AR-A1AV EHD1 SNP Silent 11 64622048 C T 27 30 BRCA TCGA-AR-A1AV ANKLE2 SNP Missense_Mutation 12 133312082 T C 56 50 BRCA TCGA-AR-A1AV SLC2A3 SNP Missense_Mutation 12 8083112 G C 34 89 BRCA TCGA-AR-A1AV HTR2A SNP Missense_Mutation 13 47469795 C T 19 52 BRCA TCGA-AR-A1AV WDR20 SNP Missense_Mutation 14 102675094 G A 41 100 BRCA TCGA-AR-A1AV NEMF SNP Missense_Mutation 14 50298943 G A 47 70 BRCA TCGA-AR-A1AV DPP8 SNP Missense_Mutation 15 65792988 T G 53 81 BRCA TCGA-AR-A1AV MEFV SNP Missense_Mutation 16 3299561 C T 27 51 BRCA TCGA-AR-A1AV CPNE2 SNP Missense_Mutation 16 57180088 T C 51 92 BRCA TCGA-AR-A1AV NUTF2 SNP Missense_Mutation 16 67902441 C T 27 87 BRCA TCGA-AR-A1AV SEPT4 SNP Missense_Mutation 17 56603076 C T 23 95 BRCA TCGA-AR-A1AV TAF4B SNP Missense_Mutation 18 23915146 C G 32 72 BRCA TCGA-AR-A1AV ANKLE1 SNP Silent 19 17394278 G T 39 43 BRCA TCGA-AR-A1AV LOC100130518 SNP Missense_Mutation 19 22487564 G A 45 49 BRCA TCGA-AR-A1AV B3GNT7 SNP Missense_Mutation 2 232262638 G T 46 47 BRCA TCGA-AR-A1AV SIRPG SNP Missense_Mutation 20 1616960 G A 39 49 BRCA TCGA-AR-A1AV ADAMTS1 SNP Missense_Mutation 21 28212320 C T 23 97 BRCA TCGA-AR-A1AV GRIK1 SNP Missense_Mutation 21 31023532 T C 60 88 BRCA TCGA-AR-A1AV MED15 SNP Missense_Mutation 22 20937198 C T 19 73 BRCA TCGA-AR-A1AV IL12A DEL Frame_Shift_Del 3 159711616 TGATG - 63 46 BRCA TCGA-AR-A1AV PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-AR-A1AV RBMS3 SNP Silent 3 29781333 C T 19 49 BRCA TCGA-AR-A1AV PDZRN3 SNP Missense_Mutation 3 73432563 C T 30 100 BRCA TCGA-AR-A1AV SETD5 SNP Missense_Mutation 3 9490166 C A 25 98 BRCA TCGA-AR-A1AV LRBA SNP Missense_Mutation 4 151356833 A T 1 57 BRCA TCGA-AR-A1AV DCHS2 SNP Missense_Mutation 4 155157976 G A 41 60 BRCA TCGA-AR-A1AV PDGFRA SNP Missense_Mutation 4 55152033 G A 38 100 BRCA TCGA-AR-A1AV PRKG2 SNP Nonsense_Mutation 4 82125820 C A 29 89 BRCA TCGA-AR-A1AV C5orf62 SNP Silent 5 150158455 C T 30 52 BRCA TCGA-AR-A1AV VCAN SNP Nonsense_Mutation 5 82817939 G T 33 87 BRCA TCGA-AR-A1AV CDC40 SNP Silent 6 110550072 C T 32 61 BRCA TCGA-AR-A1AV TRDN SNP Missense_Mutation 6 123576256 C T 32 58 BRCA TCGA-AR-A1AV TULP4 SNP Silent 6 158834165 C T 31 45 BRCA TCGA-AR-A1AV HIST1H1B SNP Missense_Mutation 6 27835099 G A 38 86 BRCA TCGA-AR-A1AV BACH2 SNP Missense_Mutation 6 90660239 G A 38 96 BRCA TCGA-AR-A1AV MAGI2 DEL Frame_Shift_Del 7 78150872 CTTGGAGTGG - 20 67 BRCA TCGA-AR-A1AV EPB49 SNP Missense_Mutation 8 21931298 A T 12 62 BRCA TCGA-AR-A1AV DNAJB5 SNP Nonsense_Mutation 9 34990767 T G 61 72 BRCA TCGA-AR-A1AW MPZL1 SNP Nonsense_Mutation 1 167741689 C T 21 63 BRCA TCGA-AR-A1AW RASAL2 SNP Missense_Mutation 1 178411925 G A 40 100 BRCA TCGA-AR-A1AW SOCS4 SNP Missense_Mutation 14 55510028 C A 32 97 BRCA TCGA-AR-A1AW BCMO1 SNP Nonsense_Mutation 16 81303769 T A 49 56 BRCA TCGA-AR-A1AW NF1 SNP Missense_Mutation 17 29586058 G C 33 85 BRCA TCGA-AR-A1AW TP53 SNP Missense_Mutation 17 7577121 G A 38 65 BRCA TCGA-AR-A1AW LILRA1 SNP Missense_Mutation 19 55107152 C T 26 44 BRCA TCGA-AR-A1AW MUC16 SNP Silent 19 9007506 G A 43 51 BRCA TCGA-AR-A1AW GNAS SNP Missense_Mutation 20 57485019 A G 8 79 BRCA TCGA-AR-A1AW PHF6 SNP Missense_Mutation 23 133559244 A T 1 85 BRCA TCGA-AR-A1AW MAGEA11 SNP Silent 23 148798316 C G 22 56 BRCA TCGA-AR-A1AW PCDH19 SNP Missense_Mutation 23 99662740 G A 38 54 BRCA TCGA-AR-A1AW SYTL4 SNP Missense_Mutation 23 99936233 G A 39 54 BRCA TCGA-AR-A1AW PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-AR-A1AW TRANK1 SNP Missense_Mutation 3 36879889 C A 25 85 BRCA TCGA-AR-A1AW BRPF1 SNP Missense_Mutation 3 9783065 A C 11 93 BRCA TCGA-AR-A1AW ELOVL5 SNP Splice_Site 6 53156612 G A 35 69 BRCA TCGA-AR-A1AX KDM4A SNP Missense_Mutation 1 44137307 C T 24 67 BRCA TCGA-AR-A1AX CARD16 SNP Missense_Mutation 11 104915136 G A 40 42 BRCA TCGA-AR-A1AX SYNE2 SNP Missense_Mutation 14 64557671 A G 4 49 BRCA TCGA-AR-A1AX LOC100289074 SNP Missense_Mutation 17 81083247 G A 37 51 BRCA TCGA-AR-A1AX SLC1A6 SNP Missense_Mutation 19 15063812 A G 8 85 BRCA TCGA-AR-A1AX ZNF565 SNP Missense_Mutation 19 36673496 G A 37 60 BRCA TCGA-AR-A1AX PRKD2 SNP Missense_Mutation 19 47204110 T C 54 62 BRCA TCGA-AR-A1AX RGPD3 SNP Silent 2 107041128 G A 34 72 BRCA TCGA-AR-A1AX PHACTR3 SNP Missense_Mutation 20 58322833 G A 39 50 BRCA TCGA-AR-A1AX MAGIX SNP Silent 23 49021218 A T 8 33 BRCA TCGA-AR-A1AX PDCD6IP SNP Missense_Mutation 3 33855109 C T 32 99 BRCA TCGA-AR-A1AX APC SNP Missense_Mutation 5 112177283 G A 33 84 BRCA TCGA-AR-A1AX ARHGAP26 SNP Missense_Mutation 5 142150475 T C 54 78 BRCA TCGA-AR-A1AX HIATL2 SNP Splice_Site 9 99711835 A T 6 76 BRCA TCGA-AR-A1AY LELP1 SNP Missense_Mutation 1 153177464 G A 46 64 BRCA TCGA-AR-A1AY TOMM40L SNP Missense_Mutation 1 161198536 C G 17 84 BRCA TCGA-AR-A1AY DUSP27 SNP Missense_Mutation 1 167095632 G A 37 50 BRCA TCGA-AR-A1AY TOR1AIP2 SNP Missense_Mutation 1 179816677 C A 30 59 BRCA TCGA-AR-A1AY ZNF683 SNP Missense_Mutation 1 26694191 G T 33 70 BRCA TCGA-AR-A1AY SERINC2 SNP Missense_Mutation 1 31898637 G A 39 95 BRCA TCGA-AR-A1AY ABCD3 SNP Missense_Mutation 1 94953135 C T 29 100 BRCA TCGA-AR-A1AY PTPRE SNP Splice_Site 10 129839137 A T 7 71 BRCA TCGA-AR-A1AY VCL SNP Nonsense_Mutation 10 75854054 C T 31 80 BRCA TCGA-AR-A1AY TRPC6 SNP Missense_Mutation 11 101353892 C A 22 87 BRCA TCGA-AR-A1AY TECTA SNP Missense_Mutation 11 121028626 C G 23 97 BRCA TCGA-AR-A1AY DRAM1 SNP Silent 12 102315029 T C 59 50 BRCA TCGA-AR-A1AY NUAK1 SNP Missense_Mutation 12 106466578 A C 9 79 BRCA TCGA-AR-A1AY PTPRO SNP Silent 12 15661533 G T 45 49 BRCA TCGA-AR-A1AY ATP2B1 SNP Silent 12 90024403 G A 34 65 BRCA TCGA-AR-A1AY YLPM1 SNP Missense_Mutation 14 75264973 T G 52 54 BRCA TCGA-AR-A1AY CYLD SNP Missense_Mutation 16 50816338 G A 44 98 BRCA TCGA-AR-A1AY TP53 DEL Frame_Shift_Del 17 7579321 CA - 29 46 BRCA TCGA-AR-A1AY SLC25A35 DEL Frame_Shift_Del 17 8198073 TTGG - 52 85 BRCA TCGA-AR-A1AY LAMA3 SNP Missense_Mutation 18 21451420 G A 40 61 BRCA TCGA-AR-A1AY FHOD3 SNP Missense_Mutation 18 34289239 G T 42 53 BRCA TCGA-AR-A1AY ZNF730 SNP Missense_Mutation 19 23329065 C T 23 49 BRCA TCGA-AR-A1AY C19orf71 SNP Missense_Mutation 19 3543315 C T 19 49 BRCA TCGA-AR-A1AY CBLC SNP Missense_Mutation 19 45303662 C G 30 52 BRCA TCGA-AR-A1AY RPL13A SNP Missense_Mutation 19 49995067 G C 44 73 BRCA TCGA-AR-A1AY VIT SNP Splice_site 2 36994428 G A 43 77 BRCA TCGA-AR-A1AY REG1B SNP Nonsense_Mutation 2 79312688 G T 48 58 BRCA TCGA-AR-A1AY BAGE2 SNP Missense_Mutation 21 11098693 G A 38 51 BRCA TCGA-AR-A1AY KCNE2 SNP Missense_Mutation 21 35742917 A T 14 69 BRCA TCGA-AR-A1AY B3GALT5 SNP Missense_Mutation 21 41032610 G C 39 58 BRCA TCGA-AR-A1AY OSBP2 SNP Missense_Mutation 22 31289855 G A 39 100 BRCA TCGA-AR-A1AY CARD10 SNP Missense_Mutation 22 37892477 G A 43 58 BRCA TCGA-AR-A1AY ARSF SNP Missense_Mutation 23 3019142 G A 46 58 BRCA TCGA-AR-A1AY CXorf30 SNP Nonsense_Mutation 23 36366361 G A 47 76 BRCA TCGA-AR-A1AY ZNF157 SNP Missense_Mutation 23 47272787 G C 33 87 BRCA TCGA-AR-A1AY NAA50 SNP Missense_Mutation 3 113440684 C T 27 87 BRCA TCGA-AR-A1AY MYLK SNP Silent 3 123456340 G A 40 35 BRCA TCGA-AR-A1AY EEFSEC SNP Missense_Mutation 3 128060108 C A 30 52 BRCA TCGA-AR-A1AY AADAC SNP Missense_Mutation 3 151532014 C T 26 63 BRCA TCGA-AR-A1AY SEMA3F SNP Silent 3 50211374 C T 27 36 BRCA TCGA-AR-A1AY FEZF2 SNP Missense_Mutation 3 62356997 C A 23 100 BRCA TCGA-AR-A1AY ZNF654 SNP Missense_Mutation 3 88188575 C T 20 72 BRCA TCGA-AR-A1AY AFP SNP Missense_Mutation 4 74319576 T A 55 71 BRCA TCGA-AR-A1AY AFF1 DEL Frame_Shift_Del 4 88052306 AG - 7 56 BRCA TCGA-AR-A1AY PCDHA8 SNP Silent 5 140222367 C T 19 51 BRCA TCGA-AR-A1AY RBM22 SNP Silent 5 150076368 C T 32 77 BRCA TCGA-AR-A1AY KIF4B SNP Missense_Mutation 5 154395359 G A 39 67 BRCA TCGA-AR-A1AY C6orf170 SNP Nonsense_Mutation 6 121615779 G A 45 61 BRCA TCGA-AR-A1AY BRPF3 SNP Missense_Mutation 6 36178029 G A 41 100 BRCA TCGA-AR-A1AY SYNCRIP SNP Silent 6 86351074 C T 32 82 BRCA TCGA-AR-A1AY UBN2 SNP Missense_Mutation 7 138946092 G A 33 83 BRCA TCGA-AR-A1AY SGCZ SNP Silent 8 13965683 G T 43 49 BRCA TCGA-AR-A1AY C9orf96 SNP Silent 9 136266928 G A 45 60 BRCA TCGA-AR-A1AY FAM205A DEL Frame_Shift_Del 9 34724646 C - 30 49 BRCA TCGA-AR-A24H AKNAD1 SNP Missense_Mutation 1 109395170 A T 8 56 BRCA TCGA-AR-A24H IVL SNP Missense_Mutation 1 152882851 T G 55 44 BRCA TCGA-AR-A24H ANGPTL1 SNP Missense_Mutation 1 178834198 C A 32 71 BRCA TCGA-AR-A24H KIAA1614 SNP Silent 1 180886055 G T 47 46 BRCA TCGA-AR-A24H IVNS1ABP SNP Missense_Mutation 1 185270573 C G 32 75 BRCA TCGA-AR-A24H HMCN1 SNP Missense_Mutation 1 186036993 G A 36 54 BRCA TCGA-AR-A24H DDX59 SNP Silent 1 200613627 A G 4 57 BRCA TCGA-AR-A24H CHI3L1 SNP Missense_Mutation 1 203154430 C T 29 71 BRCA TCGA-AR-A24H PLEKHA6 SNP Missense_Mutation 1 204230534 T A 54 74 BRCA TCGA-AR-A24H C4BPA DEL Frame_Shift_Del 1 207287417 TGGTGCTCCTTCTCATTTTGGTGTCCAGGCAATTG - 63 48 BRCA TCGA-AR-A24H CR2 SNP Silent 1 207648368 T A 54 45 BRCA TCGA-AR-A24H EPB41 SNP Nonsense_Mutation 1 29314146 T A 63 58 BRCA TCGA-AR-A24H PIK3R3 SNP Missense_Mutation 1 46511674 G A 46 100 BRCA TCGA-AR-A24H PAX2 SNP Missense_Mutation 10 102584408 G A 40 94 BRCA TCGA-AR-A24H CSGALNACT2 SNP Missense_Mutation 10 43650986 A G 1 78 BRCA TCGA-AR-A24H WDFY4 SNP Nonsense_Mutation 10 49988074 G A 42 91 BRCA TCGA-AR-A24H RHOBTB1 DEL Frame_Shift_Del 10 62648195 AAGGGCCTGGCTGGACTGAAGCGTCCATCCTG - 1 90 BRCA TCGA-AR-A24H KCNMA1 SNP Silent 10 78674713 G A 41 71 BRCA TCGA-AR-A24H MUC5B SNP Missense_Mutation 11 1268164 A G 8 61 BRCA TCGA-AR-A24H MUC5B SNP Missense_Mutation 11 1268543 T C 50 37 BRCA TCGA-AR-A24H MUC5B SNP Silent 11 1268553 C G 21 77 BRCA TCGA-AR-A24H NAV2 DEL Frame_Shift_Del 11 19864448 TCCGAAGAACAGA - 58 60 BRCA TCGA-AR-A24H ARFGAP2 SNP Missense_Mutation 11 47198382 G A 44 55 BRCA TCGA-AR-A24H OR5B3 SNP Silent 11 58170265 A G 13 48 BRCA TCGA-AR-A24H DHCR7 SNP Silent 11 71155930 G C 39 35 BRCA TCGA-AR-A24H P4HA3 SNP Missense_Mutation 11 74000171 C T 30 73 BRCA TCGA-AR-A24H ANO4 SNP Missense_Mutation 12 101430911 G T 46 97 BRCA TCGA-AR-A24H GALNT9 SNP Missense_Mutation 12 132905608 T G 54 84 BRCA TCGA-AR-A24H GALNT9 SNP Nonsense_Mutation 12 132905684 C A 30 70 BRCA TCGA-AR-A24H CACNA1C SNP Splice_Site 12 2711019 G T 33 98 BRCA TCGA-AR-A24H SLC38A4 SNP Missense_Mutation 12 47172298 C G 17 67 BRCA TCGA-AR-A24H ITGA5 SNP Missense_Mutation 12 54803355 A G 10 57 BRCA TCGA-AR-A24H SLC39A5 SNP Missense_Mutation 12 56625219 C A 20 70 BRCA TCGA-AR-A24H CNOT2 SNP Missense_Mutation 12 70726585 G A 41 85 BRCA TCGA-AR-A24H FGD6 SNP Missense_Mutation 12 95501370 C T 23 85 BRCA TCGA-AR-A24H PCDH17 INS Splice_site 13 58299427 - A 45 61 BRCA TCGA-AR-A24H DYNC1H1 SNP Missense_Mutation 14 102478724 T G 59 93 BRCA TCGA-AR-A24H AMN SNP Silent 14 103395190 G A 41 75 BRCA TCGA-AR-A24H C14orf119 SNP Missense_Mutation 14 23566911 C A 32 75 BRCA TCGA-AR-A24H MYH7 SNP Missense_Mutation 14 23891449 G A 44 98 BRCA TCGA-AR-A24H NYNRIN SNP Missense_Mutation 14 24877309 C G 22 52 BRCA TCGA-AR-A24H AKAP6 SNP Missense_Mutation 14 33147618 G C 35 48 BRCA TCGA-AR-A24H SIX1 SNP Missense_Mutation 14 61113081 C T 23 51 BRCA TCGA-AR-A24H ADAMTS17 SNP Missense_Mutation 15 100636566 C T 22 93 BRCA TCGA-AR-A24H RYR3 SNP Missense_Mutation 15 34064213 A T 2 70 BRCA TCGA-AR-A24H NOP10 SNP Missense_Mutation 15 34635251 G C 40 53 BRCA TCGA-AR-A24H EHD4 SNP Silent 15 42235331 G A 35 71 BRCA TCGA-AR-A24H SYT17 SNP Missense_Mutation 16 19195047 G A 37 98 BRCA TCGA-AR-A24H GTF3C1 SNP Missense_Mutation 16 27483171 C A 28 92 BRCA TCGA-AR-A24H NUPR1 SNP Missense_Mutation 16 28549435 C T 25 51 BRCA TCGA-AR-A24H SLC7A6 SNP Missense_Mutation 16 68330554 T A 60 89 BRCA TCGA-AR-A24H CDH1 DEL Frame_Shift_Del 16 68863622 TGCACCAACCCTCA - 63 49 BRCA TCGA-AR-A24H CLEC3A SNP Missense_Mutation 16 78064682 G A 45 99 BRCA TCGA-AR-A24H DYNLRB2 SNP Silent 16 80577175 A C 7 55 BRCA TCGA-AR-A24H MYH8 SNP Silent 17 10301949 G A 40 47 BRCA TCGA-AR-A24H ZNF830 SNP Missense_Mutation 17 33288605 C A 26 57 BRCA TCGA-AR-A24H HNF1B SNP Splice_site 17 36099431 G A 40 100 BRCA TCGA-AR-A24H STARD3 SNP Silent 17 37809976 C T 32 64 BRCA TCGA-AR-A24H SLC25A39 SNP Missense_Mutation 17 42398003 C A 26 77 BRCA TCGA-AR-A24H ITGB3 SNP Missense_Mutation 17 45376772 A G 5 56 BRCA TCGA-AR-A24H FAM117A DEL In_Frame_Del 17 47788904 CAGGAC - 29 83 BRCA TCGA-AR-A24H WFIKKN2 SNP Silent 17 48913406 G A 38 26 BRCA TCGA-AR-A24H LIPE SNP Missense_Mutation 19 42907078 C G 30 58 BRCA TCGA-AR-A24H TEX101 SNP Missense_Mutation 19 43920373 A T 2 49 BRCA TCGA-AR-A24H SNRNP70 SNP Splice_Site 19 49610881 G C 35 90 BRCA TCGA-AR-A24H SIGLEC9 SNP Missense_Mutation 19 51628890 C A 18 49 BRCA TCGA-AR-A24H PTBP1 SNP Missense_Mutation 19 808581 A G 9 89 BRCA TCGA-AR-A24H ZSWIM2 SNP Missense_Mutation 2 187693353 T A 56 53 BRCA TCGA-AR-A24H PUM2 SNP Missense_Mutation 2 20512037 G A 35 100 BRCA TCGA-AR-A24H APOB DNP Missense_Mutation 2 21251331 AT GG 8 90 BRCA TCGA-AR-A24H BIRC6 SNP Missense_Mutation 2 32656007 A G 10 92 BRCA TCGA-AR-A24H MSH2 SNP Missense_Mutation 2 47702380 A C 1 67 BRCA TCGA-AR-A24H PNPT1 SNP Missense_Mutation 2 55920943 A C 14 51 BRCA TCGA-AR-A24H DGUOK SNP Missense_Mutation 2 74177737 G C 45 99 BRCA TCGA-AR-A24H RBM12 SNP Nonsense_Mutation 20 34241980 G C 45 81 BRCA TCGA-AR-A24H SOGA1 SNP Missense_Mutation 20 35415036 G A 34 64 BRCA TCGA-AR-A24H RASSF2 SNP Silent 20 4773210 C T 24 55 BRCA TCGA-AR-A24H ZFP64 SNP Missense_Mutation 20 50769649 T G 59 79 BRCA TCGA-AR-A24H TRPM2 SNP Silent 21 45789136 G C 45 58 BRCA TCGA-AR-A24H TAF7L SNP Missense_Mutation 23 100531448 C T 29 49 BRCA TCGA-AR-A24H GPRASP2 SNP Missense_Mutation 23 101971743 A T 16 52 BRCA TCGA-AR-A24H DKC1 SNP Missense_Mutation 23 153993196 T G 49 54 BRCA TCGA-AR-A24H ASMTL SNP Missense_Mutation 23 1558027 C T 23 62 BRCA TCGA-AR-A24H CDKL5 SNP Missense_Mutation 23 18664154 G C 33 52 BRCA TCGA-AR-A24H CXorf21 SNP Missense_Mutation 23 30578016 C T 21 79 BRCA TCGA-AR-A24H ZNF41 SNP Missense_Mutation 23 47308257 G C 46 57 BRCA TCGA-AR-A24H HDAC6 SNP Missense_Mutation 23 48672886 G T 44 30 BRCA TCGA-AR-A24H ABCB7 SNP Missense_Mutation 23 74289263 C A 32 59 BRCA TCGA-AR-A24H DIAPH2 SNP Missense_Mutation 23 96603145 G C 45 99 BRCA TCGA-AR-A24H MECOM DEL Frame_Shift_Del 3 168819968 GCACTGAA - 42 87 BRCA TCGA-AR-A24H LAMP3 INS Frame_Shift_Ins 3 182841959 - C 5 53 BRCA TCGA-AR-A24H YEATS2 SNP Missense_Mutation 3 183524710 C A 25 70 BRCA TCGA-AR-A24H PIGZ SNP Missense_Mutation 3 196675280 G C 33 71 BRCA TCGA-AR-A24H TRANK1 SNP Missense_Mutation 3 36899136 T C 59 44 BRCA TCGA-AR-A24H QARS SNP Missense_Mutation 3 49136104 G A 38 100 BRCA TCGA-AR-A24H VPRBP SNP Missense_Mutation 3 51440606 T A 50 88 BRCA TCGA-AR-A24H NAT8L SNP Missense_Mutation 4 2065586 C T 32 100 BRCA TCGA-AR-A24H ZBTB49 SNP Missense_Mutation 4 4322987 A T 10 75 BRCA TCGA-AR-A24H WDFY3 SNP Silent 4 85663022 C T 29 66 BRCA TCGA-AR-A24H GRID2 SNP Missense_Mutation 4 94436426 C T 27 100 BRCA TCGA-AR-A24H SNCAIP SNP Silent 5 121780266 T A 63 52 BRCA TCGA-AR-A24H PCDHA12 SNP Silent 5 140256083 C T 19 60 BRCA TCGA-AR-A24H PCDHGA12 SNP Missense_Mutation 5 140811837 A C 14 59 BRCA TCGA-AR-A24H MED7 SNP Missense_Mutation 5 156565934 G C 33 100 BRCA TCGA-AR-A24H C5orf45 SNP Missense_Mutation 5 179280249 G C 41 53 BRCA TCGA-AR-A24H C5orf42 INS In_Frame_Ins 5 37182935 - TCTTTA 42 91 BRCA TCGA-AR-A24H CDK19 SNP Silent 6 110942346 G C 38 52 BRCA TCGA-AR-A24H REV3L SNP Missense_Mutation 6 111694984 G C 33 96 BRCA TCGA-AR-A24H RFX6 SNP Missense_Mutation 6 117249959 C G 17 47 BRCA TCGA-AR-A24H SYNE1 SNP Missense_Mutation 6 152464831 A C 16 77 BRCA TCGA-AR-A24H RPS6KA2 SNP Missense_Mutation 6 166831734 G T 36 52 BRCA TCGA-AR-A24H C6orf70 SNP Silent 6 170176590 T A 62 29 BRCA TCGA-AR-A24H ABHD16A SNP Missense_Mutation 6 31660923 C G 24 57 BRCA TCGA-AR-A24H MAD2L1BP SNP Missense_Mutation 6 43607982 G C 33 50 BRCA TCGA-AR-A24H PTCHD4 INS Frame_Shift_Ins 6 47846834 - T 28 74 BRCA TCGA-AR-A24H ACTL6B SNP Nonsense_Mutation 7 100245120 T A 62 88 BRCA TCGA-AR-A24H TES SNP Missense_Mutation 7 115889294 G A 45 95 BRCA TCGA-AR-A24H ZNF786 SNP Missense_Mutation 7 148768278 C G 32 60 BRCA TCGA-AR-A24H ELFN1 DEL Frame_Shift_Del 7 1784270 TGGCGGCCGCCACCCTGCTGCACGC - 59 66 BRCA TCGA-AR-A24H RAPGEF5 DEL In_Frame_Del 7 22190031 GTCCGCCAG - 48 48 BRCA TCGA-AR-A24H CHN2 SNP Missense_Mutation 7 29433303 C G 17 91 BRCA TCGA-AR-A24H TBX20 SNP Missense_Mutation 7 35242254 G C 44 66 BRCA TCGA-AR-A24H EGFR SNP Silent 7 55219021 C T 28 54 BRCA TCGA-AR-A24H YWHAG SNP Silent 7 75959386 C T 19 47 BRCA TCGA-AR-A24H ABCB1 SNP Splice_site 7 87168661 C T 22 100 BRCA TCGA-AR-A24H ZFPM2 SNP Missense_Mutation 8 106814376 G C 48 100 BRCA TCGA-AR-A24H SLC30A8 DEL Frame_Shift_Del 8 118183309 AGCTTATTTT - 11 63 BRCA TCGA-AR-A24H SAMD12 SNP Missense_Mutation 8 119391733 C G 24 45 BRCA TCGA-AR-A24H FER1L6 SNP Silent 8 125074185 C T 17 66 BRCA TCGA-AR-A24H PRKDC SNP Nonsense_Mutation 8 48839765 G T 45 68 BRCA TCGA-AR-A24H CHD7 SNP Silent 8 61773585 G C 41 63 BRCA TCGA-AR-A24H MCMDC2 SNP Silent 8 67793181 A G 5 58 BRCA TCGA-AR-A24H OR13C9 SNP Missense_Mutation 9 107379675 C T 32 61 BRCA TCGA-AR-A24H TXNDC8 SNP Missense_Mutation 9 113066787 C A 32 72 BRCA TCGA-AR-A24H SVEP1 DEL In_Frame_Del 9 113208280 CAGAAACTT - 21 98 BRCA TCGA-AR-A24H RNF208 SNP Missense_Mutation 9 140114992 C T 22 75 BRCA TCGA-AR-A24H NPR2 SNP Splice_site 9 35801760 G A 47 75 BRCA TCGA-AR-A24H OR13J1 SNP Missense_Mutation 9 35870175 G C 43 73 BRCA TCGA-AR-A24H FAM22F SNP Silent 9 97082784 C G 25 59 BRCA TCGA-AR-A24K VCL SNP Missense_Mutation 10 75834570 A G 4 90 BRCA TCGA-AR-A24K STAB2 SNP Missense_Mutation 12 104100711 G A 39 96 BRCA TCGA-AR-A24K TMTC2 SNP Missense_Mutation 12 83444707 G A 40 97 BRCA TCGA-AR-A24K CCER1 SNP Missense_Mutation 12 91347459 C T 22 48 BRCA TCGA-AR-A24K GOLGA8J SNP Silent 15 32689491 T C 56 44 BRCA TCGA-AR-A24K IGDCC3 SNP Missense_Mutation 15 65622726 G A 46 56 BRCA TCGA-AR-A24K PML INS Frame_Shift_Ins 15 74327557 - A 22 56 BRCA TCGA-AR-A24K NCOR1 SNP Splice_Site 17 15973477 A G 14 86 BRCA TCGA-AR-A24K ABCA8 SNP Missense_Mutation 17 66920927 G T 35 58 BRCA TCGA-AR-A24K TP53 INS Frame_Shift_Ins 17 7579360 - AA 41 61 BRCA TCGA-AR-A24K SPDYE4 SNP Missense_Mutation 17 8660619 C T 19 50 BRCA TCGA-AR-A24K MPV17L2 SNP Silent 19 18304729 G A 48 45 BRCA TCGA-AR-A24K CHST8 SNP Missense_Mutation 19 34263642 G A 41 97 BRCA TCGA-AR-A24K EEF2 SNP Missense_Mutation 19 3983150 G C 39 81 BRCA TCGA-AR-A24K CYP2S1 SNP Silent 19 41704416 A T 15 44 BRCA TCGA-AR-A24K VN1R4 SNP Missense_Mutation 19 53770069 C T 17 23 BRCA TCGA-AR-A24K LIPT1 SNP Silent 2 99778927 C T 31 50 BRCA TCGA-AR-A24K RRBP1 SNP Missense_Mutation 20 17641006 C T 21 63 BRCA TCGA-AR-A24K OFD1 SNP Silent 23 13774756 G T 45 55 BRCA TCGA-AR-A24K PIK3CA SNP Missense_Mutation 3 178921567 A G 10 89 BRCA TCGA-AR-A24K KCNH8 SNP Missense_Mutation 3 19295241 A G 2 78 BRCA TCGA-AR-A24K PRKCD SNP Missense_Mutation 3 53223092 T A 57 90 BRCA TCGA-AR-A24K EGF SNP Missense_Mutation 4 110925680 A G 9 57 BRCA TCGA-AR-A24K MET SNP Missense_Mutation 7 116399515 G A 48 71 BRCA TCGA-AR-A24K LRGUK SNP Silent 7 133842882 A G 13 48 BRCA TCGA-AR-A24K TRPS1 SNP Missense_Mutation 8 116616565 C T 31 95 BRCA TCGA-AR-A24K PI15 SNP Missense_Mutation 8 75756324 C T 19 55 BRCA TCGA-AR-A24K SETX SNP Missense_Mutation 9 135172419 T C 52 78 BRCA TCGA-AR-A24L CD53 SNP Missense_Mutation 1 111435055 C G 19 98 BRCA TCGA-AR-A24L PTCHD2 SNP Missense_Mutation 1 11591069 G A 47 83 BRCA TCGA-AR-A24L TTF2 SNP Missense_Mutation 1 117618034 G C 33 52 BRCA TCGA-AR-A24L CD5L SNP Silent 1 157805923 C A 21 53 BRCA TCGA-AR-A24L DCAF6 SNP Nonstop_Mutation 1 168044671 T A 49 61 BRCA TCGA-AR-A24L PADI2 SNP Silent 1 17395659 G T 42 59 BRCA TCGA-AR-A24L ARID4B DEL Frame_Shift_Del 1 235346022 TCTTAGATTCC - 50 45 BRCA TCGA-AR-A24L KNDC1 SNP Missense_Mutation 10 135020480 T A 54 49 BRCA TCGA-AR-A24L DYNC2H1 DEL Frame_Shift_Del 11 103116068 TT - 56 92 BRCA TCGA-AR-A24L DYNC2H1 DEL Frame_Shift_Del 11 103116072 TC - 50 56 BRCA TCGA-AR-A24L OR10S1 SNP Silent 11 123848195 G T 45 55 BRCA TCGA-AR-A24L MYO7A SNP Splice_Site 11 76903324 G T 44 97 BRCA TCGA-AR-A24L TRIM66 SNP Missense_Mutation 11 8670021 C G 29 88 BRCA TCGA-AR-A24L PIWIL4 SNP Missense_Mutation 11 94331003 G C 43 87 BRCA TCGA-AR-A24L ALX1 SNP Missense_Mutation 12 85680747 C A 17 72 BRCA TCGA-AR-A24L SERPINA12 SNP Silent 14 94953679 C G 25 47 BRCA TCGA-AR-A24L CHRNB4 SNP Missense_Mutation 15 78927917 A G 6 55 BRCA TCGA-AR-A24L HAPLN3 SNP Silent 15 89424727 G A 38 41 BRCA TCGA-AR-A24L CCDC78 SNP Missense_Mutation 16 775286 G A 43 58 BRCA TCGA-AR-A24L MED24 SNP Silent 17 38176104 C T 24 66 BRCA TCGA-AR-A24L TCF4 SNP Missense_Mutation 18 52899822 G C 35 91 BRCA TCGA-AR-A24L UNC13A SNP Missense_Mutation 19 17728543 A G 12 84 BRCA TCGA-AR-A24L CADM4 DEL Frame_Shift_Del 19 44129369 CTCATTC - 20 55 BRCA TCGA-AR-A24L NMS SNP Nonsense_Mutation 2 101087011 C T 17 72 BRCA TCGA-AR-A24L APOB SNP Missense_Mutation 2 21245741 A C 9 49 BRCA TCGA-AR-A24L PLEK SNP Missense_Mutation 2 68613653 G T 42 100 BRCA TCGA-AR-A24L PDYN SNP Silent 20 1961218 G C 45 60 BRCA TCGA-AR-A24L AHCY SNP Missense_Mutation 20 32868859 G A 39 99 BRCA TCGA-AR-A24L RALGAPB SNP Missense_Mutation 20 37177413 C G 22 99 BRCA TCGA-AR-A24L LAMP5 SNP Missense_Mutation 20 9498735 C G 22 98 BRCA TCGA-AR-A24L MN1 SNP Missense_Mutation 22 28195783 G C 33 81 BRCA TCGA-AR-A24L KIAA1210 SNP Missense_Mutation 23 118221786 G T 41 52 BRCA TCGA-AR-A24L CCDC80 SNP Silent 3 112357487 C T 28 46 BRCA TCGA-AR-A24L ETV5 SNP Missense_Mutation 3 185783746 G A 41 65 BRCA TCGA-AR-A24L ULK4 SNP Silent 3 41942265 G A 33 63 BRCA TCGA-AR-A24L NFKB1 SNP Missense_Mutation 4 103501694 G A 34 97 BRCA TCGA-AR-A24L FGA SNP Missense_Mutation 4 155507138 T G 56 55 BRCA TCGA-AR-A24L TRIM60 SNP Missense_Mutation 4 165961691 A G 9 55 BRCA TCGA-AR-A24L THOC3 SNP Silent 5 175387038 G A 40 57 BRCA TCGA-AR-A24L LMAN2 DEL In_Frame_Del 5 176764146 CGCCGGTGC - 31 86 BRCA TCGA-AR-A24L ZNF76 SNP Missense_Mutation 6 35262260 G T 44 55 BRCA TCGA-AR-A24L PKHD1L1 SNP Silent 8 110464392 C A 21 51 BRCA TCGA-AR-A24L TNFRSF11B SNP Missense_Mutation 8 119936866 G C 46 59 BRCA TCGA-AR-A24L CD72 SNP Missense_Mutation 9 35612972 C G 30 67 BRCA TCGA-AR-A24M CROCC SNP Missense_Mutation 1 17273292 C T 19 72 BRCA TCGA-AR-A24M CRB1 SNP Silent 1 197390446 C A 29 49 BRCA TCGA-AR-A24M PLD5 SNP Missense_Mutation 1 242383361 A G 11 82 BRCA TCGA-AR-A24M UBXN11 SNP Missense_Mutation 1 26608885 C T 23 45 BRCA TCGA-AR-A24M MARCKSL1 SNP Silent 1 32800612 G A 39 42 BRCA TCGA-AR-A24M PLK3 SNP Missense_Mutation 1 45270401 C A 28 62 BRCA TCGA-AR-A24M MRE11A SNP Missense_Mutation 11 94209462 G T 45 97 BRCA TCGA-AR-A24M MBNL2 SNP Missense_Mutation 13 97999169 T A 63 93 BRCA TCGA-AR-A24M TTC6 SNP Silent 14 38277943 T C 49 49 BRCA TCGA-AR-A24M NTHL1 SNP Silent 16 2093638 C T 27 34 BRCA TCGA-AR-A24M ABCA3 SNP Silent 16 2345722 C T 27 42 BRCA TCGA-AR-A24M PHLDB3 SNP Silent 19 44008076 A G 7 30 BRCA TCGA-AR-A24M SNTG2 SNP Splice_Site 2 1094038 G T 35 88 BRCA TCGA-AR-A24M GOLGB1 SNP Silent 3 121416508 C T 21 37 BRCA TCGA-AR-A24M SLC25A36 SNP Missense_Mutation 3 140675496 A G 5 61 BRCA TCGA-AR-A24M PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-AR-A24M TRIM2 SNP Silent 4 154191510 A G 7 64 BRCA TCGA-AR-A24M UTP3 SNP Missense_Mutation 4 71555017 C T 28 68 BRCA TCGA-AR-A24M ZNF622 SNP Silent 5 16463793 G A 40 8 BRCA TCGA-AR-A24M PIK3R1 SNP Missense_Mutation 5 67590467 A T 9 92 BRCA TCGA-AR-A24M SLC35B2 SNP Missense_Mutation 6 44224110 A T 7 68 BRCA TCGA-AR-A24N HIPK1 SNP Missense_Mutation 1 114516067 G A 37 75 BRCA TCGA-AR-A24N TP53BP2 SNP Missense_Mutation 1 223971901 G C 41 51 BRCA TCGA-AR-A24N NEGR1 SNP Missense_Mutation 1 72241932 C T 30 96 BRCA TCGA-AR-A24N MUC5B SNP Silent 11 1251806 G A 38 46 BRCA TCGA-AR-A24N UBQLN3 SNP Missense_Mutation 11 5530467 G A 43 58 BRCA TCGA-AR-A24N SLC22A9 SNP Splice_Site 11 63141114 A T 7 80 BRCA TCGA-AR-A24N C11orf24 SNP Missense_Mutation 11 68031210 C G 21 54 BRCA TCGA-AR-A24N UBC INS Frame_Shift_Ins 12 125396630 - G 63 87 BRCA TCGA-AR-A24N RECQL SNP Silent 12 21639494 C T 29 58 BRCA TCGA-AR-A24N KCNA5 SNP Missense_Mutation 12 5154181 C A 21 81 BRCA TCGA-AR-A24N SAMD4A SNP Missense_Mutation 14 55169153 G T 42 99 BRCA TCGA-AR-A24N VRK1 SNP Missense_Mutation 14 97299833 G A 34 58 BRCA TCGA-AR-A24N UBN1 SNP Missense_Mutation 16 4924371 C T 30 44 BRCA TCGA-AR-A24N STUB1 SNP Silent 16 731865 C T 25 69 BRCA TCGA-AR-A24N NPIPL2 SNP Missense_Mutation 16 74419288 T C 50 50 BRCA TCGA-AR-A24N CWC25 SNP Missense_Mutation 17 36977158 C T 19 67 BRCA TCGA-AR-A24N FOXK2 SNP Missense_Mutation 17 80525932 C T 28 100 BRCA TCGA-AR-A24N ZNF429 SNP Missense_Mutation 19 21719514 A G 3 44 BRCA TCGA-AR-A24N PRRG2 SNP Missense_Mutation 19 50091757 G A 40 52 BRCA TCGA-AR-A24N SHANK1 SNP Missense_Mutation 19 51165718 C T 23 79 BRCA TCGA-AR-A24N ZNF548 SNP Silent 19 57908526 C T 22 45 BRCA TCGA-AR-A24N TGM2 SNP Missense_Mutation 20 36776418 C T 19 53 BRCA TCGA-AR-A24N NFATC2 SNP Silent 20 50048992 C T 23 39 BRCA TCGA-AR-A24N HNRNPH2 SNP Nonsense_Mutation 23 100668309 C T 29 61 BRCA TCGA-AR-A24N USP53 SNP Silent 4 120193097 C T 29 71 BRCA TCGA-AR-A24N PRR16 SNP Silent 5 120022380 G A 41 65 BRCA TCGA-AR-A24N PCDHGA11 SNP Missense_Mutation 5 140802650 C T 27 52 BRCA TCGA-AR-A24N MLL3 SNP Nonsense_Mutation 7 151860728 G A 45 95 BRCA TCGA-AR-A24N KIAA0196 SNP Silent 8 126056088 C T 19 49 BRCA TCGA-AR-A24N KCNK9 SNP Missense_Mutation 8 140714982 T C 57 85 BRCA TCGA-AR-A24N ZNF623 SNP Missense_Mutation 8 144732952 T C 54 54 BRCA TCGA-AR-A24N CACNA1B SNP Missense_Mutation 9 140865931 G A 38 74 BRCA TCGA-AR-A24O SLC30A10 SNP Missense_Mutation 1 220091665 G A 39 85 BRCA TCGA-AR-A24O APPL2 SNP Missense_Mutation 12 105605050 T C 52 86 BRCA TCGA-AR-A24O SENP1 SNP Missense_Mutation 12 48482684 C T 25 67 BRCA TCGA-AR-A24O EFNB2 SNP Missense_Mutation 13 107145608 G A 39 100 BRCA TCGA-AR-A24O TUBGCP3 SNP Missense_Mutation 13 113212589 C T 19 41 BRCA TCGA-AR-A24O FOXA1 SNP Missense_Mutation 14 38061463 T C 51 85 BRCA TCGA-AR-A24O ZNF75A SNP Missense_Mutation 16 3363109 G A 41 53 BRCA TCGA-AR-A24O DOCK10 SNP Silent 2 225661753 G C 43 48 BRCA TCGA-AR-A24O CHD6 SNP Splice_Site 20 40065975 C G 32 78 BRCA TCGA-AR-A24O NHS SNP Missense_Mutation 23 17705913 C T 23 73 BRCA TCGA-AR-A24O PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA TCGA-AR-A24O PCYT1A SNP Missense_Mutation 3 195968901 A C 4 88 BRCA TCGA-AR-A24O FGF18 SNP Silent 5 170883788 C A 30 59 BRCA TCGA-AR-A24O PKHD1L1 SNP Silent 8 110454342 T C 49 48 BRCA TCGA-AR-A24O KCNQ3 SNP Missense_Mutation 8 133142164 G A 40 65 BRCA TCGA-AR-A24P VPS13D SNP Missense_Mutation 1 12387893 G C 38 98 BRCA TCGA-AR-A24P PRAMEF4 SNP Missense_Mutation 1 12939485 C A 28 49 BRCA TCGA-AR-A24P CCDC19 SNP Missense_Mutation 1 159857798 C T 25 67 BRCA TCGA-AR-A24P IVNS1ABP SNP Silent 1 185276771 A T 15 47 BRCA TCGA-AR-A24P ZDHHC6 SNP Missense_Mutation 10 114192251 C T 20 60 BRCA TCGA-AR-A24P WDFY4 SNP Missense_Mutation 10 50013339 G C 42 61 BRCA TCGA-AR-A24P PPFIBP2 SNP Silent 11 7672145 G T 47 69 BRCA TCGA-AR-A24P KDM5A DEL Splice_site 12 420229 CTCTGAAAAACCAAAGTAGATTCTCACAATTTG - 20 59 BRCA TCGA-AR-A24P MYH6 SNP Missense_Mutation 14 23855661 G A 40 62 BRCA TCGA-AR-A24P ZC3H14 SNP Missense_Mutation 14 89039040 G A 37 87 BRCA TCGA-AR-A24P SEMA7A SNP Silent 15 74707257 G A 37 38 BRCA TCGA-AR-A24P CBFB INS Frame_Shift_Ins 16 67070577 - T 36 92 BRCA TCGA-AR-A24P TP53 SNP Missense_Mutation 17 7577580 T C 57 55 BRCA TCGA-AR-A24P GTF3C3 SNP Splice_Site 2 197662520 C T 18 79 BRCA TCGA-AR-A24P MGAT4A DEL Frame_Shift_Del 2 99256673 TCTG - 62 91 BRCA TCGA-AR-A24P CXCR3 SNP Missense_Mutation 23 70836775 C T 27 60 BRCA TCGA-AR-A24P HNRPDL SNP Nonsense_Mutation 4 83350516 G A 47 65 BRCA TCGA-AR-A24P FAM81B SNP Missense_Mutation 5 94772583 G A 38 48 BRCA TCGA-AR-A24P RHOBTB2 SNP Missense_Mutation 8 22865082 G A 37 74 BRCA TCGA-AR-A24P SEMA4D SNP Missense_Mutation 9 92003919 G A 41 95 BRCA TCGA-AR-A24P DMRT3 SNP Missense_Mutation 9 990838 G A 40 67 BRCA TCGA-AR-A24Q UBE4B INS Frame_Shift_Ins 1 10177641 - A 41 99 BRCA TCGA-AR-A24Q NOTCH2 SNP Missense_Mutation 1 120506414 C A 17 63 BRCA TCGA-AR-A24Q PRAMEF1 SNP Missense_Mutation 1 12855745 C G 28 48 BRCA TCGA-AR-A24Q FLG SNP Missense_Mutation 1 152279942 G C 46 58 BRCA TCGA-AR-A24Q MIB2 DEL Frame_Shift_Del 1 1563469 TCCTCACGGAGGTGCCAAACATCGATGTT - 58 84 BRCA TCGA-AR-A24Q SPTA1 SNP Missense_Mutation 1 158612286 C T 31 58 BRCA TCGA-AR-A24Q DNAJC16 SNP Splice_Site 1 15892576 G T 34 90 BRCA TCGA-AR-A24Q LY9 SNP Missense_Mutation 1 160769623 A C 8 58 BRCA TCGA-AR-A24Q C1orf112 SNP Missense_Mutation 1 169798585 G A 45 70 BRCA TCGA-AR-A24Q PAPPA2 SNP Splice_Site 1 176769269 G C 44 82 BRCA TCGA-AR-A24Q RGS1 SNP Silent 1 192545958 C G 21 45 BRCA TCGA-AR-A24Q CFH SNP Nonsense_Mutation 1 196684806 G T 45 77 BRCA TCGA-AR-A24Q KCNH1 SNP Silent 1 210856854 C T 19 13 BRCA TCGA-AR-A24Q EPHB2 SNP Missense_Mutation 1 23237037 A G 7 87 BRCA TCGA-AR-A24Q WDR64 SNP Missense_Mutation 1 241959652 G T 35 47 BRCA TCGA-AR-A24Q AHCTF1 SNP Missense_Mutation 1 247024360 G C 44 70 BRCA TCGA-AR-A24Q KLF17 SNP Silent 1 44595381 C G 24 57 BRCA TCGA-AR-A24Q LRP8 SNP Missense_Mutation 1 53723024 G C 46 71 BRCA TCGA-AR-A24Q SLC44A5 SNP Splice_Site 1 75693410 C T 20 99 BRCA TCGA-AR-A24Q BARHL2 SNP Missense_Mutation 1 91180220 G T 41 82 BRCA TCGA-AR-A24Q ABLIM1 SNP Splice_Site 10 116199016 C T 17 61 BRCA TCGA-AR-A24Q GLRX3 SNP Missense_Mutation 10 131964903 A G 16 88 BRCA TCGA-AR-A24Q PCDH15 SNP Missense_Mutation 10 55826581 G A 35 63 BRCA TCGA-AR-A24Q PRKCQ SNP Missense_Mutation 10 6504320 C T 25 100 BRCA TCGA-AR-A24Q PTEN SNP Missense_Mutation 10 89692883 C G 29 96 BRCA TCGA-AR-A24Q EXPH5 SNP Silent 11 108380564 C A 30 55 BRCA TCGA-AR-A24Q MUC2 SNP Missense_Mutation 11 1097877 G T 41 42 BRCA TCGA-AR-A24Q GALNTL4 SNP Silent 11 11454295 C G 29 60 BRCA TCGA-AR-A24Q BRSK2 SNP Missense_Mutation 11 1463799 C A 24 79 BRCA TCGA-AR-A24Q QSER1 SNP Silent 11 32955888 G A 45 70 BRCA TCGA-AR-A24Q RAG1 SNP Silent 11 36596585 C T 32 64 BRCA TCGA-AR-A24Q FAT3 SNP Missense_Mutation 11 92577403 G T 45 100 BRCA TCGA-AR-A24Q KDM4E SNP Silent 11 94760221 G A 45 50 BRCA TCGA-AR-A24Q CACNA2D4 SNP Missense_Mutation 12 2024051 G T 44 74 BRCA TCGA-AR-A24Q KERA SNP Missense_Mutation 12 91449429 T A 50 51 BRCA TCGA-AR-A24Q STARD13 SNP Silent 13 33739512 A G 8 74 BRCA TCGA-AR-A24Q NBEA SNP Missense_Mutation 13 36229093 A T 16 72 BRCA TCGA-AR-A24Q GPR132 SNP Missense_Mutation 14 105517707 G A 42 63 BRCA TCGA-AR-A24Q BCL2L2 SNP Splice_Site 14 23778024 G A 35 78 BRCA TCGA-AR-A24Q EFS SNP Silent 14 23829243 G A 40 48 BRCA TCGA-AR-A24Q SLC35F4 SNP Missense_Mutation 14 58056019 T G 64 91 BRCA TCGA-AR-A24Q GABRG3 SNP Missense_Mutation 15 27725885 G C 45 84 BRCA TCGA-AR-A24Q MAP1A SNP Missense_Mutation 15 43818417 G T 33 54 BRCA TCGA-AR-A24Q SPATA5L1 SNP Silent 15 45707816 C T 25 78 BRCA TCGA-AR-A24Q FBN1 SNP Missense_Mutation 15 48736765 A G 16 93 BRCA TCGA-AR-A24Q HCN4 SNP Missense_Mutation 15 73615583 C A 24 53 BRCA TCGA-AR-A24Q ZNF592 SNP Silent 15 85326113 T A 63 48 BRCA TCGA-AR-A24Q LOC81691 SNP Nonsense_Mutation 16 20826304 C T 25 50 BRCA TCGA-AR-A24Q CNTNAP4 SNP Missense_Mutation 16 76482725 T G 51 53 BRCA TCGA-AR-A24Q CNTNAP4 SNP Silent 16 76555164 A G 15 57 BRCA TCGA-AR-A24Q MBTPS1 SNP Silent 16 84101990 T A 53 37 BRCA TCGA-AR-A24Q ATP2C2 SNP Silent 16 84488552 C A 21 59 BRCA TCGA-AR-A24Q MYH2 SNP Silent 17 10424654 C T 29 66 BRCA TCGA-AR-A24Q FBXW10 SNP Missense_Mutation 17 18681814 C G 17 50 BRCA TCGA-AR-A24Q TEFM SNP Silent 17 29226268 T C 57 49 BRCA TCGA-AR-A24Q SLFN14 SNP Missense_Mutation 17 33884375 G C 42 73 BRCA TCGA-AR-A24Q TTLL6 SNP Missense_Mutation 17 46882267 C T 31 64 BRCA TCGA-AR-A24Q SSTR2 SNP Silent 17 71165749 T A 56 58 BRCA TCGA-AR-A24Q USH1G SNP Silent 17 72916079 G A 43 54 BRCA TCGA-AR-A24Q RECQL5 SNP Missense_Mutation 17 73625808 G A 44 59 BRCA TCGA-AR-A24Q ZBTB4 SNP Nonsense_Mutation 17 7366443 C A 32 93 BRCA TCGA-AR-A24Q TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-AR-A24Q ENPP7 SNP Silent 17 77708865 C T 32 64 BRCA TCGA-AR-A24Q ACTG1 DEL In_Frame_Del 17 79478494 GGCGTGGGGGAGGGCGTAGCCCTCGTAGATGGG - 47 62 BRCA TCGA-AR-A24Q SIRT7 SNP Missense_Mutation 17 79870419 G C 37 65 BRCA TCGA-AR-A24Q CD226 SNP Nonsense_Mutation 18 67613972 G C 45 66 BRCA TCGA-AR-A24Q CACNA1A SNP Missense_Mutation 19 13397499 G A 40 48 BRCA TCGA-AR-A24Q CACNA1A SNP Missense_Mutation 19 13476202 A C 3 90 BRCA TCGA-AR-A24Q USHBP1 SNP Silent 19 17370192 G A 34 71 BRCA TCGA-AR-A24Q PSG1 SNP Missense_Mutation 19 43373177 G T 43 59 BRCA TCGA-AR-A24Q PLAUR SNP Missense_Mutation 19 44169580 G C 34 53 BRCA TCGA-AR-A24Q ZNF541 SNP Missense_Mutation 19 48058965 C G 20 62 BRCA TCGA-AR-A24Q ZNF610 SNP Silent 19 52869627 C A 21 38 BRCA TCGA-AR-A24Q ZNF808 SNP Missense_Mutation 19 53057483 G T 33 35 BRCA TCGA-AR-A24Q KIR3DL2 SNP Splice_site 19 55377364 A T 11 55 BRCA TCGA-AR-A24Q SAFB SNP Missense_Mutation 19 5654079 A G 1 60 BRCA TCGA-AR-A24Q MFSD9 SNP Silent 2 103335116 C A 23 22 BRCA TCGA-AR-A24Q PTPN4 SNP Missense_Mutation 2 120640129 G A 33 93 BRCA TCGA-AR-A24Q PKP4 SNP Missense_Mutation 2 159526302 G C 33 53 BRCA TCGA-AR-A24Q SCN2A SNP Missense_Mutation 2 166201118 G C 33 64 BRCA TCGA-AR-A24Q SCN7A SNP Missense_Mutation 2 167285716 C T 17 54 BRCA TCGA-AR-A24Q TTN SNP Missense_Mutation 2 179566921 G A 40 98 BRCA TCGA-AR-A24Q ORMDL1 SNP Missense_Mutation 2 190647150 G C 33 61 BRCA TCGA-AR-A24Q DNAH7 SNP Missense_Mutation 2 196837175 C T 20 77 BRCA TCGA-AR-A24Q CASP8 SNP Missense_Mutation 2 202149565 C T 28 76 BRCA TCGA-AR-A24Q PLCD4 SNP Missense_Mutation 2 219496970 G A 41 53 BRCA TCGA-AR-A24Q CXCR7 SNP Silent 2 237489606 C T 30 49 BRCA TCGA-AR-A24Q C2orf42 SNP Missense_Mutation 2 70408913 C G 24 93 BRCA TCGA-AR-A24Q TIA1 SNP Missense_Mutation 2 70442526 C G 29 96 BRCA TCGA-AR-A24Q DQX1 SNP Missense_Mutation 2 74750598 G T 44 56 BRCA TCGA-AR-A24Q NCAPH SNP Missense_Mutation 2 97025913 A G 9 72 BRCA TCGA-AR-A24Q BPIFA2 SNP Silent 20 31765968 C T 29 55 BRCA TCGA-AR-A24Q TOP1 SNP Silent 20 39751880 C A 22 77 BRCA TCGA-AR-A24Q CHD6 SNP Silent 20 40043952 C T 32 64 BRCA TCGA-AR-A24Q WFDC5 SNP Missense_Mutation 20 43739046 G T 42 40 BRCA TCGA-AR-A24Q CDS2 SNP Missense_Mutation 20 5163085 C G 32 69 BRCA TCGA-AR-A24Q PRIC285 SNP Missense_Mutation 20 62195294 C T 25 54 BRCA TCGA-AR-A24Q RUNX1 SNP Silent 21 36164864 G A 39 45 BRCA TCGA-AR-A24Q SYN3 DEL In_Frame_Del 22 32923944 GCCCCAGCTGGGCTT - 42 72 BRCA TCGA-AR-A24Q PKDREJ SNP Missense_Mutation 22 46653339 C A 28 49 BRCA TCGA-AR-A24Q TBC1D8B SNP Missense_Mutation 23 106097454 T G 49 51 BRCA TCGA-AR-A24Q CXorf40A SNP Missense_Mutation 23 148627223 T A 58 67 BRCA TCGA-AR-A24Q PHKA2 SNP Splice_Site 23 18961827 C T 18 100 BRCA TCGA-AR-A24Q KDM6A SNP Splice_Site 23 44969495 G C 36 96 BRCA TCGA-AR-A24Q PHF8 SNP Missense_Mutation 23 54020123 C T 28 51 BRCA TCGA-AR-A24Q VSIG4 SNP Missense_Mutation 23 65253420 A T 7 68 BRCA TCGA-AR-A24Q MED12 SNP Missense_Mutation 23 70356243 G A 37 62 BRCA TCGA-AR-A24Q COL6A5 SNP Missense_Mutation 3 130110337 G A 38 93 BRCA TCGA-AR-A24Q ATP2C1 SNP Missense_Mutation 3 130686035 G C 44 97 BRCA TCGA-AR-A24Q FBLN2 SNP Missense_Mutation 3 13669464 G C 48 100 BRCA TCGA-AR-A24Q MED12L SNP Silent 3 150840683 T A 55 47 BRCA TCGA-AR-A24Q BTD SNP Missense_Mutation 3 15677076 G A 45 80 BRCA TCGA-AR-A24Q ZBBX SNP Missense_Mutation 3 167000239 T C 63 72 BRCA TCGA-AR-A24Q NDUFB5 SNP Missense_Mutation 3 179341750 A G 11 34 BRCA TCGA-AR-A24Q EIF2B5 SNP Silent 3 183857942 G A 35 55 BRCA TCGA-AR-A24Q EPHA3 SNP Missense_Mutation 3 89390198 A T 10 94 BRCA TCGA-AR-A24Q PABPC4L SNP Nonsense_Mutation 4 135122010 G C 40 50 BRCA TCGA-AR-A24Q RAPGEF2 SNP Nonsense_Mutation 4 160252682 G T 41 100 BRCA TCGA-AR-A24Q KIAA1211 SNP Silent 4 57182104 C A 22 54 BRCA TCGA-AR-A24Q C4orf50 DEL In_Frame_Del 4 5961272 GTT - 40 28 BRCA TCGA-AR-A24Q AREG SNP Missense_Mutation 4 75311103 C G 31 44 BRCA TCGA-AR-A24Q MAPK10 SNP Missense_Mutation 4 87022223 T A 50 94 BRCA TCGA-AR-A24Q GPR151 DEL Frame_Shift_Del 5 145894915 GCTCAGCA - 46 55 BRCA TCGA-AR-A24Q MYO10 SNP Silent 5 16681999 G T 42 55 BRCA TCGA-AR-A24Q C5orf34 SNP Silent 5 43505873 G A 34 64 BRCA TCGA-AR-A24Q ELL2 SNP Missense_Mutation 5 95234001 G T 33 59 BRCA TCGA-AR-A24Q GPRC6A SNP Missense_Mutation 6 117130674 C G 29 93 BRCA TCGA-AR-A24Q SYNE1 SNP Missense_Mutation 6 152527416 C G 30 100 BRCA TCGA-AR-A24Q RUNX2 SNP Missense_Mutation 6 45514594 C G 22 82 BRCA TCGA-AR-A24Q TDRD6 SNP Missense_Mutation 6 46657757 T G 50 87 BRCA TCGA-AR-A24Q MRAP2 SNP Silent 6 84798939 C T 17 89 BRCA TCGA-AR-A24Q SRRT SNP Missense_Mutation 7 100484569 C T 27 57 BRCA TCGA-AR-A24Q RELN SNP Splice_site 7 103197424 C A 23 99 BRCA TCGA-AR-A24Q SPAM1 SNP Missense_Mutation 7 123594195 G A 33 60 BRCA TCGA-AR-A24Q ABCB8 SNP Missense_Mutation 7 150739114 G A 45 94 BRCA TCGA-AR-A24Q PAXIP1 SNP Missense_Mutation 7 154754122 G C 48 73 BRCA TCGA-AR-A24Q OSBPL3 SNP Missense_Mutation 7 24843951 G C 44 65 BRCA TCGA-AR-A24Q HIP1 SNP Silent 7 75192287 C T 28 64 BRCA TCGA-AR-A24Q CSMD3 SNP Silent 8 113326154 G T 34 47 BRCA TCGA-AR-A24Q DLGAP2 SNP Missense_Mutation 8 1581131 C A 29 100 BRCA TCGA-AR-A24Q DOK2 SNP Missense_Mutation 8 21767238 G A 46 76 BRCA TCGA-AR-A24Q CSMD1 SNP Missense_Mutation 8 2813173 C T 30 100 BRCA TCGA-AR-A24Q UNC5D SNP Silent 8 35606156 C G 29 52 BRCA TCGA-AR-A24Q ADAM9 SNP Missense_Mutation 8 38899492 T A 59 67 BRCA TCGA-AR-A24Q OR13C9 SNP Silent 9 107379682 A C 13 41 BRCA TCGA-AR-A24Q ABCA1 SNP Missense_Mutation 9 107558476 C A 21 100 BRCA TCGA-AR-A24Q LMX1B SNP Silent 9 129455805 C A 30 67 BRCA TCGA-AR-A24Q MRPS2 SNP Silent 9 138395757 G T 47 82 BRCA TCGA-AR-A24Q NOL6 SNP Missense_Mutation 9 33466362 G A 41 51 BRCA TCGA-AR-A24Q NOL6 SNP Silent 9 33467129 G A 45 63 BRCA TCGA-AR-A24Q NOL6 SNP Silent 9 33467240 G A 33 52 BRCA TCGA-AR-A24Q NOL6 SNP Missense_Mutation 9 33469038 G A 45 96 BRCA TCGA-AR-A24Q NOL6 SNP Missense_Mutation 9 33469547 G C 41 98 BRCA TCGA-AR-A24Q PRKACG SNP Missense_Mutation 9 71628311 G T 42 67 BRCA TCGA-AR-A24Q PRUNE2 SNP Missense_Mutation 9 79324308 G T 41 88 BRCA TCGA-AR-A24Q PRUNE2 SNP Missense_Mutation 9 79325223 C A 21 87 BRCA TCGA-AR-A24Q VPS13A SNP Missense_Mutation 9 79834980 G C 45 84 BRCA TCGA-AR-A24R ADAR SNP Missense_Mutation 1 154557805 T G 51 78 BRCA TCGA-AR-A24R INPP5B SNP Missense_Mutation 1 38341357 T A 56 69 BRCA TCGA-AR-A24R CHUK SNP Missense_Mutation 10 101978864 G A 35 94 BRCA TCGA-AR-A24R UHRF1BP1L SNP Missense_Mutation 12 100443954 C T 19 92 BRCA TCGA-AR-A24R APPL2 SNP Missense_Mutation 12 105589107 A C 12 52 BRCA TCGA-AR-A24R OR4N5 SNP Missense_Mutation 14 20612744 C T 22 67 BRCA TCGA-AR-A24R TMED10 DEL Frame_Shift_Del 14 75643127 CAGGTCCTTGTGA - 25 66 BRCA TCGA-AR-A24R TMED10 DEL Frame_Shift_Del 14 75643142 CTCC - 32 66 BRCA TCGA-AR-A24R TTLL5 SNP Missense_Mutation 14 76187037 A G 7 80 BRCA TCGA-AR-A24R ZDHHC22 SNP Missense_Mutation 14 77600207 C T 25 74 BRCA TCGA-AR-A24R CNOT1 DEL Frame_Shift_Del 16 58575434 GCTGACTTAAGTCATTT - 42 100 BRCA TCGA-AR-A24R PIGW SNP Missense_Mutation 17 34894403 T C 60 58 BRCA TCGA-AR-A24R DNAI2 SNP Missense_Mutation 17 72310298 G A 35 49 BRCA TCGA-AR-A24R REXO1 SNP Silent 19 1825883 G A 39 43 BRCA TCGA-AR-A24R THOP1 SNP Silent 19 2807034 C T 23 47 BRCA TCGA-AR-A24R SUPT5H SNP Missense_Mutation 19 39959953 A C 11 91 BRCA TCGA-AR-A24R VWA3B SNP Missense_Mutation 2 98928335 C T 27 28 BRCA TCGA-AR-A24R RUNX1 DEL Frame_Shift_Del 21 36171623 AG - 7 46 BRCA TCGA-AR-A24R CXorf65 SNP Missense_Mutation 23 70325861 C T 19 58 BRCA TCGA-AR-A24R ARHGEF38 DEL Splice_site 4 106552056 AGA - 11 49 BRCA TCGA-AR-A24R LETM1 SNP Missense_Mutation 4 1818540 C T 29 95 BRCA TCGA-AR-A24R MLLT4 SNP Missense_Mutation 6 168323655 G T 44 39 BRCA TCGA-AR-A24R DGKB SNP Silent 7 14737756 T C 55 51 BRCA TCGA-AR-A24R GDAP1 SNP Silent 8 75263607 C T 20 70 BRCA TCGA-AR-A24R OR5C1 SNP Missense_Mutation 9 125551282 G A 38 53 BRCA TCGA-AR-A24S TTC24 SNP Silent 1 156554995 G A 39 37 BRCA TCGA-AR-A24S ZNF648 SNP Missense_Mutation 1 182025773 G A 38 55 BRCA TCGA-AR-A24S PDC SNP Missense_Mutation 1 186413472 A G 4 89 BRCA TCGA-AR-A24S SYTL1 DEL Frame_Shift_Del 1 27679789 TGACAGCCAGGCCAGCCGC - 51 58 BRCA TCGA-AR-A24S BTBD19 SNP Missense_Mutation 1 45275937 T A 59 77 BRCA TCGA-AR-A24S HEATR8 SNP Missense_Mutation 1 55166925 G A 39 60 BRCA TCGA-AR-A24S CBL SNP Missense_Mutation 11 119103255 T C 50 93 BRCA TCGA-AR-A24S TYR SNP Missense_Mutation 11 88911832 C A 20 54 BRCA TCGA-AR-A24S RIMKLB DEL Frame_Shift_Del 12 8926133 CCCTTCTA - 30 84 BRCA TCGA-AR-A24S AHNAK2 SNP Silent 14 105416976 G A 44 51 BRCA TCGA-AR-A24S PELI2 SNP Missense_Mutation 14 56763462 C T 23 69 BRCA TCGA-AR-A24S IL4R SNP Missense_Mutation 16 27375135 A G 14 47 BRCA TCGA-AR-A24S RHBDL3 SNP Missense_Mutation 17 30648095 C T 27 48 BRCA TCGA-AR-A24S TP53 SNP Missense_Mutation 17 7577096 T A 58 87 BRCA TCGA-AR-A24S TMEM241 SNP Silent 18 20936610 G A 35 59 BRCA TCGA-AR-A24S ZNF880 SNP Missense_Mutation 19 52888293 C G 20 66 BRCA TCGA-AR-A24S ZNF578 SNP Silent 19 53005128 G A 41 58 BRCA TCGA-AR-A24S ZNF814 SNP Missense_Mutation 19 58385256 A G 9 67 BRCA TCGA-AR-A24S MUC16 SNP Missense_Mutation 19 9073430 C G 29 40 BRCA TCGA-AR-A24S ZNF699 SNP Splice_site 19 9408556 C A 24 63 BRCA TCGA-AR-A24S RALB SNP Missense_Mutation 2 121043616 C T 29 100 BRCA TCGA-AR-A24S TTC21B DEL Splice_Site 2 166770076 AATTTTACCTCTAGAATATTC - 1 53 BRCA TCGA-AR-A24S PNPT1 SNP Missense_Mutation 2 55894154 G A 45 99 BRCA TCGA-AR-A24S IL3RA SNP Missense_Mutation 23 1475125 C G 30 49 BRCA TCGA-AR-A24S UBA1 SNP Silent 23 47061807 C T 31 46 BRCA TCGA-AR-A24S MTMR8 SNP Missense_Mutation 23 63490847 C T 32 53 BRCA TCGA-AR-A24S KIF4A SNP Missense_Mutation 23 69639610 G A 40 58 BRCA TCGA-AR-A24S UPRT SNP Missense_Mutation 23 74519659 G A 34 97 BRCA TCGA-AR-A24S PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-AR-A24S MASP1 SNP Missense_Mutation 3 186961340 G C 44 84 BRCA TCGA-AR-A24S CHL1 SNP Silent 3 447268 C T 19 48 BRCA TCGA-AR-A24S KIAA1109 SNP Silent 4 123202768 T A 60 89 BRCA TCGA-AR-A24S KIAA1109 SNP Missense_Mutation 4 123271039 G C 36 62 BRCA TCGA-AR-A24S PCDHB11 SNP Silent 5 140581057 G A 38 49 BRCA TCGA-AR-A24S PDCD6 SNP Missense_Mutation 5 272863 G A 37 61 BRCA TCGA-AR-A24S HIST1H2AE SNP Missense_Mutation 6 26217395 G C 33 91 BRCA TCGA-AR-A24S WDR46 SNP Missense_Mutation 6 33255278 G C 33 60 BRCA TCGA-AR-A24S RELN SNP Missense_Mutation 7 103206817 C T 30 97 BRCA TCGA-AR-A24S NDUFA4 INS Frame_Shift_Ins 7 10978513 - G 11 71 BRCA TCGA-AR-A24S MLL3 SNP Nonsense_Mutation 7 151945451 C A 30 64 BRCA TCGA-AR-A24S AKAP9 SNP Silent 7 91643582 A G 14 47 BRCA TCGA-AR-A24S ADCK5 SNP Missense_Mutation 8 145616986 G A 40 96 BRCA TCGA-AR-A24S ATP6V1B2 SNP Silent 8 20074770 T C 60 58 BRCA TCGA-AR-A24S COL5A1 SNP Silent 9 137707822 A G 2 53 BRCA TCGA-AR-A24T NGF SNP Missense_Mutation 1 115829179 G A 38 65 BRCA TCGA-AR-A24T SPEN DEL Frame_Shift_Del 1 16265897 TCATGATTGTCAT - 54 91 BRCA TCGA-AR-A24T FAM129A SNP Silent 1 184764696 C T 31 47 BRCA TCGA-AR-A24T TCEANC2 SNP Nonsense_Mutation 1 54562090 C T 29 74 BRCA TCGA-AR-A24T OR5I1 SNP Missense_Mutation 11 55703435 C A 17 70 BRCA TCGA-AR-A24T ATXN2 SNP Silent 12 111951204 C T 30 65 BRCA TCGA-AR-A24T CBLN3 SNP Silent 14 24898144 G T 41 55 BRCA TCGA-AR-A24T LINS INS Frame_Shift_Ins 15 101120487 - A 49 56 BRCA TCGA-AR-A24T CDH1 INS Frame_Shift_Ins 16 68857311 - T 32 62 BRCA TCGA-AR-A24T PIEZO2 SNP Missense_Mutation 18 10800452 C T 23 73 BRCA TCGA-AR-A24T WIZ SNP Missense_Mutation 19 15536454 C T 19 94 BRCA TCGA-AR-A24T LILRB2 SNP Missense_Mutation 19 54778665 G A 43 38 BRCA TCGA-AR-A24T FBXO7 SNP Missense_Mutation 22 32889166 G T 41 88 BRCA TCGA-AR-A24T SSX6 SNP Missense_Mutation 23 47972582 G A 40 30 BRCA TCGA-AR-A24T MED12 SNP Nonsense_Mutation 23 70352768 G T 37 95 BRCA TCGA-AR-A24T PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-AR-A24T LARP7 SNP Missense_Mutation 4 113568475 C T 22 65 BRCA TCGA-AR-A24T DNAH5 SNP Nonsense_Mutation 5 13770961 G A 39 61 BRCA TCGA-AR-A24T SLC26A3 SNP Missense_Mutation 7 107408040 C T 19 65 BRCA TCGA-AR-A24T MKLN1 DEL Frame_Shift_Del 7 131128391 GAGA - 37 100 BRCA TCGA-AR-A24T MYOM2 INS Frame_Shift_Ins 8 2020585 - A 27 50 BRCA TCGA-AR-A24T MED27 SNP Missense_Mutation 9 134759459 G C 45 96 BRCA TCGA-AR-A24U FGGY SNP Silent 1 60073504 C T 27 17 BRCA TCGA-AR-A24U PRKAR1A SNP Nonsense_Mutation 17 66526498 C T 23 88 BRCA TCGA-AR-A24U TNFRSF11A SNP Missense_Mutation 18 60036105 G A 38 48 BRCA TCGA-AR-A24U LIPE SNP Silent 19 42911525 C T 29 54 BRCA TCGA-AR-A24U ABCB11 SNP Silent 2 169780189 C T 29 54 BRCA TCGA-AR-A24U TTN SNP Missense_Mutation 2 179438786 C G 29 100 BRCA TCGA-AR-A24U UGP2 SNP Missense_Mutation 2 64117287 G T 33 88 BRCA TCGA-AR-A24U NCOA5 SNP Missense_Mutation 20 44693794 C G 32 99 BRCA TCGA-AR-A24U RUNX1 DEL Frame_Shift_Del 21 36171674 GTGCACA - 44 68 BRCA TCGA-AR-A24U NCF4 SNP Missense_Mutation 22 37266473 C G 23 83 BRCA TCGA-AR-A24U MAGEA12 SNP Silent 23 151900087 G C 33 48 BRCA TCGA-AR-A24U KLHL4 SNP Missense_Mutation 23 86772968 T A 50 56 BRCA TCGA-AR-A24U ABI3BP SNP Missense_Mutation 3 100569509 G A 48 84 BRCA TCGA-AR-A24U IMPG2 SNP Missense_Mutation 3 100963041 C T 17 48 BRCA TCGA-AR-A24U PDCD10 SNP Missense_Mutation 3 167437925 C G 32 97 BRCA TCGA-AR-A24U TM4SF19 SNP Missense_Mutation 3 196054386 C A 28 60 BRCA TCGA-AR-A24U DAXX SNP Missense_Mutation 6 33288266 A C 8 58 BRCA TCGA-AR-A24U TNPO3 SNP Missense_Mutation 7 128658078 G C 33 97 BRCA TCGA-AR-A24U SAMD12 SNP Silent 8 119452167 G A 33 75 BRCA TCGA-AR-A24V TFB2M SNP Missense_Mutation 1 246714526 C T 18 52 BRCA TCGA-AR-A24V DMRTA2 SNP Missense_Mutation 1 50884356 C T 26 65 BRCA TCGA-AR-A24V FAM149B1 SNP Missense_Mutation 10 74987940 C A 30 57 BRCA TCGA-AR-A24V OR4A5 SNP Missense_Mutation 11 51412226 A T 8 78 BRCA TCGA-AR-A24V RBM14 SNP Missense_Mutation 11 66393101 G A 39 63 BRCA TCGA-AR-A24V GCN1L1 SNP Missense_Mutation 12 120597695 G T 41 85 BRCA TCGA-AR-A24V SLCO1C1 SNP Missense_Mutation 12 20852607 G A 33 52 BRCA TCGA-AR-A24V CCDC168 SNP Silent 13 103388683 G A 45 49 BRCA TCGA-AR-A24V CERS3 SNP Silent 15 101019663 T C 49 34 BRCA TCGA-AR-A24V GTF3C1 SNP Missense_Mutation 16 27492404 C A 27 53 BRCA TCGA-AR-A24V BCMO1 SNP Missense_Mutation 16 81314502 C G 17 90 BRCA TCGA-AR-A24V TRPV3 SNP Missense_Mutation 17 3435985 G A 39 95 BRCA TCGA-AR-A24V KRTAP4-16P SNP Missense_Mutation 17 39258126 G T 46 66 BRCA TCGA-AR-A24V SCN4A SNP Silent 17 62019253 G A 38 30 BRCA TCGA-AR-A24V ZBTB4 SNP Missense_Mutation 17 7366623 G A 39 54 BRCA TCGA-AR-A24V CACNG8 SNP Silent 19 54481413 C T 27 51 BRCA TCGA-AR-A24V NMI SNP Silent 2 152139454 A G 7 49 BRCA TCGA-AR-A24V ALS2CR11 SNP Missense_Mutation 2 202446931 G A 40 79 BRCA TCGA-AR-A24V PKDREJ SNP Missense_Mutation 22 46657914 G A 37 52 BRCA TCGA-AR-A24V ZDHHC9 SNP Missense_Mutation 23 128948763 C T 31 83 BRCA TCGA-AR-A24V SRGAP3 SNP Silent 3 9068659 C T 27 29 BRCA TCGA-AR-A24V FRYL SNP Missense_Mutation 4 48591834 T A 58 90 BRCA TCGA-AR-A24V HEXB SNP Missense_Mutation 5 74014695 C G 32 73 BRCA TCGA-AR-A24V AMPH SNP Missense_Mutation 7 38471799 T A 58 80 BRCA TCGA-AR-A24V SNTG1 SNP Silent 8 51503450 C A 29 67 BRCA TCGA-AR-A24V CYP7B1 SNP Silent 8 65528612 T C 60 52 BRCA TCGA-AR-A24W PTEN DEL Frame_Shift_Del 10 89720799 TACT - 57 76 BRCA TCGA-AR-A24W ADCY7 SNP Missense_Mutation 16 50346035 G A 38 69 BRCA TCGA-AR-A24W PRR12 SNP Missense_Mutation 19 50098208 G A 37 88 BRCA TCGA-AR-A24W OPN1MW2 SNP Missense_Mutation 23 153492789 G T 42 46 BRCA TCGA-AR-A24W VCX3B SNP Missense_Mutation 23 8434278 C G 21 33 BRCA TCGA-AR-A24W ATP13A4 SNP Silent 3 193174938 G A 47 79 BRCA TCGA-AR-A24W BNC2 SNP Missense_Mutation 9 16552596 C T 30 100 BRCA TCGA-AR-A24X HRNR SNP Silent 1 152186614 C G 31 35 BRCA TCGA-AR-A24X KIAA0754 SNP Missense_Mutation 1 39878515 A G 4 48 BRCA TCGA-AR-A24X GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-AR-A24X MUC5B SNP Missense_Mutation 11 1251759 C T 27 60 BRCA TCGA-AR-A24X RBM19 SNP Missense_Mutation 12 114395756 G A 37 49 BRCA TCGA-AR-A24X TMEM132C SNP Silent 12 129180412 C A 27 56 BRCA TCGA-AR-A24X EP400 SNP Missense_Mutation 12 132466866 A G 5 63 BRCA TCGA-AR-A24X AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-AR-A24X SAMD4A SNP Missense_Mutation 14 55251070 A G 6 53 BRCA TCGA-AR-A24X PRMT7 SNP Silent 16 68379634 G T 46 41 BRCA TCGA-AR-A24X CDH1 SNP Splice_Site 16 68862076 G T 36 99 BRCA TCGA-AR-A24X CRK SNP Missense_Mutation 17 1340206 C T 23 79 BRCA TCGA-AR-A24X MEGF8 SNP Nonsense_Mutation 19 42875614 C T 31 66 BRCA TCGA-AR-A24X CCDC114 SNP Silent 19 48821779 G A 38 38 BRCA TCGA-AR-A24X LRRC4B SNP Missense_Mutation 19 51021711 G A 40 89 BRCA TCGA-AR-A24X PLEKHH2 SNP Missense_Mutation 2 43971118 G T 41 98 BRCA TCGA-AR-A24X HSCB SNP Missense_Mutation 22 29141935 T A 51 63 BRCA TCGA-AR-A24X ALG13 SNP Missense_Mutation 23 110951473 T C 55 42 BRCA TCGA-AR-A24X KIAA1210 SNP Silent 23 118222466 C A 25 44 BRCA TCGA-AR-A24X ELF4 SNP Missense_Mutation 23 129201171 C T 22 53 BRCA TCGA-AR-A24X RPGR SNP Missense_Mutation 23 38146402 C A 30 48 BRCA TCGA-AR-A24X IQSEC2 DEL In_Frame_Del 23 53264131 TGG - 51 57 BRCA TCGA-AR-A24X ACPP SNP Missense_Mutation 3 132047117 C T 31 71 BRCA TCGA-AR-A24X CARD6 SNP Silent 5 40841761 A C 3 50 BRCA TCGA-AR-A24X HMGCS1 SNP Nonsense_Mutation 5 43294939 G T 36 57 BRCA TCGA-AR-A24X GPR116 SNP Silent 6 46826226 G A 42 54 BRCA TCGA-AR-A24X POLR2J SNP Silent 7 102116678 A G 2 51 BRCA TCGA-AR-A24X FAM188B SNP Missense_Mutation 7 30825399 T A 64 55 BRCA TCGA-AR-A24X SNAPC4 SNP Missense_Mutation 9 139287147 C T 31 84 BRCA TCGA-AR-A24X B4GALT1 SNP Silent 9 33135286 T C 51 49 BRCA TCGA-AR-A24Z MAPKAPK2 INS In_Frame_Ins 1 206858675 - GCC 7 41 BRCA TCGA-AR-A24Z PCNXL2 SNP Missense_Mutation 1 233190018 G T 41 60 BRCA TCGA-AR-A24Z ZNF496 SNP Missense_Mutation 1 247492666 C A 23 65 BRCA TCGA-AR-A24Z RBBP4 SNP Silent 1 33117549 C T 29 67 BRCA TCGA-AR-A24Z MYO3A SNP Missense_Mutation 10 26459429 A C 12 55 BRCA TCGA-AR-A24Z AGAP6 SNP Missense_Mutation 10 51748584 A G 15 51 BRCA TCGA-AR-A24Z STOX1 SNP Missense_Mutation 10 70644582 G C 40 100 BRCA TCGA-AR-A24Z IDE SNP Missense_Mutation 10 94235707 C G 32 98 BRCA TCGA-AR-A24Z PDE3A SNP Missense_Mutation 12 20801709 T A 56 90 BRCA TCGA-AR-A24Z PTPRB SNP Nonsense_Mutation 12 70946687 C A 31 97 BRCA TCGA-AR-A24Z NEK5 SNP Missense_Mutation 13 52693487 G A 43 95 BRCA TCGA-AR-A24Z GINS3 SNP Missense_Mutation 16 58438557 G T 43 100 BRCA TCGA-AR-A24Z MYH8 SNP Missense_Mutation 17 10318441 A G 16 89 BRCA TCGA-AR-A24Z NLK DEL In_Frame_Del 17 26370119 GCAGCCGCAGCAGCGGCT - 42 87 BRCA TCGA-AR-A24Z NLK SNP Silent 17 26370124 C T 23 57 BRCA TCGA-AR-A24Z MAP4K1 SNP Missense_Mutation 19 39087977 G A 38 55 BRCA TCGA-AR-A24Z RGPD3 SNP Missense_Mutation 2 107032319 A T 8 73 BRCA TCGA-AR-A24Z SCN1A SNP Missense_Mutation 2 166909415 G T 46 100 BRCA TCGA-AR-A24Z TTN SNP Missense_Mutation 2 179448488 G C 46 68 BRCA TCGA-AR-A24Z INHA SNP Missense_Mutation 2 220437229 G A 38 48 BRCA TCGA-AR-A24Z COL4A4 SNP Missense_Mutation 2 227979409 G A 47 51 BRCA TCGA-AR-A24Z TTC7A SNP Missense_Mutation 2 47202156 C T 23 71 BRCA TCGA-AR-A24Z TPTE SNP Missense_Mutation 21 10951293 T C 50 64 BRCA TCGA-AR-A24Z COL18A1 SNP Silent 21 46875483 G A 46 76 BRCA TCGA-AR-A24Z CXorf40A SNP Silent 23 148628334 C G 23 26 BRCA TCGA-AR-A24Z ERCC6L SNP Silent 23 71426994 G A 37 47 BRCA TCGA-AR-A24Z SKIL SNP Missense_Mutation 3 170078924 C G 24 50 BRCA TCGA-AR-A24Z YEATS2 DEL In_Frame_Del 3 183493744 GGA - 39 57 BRCA TCGA-AR-A24Z ATP13A4 SNP Splice_site 3 193220428 C A 30 83 BRCA TCGA-AR-A24Z PLXNB1 SNP Missense_Mutation 3 48459737 A T 7 90 BRCA TCGA-AR-A24Z DNAH12 SNP Missense_Mutation 3 57388140 G A 39 51 BRCA TCGA-AR-A24Z LAP3 SNP Missense_Mutation 4 17585198 G C 47 98 BRCA TCGA-AR-A24Z NFXL1 SNP Missense_Mutation 4 47877233 C A 25 56 BRCA TCGA-AR-A24Z DEFB131 SNP Silent 4 9446286 A C 11 47 BRCA TCGA-AR-A24Z MED20 SNP Missense_Mutation 6 41874991 C T 25 100 BRCA TCGA-AR-A24Z MANEA SNP Missense_Mutation 6 96053674 C T 28 52 BRCA TCGA-AR-A24Z ZNF425 SNP Missense_Mutation 7 148801215 G T 38 50 BRCA TCGA-AR-A24Z ZNF425 SNP Missense_Mutation 7 148802311 A C 7 53 BRCA TCGA-AR-A24Z DNAH11 SNP Missense_Mutation 7 21698446 A C 10 52 BRCA TCGA-AR-A24Z IKBKAP DEL Frame_Shift_Del 9 111674571 AG - 3 47 BRCA TCGA-AR-A24Z TYRP1 SNP Missense_Mutation 9 12702372 G A 36 76 BRCA TCGA-AR-A24Z NAIF1 SNP Missense_Mutation 9 130825802 G A 39 79 BRCA TCGA-AR-A24Z ADAMTS13 SNP Missense_Mutation 9 136291344 A T 13 65 BRCA TCGA-AR-A250 UBE4B SNP Missense_Mutation 1 10161225 G A 37 97 BRCA TCGA-AR-A250 WNT2B SNP Silent 1 113058811 C A 30 48 BRCA TCGA-AR-A250 DENND2C SNP Missense_Mutation 1 115130504 G C 33 88 BRCA TCGA-AR-A250 NTRK1 SNP Silent 1 156849829 G A 38 27 BRCA TCGA-AR-A250 SPTA1 SNP Silent 1 158647585 T C 60 54 BRCA TCGA-AR-A250 PPOX SNP Missense_Mutation 1 161137894 G A 46 76 BRCA TCGA-AR-A250 F5 SNP Missense_Mutation 1 169509917 G C 45 86 BRCA TCGA-AR-A250 TNR SNP Missense_Mutation 1 175365832 G A 42 62 BRCA TCGA-AR-A250 ANGEL2 SNP Missense_Mutation 1 213178661 C A 32 98 BRCA TCGA-AR-A250 LRP8 SNP Silent 1 53715175 G A 47 70 BRCA TCGA-AR-A250 ROR1 SNP Missense_Mutation 1 64605929 G C 37 100 BRCA TCGA-AR-A250 KIAA1217 SNP Silent 10 24508619 A G 2 43 BRCA TCGA-AR-A250 LIPK SNP Silent 10 90512357 C G 21 50 BRCA TCGA-AR-A250 EIF4G2 SNP Missense_Mutation 11 10824832 C A 30 100 BRCA TCGA-AR-A250 ACAD8 SNP Missense_Mutation 11 134131253 T C 55 89 BRCA TCGA-AR-A250 OR4X1 SNP Silent 11 48285568 G T 46 40 BRCA TCGA-AR-A250 FAM160A2 SNP Missense_Mutation 11 6235673 G A 46 56 BRCA TCGA-AR-A250 XRRA1 SNP Missense_Mutation 11 74617338 C G 32 55 BRCA TCGA-AR-A250 PRB4 SNP Missense_Mutation 12 11461753 C T 30 52 BRCA TCGA-AR-A250 SLC6A12 SNP Missense_Mutation 12 302499 G A 39 76 BRCA TCGA-AR-A250 EDNRB SNP Missense_Mutation 13 78492504 C T 25 56 BRCA TCGA-AR-A250 RPL10L SNP Missense_Mutation 14 47120792 C T 21 91 BRCA TCGA-AR-A250 RPS6KA5 SNP Missense_Mutation 14 91360826 C A 29 100 BRCA TCGA-AR-A250 LINS SNP Silent 15 101120811 G A 36 49 BRCA TCGA-AR-A250 MAP1A SNP Missense_Mutation 15 43813808 G T 44 100 BRCA TCGA-AR-A250 NEDD4 SNP Missense_Mutation 15 56207669 C T 31 69 BRCA TCGA-AR-A250 KCTD13 SNP Missense_Mutation 16 29937272 G A 43 65 BRCA TCGA-AR-A250 WDR59 SNP Silent 16 74943795 C A 25 55 BRCA TCGA-AR-A250 MLYCD SNP Silent 16 83948758 C T 27 52 BRCA TCGA-AR-A250 ANKRD11 SNP Missense_Mutation 16 89349778 C G 32 87 BRCA TCGA-AR-A250 CACNB1 SNP Missense_Mutation 17 37331819 G A 43 55 BRCA TCGA-AR-A250 CNTD1 SNP Missense_Mutation 17 40951117 C T 30 57 BRCA TCGA-AR-A250 SLC13A5 SNP Missense_Mutation 17 6606341 C T 27 93 BRCA TCGA-AR-A250 KIAA1328 SNP Nonsense_Mutation 18 34415224 C G 29 61 BRCA TCGA-AR-A250 UNC13A SNP Missense_Mutation 19 17740081 C A 25 52 BRCA TCGA-AR-A250 ZSCAN5C SNP Missense_Mutation 19 56717432 C A 29 48 BRCA TCGA-AR-A250 IL37 SNP Splice_site 2 113675354 G T 35 66 BRCA TCGA-AR-A250 UBXN2A SNP Missense_Mutation 2 24194187 A G 4 52 BRCA TCGA-AR-A250 SLC8A1 SNP Missense_Mutation 2 40405590 T C 62 88 BRCA TCGA-AR-A250 USP34 SNP Silent 2 61473500 G A 45 56 BRCA TCGA-AR-A250 POLR1A SNP Missense_Mutation 2 86276113 C T 31 47 BRCA TCGA-AR-A250 TTC28 DEL Splice_Site 22 28692181 CCTA - 30 82 BRCA TCGA-AR-A250 TBC1D8B SNP Missense_Mutation 23 106116842 C G 29 93 BRCA TCGA-AR-A250 CACNA1F SNP Missense_Mutation 23 49071972 C T 32 76 BRCA TCGA-AR-A250 CPXCR1 SNP Missense_Mutation 23 88008722 C T 29 50 BRCA TCGA-AR-A250 PHLDB2 SNP Missense_Mutation 3 111603283 G A 41 62 BRCA TCGA-AR-A250 ROPN1B SNP Silent 3 125694466 C T 31 22 BRCA TCGA-AR-A250 P2RY1 SNP Missense_Mutation 3 152554344 C T 31 99 BRCA TCGA-AR-A250 ABCC5 SNP Missense_Mutation 3 183643468 C G 32 85 BRCA TCGA-AR-A250 SHISA5 SNP Missense_Mutation 3 48538577 C T 29 50 BRCA TCGA-AR-A250 C3orf67 SNP Missense_Mutation 3 58849603 G A 35 78 BRCA TCGA-AR-A250 CRYBG3 SNP Missense_Mutation 3 97596567 G A 33 63 BRCA TCGA-AR-A250 SH3RF1 SNP Missense_Mutation 4 170057504 C T 31 85 BRCA TCGA-AR-A250 FAM193A SNP Missense_Mutation 4 2691340 G C 41 83 BRCA TCGA-AR-A250 TBC1D1 SNP Nonsense_Mutation 4 38020062 C T 29 100 BRCA TCGA-AR-A250 KLB SNP Missense_Mutation 4 39439551 C T 19 73 BRCA TCGA-AR-A250 CCDC99 SNP Missense_Mutation 5 169018164 T A 55 67 BRCA TCGA-AR-A250 CANX SNP Missense_Mutation 5 179149818 C T 22 100 BRCA TCGA-AR-A250 NUP155 SNP Missense_Mutation 5 37310731 C T 27 82 BRCA TCGA-AR-A250 PARP8 SNP Missense_Mutation 5 50090154 C G 32 90 BRCA TCGA-AR-A250 FAM184A SNP Silent 6 119327762 G C 41 57 BRCA TCGA-AR-A250 CCDC90A SNP Silent 6 13791083 C T 19 46 BRCA TCGA-AR-A250 TNFAIP3 SNP Silent 6 138200310 G A 38 40 BRCA TCGA-AR-A250 NHSL1 SNP Nonsense_Mutation 6 138751809 G A 39 51 BRCA TCGA-AR-A250 FANCE SNP Missense_Mutation 6 35423762 C G 17 79 BRCA TCGA-AR-A250 FAM84B SNP Silent 8 127568930 C G 23 46 BRCA TCGA-AR-A250 GSDMC SNP Silent 8 130774954 G C 45 49 BRCA TCGA-AR-A250 TEX10 SNP Missense_Mutation 9 103092306 C G 32 67 BRCA TCGA-AR-A250 CARD9 SNP Silent 9 139259656 G A 38 45 BRCA TCGA-AR-A250 FAM75A3 INS Frame_Shift_Ins 9 40705911 - A 21 43 BRCA TCGA-AR-A250 GNA14 SNP Silent 9 80049397 G C 33 48 BRCA TCGA-AR-A251 CELSR2 SNP Nonsense_Mutation 1 109804509 C G 20 63 BRCA TCGA-AR-A251 SPAG17 SNP Missense_Mutation 1 118574321 C A 32 61 BRCA TCGA-AR-A251 VPS13D SNP Splice_Site 1 12446242 A G 7 75 BRCA TCGA-AR-A251 TXNIP SNP Missense_Mutation 1 145439846 G A 38 78 BRCA TCGA-AR-A251 MTMR11 SNP Splice_site 1 149905591 G A 38 75 BRCA TCGA-AR-A251 SPTA1 SNP Missense_Mutation 1 158619688 C T 23 70 BRCA TCGA-AR-A251 ADCY10 SNP Missense_Mutation 1 167815281 A C 8 40 BRCA TCGA-AR-A251 RCC2 SNP Missense_Mutation 1 17736479 G C 33 65 BRCA TCGA-AR-A251 IVNS1ABP SNP Missense_Mutation 1 185276629 T A 56 61 BRCA TCGA-AR-A251 FAIM3 SNP Missense_Mutation 1 207087275 T G 51 50 BRCA TCGA-AR-A251 WNT9A SNP Silent 1 228113079 T C 55 36 BRCA TCGA-AR-A251 OR2M5 SNP Missense_Mutation 1 248309314 A G 8 64 BRCA TCGA-AR-A251 DHCR24 SNP Silent 1 55319845 G C 47 50 BRCA TCGA-AR-A251 WLS SNP Missense_Mutation 1 68624831 A G 11 91 BRCA TCGA-AR-A251 CLCA1 SNP Silent 1 86952406 C T 21 51 BRCA TCGA-AR-A251 GPR158 SNP Silent 10 25887795 C G 21 42 BRCA TCGA-AR-A251 SVIL SNP Missense_Mutation 10 29812859 C T 27 61 BRCA TCGA-AR-A251 CTNNA3 SNP Missense_Mutation 10 68979558 A T 11 81 BRCA TCGA-AR-A251 C10orf12 SNP Missense_Mutation 10 98741410 C G 32 66 BRCA TCGA-AR-A251 ARHGAP42 SNP Missense_Mutation 11 100814496 C T 24 73 BRCA TCGA-AR-A251 DYNC2H1 SNP Missense_Mutation 11 103128341 G A 39 100 BRCA TCGA-AR-A251 GRIA4 SNP Missense_Mutation 11 105845179 A G 3 63 BRCA TCGA-AR-A251 GRAMD1B SNP Splice_Site 11 123489814 G A 35 75 BRCA TCGA-AR-A251 OR8B8 SNP Splice_site 11 124310048 A G 7 56 BRCA TCGA-AR-A251 ETS1 SNP Silent 11 128354782 G A 36 79 BRCA TCGA-AR-A251 KCNJ11 SNP Silent 11 17408655 C T 21 66 BRCA TCGA-AR-A251 OR51D1 SNP Silent 11 4661473 G T 44 50 BRCA TCGA-AR-A251 OR51F1 SNP Missense_Mutation 11 4790519 C A 30 95 BRCA TCGA-AR-A251 OR4A47 SNP Missense_Mutation 11 48511007 C A 20 57 BRCA TCGA-AR-A251 TRIM64C SNP Missense_Mutation 11 49075726 C T 25 53 BRCA TCGA-AR-A251 OR4C15 SNP Missense_Mutation 11 55322321 G C 46 91 BRCA TCGA-AR-A251 OR5A2 SNP Missense_Mutation 11 59190015 A T 12 56 BRCA TCGA-AR-A251 OR4D9 SNP Missense_Mutation 11 59283150 C G 32 76 BRCA TCGA-AR-A251 PATL1 SNP Missense_Mutation 11 59434423 A C 10 54 BRCA TCGA-AR-A251 AHNAK SNP Missense_Mutation 11 62287791 G C 41 83 BRCA TCGA-AR-A251 PYGM SNP Missense_Mutation 11 64517909 C G 32 94 BRCA TCGA-AR-A251 ATG2A SNP Missense_Mutation 11 64674273 C A 28 63 BRCA TCGA-AR-A251 PPFIA1 SNP Silent 11 70171060 G T 47 46 BRCA TCGA-AR-A251 UHRF1BP1L SNP Missense_Mutation 12 100451948 G T 36 48 BRCA TCGA-AR-A251 BTBD11 SNP Missense_Mutation 12 108006618 T G 55 92 BRCA TCGA-AR-A251 CMKLR1 SNP Missense_Mutation 12 108685751 A T 11 90 BRCA TCGA-AR-A251 GCN1L1 SNP Missense_Mutation 12 120602277 C T 26 68 BRCA TCGA-AR-A251 GYS2 SNP Silent 12 21693464 A C 3 46 BRCA TCGA-AR-A251 PTPRQ SNP Missense_Mutation 12 81013196 T C 52 78 BRCA TCGA-AR-A251 A2ML1 SNP Missense_Mutation 12 8988187 G A 33 70 BRCA TCGA-AR-A251 SACS SNP Missense_Mutation 13 23907783 G A 39 99 BRCA TCGA-AR-A251 MYCBP2 SNP Missense_Mutation 13 77671823 G C 33 74 BRCA TCGA-AR-A251 SLITRK5 SNP Missense_Mutation 13 88327927 G A 40 72 BRCA TCGA-AR-A251 DZIP1 SNP Silent 13 96234512 A G 4 30 BRCA TCGA-AR-A251 METTL3 SNP Missense_Mutation 14 21968764 T C 50 89 BRCA TCGA-AR-A251 FANCM SNP Missense_Mutation 14 45606394 T A 64 53 BRCA TCGA-AR-A251 SYNE2 SNP Missense_Mutation 14 64469831 G T 43 82 BRCA TCGA-AR-A251 SPTB SNP Missense_Mutation 14 65253616 C T 30 51 BRCA TCGA-AR-A251 POMT2 SNP Missense_Mutation 14 77767549 C A 19 54 BRCA TCGA-AR-A251 VPS13C SNP Missense_Mutation 15 62219354 A C 6 89 BRCA TCGA-AR-A251 RSL1D1 SNP Missense_Mutation 16 11935823 C T 29 52 BRCA TCGA-AR-A251 ABCC1 SNP Silent 16 16150074 G A 35 83 BRCA TCGA-AR-A251 SMG1 SNP Silent 16 18828730 G A 35 59 BRCA TCGA-AR-A251 OTOA SNP Missense_Mutation 16 21716582 A T 6 46 BRCA TCGA-AR-A251 VWA3A SNP Missense_Mutation 16 22128179 G T 33 55 BRCA TCGA-AR-A251 ABCA3 SNP Missense_Mutation 16 2354098 A G 3 75 BRCA TCGA-AR-A251 RBBP6 DEL In_Frame_Del 16 24578494 AAGATC - 1 49 BRCA TCGA-AR-A251 BCKDK SNP Missense_Mutation 16 31120644 G T 42 73 BRCA TCGA-AR-A251 ZNF423 SNP Missense_Mutation 16 49671283 C A 26 94 BRCA TCGA-AR-A251 FAM65A SNP Missense_Mutation 16 67575419 G T 35 54 BRCA TCGA-AR-A251 ZNF286A SNP Missense_Mutation 17 15619893 T G 52 50 BRCA TCGA-AR-A251 NCOR1 SNP Missense_Mutation 17 15978996 C G 32 69 BRCA TCGA-AR-A251 SPAG5 SNP Missense_Mutation 17 26905075 C G 29 78 BRCA TCGA-AR-A251 MYO1D SNP Silent 17 30981576 C T 24 72 BRCA TCGA-AR-A251 GPATCH8 SNP Missense_Mutation 17 42483296 C A 28 62 BRCA TCGA-AR-A251 SCRN2 SNP Missense_Mutation 17 45916933 C T 22 98 BRCA TCGA-AR-A251 VEZF1 INS In_Frame_Ins 17 56056604 - TGCTGC 60 43 BRCA TCGA-AR-A251 KCNJ16 SNP Missense_Mutation 17 68128271 G T 38 31 BRCA TCGA-AR-A251 SRP68 DEL Splice_Site 17 74036486 TGGCCCAGACTTACCTTATTGTCCTTGACT - 51 45 BRCA TCGA-AR-A251 RHBDF2 SNP Missense_Mutation 17 74474958 G T 41 55 BRCA TCGA-AR-A251 TRAPPC8 SNP Missense_Mutation 18 29480942 G C 47 95 BRCA TCGA-AR-A251 DNMT1 SNP Missense_Mutation 19 10260544 G A 39 84 BRCA TCGA-AR-A251 AP3D1 SNP Silent 19 2127191 G C 47 69 BRCA TCGA-AR-A251 BLVRB SNP Missense_Mutation 19 40957355 C A 26 68 BRCA TCGA-AR-A251 CYP2F1P SNP Silent 19 41324810 G T 35 53 BRCA TCGA-AR-A251 C5AR1 SNP Missense_Mutation 19 47823226 C G 31 49 BRCA TCGA-AR-A251 KCNA7 SNP Missense_Mutation 19 49573516 A C 10 88 BRCA TCGA-AR-A251 GRHL1 SNP Missense_Mutation 2 10130840 T C 50 75 BRCA TCGA-AR-A251 SPAG16 SNP Missense_Mutation 2 214160797 T C 49 72 BRCA TCGA-AR-A251 CXCR1 SNP Silent 2 219029617 G C 46 61 BRCA TCGA-AR-A251 MFF SNP Missense_Mutation 2 228217280 A G 10 80 BRCA TCGA-AR-A251 SLC16A14 SNP Missense_Mutation 2 230924032 C T 29 86 BRCA TCGA-AR-A251 AGXT SNP Silent 2 241810813 G A 36 57 BRCA TCGA-AR-A251 SLC8A1 SNP Missense_Mutation 2 40655750 C A 24 65 BRCA TCGA-AR-A251 KCNG3 SNP Missense_Mutation 2 42671481 G A 34 100 BRCA TCGA-AR-A251 PREPL SNP Missense_Mutation 2 44569611 C G 28 62 BRCA TCGA-AR-A251 LMAN2L SNP Silent 2 97405748 C G 19 70 BRCA TCGA-AR-A251 SIRPA SNP Missense_Mutation 20 1918063 G C 34 73 BRCA TCGA-AR-A251 CST1 SNP Missense_Mutation 20 23731390 G T 44 54 BRCA TCGA-AR-A251 C20orf43 SNP Missense_Mutation 20 55093254 A G 6 89 BRCA TCGA-AR-A251 CTCFL SNP Missense_Mutation 20 56099035 T A 54 56 BRCA TCGA-AR-A251 LSM14B SNP Missense_Mutation 20 60699699 C T 30 84 BRCA TCGA-AR-A251 APP SNP Missense_Mutation 21 27284272 C G 29 83 BRCA TCGA-AR-A251 PRDM15 SNP Silent 21 43279763 G A 39 30 BRCA TCGA-AR-A251 KRTAP10-9 SNP Missense_Mutation 21 46047942 C G 30 73 BRCA TCGA-AR-A251 DIP2A SNP Missense_Mutation 21 47974547 G A 40 85 BRCA TCGA-AR-A251 POTEH SNP Missense_Mutation 22 16287713 C G 24 51 BRCA TCGA-AR-A251 LIMK2 SNP Missense_Mutation 22 31658194 G T 43 82 BRCA TCGA-AR-A251 SEPT3 SNP Silent 22 42388724 C G 25 57 BRCA TCGA-AR-A251 RGAG1 SNP Missense_Mutation 23 109694662 A G 4 55 BRCA TCGA-AR-A251 MAGEB6 SNP Missense_Mutation 23 26212565 C T 19 9 BRCA TCGA-AR-A251 SMC1A DNP Missense_Mutation 23 53423213 GG AT 35 53 BRCA TCGA-AR-A251 PAGE3 SNP Missense_Mutation 23 55287030 C G 32 49 BRCA TCGA-AR-A251 CBLB SNP Missense_Mutation 3 105464837 G A 48 100 BRCA TCGA-AR-A251 NR1I2 SNP Splice_site 3 119533827 G A 41 61 BRCA TCGA-AR-A251 ALDH1L1 SNP Missense_Mutation 3 125854388 G C 34 75 BRCA TCGA-AR-A251 IGSF10 SNP Silent 3 151166527 A T 1 49 BRCA TCGA-AR-A251 SLC4A7 SNP Missense_Mutation 3 27493965 C T 30 91 BRCA TCGA-AR-A251 ACOX2 SNP Missense_Mutation 3 58508254 T C 55 50 BRCA TCGA-AR-A251 ARL13B SNP Missense_Mutation 3 93755594 G C 33 75 BRCA TCGA-AR-A251 PRSS12 SNP Missense_Mutation 4 119204213 A G 7 77 BRCA TCGA-AR-A251 DCHS2 SNP Silent 4 155157392 C T 29 53 BRCA TCGA-AR-A251 FGG SNP Missense_Mutation 4 155533009 C G 32 86 BRCA TCGA-AR-A251 SULT1B1 SNP Missense_Mutation 4 70599960 G A 42 79 BRCA TCGA-AR-A251 MARCH6 SNP Missense_Mutation 5 10394874 C G 20 87 BRCA TCGA-AR-A251 ADAMTS19 SNP Silent 5 128977608 C T 21 53 BRCA TCGA-AR-A251 SEC24A SNP Missense_Mutation 5 134032874 G T 44 86 BRCA TCGA-AR-A251 ARAP3 SNP Missense_Mutation 5 141051164 C A 20 61 BRCA TCGA-AR-A251 TRIO SNP Missense_Mutation 5 14498736 C A 26 48 BRCA TCGA-AR-A251 GRIA1 SNP Missense_Mutation 5 153149761 A G 10 62 BRCA TCGA-AR-A251 HMGCS1 SNP Missense_Mutation 5 43297126 C A 32 72 BRCA TCGA-AR-A251 IL6ST SNP Missense_Mutation 5 55264182 T G 54 57 BRCA TCGA-AR-A251 NSUN2 SNP Silent 5 6600147 C G 29 65 BRCA TCGA-AR-A251 VCAN SNP Silent 5 82807965 G A 35 54 BRCA TCGA-AR-A251 FAM172A SNP Missense_Mutation 5 93294552 G A 34 94 BRCA TCGA-AR-A251 L3MBTL3 SNP Missense_Mutation 6 130381217 G T 36 81 BRCA TCGA-AR-A251 PDE7B SNP Missense_Mutation 6 136512854 A T 3 84 BRCA TCGA-AR-A251 HIST1H2BH SNP Silent 6 26252226 T G 53 59 BRCA TCGA-AR-A251 DNAH8 SNP Nonsense_Mutation 6 38854684 G T 47 100 BRCA TCGA-AR-A251 PTCHD4 SNP Missense_Mutation 6 48036082 C G 30 99 BRCA TCGA-AR-A251 COL19A1 SNP Missense_Mutation 6 70646698 G C 47 58 BRCA TCGA-AR-A251 KHDC3L SNP Missense_Mutation 6 74073327 C A 18 49 BRCA TCGA-AR-A251 DDX43 SNP Missense_Mutation 6 74125920 C T 18 60 BRCA TCGA-AR-A251 ZCWPW1 SNP Missense_Mutation 7 100007160 A C 10 55 BRCA TCGA-AR-A251 MUC17 SNP Missense_Mutation 7 100675533 G C 33 42 BRCA TCGA-AR-A251 GALNTL5 SNP Missense_Mutation 7 151664434 T A 55 32 BRCA TCGA-AR-A251 HDAC9 SNP Missense_Mutation 7 18767317 C T 22 74 BRCA TCGA-AR-A251 RIMS2 DEL Frame_Shift_Del 8 104928686 ACATTTGAGGAAGTGTACA - 6 71 BRCA TCGA-AR-A251 MYOM2 SNP Nonsense_Mutation 8 2054293 C G 20 62 BRCA TCGA-AR-A251 DOCK5 SNP Missense_Mutation 8 25240200 C G 26 100 BRCA TCGA-AR-A251 KAT6A SNP Missense_Mutation 8 41790483 C A 28 98 BRCA TCGA-AR-A251 CNGB3 SNP Missense_Mutation 8 87680252 T G 57 68 BRCA TCGA-AR-A251 RAD54B SNP Missense_Mutation 8 95470589 C G 32 66 BRCA TCGA-AR-A251 ZNF462 SNP Missense_Mutation 9 109688792 C G 22 99 BRCA TCGA-AR-A251 ST6GALNAC6 SNP Missense_Mutation 9 130648843 C G 24 55 BRCA TCGA-AR-A251 CARD9 SNP Silent 9 139264848 C A 21 62 BRCA TCGA-AR-A251 FREM1 SNP Silent 9 14792819 G T 47 47 BRCA TCGA-AR-A251 RFX3 SNP Missense_Mutation 9 3346722 G A 41 83 BRCA TCGA-AR-A251 TLN1 SNP Silent 9 35713254 G C 39 23 BRCA TCGA-AR-A251 KANK1 SNP Silent 9 742357 C T 29 52 BRCA TCGA-AR-A251 FAM75D1 SNP Missense_Mutation 9 84608674 G A 40 31 BRCA TCGA-AR-A252 DDR2 SNP Missense_Mutation 1 162731140 G A 39 100 BRCA TCGA-AR-A252 CX3CL1 SNP Missense_Mutation 16 57413659 G A 38 68 BRCA TCGA-AR-A252 CDK10 SNP Missense_Mutation 16 89758243 A G 7 86 BRCA TCGA-AR-A252 MYH2 SNP Missense_Mutation 17 10428881 G A 42 74 BRCA TCGA-AR-A252 GIGYF2 SNP Nonsense_Mutation 2 233655500 C T 23 83 BRCA TCGA-AR-A252 TMF1 SNP Silent 3 69072340 T C 64 45 BRCA TCGA-AR-A252 SDK1 SNP Missense_Mutation 7 4272965 G A 39 57 BRCA TCGA-AR-A254 TNR SNP Missense_Mutation 1 175323569 C T 30 71 BRCA TCGA-AR-A254 FAM171A1 SNP Missense_Mutation 10 15255282 C T 19 76 BRCA TCGA-AR-A254 SLC29A3 SNP Silent 10 73111334 C A 30 56 BRCA TCGA-AR-A254 SLC29A3 SNP Missense_Mutation 10 73115895 C A 30 81 BRCA TCGA-AR-A254 TRIM6 SNP Missense_Mutation 11 5631431 T A 51 31 BRCA TCGA-AR-A254 ANKRD52 SNP Splice_site 12 56638218 T A 52 60 BRCA TCGA-AR-A254 VWA3A SNP Silent 16 22161156 G T 38 12 BRCA TCGA-AR-A254 TADA2A SNP Nonsense_Mutation 17 35822222 C T 29 98 BRCA TCGA-AR-A254 CDC6 SNP Silent 17 38450220 G A 33 61 BRCA TCGA-AR-A254 TP53 SNP Nonsense_Mutation 17 7579315 G T 46 61 BRCA TCGA-AR-A254 RTN2 SNP Missense_Mutation 19 45997940 G A 38 61 BRCA TCGA-AR-A254 CARD8 SNP Missense_Mutation 19 48737790 C T 30 38 BRCA TCGA-AR-A254 MYH14 SNP Missense_Mutation 19 50764750 G T 41 93 BRCA TCGA-AR-A254 SYT3 SNP Silent 19 51129221 G A 39 46 BRCA TCGA-AR-A254 CDC42EP3 SNP Silent 2 37873401 C T 31 15 BRCA TCGA-AR-A254 TSPEAR SNP Missense_Mutation 21 45924690 G C 44 95 BRCA TCGA-AR-A254 PLCH1 SNP Missense_Mutation 3 155241748 C T 30 97 BRCA TCGA-AR-A254 TRA2B SNP Missense_Mutation 3 185643364 C T 27 100 BRCA TCGA-AR-A254 DNAH5 SNP Missense_Mutation 5 13901632 T A 54 70 BRCA TCGA-AR-A254 PCDHB15 SNP Missense_Mutation 5 140626710 G A 37 82 BRCA TCGA-AR-A254 SYNPO SNP Missense_Mutation 5 150029320 G A 48 69 BRCA TCGA-AR-A254 SYNE1 SNP Silent 6 152647219 G A 40 50 BRCA TCGA-AR-A254 FNDC1 SNP Silent 6 159621606 C T 23 79 BRCA TCGA-AR-A254 CTTNBP2 SNP Silent 7 117431492 C T 31 44 BRCA TCGA-AR-A254 DLX6 SNP Missense_Mutation 7 96635680 T A 53 80 BRCA TCGA-AR-A254 KIAA1429 SNP Missense_Mutation 8 95500985 A C 5 60 BRCA TCGA-AR-A254 TRIM32 SNP Missense_Mutation 9 119460572 T A 60 89 BRCA TCGA-AR-A254 NOTCH1 SNP Missense_Mutation 9 139390870 C T 26 68 BRCA TCGA-AR-A255 TRIM33 SNP Missense_Mutation 1 114944055 A G 5 94 BRCA TCGA-AR-A255 FAM20B SNP Missense_Mutation 1 179019422 G A 37 100 BRCA TCGA-AR-A255 CACNA1E SNP Missense_Mutation 1 181767626 C A 32 70 BRCA TCGA-AR-A255 HMCN1 SNP Missense_Mutation 1 186050516 G A 37 99 BRCA TCGA-AR-A255 GREM2 SNP Missense_Mutation 1 240656696 G A 38 63 BRCA TCGA-AR-A255 DPH2 SNP Missense_Mutation 1 44436697 G A 42 94 BRCA TCGA-AR-A255 WDR96 SNP Missense_Mutation 10 105948072 C A 32 56 BRCA TCGA-AR-A255 PLCE1 SNP Splice_site 10 95993811 G C 44 70 BRCA TCGA-AR-A255 PGR SNP Missense_Mutation 11 100933223 C T 31 99 BRCA TCGA-AR-A255 ATM SNP Nonsense_Mutation 11 108196269 C T 29 74 BRCA TCGA-AR-A255 AMBRA1 SNP Nonsense_Mutation 11 46564000 C A 30 83 BRCA TCGA-AR-A255 WDR66 SNP Missense_Mutation 12 122413496 G C 37 67 BRCA TCGA-AR-A255 SFSWAP SNP Silent 12 132241104 A C 7 29 BRCA TCGA-AR-A255 SLC38A4 SNP Nonsense_Mutation 12 47163175 G A 40 71 BRCA TCGA-AR-A255 MLL2 DEL In_Frame_Del 12 49427620 TGG - 55 66 BRCA TCGA-AR-A255 OR4Q3 SNP Silent 14 20216051 C A 30 49 BRCA TCGA-AR-A255 GTF2A1 SNP Missense_Mutation 14 81658982 G T 48 76 BRCA TCGA-AR-A255 CCDC88C SNP Missense_Mutation 14 91779543 C T 30 64 BRCA TCGA-AR-A255 NDUFAF1 SNP Missense_Mutation 15 41687079 C T 30 100 BRCA TCGA-AR-A255 TIGD7 SNP Silent 16 3349850 A T 1 48 BRCA TCGA-AR-A255 PKD1L2 SNP Splice_Site 16 81193423 C A 32 86 BRCA TCGA-AR-A255 ABCC3 SNP Missense_Mutation 17 48750941 C A 27 69 BRCA TCGA-AR-A255 CEP192 SNP Missense_Mutation 18 13056429 C G 26 55 BRCA TCGA-AR-A255 PKN1 SNP Missense_Mutation 19 14574672 A G 8 61 BRCA TCGA-AR-A255 ZNF546 SNP Silent 19 40521493 G A 39 45 BRCA TCGA-AR-A255 NCR1 SNP Missense_Mutation 19 55420747 G A 39 41 BRCA TCGA-AR-A255 POLR1B SNP Silent 2 113325615 G A 48 58 BRCA TCGA-AR-A255 KIF5C SNP Missense_Mutation 2 149798136 G A 45 100 BRCA TCGA-AR-A255 SCN2A SNP Missense_Mutation 2 166201270 G T 47 100 BRCA TCGA-AR-A255 ZC3H15 SNP Missense_Mutation 2 187370543 A G 14 80 BRCA TCGA-AR-A255 ADAM23 SNP Silent 2 207435499 G T 47 52 BRCA TCGA-AR-A255 CNNM4 SNP Missense_Mutation 2 97427918 C A 29 62 BRCA TCGA-AR-A255 RALGAPA2 SNP Silent 20 20553660 G A 45 53 BRCA TCGA-AR-A255 TTPAL SNP Missense_Mutation 20 43113021 G A 34 100 BRCA TCGA-AR-A255 KIAA1210 SNP Missense_Mutation 23 118221586 G T 46 55 BRCA TCGA-AR-A255 SAGE1 SNP Missense_Mutation 23 134994548 G A 45 57 BRCA TCGA-AR-A255 RPGR INS Frame_Shift_Ins 23 38145797 - T 20 72 BRCA TCGA-AR-A255 CPNE4 SNP Missense_Mutation 3 131293958 G T 33 94 BRCA TCGA-AR-A255 PPP2R3A SNP Silent 3 135721399 G A 46 48 BRCA TCGA-AR-A255 XRN1 SNP Nonsense_Mutation 3 142090130 C A 32 84 BRCA TCGA-AR-A255 PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA TCGA-AR-A255 TWF2 SNP Missense_Mutation 3 52265497 C A 18 85 BRCA TCGA-AR-A255 HTR1F SNP Missense_Mutation 3 88039993 G A 47 52 BRCA TCGA-AR-A255 FILIP1L DEL Frame_Shift_Del 3 99648853 GCCTATGACCTCATCTCGA - 46 49 BRCA TCGA-AR-A255 TET2 SNP Missense_Mutation 4 106190872 G C 33 100 BRCA TCGA-AR-A255 PRDM5 SNP Missense_Mutation 4 121698355 G A 39 76 BRCA TCGA-AR-A255 SPATA4 SNP Missense_Mutation 4 177116659 C G 32 39 BRCA TCGA-AR-A255 FAT1 SNP Missense_Mutation 4 187540311 G T 47 69 BRCA TCGA-AR-A255 SLC4A4 SNP Missense_Mutation 4 72205101 G A 33 87 BRCA TCGA-AR-A255 IL17B SNP Silent 5 148756493 G A 43 56 BRCA TCGA-AR-A255 PCLO SNP Missense_Mutation 7 82544944 C T 31 100 BRCA TCGA-AR-A255 CSMD3 SNP Silent 8 113988070 A G 16 82 BRCA TCGA-AR-A255 HHLA1 SNP Missense_Mutation 8 133101771 A G 12 78 BRCA TCGA-AR-A255 CNTLN SNP Missense_Mutation 9 17416099 T G 60 54 BRCA TCGA-AR-A255 ADAMTSL1 SNP Missense_Mutation 9 18888027 C A 32 61 BRCA TCGA-AR-A256 PSMA5 SNP Silent 1 109957929 C T 32 78 BRCA TCGA-AR-A256 OVGP1 SNP Missense_Mutation 1 111966173 A C 3 53 BRCA TCGA-AR-A256 NGF SNP Missense_Mutation 1 115829056 G A 38 62 BRCA TCGA-AR-A256 GJA5 SNP Missense_Mutation 1 147230581 C T 22 54 BRCA TCGA-AR-A256 PSMD4 SNP Missense_Mutation 1 151227268 G C 41 93 BRCA TCGA-AR-A256 HCN3 SNP Missense_Mutation 1 155255534 G C 48 96 BRCA TCGA-AR-A256 KIAA0907 SNP Missense_Mutation 1 155899583 G C 35 74 BRCA TCGA-AR-A256 TTC24 SNP Missense_Mutation 1 156551191 G A 35 55 BRCA TCGA-AR-A256 ETV3 SNP Missense_Mutation 1 157095097 C T 18 57 BRCA TCGA-AR-A256 IGSF8 SNP Missense_Mutation 1 160063683 C G 24 75 BRCA TCGA-AR-A256 F5 SNP Missense_Mutation 1 169498986 C G 28 62 BRCA TCGA-AR-A256 ASTN1 SNP Missense_Mutation 1 177001636 G A 41 97 BRCA TCGA-AR-A256 LAMC1 SNP Missense_Mutation 1 183083678 A G 4 65 BRCA TCGA-AR-A256 CAPN2 SNP Missense_Mutation 1 223934702 C G 29 76 BRCA TCGA-AR-A256 LYST SNP Silent 1 235860498 G T 33 56 BRCA TCGA-AR-A256 ACTN2 SNP Silent 1 236918429 G T 47 67 BRCA TCGA-AR-A256 KIF26B SNP Silent 1 245850803 C T 29 56 BRCA TCGA-AR-A256 OR13G1 SNP Missense_Mutation 1 247835593 G T 41 48 BRCA TCGA-AR-A256 GPR3 DEL Frame_Shift_Del 1 27720951 TGCCGCATCGTCTGCCGCCATGCCCAGCAGAT - 55 92 BRCA TCGA-AR-A256 MACF1 SNP Silent 1 39851426 G A 47 59 BRCA TCGA-AR-A256 CHD5 SNP Missense_Mutation 1 6181593 G T 44 53 BRCA TCGA-AR-A256 RPE65 SNP Missense_Mutation 1 68903958 C T 19 84 BRCA TCGA-AR-A256 PPRC1 SNP Missense_Mutation 10 103909715 G A 48 73 BRCA TCGA-AR-A256 HSPA12A SNP Silent 10 118439100 C T 27 18 BRCA TCGA-AR-A256 ENKUR SNP Missense_Mutation 10 25284628 C T 32 77 BRCA TCGA-AR-A256 C10orf68 SNP Missense_Mutation 10 33000568 G C 45 50 BRCA TCGA-AR-A256 RASSF4 SNP Missense_Mutation 10 45487443 A T 10 90 BRCA TCGA-AR-A256 FRMPD2 SNP Missense_Mutation 10 49386172 G A 47 52 BRCA TCGA-AR-A256 ANK3 SNP Missense_Mutation 10 61831529 G C 35 69 BRCA TCGA-AR-A256 RUFY2 SNP Silent 10 70153888 T A 54 54 BRCA TCGA-AR-A256 ITIH5 SNP Silent 10 7618855 G T 45 52 BRCA TCGA-AR-A256 IDE SNP Missense_Mutation 10 94274755 C G 29 100 BRCA TCGA-AR-A256 CTR9 SNP Missense_Mutation 11 10792118 G A 33 100 BRCA TCGA-AR-A256 ACAT1 SNP Missense_Mutation 11 108017053 A C 4 93 BRCA TCGA-AR-A256 BRSK2 SNP Missense_Mutation 11 1464595 G T 40 73 BRCA TCGA-AR-A256 OTOG SNP Missense_Mutation 11 17573591 G T 42 49 BRCA TCGA-AR-A256 TSPAN32 DEL Frame_Shift_Del 11 2337833 CTGTGGTTTGCCATCCG - 24 60 BRCA TCGA-AR-A256 OSBPL5 SNP Silent 11 3147733 C A 31 61 BRCA TCGA-AR-A256 F2 DEL Frame_Shift_Del 11 46748272 CGACCTCTGTT - 27 67 BRCA TCGA-AR-A256 OR5D14 SNP Missense_Mutation 11 55563515 C T 24 50 BRCA TCGA-AR-A256 MS4A7 SNP Missense_Mutation 11 60160252 A T 2 45 BRCA TCGA-AR-A256 GANAB SNP Missense_Mutation 11 62402465 C A 17 51 BRCA TCGA-AR-A256 CDC42BPG SNP Nonsense_Mutation 11 64606639 C A 30 96 BRCA TCGA-AR-A256 EFEMP2 SNP Missense_Mutation 11 65638053 C G 20 62 BRCA TCGA-AR-A256 PC SNP Missense_Mutation 11 66620009 A C 10 88 BRCA TCGA-AR-A256 NLRP14 SNP Missense_Mutation 11 7063859 C G 25 87 BRCA TCGA-AR-A256 LRRC32 SNP Missense_Mutation 11 76370691 C G 25 61 BRCA TCGA-AR-A256 RIMBP2 SNP Splice_Site 12 130898669 C A 18 97 BRCA TCGA-AR-A256 P2RX2 SNP Missense_Mutation 12 133198288 T G 57 56 BRCA TCGA-AR-A256 CMAS SNP Nonsense_Mutation 12 22214246 G T 41 97 BRCA TCGA-AR-A256 CASC1 SNP Splice_site 12 25311497 T C 54 72 BRCA TCGA-AR-A256 ITPR2 SNP Splice_site 12 26877590 T A 63 90 BRCA TCGA-AR-A256 BIN2 SNP Silent 12 51685681 C T 32 50 BRCA TCGA-AR-A256 ESPL1 SNP Missense_Mutation 12 53676930 A G 12 62 BRCA TCGA-AR-A256 OR6C3 SNP Missense_Mutation 12 55725942 T A 52 60 BRCA TCGA-AR-A256 ACSM4 SNP Silent 12 7473395 T G 61 45 BRCA TCGA-AR-A256 NAV3 SNP Missense_Mutation 12 78591132 T C 54 93 BRCA TCGA-AR-A256 ZNF705A SNP Missense_Mutation 12 8328517 C A 19 45 BRCA TCGA-AR-A256 RXFP2 SNP Missense_Mutation 13 32340136 T G 64 74 BRCA TCGA-AR-A256 PHF11 SNP Missense_Mutation 13 50098309 T G 52 61 BRCA TCGA-AR-A256 RTL1 SNP Silent 14 101350433 G A 33 62 BRCA TCGA-AR-A256 AHNAK2 SNP Missense_Mutation 14 105412163 C G 19 46 BRCA TCGA-AR-A256 VTI1B SNP Splice_Site 14 68126640 C G 28 97 BRCA TCGA-AR-A256 RIN3 SNP Missense_Mutation 14 93022208 C G 24 61 BRCA TCGA-AR-A256 LYSMD4 DEL Frame_Shift_Del 15 100269499 AAAGTAGACC - 13 57 BRCA TCGA-AR-A256 LRRK1 SNP Missense_Mutation 15 101555536 A G 9 78 BRCA TCGA-AR-A256 THBS1 SNP Silent 15 39884927 T C 51 53 BRCA TCGA-AR-A256 C15orf23 SNP Missense_Mutation 15 40675104 A T 12 50 BRCA TCGA-AR-A256 AP4E1 SNP Missense_Mutation 15 51233946 C T 29 97 BRCA TCGA-AR-A256 DNAJA4 SNP Silent 15 78566657 C T 31 32 BRCA TCGA-AR-A256 ADAMTSL3 SNP Missense_Mutation 15 84568455 G C 33 73 BRCA TCGA-AR-A256 UNC45A SNP Missense_Mutation 15 91493734 A G 16 90 BRCA TCGA-AR-A256 PDXDC1 SNP Silent 16 15103550 C T 24 54 BRCA TCGA-AR-A256 IL27 SNP Missense_Mutation 16 28515309 G T 42 52 BRCA TCGA-AR-A256 ABCC11 SNP Missense_Mutation 16 48245083 A T 1 44 BRCA TCGA-AR-A256 CCDC135 SNP Missense_Mutation 16 57741527 C G 31 27 BRCA TCGA-AR-A256 FAM65A SNP Nonsense_Mutation 16 67580080 C T 21 89 BRCA TCGA-AR-A256 KRTAP4-7 SNP Missense_Mutation 17 39240781 C G 18 50 BRCA TCGA-AR-A256 PSME3 SNP Silent 17 40993571 C T 25 98 BRCA TCGA-AR-A256 WFIKKN2 SNP Silent 17 48917309 G A 39 28 BRCA TCGA-AR-A256 LRRC37A3 SNP Splice_Site 17 62865212 C T 17 65 BRCA TCGA-AR-A256 ABCA6 SNP Splice_Site 17 67080498 T C 55 87 BRCA TCGA-AR-A256 GPR142 SNP Missense_Mutation 17 72368470 G T 44 67 BRCA TCGA-AR-A256 TP53 INS Frame_Shift_Ins 17 7579359 - GA 39 49 BRCA TCGA-AR-A256 WRAP53 SNP Silent 17 7592245 C T 31 46 BRCA TCGA-AR-A256 TMC6 DEL In_Frame_Del 17 76121839 AGGTCGTACAGGCGG - 7 70 BRCA TCGA-AR-A256 FASN SNP Missense_Mutation 17 80041432 C T 30 94 BRCA TCGA-AR-A256 METRNL SNP Silent 17 81043153 C T 19 50 BRCA TCGA-AR-A256 MYH10 SNP Missense_Mutation 17 8390870 G A 38 57 BRCA TCGA-AR-A256 ABCA7 DEL Frame_Shift_Del 19 1061826 TT - 60 83 BRCA TCGA-AR-A256 MAN2B1 SNP Missense_Mutation 19 12760800 G T 39 73 BRCA TCGA-AR-A256 RAD23A SNP Nonsense_Mutation 19 13059325 C G 29 74 BRCA TCGA-AR-A256 SIN3B SNP Missense_Mutation 19 16964996 C G 24 83 BRCA TCGA-AR-A256 IFI30 SNP Missense_Mutation 19 18286477 G C 36 53 BRCA TCGA-AR-A256 LSR SNP Missense_Mutation 19 35758116 C G 22 71 BRCA TCGA-AR-A256 CEACAM5 SNP Missense_Mutation 19 42221424 G A 41 39 BRCA TCGA-AR-A256 TMEM145 SNP Missense_Mutation 19 42821924 C G 20 75 BRCA TCGA-AR-A256 PLIN4 SNP Missense_Mutation 19 4510826 A T 11 54 BRCA TCGA-AR-A256 KLK14 DEL In_Frame_Del 19 51582880 CCTGACGAACCACGCGCAGCACCTGCTGGGTGG - 18 67 BRCA TCGA-AR-A256 LILRA2 SNP Silent 19 55087518 C T 29 50 BRCA TCGA-AR-A256 SSC5D SNP Missense_Mutation 19 56029455 C A 22 51 BRCA TCGA-AR-A256 NLRP13 SNP Missense_Mutation 19 56423120 C G 24 61 BRCA TCGA-AR-A256 MUC16 SNP Missense_Mutation 19 8974096 G T 46 52 BRCA TCGA-AR-A256 MUC16 SNP Silent 19 9004897 C T 32 49 BRCA TCGA-AR-A256 TTN SNP Nonsense_Mutation 2 179614480 A T 13 90 BRCA TCGA-AR-A256 ORC2 SNP Splice_site 2 201776110 C G 22 80 BRCA TCGA-AR-A256 PTPRN SNP Silent 2 220155281 C A 26 52 BRCA TCGA-AR-A256 RESP18 DEL Splice_Site 2 220193616 TTCAATGCCTATTTTAAACTCAATACTTA - 64 45 BRCA TCGA-AR-A256 UGT1A4 SNP Missense_Mutation 2 234627956 T C 57 51 BRCA TCGA-AR-A256 DPYSL5 SNP Silent 2 27165483 G A 46 46 BRCA TCGA-AR-A256 BIRC6 SNP Missense_Mutation 2 32654312 T C 50 54 BRCA TCGA-AR-A256 LHCGR SNP Missense_Mutation 2 48915906 C G 25 61 BRCA TCGA-AR-A256 USP34 SNP Missense_Mutation 2 61515816 G A 48 96 BRCA TCGA-AR-A256 CYP26B1 SNP Missense_Mutation 2 72360334 G T 34 77 BRCA TCGA-AR-A256 SLC4A5 SNP Splice_site 2 74462341 C T 18 60 BRCA TCGA-AR-A256 LBX2 SNP Silent 2 74725096 G A 43 50 BRCA TCGA-AR-A256 SDCBP2 SNP Missense_Mutation 20 1299057 A G 14 80 BRCA TCGA-AR-A256 ADAM33 SNP Silent 20 3655440 G C 33 82 BRCA TCGA-AR-A256 TGM2 SNP Missense_Mutation 20 36759526 C A 23 77 BRCA TCGA-AR-A256 TBC1D20 SNP Missense_Mutation 20 420924 G T 47 94 BRCA TCGA-AR-A256 FAM65C SNP Missense_Mutation 20 49208921 C G 27 62 BRCA TCGA-AR-A256 FAM65C SNP Missense_Mutation 20 49236530 C G 24 76 BRCA TCGA-AR-A256 PHACTR3 SNP Missense_Mutation 20 58349443 G C 41 78 BRCA TCGA-AR-A256 ZNF280B SNP Missense_Mutation 22 22842463 G A 48 91 BRCA TCGA-AR-A256 MICALL1 SNP Missense_Mutation 22 38308003 G C 40 65 BRCA TCGA-AR-A256 CHADL SNP Silent 22 41635564 G A 43 62 BRCA TCGA-AR-A256 SERHL2 SNP Missense_Mutation 22 42962330 C A 21 54 BRCA TCGA-AR-A256 CELSR1 SNP Splice_Site 22 46790160 C T 32 89 BRCA TCGA-AR-A256 HCFC1 SNP Missense_Mutation 23 153225483 G T 40 75 BRCA TCGA-AR-A256 KIAA1524 SNP Nonsense_Mutation 3 108301047 G T 46 52 BRCA TCGA-AR-A256 SYN2 SNP Silent 3 12203643 C T 17 77 BRCA TCGA-AR-A256 SLC12A8 SNP Silent 3 124829135 C G 19 38 BRCA TCGA-AR-A256 SI SNP Missense_Mutation 3 164733798 T A 58 53 BRCA TCGA-AR-A256 MECOM SNP Missense_Mutation 3 168834507 A G 15 93 BRCA TCGA-AR-A256 TNIK SNP Missense_Mutation 3 170875269 G C 46 100 BRCA TCGA-AR-A256 DCUN1D1 SNP Missense_Mutation 3 182665361 C T 32 97 BRCA TCGA-AR-A256 VWA5B2 SNP Missense_Mutation 3 183959139 G T 45 46 BRCA TCGA-AR-A256 CPN2 SNP Silent 3 194063051 G A 43 44 BRCA TCGA-AR-A256 MFI2 SNP Missense_Mutation 3 196744075 C T 31 61 BRCA TCGA-AR-A256 LZTFL1 SNP Missense_Mutation 3 45872443 C G 28 61 BRCA TCGA-AR-A256 DALRD3 SNP Missense_Mutation 3 49054878 G A 47 40 BRCA TCGA-AR-A256 ITIH1 SNP Missense_Mutation 3 52822258 C A 18 48 BRCA TCGA-AR-A256 SYNPR SNP Splice_Site 3 63466633 G A 44 93 BRCA TCGA-AR-A256 NFKB1 SNP Missense_Mutation 4 103500040 C T 31 50 BRCA TCGA-AR-A256 SYNPO2 SNP Missense_Mutation 4 119951302 C A 17 60 BRCA TCGA-AR-A256 FBXW7 SNP Missense_Mutation 4 153247168 T C 49 93 BRCA TCGA-AR-A256 ARAP2 SNP Silent 4 36130231 C A 17 48 BRCA TCGA-AR-A256 EVC2 SNP Nonsense_Mutation 4 5624640 G A 47 63 BRCA TCGA-AR-A256 JAKMIP1 SNP Missense_Mutation 4 6055709 A C 9 63 BRCA TCGA-AR-A256 FER SNP Missense_Mutation 5 108516525 A G 11 91 BRCA TCGA-AR-A256 ZNF608 DEL In_Frame_Del 5 124080554 CTT - 24 72 BRCA TCGA-AR-A256 PPP2CA DEL Frame_Shift_Del 5 133541707 CCACCAATTCTAAACAGTT - 26 100 BRCA TCGA-AR-A256 PCDHGB4 SNP Silent 5 140769218 A T 15 69 BRCA TCGA-AR-A256 ARAP3 SNP Missense_Mutation 5 141051281 G T 33 72 BRCA TCGA-AR-A256 SLIT3 SNP Missense_Mutation 5 168727598 G C 44 74 BRCA TCGA-AR-A256 NSD1 SNP Silent 5 176562116 C T 24 58 BRCA TCGA-AR-A256 ADCY2 SNP Silent 5 7709446 A G 6 43 BRCA TCGA-AR-A256 VGLL2 SNP Missense_Mutation 6 117589357 T C 61 87 BRCA TCGA-AR-A256 STXBP5 SNP Silent 6 147636833 A C 15 53 BRCA TCGA-AR-A256 TCP10 SNP Missense_Mutation 6 167789534 T A 60 51 BRCA TCGA-AR-A256 MICB SNP Silent 6 31474128 A C 6 36 BRCA TCGA-AR-A256 DOM3Z SNP Missense_Mutation 6 31937797 C T 19 77 BRCA TCGA-AR-A256 MDGA1 SNP Silent 6 37620061 G A 48 69 BRCA TCGA-AR-A256 CUL7 DEL Frame_Shift_Del 6 43018922 GCTCACATCTGCCAGCTGA - 42 55 BRCA TCGA-AR-A256 XPO5 INS Frame_Shift_Ins 6 43535019 - C 54 70 BRCA TCGA-AR-A256 XPO5 DEL In_Frame_Del 6 43535023 AGA - 15 44 BRCA TCGA-AR-A256 PAQR8 SNP Silent 6 52268806 C G 23 35 BRCA TCGA-AR-A256 BAI3 SNP Missense_Mutation 6 70071303 C A 18 96 BRCA TCGA-AR-A256 UBE3D SNP Silent 6 83728709 G A 45 68 BRCA TCGA-AR-A256 NT5E SNP Missense_Mutation 6 86203631 G A 39 96 BRCA TCGA-AR-A256 MUC17 SNP Missense_Mutation 7 100696289 T A 55 73 BRCA TCGA-AR-A256 SERPINE1 SNP Missense_Mutation 7 100777023 C G 26 91 BRCA TCGA-AR-A256 PNPLA8 SNP Missense_Mutation 7 108131874 T C 56 69 BRCA TCGA-AR-A256 GCC1 SNP Missense_Mutation 7 127222558 G A 33 62 BRCA TCGA-AR-A256 STK31 SNP Missense_Mutation 7 23809335 C G 20 61 BRCA TCGA-AR-A256 RPA3 SNP Missense_Mutation 7 7676652 T A 53 52 BRCA TCGA-AR-A256 ATP5J2-PTCD1 INS Frame_Shift_Ins 7 99026733 - CGTAC 42 81 BRCA TCGA-AR-A256 KCNV1 SNP Missense_Mutation 8 110980364 C T 32 91 BRCA TCGA-AR-A256 KCNQ3 SNP Splice_Site 8 133182580 C A 26 97 BRCA TCGA-AR-A256 COL22A1 SNP Missense_Mutation 8 139890242 G T 43 98 BRCA TCGA-AR-A256 ESCO2 SNP Silent 8 27634128 G C 45 54 BRCA TCGA-AR-A256 TM2D2 SNP Missense_Mutation 8 38852899 C G 32 98 BRCA TCGA-AR-A256 TCEB1 SNP Missense_Mutation 8 74859004 G A 45 98 BRCA TCGA-AR-A256 BAAT DEL In_Frame_Del 9 104125223 TAGGTAAATAGCCATAGA - 61 54 BRCA TCGA-AR-A256 KIAA0368 SNP Missense_Mutation 9 114176865 C A 26 67 BRCA TCGA-AR-A256 FKBP15 SNP Silent 9 115931533 G C 45 50 BRCA TCGA-AR-A256 PRPF4 SNP Missense_Mutation 9 116053191 A C 2 66 BRCA TCGA-AR-A256 MAPKAP1 SNP Missense_Mutation 9 128246850 T C 58 91 BRCA TCGA-AR-A256 TBC1D13 SNP Missense_Mutation 9 131553046 T C 55 89 BRCA TCGA-AR-A256 LINGO2 SNP Silent 9 27950343 G A 43 56 BRCA TCGA-AR-A256 UBE2R2 SNP Missense_Mutation 9 33900241 G A 45 100 BRCA TCGA-B6-A0I2 ASAP3 SNP Silent 1 23759634 C A 27 41 BRCA TCGA-B6-A0I2 SMYD3 SNP Missense_Mutation 1 246091315 C A 28 86 BRCA TCGA-B6-A0I2 CNN3 SNP Missense_Mutation 1 95368739 A C 16 76 BRCA TCGA-B6-A0I2 DKK3 SNP Silent 11 12020297 G C 33 56 BRCA TCGA-B6-A0I2 API5 SNP Missense_Mutation 11 43340343 G C 33 88 BRCA TCGA-B6-A0I2 LOC120824 SNP Missense_Mutation 11 49000623 C G 32 52 BRCA TCGA-B6-A0I2 MARK2 SNP Nonsense_Mutation 11 63669754 C T 17 84 BRCA TCGA-B6-A0I2 KCTD21 SNP Missense_Mutation 11 77884970 C A 18 69 BRCA TCGA-B6-A0I2 PRB2 SNP Missense_Mutation 12 11546633 T A 63 39 BRCA TCGA-B6-A0I2 RARG SNP Missense_Mutation 12 53607025 G A 39 99 BRCA TCGA-B6-A0I2 LRP1 SNP Silent 12 57567573 C A 29 82 BRCA TCGA-B6-A0I2 ENOX1 SNP Missense_Mutation 13 43930276 C T 31 97 BRCA TCGA-B6-A0I2 PRKD1 SNP Nonsense_Mutation 14 30107713 C A 31 87 BRCA TCGA-B6-A0I2 SLC8A3 SNP Silent 14 70515731 C A 22 36 BRCA TCGA-B6-A0I2 ADCK1 SNP Nonsense_Mutation 14 78325602 C T 23 67 BRCA TCGA-B6-A0I2 CASC5 SNP Missense_Mutation 15 40947129 G C 34 51 BRCA TCGA-B6-A0I2 CCDC33 SNP Missense_Mutation 15 74588246 A G 9 48 BRCA TCGA-B6-A0I2 AGBL1 SNP Splice_site 15 86838639 C T 23 73 BRCA TCGA-B6-A0I2 ACSM2B SNP Silent 16 20548586 C T 27 51 BRCA TCGA-B6-A0I2 NMRAL1 SNP Silent 16 4511847 G C 45 58 BRCA TCGA-B6-A0I2 IGF2BP1 SNP Missense_Mutation 17 47117353 G A 34 99 BRCA TCGA-B6-A0I2 MRPS7 SNP Missense_Mutation 17 73261843 G C 45 100 BRCA TCGA-B6-A0I2 TP53 INS Frame_Shift_Ins 17 7578446 - GGCCA 51 60 BRCA TCGA-B6-A0I2 GREB1L SNP Missense_Mutation 18 19020328 G A 36 59 BRCA TCGA-B6-A0I2 MIB1 SNP Nonsense_Mutation 18 19426998 C T 31 86 BRCA TCGA-B6-A0I2 DCC SNP Nonsense_Mutation 18 50450136 G T 45 74 BRCA TCGA-B6-A0I2 CDC37 SNP Missense_Mutation 19 10514100 G A 40 90 BRCA TCGA-B6-A0I2 RNASEH2A SNP Missense_Mutation 19 12923995 G A 41 84 BRCA TCGA-B6-A0I2 CPAMD8 SNP Missense_Mutation 19 17039789 C G 32 72 BRCA TCGA-B6-A0I2 DPF1 SNP Missense_Mutation 19 38708105 T G 51 68 BRCA TCGA-B6-A0I2 GMFG SNP Missense_Mutation 19 39826138 C G 32 89 BRCA TCGA-B6-A0I2 CNTNAP5 SNP Missense_Mutation 2 125555837 C A 32 62 BRCA TCGA-B6-A0I2 SF3B1 SNP Missense_Mutation 2 198267459 G A 34 100 BRCA TCGA-B6-A0I2 DNAH6 SNP Silent 2 84949763 C A 21 78 BRCA TCGA-B6-A0I2 LOC344065 SNP Missense_Mutation 2 95880530 G C 45 58 BRCA TCGA-B6-A0I2 R3HDML SNP Missense_Mutation 20 42966018 G A 39 96 BRCA TCGA-B6-A0I2 IFNAR1 SNP Missense_Mutation 21 34715607 C T 28 78 BRCA TCGA-B6-A0I2 SLC25A18 SNP Missense_Mutation 22 18069986 C G 32 96 BRCA TCGA-B6-A0I2 LZTR1 SNP Splice_site 22 21342406 C T 19 56 BRCA TCGA-B6-A0I2 RTDR1 SNP Missense_Mutation 22 23401684 G A 38 51 BRCA TCGA-B6-A0I2 ATP11C SNP Silent 23 138901509 G A 33 56 BRCA TCGA-B6-A0I2 PRICKLE3 SNP Missense_Mutation 23 49032267 C T 29 59 BRCA TCGA-B6-A0I2 CACNA1F SNP Missense_Mutation 23 49071852 G A 39 82 BRCA TCGA-B6-A0I2 MYO10 SNP Missense_Mutation 5 16671048 C G 30 100 BRCA TCGA-B6-A0I2 KIAA0947 SNP Missense_Mutation 5 5463316 T G 57 46 BRCA TCGA-B6-A0I2 HIST1H4G SNP Silent 6 26247074 G C 45 52 BRCA TCGA-B6-A0I2 ZNF425 SNP Missense_Mutation 7 148801933 C G 22 49 BRCA TCGA-B6-A0I2 ACTR3B SNP Missense_Mutation 7 152513624 C T 19 82 BRCA TCGA-B6-A0I2 PPP1R17 SNP Missense_Mutation 7 31735126 G C 33 72 BRCA TCGA-B6-A0I2 CSMD1 SNP Silent 8 3855451 G A 45 59 BRCA TCGA-B6-A0I2 CEP110 SNP Missense_Mutation 9 123935965 C T 27 76 BRCA TCGA-B6-A0I2 SMARCA2 SNP Missense_Mutation 9 2076304 G C 45 91 BRCA TCGA-B6-A0I2 KIF27 SNP Missense_Mutation 9 86503485 G C 45 60 BRCA TCGA-B6-A0I5 FLG SNP Missense_Mutation 1 152281273 G T 46 49 BRCA TCGA-B6-A0I5 MPP7 SNP Missense_Mutation 10 28436429 A G 10 69 BRCA TCGA-B6-A0I5 GATA3 DEL Splice_site 10 8115701 GATT - 33 99 BRCA TCGA-B6-A0I5 ABCC8 SNP Splice_site 11 17434293 C T 22 100 BRCA TCGA-B6-A0I5 FADS2 SNP Missense_Mutation 11 61607902 C T 21 91 BRCA TCGA-B6-A0I5 ABCD2 SNP Missense_Mutation 12 39947886 C T 27 76 BRCA TCGA-B6-A0I5 CNP SNP Missense_Mutation 17 40123967 G A 33 74 BRCA TCGA-B6-A0I5 MYO5B SNP Silent 18 47373601 C T 23 25 BRCA TCGA-B6-A0I5 L3MBTL4 SNP Silent 18 6171939 A G 9 51 BRCA TCGA-B6-A0I5 ANKRD12 SNP Missense_Mutation 18 9258309 A G 8 55 BRCA TCGA-B6-A0I5 CRYGD SNP Silent 2 208988842 G A 41 55 BRCA TCGA-B6-A0I5 C20orf91 SNP Missense_Mutation 20 26062002 G C 33 51 BRCA TCGA-B6-A0I5 KIAA1755 SNP Silent 20 36856567 G A 38 47 BRCA TCGA-B6-A0I5 KIAA1644 SNP Missense_Mutation 22 44681464 C T 23 67 BRCA TCGA-B6-A0I5 BCOR SNP Missense_Mutation 23 39923606 C T 27 65 BRCA TCGA-B6-A0I5 ZMYM3 SNP Missense_Mutation 23 70464311 G A 38 71 BRCA TCGA-B6-A0I5 PIK3CA SNP Missense_Mutation 3 178936095 A G 7 90 BRCA TCGA-B6-A0I5 SFMBT1 SNP Missense_Mutation 3 52954632 A C 6 61 BRCA TCGA-B6-A0I5 ZNF454 SNP Missense_Mutation 5 178392823 G C 48 93 BRCA TCGA-B6-A0I5 MUC22 SNP Silent 6 30997597 T A 55 39 BRCA TCGA-B6-A0I5 MLL3 INS Splice_Site 7 151859199 - A 61 57 BRCA TCGA-B6-A0I5 PDAP1 SNP Splice_site 7 98997926 C T 23 95 BRCA TCGA-B6-A0I5 PKHD1L1 SNP Missense_Mutation 8 110442249 C T 27 55 BRCA TCGA-B6-A0I5 NEFM SNP Missense_Mutation 8 24774812 G A 40 57 BRCA TCGA-B6-A0I5 CSMD1 SNP Silent 8 2823394 A G 12 47 BRCA TCGA-B6-A0I6 SARS SNP Missense_Mutation 1 109773582 T G 57 90 BRCA TCGA-B6-A0I6 HMGCS2 SNP Missense_Mutation 1 120311433 A G 7 69 BRCA TCGA-B6-A0I6 TARS2 SNP Silent 1 150471489 C T 26 51 BRCA TCGA-B6-A0I6 ITLN1 SNP Silent 1 160851091 G A 36 63 BRCA TCGA-B6-A0I6 RXRG SNP Silent 1 165370566 G A 45 61 BRCA TCGA-B6-A0I6 HMCN1 SNP Missense_Mutation 1 186057340 C T 17 67 BRCA TCGA-B6-A0I6 KIF21B SNP Missense_Mutation 1 200957999 T A 58 90 BRCA TCGA-B6-A0I6 ARID4B SNP Missense_Mutation 1 235392550 T C 62 75 BRCA TCGA-B6-A0I6 RLF SNP Missense_Mutation 1 40702980 A G 12 57 BRCA TCGA-B6-A0I6 EDN2 SNP Missense_Mutation 1 41948218 C G 23 66 BRCA TCGA-B6-A0I6 ZSWIM5 SNP Missense_Mutation 1 45553711 C T 19 99 BRCA TCGA-B6-A0I6 H6PD SNP Nonsense_Mutation 1 9305183 G T 47 81 BRCA TCGA-B6-A0I6 ZEB1 SNP Missense_Mutation 10 31810284 C A 17 68 BRCA TCGA-B6-A0I6 LUZP2 SNP Missense_Mutation 11 24750742 G T 34 54 BRCA TCGA-B6-A0I6 OR1S1 SNP Silent 11 57983026 C T 27 48 BRCA TCGA-B6-A0I6 PYGM SNP Missense_Mutation 11 64518862 G A 39 81 BRCA TCGA-B6-A0I6 PC SNP Missense_Mutation 11 66638537 C G 18 94 BRCA TCGA-B6-A0I6 UCP2 SNP Nonsense_Mutation 11 73686076 G T 46 50 BRCA TCGA-B6-A0I6 FAT3 SNP Missense_Mutation 11 92538383 G T 33 72 BRCA TCGA-B6-A0I6 CCDC82 SNP Silent 11 96117312 G A 41 46 BRCA TCGA-B6-A0I6 TCTN2 SNP Missense_Mutation 12 124156618 C T 23 72 BRCA TCGA-B6-A0I6 PTPRO SNP Missense_Mutation 12 15673165 T C 53 86 BRCA TCGA-B6-A0I6 PDE3A SNP Missense_Mutation 12 20790155 G A 42 94 BRCA TCGA-B6-A0I6 KCNA6 SNP Silent 12 4920089 C T 17 69 BRCA TCGA-B6-A0I6 GPD1 SNP Missense_Mutation 12 50500636 C T 17 100 BRCA TCGA-B6-A0I6 DGKA DEL Frame_Shift_Del 12 56332737 TGAATACCTGGATTGGGA - 55 41 BRCA TCGA-B6-A0I6 KLHL33 SNP Missense_Mutation 14 20898533 T A 59 79 BRCA TCGA-B6-A0I6 GOLGA6L2 SNP Missense_Mutation 15 23685059 G C 42 26 BRCA TCGA-B6-A0I6 CELF6 SNP Silent 15 72579624 A G 8 57 BRCA TCGA-B6-A0I6 ARID3B SNP Missense_Mutation 15 74836338 G A 42 55 BRCA TCGA-B6-A0I6 C15orf39 SNP Missense_Mutation 15 75498847 G T 35 60 BRCA TCGA-B6-A0I6 CASKIN1 SNP Missense_Mutation 16 2235149 C A 22 75 BRCA TCGA-B6-A0I6 NCOR1 SNP Missense_Mutation 17 15965075 C G 32 97 BRCA TCGA-B6-A0I6 LRRC37A SNP Silent 17 44408126 G A 42 54 BRCA TCGA-B6-A0I6 VMP1 SNP Silent 17 57915716 A G 2 80 BRCA TCGA-B6-A0I6 RNF213 SNP Missense_Mutation 17 78362440 A G 10 86 BRCA TCGA-B6-A0I6 LAMA1 SNP Missense_Mutation 18 6997880 C G 17 86 BRCA TCGA-B6-A0I6 IL12RB1 SNP Nonsense_Mutation 19 18186625 G A 40 42 BRCA TCGA-B6-A0I6 ZNF808 DEL Frame_Shift_Del 19 53056828 AAAAACAGGAAGTACACATGAGAGA - 5 48 BRCA TCGA-B6-A0I6 TTN SNP Missense_Mutation 2 179583919 A T 8 27 BRCA TCGA-B6-A0I6 CDK15 SNP Missense_Mutation 2 202744849 A T 16 61 BRCA TCGA-B6-A0I6 GLB1L SNP Missense_Mutation 2 220101969 C T 30 57 BRCA TCGA-B6-A0I6 VIT SNP Missense_Mutation 2 36994266 C A 18 45 BRCA TCGA-B6-A0I6 THADA SNP Missense_Mutation 2 43793935 C T 20 53 BRCA TCGA-B6-A0I6 DNAH6 SNP Missense_Mutation 2 84800708 C G 18 85 BRCA TCGA-B6-A0I6 LYG2 SNP Missense_Mutation 2 99860525 T A 60 47 BRCA TCGA-B6-A0I6 ZNF335 SNP Missense_Mutation 20 44587919 G C 33 83 BRCA TCGA-B6-A0I6 LOC100288117 SNP Silent 21 20230229 G C 35 88 BRCA TCGA-B6-A0I6 CABIN1 SNP Splice_site 22 24445682 G A 47 81 BRCA TCGA-B6-A0I6 MYO18B SNP Silent 22 26224905 C T 24 59 BRCA TCGA-B6-A0I6 APOL2 SNP Missense_Mutation 22 36623937 C A 23 46 BRCA TCGA-B6-A0I6 PKDREJ SNP Silent 22 46654201 T G 57 26 BRCA TCGA-B6-A0I6 GABRA3 SNP Missense_Mutation 23 151358338 G A 40 94 BRCA TCGA-B6-A0I6 MAGEB3 SNP Silent 23 30254047 T C 54 56 BRCA TCGA-B6-A0I6 HUWE1 SNP Missense_Mutation 23 53563526 C G 17 82 BRCA TCGA-B6-A0I6 MED12 SNP Splice_site 23 70361814 A G 15 82 BRCA TCGA-B6-A0I6 KLHL4 SNP Missense_Mutation 23 86880629 C A 18 67 BRCA TCGA-B6-A0I6 EFCAB12 SNP Silent 3 129134218 C T 24 49 BRCA TCGA-B6-A0I6 COL6A5 SNP Missense_Mutation 3 130142716 G A 37 0 BRCA TCGA-B6-A0I6 LRRC34 SNP Missense_Mutation 3 169514046 G C 36 36 BRCA TCGA-B6-A0I6 SLC7A14 SNP Missense_Mutation 3 170198759 C T 29 78 BRCA TCGA-B6-A0I6 PDZRN3 SNP Silent 3 73657824 G T 47 53 BRCA TCGA-B6-A0I6 WHSC1 SNP Missense_Mutation 4 1941401 G A 46 74 BRCA TCGA-B6-A0I6 ATP10D SNP Missense_Mutation 4 47593232 G A 41 56 BRCA TCGA-B6-A0I6 FAM53C SNP Missense_Mutation 5 137681244 C T 19 39 BRCA TCGA-B6-A0I6 DSE SNP Missense_Mutation 6 116757125 G T 43 100 BRCA TCGA-B6-A0I6 DST SNP Silent 6 56484032 T A 53 45 BRCA TCGA-B6-A0I6 SLC12A9 SNP Silent 7 100456721 C T 23 25 BRCA TCGA-B6-A0I6 ENSG00000225705 SNP Missense_Mutation 7 48886461 A C 8 69 BRCA TCGA-B6-A0I6 FGL2 SNP Missense_Mutation 7 76825866 G T 44 70 BRCA TCGA-B6-A0I6 BMP1 SNP Missense_Mutation 8 22037949 G A 46 68 BRCA TCGA-B6-A0I6 TEX15 SNP Missense_Mutation 8 30704902 T G 54 52 BRCA TCGA-B6-A0I6 PRKDC SNP Missense_Mutation 8 48792059 A T 8 67 BRCA TCGA-B6-A0I6 MATN2 SNP Missense_Mutation 8 98943194 G T 33 50 BRCA TCGA-B6-A0I6 TBC1D2 SNP Missense_Mutation 9 100961795 G T 44 60 BRCA TCGA-B6-A0I6 CRAT SNP Missense_Mutation 9 131866570 G A 34 71 BRCA TCGA-B6-A0I6 LCN8 SNP Silent 9 139651510 G C 39 49 BRCA TCGA-B6-A0I6 LOC100288765 SNP Missense_Mutation 9 69846251 G C 33 76 BRCA TCGA-B6-A0I8 GPR61 SNP Silent 1 110086349 C G 22 48 BRCA TCGA-B6-A0I8 MOV10 SNP Missense_Mutation 1 113239380 G A 41 100 BRCA TCGA-B6-A0I8 YY1AP1 SNP Missense_Mutation 1 155638533 G C 36 77 BRCA TCGA-B6-A0I8 SLC25A44 SNP Silent 1 156169758 C A 29 59 BRCA TCGA-B6-A0I8 IQGAP3 SNP Missense_Mutation 1 156502784 C T 28 68 BRCA TCGA-B6-A0I8 NTRK1 SNP Missense_Mutation 1 156848984 C A 25 94 BRCA TCGA-B6-A0I8 SPTA1 SNP Missense_Mutation 1 158606472 G A 40 74 BRCA TCGA-B6-A0I8 GPR161 SNP Missense_Mutation 1 168066094 T C 55 92 BRCA TCGA-B6-A0I8 METTL11B SNP Missense_Mutation 1 170136716 G T 48 79 BRCA TCGA-B6-A0I8 METTL13 SNP Silent 1 171763540 G A 42 50 BRCA TCGA-B6-A0I8 ASTN1 SNP Silent 1 177133537 G A 37 64 BRCA TCGA-B6-A0I8 NAV1 SNP Missense_Mutation 1 201618306 G T 34 59 BRCA TCGA-B6-A0I8 ROR1 SNP Missense_Mutation 1 64515405 C T 19 87 BRCA TCGA-B6-A0I8 SEMA4G SNP Missense_Mutation 10 102740951 G C 33 58 BRCA TCGA-B6-A0I8 ARHGAP12 SNP Missense_Mutation 10 32197724 T A 52 50 BRCA TCGA-B6-A0I8 TMEM72 INS Frame_Shift_Ins 10 45430274 - TTTTTCCATGGAGGTTTTTC 42 53 BRCA TCGA-B6-A0I8 ANK3 SNP Missense_Mutation 10 61832621 G A 47 100 BRCA TCGA-B6-A0I8 PRF1 SNP Silent 10 72360527 G A 39 22 BRCA TCGA-B6-A0I8 ATP5C1 DEL In_Frame_Del 10 7841091 TAACAGCAGCTGGGAAAG - 53 90 BRCA TCGA-B6-A0I8 ZBED5 DEL Frame_Shift_Del 11 10876310 ATTTGATTCAGACACA - 8 49 BRCA TCGA-B6-A0I8 SYT8 DEL Frame_Shift_Del 11 1857139 G - 47 61 BRCA TCGA-B6-A0I8 MADD SNP Missense_Mutation 11 47331104 G A 45 95 BRCA TCGA-B6-A0I8 CATSPER1 SNP Missense_Mutation 11 65792950 G C 45 47 BRCA TCGA-B6-A0I8 LRRK2 SNP Missense_Mutation 12 40757328 G A 47 71 BRCA TCGA-B6-A0I8 FAM186A SNP Missense_Mutation 12 50744938 T A 59 40 BRCA TCGA-B6-A0I8 LOC100287535 SNP Missense_Mutation 12 8371816 T A 58 51 BRCA TCGA-B6-A0I8 UTP14C SNP Missense_Mutation 13 52605143 G T 41 82 BRCA TCGA-B6-A0I8 NPAS3 DEL Frame_Shift_Del 14 34243697 GAGTAAATAT - 37 100 BRCA TCGA-B6-A0I8 MDGA2 SNP Silent 14 47530633 T A 51 44 BRCA TCGA-B6-A0I8 KCNH5 SNP Silent 14 63473181 A G 8 54 BRCA TCGA-B6-A0I8 SLC10A1 SNP Missense_Mutation 14 70245196 C T 17 98 BRCA TCGA-B6-A0I8 GOLGA6L2 SNP Missense_Mutation 15 23685820 G T 46 NaN BRCA TCGA-B6-A0I8 ATP8B4 SNP Missense_Mutation 15 50264841 G A 40 81 BRCA TCGA-B6-A0I8 DIS3L SNP Missense_Mutation 15 66587367 C G 22 92 BRCA TCGA-B6-A0I8 KIAA0430 SNP Missense_Mutation 16 15692831 C T 19 64 BRCA TCGA-B6-A0I8 GGA2 SNP Missense_Mutation 16 23492053 C T 20 74 BRCA TCGA-B6-A0I8 ERN2 SNP Missense_Mutation 16 23706244 G T 44 68 BRCA TCGA-B6-A0I8 AMDHD2 SNP Missense_Mutation 16 2580462 T G 55 50 BRCA TCGA-B6-A0I8 LONP2 SNP Missense_Mutation 16 48295483 T G 58 77 BRCA TCGA-B6-A0I8 NCOR1 SNP Nonsense_Mutation 17 15943800 G A 45 93 BRCA TCGA-B6-A0I8 SGK494 SNP Nonsense_Mutation 17 26938416 C A 21 95 BRCA TCGA-B6-A0I8 MRPL45 SNP Silent 17 36474595 T C 51 56 BRCA TCGA-B6-A0I8 GPATCH8 SNP Missense_Mutation 17 42477506 G T 42 68 BRCA TCGA-B6-A0I8 TEX14 SNP Missense_Mutation 17 56700371 C G 27 86 BRCA TCGA-B6-A0I8 GDPD1 SNP Silent 17 57352538 G A 47 50 BRCA TCGA-B6-A0I8 VMP1 SNP Silent 17 57917167 C G 31 41 BRCA TCGA-B6-A0I8 HELZ SNP Missense_Mutation 17 65105258 G A 37 73 BRCA TCGA-B6-A0I8 OTOP2 SNP Missense_Mutation 17 72927076 C G 18 55 BRCA TCGA-B6-A0I8 POTEC SNP Missense_Mutation 18 14542680 C A 30 47 BRCA TCGA-B6-A0I8 ZNF236 SNP Silent 18 74631946 C T 19 28 BRCA TCGA-B6-A0I8 COL5A3 SNP Silent 19 10088137 G A 42 22 BRCA TCGA-B6-A0I8 OR7A10 DEL Frame_Shift_Del 19 14952138 CACCTGATTAATTT - 21 44 BRCA TCGA-B6-A0I8 CPAMD8 SNP Missense_Mutation 19 17057997 A T 2 85 BRCA TCGA-B6-A0I8 PDCD2L SNP Silent 19 34900086 A C 7 46 BRCA TCGA-B6-A0I8 NPHS1 SNP Missense_Mutation 19 36330494 G C 47 85 BRCA TCGA-B6-A0I8 PSMC4 SNP Missense_Mutation 19 40480261 C T 26 93 BRCA TCGA-B6-A0I8 NLRP9 SNP Missense_Mutation 19 56244140 T C 54 59 BRCA TCGA-B6-A0I8 ZNF749 SNP Silent 19 57953288 C T 32 54 BRCA TCGA-B6-A0I8 MUC16 SNP Silent 19 9065990 A G 11 44 BRCA TCGA-B6-A0I8 IL1R2 DEL Frame_Shift_Del 2 102642664 GTTGTCCATAATACCCTGA - 48 41 BRCA TCGA-B6-A0I8 ZRANB3 SNP Silent 2 136023137 A C 7 48 BRCA TCGA-B6-A0I8 MYCN SNP Missense_Mutation 2 16086025 T A 56 91 BRCA TCGA-B6-A0I8 ATF2 SNP Missense_Mutation 2 175939354 G T 48 94 BRCA TCGA-B6-A0I8 TTN SNP Missense_Mutation 2 179449278 C G 31 72 BRCA TCGA-B6-A0I8 TTN DEL Frame_Shift_Del 2 179597176 ACAAGTTTGC - 2 91 BRCA TCGA-B6-A0I8 ZC3H15 SNP Missense_Mutation 2 187370515 G A 45 100 BRCA TCGA-B6-A0I8 ANKAR SNP Missense_Mutation 2 190602506 C G 32 74 BRCA TCGA-B6-A0I8 MAP2 SNP Missense_Mutation 2 210559945 G T 35 53 BRCA TCGA-B6-A0I8 FAM228A SNP Nonsense_Mutation 2 24406369 C T 19 44 BRCA TCGA-B6-A0I8 DNAJC27 SNP Splice_Site 2 25174424 C G 32 100 BRCA TCGA-B6-A0I8 TSSC1 SNP Missense_Mutation 2 3261182 G A 42 99 BRCA TCGA-B6-A0I8 FAM98A DEL Splice_Site 2 33810513 T - 53 90 BRCA TCGA-B6-A0I8 ATL2 SNP Silent 2 38527429 T C 63 49 BRCA TCGA-B6-A0I8 CEP68 SNP Missense_Mutation 2 65299440 C G 22 50 BRCA TCGA-B6-A0I8 PMEPA1 SNP Missense_Mutation 20 56227380 T A 50 71 BRCA TCGA-B6-A0I8 PMEPA1 DEL In_Frame_Del 20 56227388 GTCACT - 44 78 BRCA TCGA-B6-A0I8 CHGB SNP Missense_Mutation 20 5904091 C A 18 45 BRCA TCGA-B6-A0I8 CLDN17 SNP Silent 21 31538837 T A 55 38 BRCA TCGA-B6-A0I8 ERG SNP Silent 21 39817428 G C 47 59 BRCA TCGA-B6-A0I8 IGSF5 SNP Missense_Mutation 21 41142941 G T 41 48 BRCA TCGA-B6-A0I8 MYH9 SNP Silent 22 36681952 C G 22 54 BRCA TCGA-B6-A0I8 NXF5 SNP Splice_Site 23 101092628 T C 53 74 BRCA TCGA-B6-A0I8 RAB40A SNP Missense_Mutation 23 102755666 G T 43 69 BRCA TCGA-B6-A0I8 TRPC5 SNP Missense_Mutation 23 111155910 C A 23 81 BRCA TCGA-B6-A0I8 LHFPL1 SNP Missense_Mutation 23 111874827 T C 57 67 BRCA TCGA-B6-A0I8 ZCCHC12 DEL Frame_Shift_Del 23 117959219 CATTGCAC - 29 55 BRCA TCGA-B6-A0I8 RENBP SNP Silent 23 153209420 T C 49 35 BRCA TCGA-B6-A0I8 F8 SNP Silent 23 154091404 G A 46 53 BRCA TCGA-B6-A0I8 ASMTL SNP Silent 23 1554633 G A 33 53 BRCA TCGA-B6-A0I8 YY2 SNP Silent 23 21875634 C G 24 41 BRCA TCGA-B6-A0I8 RPGR SNP Missense_Mutation 23 38144855 C A 23 54 BRCA TCGA-B6-A0I8 CDK16 SNP Missense_Mutation 23 47083105 G A 40 54 BRCA TCGA-B6-A0I8 LAS1L SNP Silent 23 64732757 G A 37 47 BRCA TCGA-B6-A0I8 PLCH1 SNP Missense_Mutation 3 155212270 C G 32 87 BRCA TCGA-B6-A0I8 MUC4 SNP Missense_Mutation 3 195507242 C A 28 39 BRCA TCGA-B6-A0I8 DUSP7 SNP Silent 3 52088044 G A 38 32 BRCA TCGA-B6-A0I8 DNAH12 SNP Missense_Mutation 3 57343879 G C 36 100 BRCA TCGA-B6-A0I8 PTPRG SNP Missense_Mutation 3 62259418 G A 47 73 BRCA TCGA-B6-A0I8 UGT8 DEL Frame_Shift_Del 4 115586909 C - 28 71 BRCA TCGA-B6-A0I8 UGT8 DEL Splice_site 4 115586911 TGGTAA - 63 39 BRCA TCGA-B6-A0I8 HPSE SNP Missense_Mutation 4 84227420 A T 8 87 BRCA TCGA-B6-A0I8 IL17B SNP Missense_Mutation 5 148756510 G A 38 52 BRCA TCGA-B6-A0I8 GRIA1 SNP Silent 5 153030053 C A 26 51 BRCA TCGA-B6-A0I8 COL23A1 DEL Frame_Shift_Del 5 177697319 TTGCCCTGTCATCACTTACGGGC - 52 45 BRCA TCGA-B6-A0I8 IRX2 SNP Missense_Mutation 5 2748681 G T 43 84 BRCA TCGA-B6-A0I8 HIVEP2 SNP Silent 6 143074259 C T 32 61 BRCA TCGA-B6-A0I8 SLC17A3 SNP Missense_Mutation 6 25850741 C A 21 47 BRCA TCGA-B6-A0I8 MDC1 SNP Missense_Mutation 6 30675432 T G 58 45 BRCA TCGA-B6-A0I8 ABCC10 SNP Missense_Mutation 6 43417235 C T 19 61 BRCA TCGA-B6-A0I8 PKHD1 SNP Missense_Mutation 6 51824744 G T 48 72 BRCA TCGA-B6-A0I8 CPED1 SNP Missense_Mutation 7 120737791 C A 29 58 BRCA TCGA-B6-A0I8 FLNC SNP Missense_Mutation 7 128482326 C A 19 32 BRCA TCGA-B6-A0I8 MLL3 SNP Missense_Mutation 7 151917808 G C 36 94 BRCA TCGA-B6-A0I8 HIP1 SNP Missense_Mutation 7 75174474 G C 43 71 BRCA TCGA-B6-A0I8 SGCE SNP Missense_Mutation 7 94232698 C G 32 52 BRCA TCGA-B6-A0I8 PPP1R9A SNP Silent 7 94898626 G A 39 34 BRCA TCGA-B6-A0I8 TEX15 DEL Frame_Shift_Del 8 30701687 TTAGC - 52 70 BRCA TCGA-B6-A0I8 ARFGEF1 SNP Silent 8 68189547 A G 16 65 BRCA TCGA-B6-A0I8 SLC31A1 SNP Missense_Mutation 9 116021131 C G 17 63 BRCA TCGA-B6-A0I8 ASTN2 SNP Missense_Mutation 9 119903677 C T 31 80 BRCA TCGA-B6-A0I8 CDK5RAP2 SNP Silent 9 123201946 T C 56 53 BRCA TCGA-B6-A0I8 ZNF658 SNP Missense_Mutation 9 40774719 C G 32 66 BRCA TCGA-B6-A0I9 IVNS1ABP DEL Frame_Shift_Del 1 185269464 AT - 8 60 BRCA TCGA-B6-A0I9 GJA9 SNP Missense_Mutation 1 39340570 T C 51 44 BRCA TCGA-B6-A0I9 PARS2 SNP Missense_Mutation 1 55224704 C T 19 61 BRCA TCGA-B6-A0I9 KANK4 SNP Missense_Mutation 1 62734091 T C 58 54 BRCA TCGA-B6-A0I9 ABCA4 SNP Missense_Mutation 1 94505646 G A 40 53 BRCA TCGA-B6-A0I9 KCNK18 SNP Missense_Mutation 10 118969429 G T 47 39 BRCA TCGA-B6-A0I9 FAM171A1 DEL Frame_Shift_Del 10 15325912 G - 47 96 BRCA TCGA-B6-A0I9 C10orf128 SNP Missense_Mutation 10 50369647 T G 64 55 BRCA TCGA-B6-A0I9 MYPN SNP Missense_Mutation 10 69948709 G C 36 59 BRCA TCGA-B6-A0I9 IGSF9B SNP Nonsense_Mutation 11 133801654 G A 37 95 BRCA TCGA-B6-A0I9 ENSG00000205046 SNP Silent 11 51459467 G A 45 53 BRCA TCGA-B6-A0I9 OR5D14 SNP Missense_Mutation 11 55563102 A T 3 69 BRCA TCGA-B6-A0I9 OR2D3 SNP Missense_Mutation 11 6943082 A G 1 62 BRCA TCGA-B6-A0I9 MRE11A SNP Silent 11 94194141 T C 53 49 BRCA TCGA-B6-A0I9 RNF10 SNP Missense_Mutation 12 121002888 G A 40 88 BRCA TCGA-B6-A0I9 ITPR2 SNP Missense_Mutation 12 26752146 A T 2 89 BRCA TCGA-B6-A0I9 PHC1B SNP Missense_Mutation 12 55805942 C T 27 58 BRCA TCGA-B6-A0I9 CHD4 SNP Silent 12 6696712 T C 56 53 BRCA TCGA-B6-A0I9 TMTC4 SNP Missense_Mutation 13 101288959 C A 29 73 BRCA TCGA-B6-A0I9 ATP7B SNP Missense_Mutation 13 52508972 G A 37 58 BRCA TCGA-B6-A0I9 RBM26 SNP Silent 13 79911273 C T 23 46 BRCA TCGA-B6-A0I9 MLH3 SNP Missense_Mutation 14 75498872 C G 32 63 BRCA TCGA-B6-A0I9 ATP10A SNP Missense_Mutation 15 25925334 G T 42 54 BRCA TCGA-B6-A0I9 FAN1 SNP Silent 15 31202935 C T 19 47 BRCA TCGA-B6-A0I9 ADAMTSL3 SNP Silent 15 84651068 G A 38 47 BRCA TCGA-B6-A0I9 SRCAP SNP Missense_Mutation 16 30750833 C G 17 82 BRCA TCGA-B6-A0I9 IL34 SNP Missense_Mutation 16 70690933 C T 31 49 BRCA TCGA-B6-A0I9 HYDIN SNP Missense_Mutation 16 71103181 C A 25 50 BRCA TCGA-B6-A0I9 TBC1D28 SNP Missense_Mutation 17 18544650 C T 30 61 BRCA TCGA-B6-A0I9 PELP1 SNP Missense_Mutation 17 4576579 G A 42 70 BRCA TCGA-B6-A0I9 OTOP2 SNP Missense_Mutation 17 72929557 A T 8 61 BRCA TCGA-B6-A0I9 TP53 SNP Missense_Mutation 17 7578526 C T 25 97 BRCA TCGA-B6-A0I9 DLGAP1 SNP Missense_Mutation 18 3567558 C A 29 80 BRCA TCGA-B6-A0I9 SERPINB3 SNP Missense_Mutation 18 61322965 G C 45 91 BRCA TCGA-B6-A0I9 CTDP1 SNP Missense_Mutation 18 77475211 C T 19 53 BRCA TCGA-B6-A0I9 DNASE2 DEL Frame_Shift_Del 19 12989580 C - 26 58 BRCA TCGA-B6-A0I9 AURKC SNP Splice_Site 19 57743593 G C 36 86 BRCA TCGA-B6-A0I9 OR1M1 SNP Nonsense_Mutation 19 9204487 C A 25 53 BRCA TCGA-B6-A0I9 TMEM182 SNP Splice_Site 2 103414461 T C 57 86 BRCA TCGA-B6-A0I9 SP3 SNP Missense_Mutation 2 174820722 A C 16 91 BRCA TCGA-B6-A0I9 TTN SNP Missense_Mutation 2 179641907 T A 51 93 BRCA TCGA-B6-A0I9 STAT4 SNP Silent 2 191896229 T A 55 53 BRCA TCGA-B6-A0I9 CST7 SNP Silent 20 24930099 C T 19 49 BRCA TCGA-B6-A0I9 FBXO7 SNP Silent 22 32881084 G A 39 21 BRCA TCGA-B6-A0I9 CT47B1 SNP Missense_Mutation 23 120009253 G A 40 45 BRCA TCGA-B6-A0I9 STAG2 SNP Missense_Mutation 23 123195113 G A 41 98 BRCA TCGA-B6-A0I9 NSDHL SNP Nonsense_Mutation 23 152036194 C T 23 50 BRCA TCGA-B6-A0I9 MECP2 SNP Silent 23 153296841 G A 38 52 BRCA TCGA-B6-A0I9 PRICKLE3 SNP Missense_Mutation 23 49032341 C T 19 50 BRCA TCGA-B6-A0I9 TRO SNP Missense_Mutation 23 54955699 G A 47 54 BRCA TCGA-B6-A0I9 DNAJC13 SNP Silent 3 132245098 G A 33 63 BRCA TCGA-B6-A0I9 UGT8 SNP Silent 4 115544067 C T 24 91 BRCA TCGA-B6-A0I9 EVC2 SNP Missense_Mutation 4 5624559 G A 33 63 BRCA TCGA-B6-A0I9 ADAMTS12 SNP Missense_Mutation 5 33642057 A T 6 93 BRCA TCGA-B6-A0I9 PRDM1 SNP Missense_Mutation 6 106547224 A G 11 65 BRCA TCGA-B6-A0I9 UTRN SNP Missense_Mutation 6 144832252 C G 18 97 BRCA TCGA-B6-A0I9 PARK2 SNP Missense_Mutation 6 161781222 C T 29 58 BRCA TCGA-B6-A0I9 UNC93A SNP Missense_Mutation 6 167709557 G A 39 81 BRCA TCGA-B6-A0I9 NPY SNP Splice_site 7 24331283 C T 28 64 BRCA TCGA-B6-A0I9 CHN2 SNP Missense_Mutation 7 29407574 C T 31 57 BRCA TCGA-B6-A0I9 ABCA13 SNP Missense_Mutation 7 48390275 G A 38 55 BRCA TCGA-B6-A0I9 STAG3L3 SNP Silent 7 72470053 G T 45 47 BRCA TCGA-B6-A0I9 KCNQ3 SNP Missense_Mutation 8 133187705 C G 22 100 BRCA TCGA-B6-A0I9 LYN SNP Missense_Mutation 8 56922638 C A 26 89 BRCA TCGA-B6-A0I9 VCPIP1 SNP Silent 8 67547342 G A 40 53 BRCA TCGA-B6-A0I9 FAM82B SNP Nonsense_Mutation 8 87498796 C A 30 65 BRCA TCGA-B6-A0I9 CDK5RAP2 SNP Missense_Mutation 9 123232463 A C 13 73 BRCA TCGA-B6-A0I9 MPDZ DEL Frame_Shift_Del 9 13206024 CA - 25 52 BRCA TCGA-B6-A0I9 CAMSAP1 SNP Missense_Mutation 9 138714775 C T 24 61 BRCA TCGA-B6-A0IA GPSM2 SNP Missense_Mutation 1 109444429 C T 26 100 BRCA TCGA-B6-A0IA NBPF12 SNP Missense_Mutation 1 146403703 T G 53 50 BRCA TCGA-B6-A0IA ATP1B1 SNP Silent 1 169076073 C G 22 50 BRCA TCGA-B6-A0IA MMEL1 INS Frame_Shift_Ins 1 2524333 - C 55 75 BRCA TCGA-B6-A0IA LDHC SNP Missense_Mutation 11 18456442 G A 33 98 BRCA TCGA-B6-A0IA WSCD2 SNP Missense_Mutation 12 108603963 C T 19 80 BRCA TCGA-B6-A0IA CACNA1C SNP Silent 12 2676748 G A 35 61 BRCA TCGA-B6-A0IA ZWILCH SNP Missense_Mutation 15 66821838 T A 52 57 BRCA TCGA-B6-A0IA TTN DEL Frame_Shift_Del 2 179397545 T - 50 53 BRCA TCGA-B6-A0IA AFTPH SNP Missense_Mutation 2 64779110 T G 60 54 BRCA TCGA-B6-A0IA C20orf79 SNP Missense_Mutation 20 18794881 T C 55 64 BRCA TCGA-B6-A0IA PRR23C SNP Silent 3 138762902 G A 42 47 BRCA TCGA-B6-A0IA NEIL3 SNP Silent 4 178274553 C T 29 44 BRCA TCGA-B6-A0IA TIGD2 SNP Missense_Mutation 4 90034880 A G 5 76 BRCA TCGA-B6-A0IA PCDHB3 SNP Silent 5 140481610 C T 31 43 BRCA TCGA-B6-A0IA PCDHB12 SNP Missense_Mutation 5 140590839 C T 22 42 BRCA TCGA-B6-A0IA GRM6 SNP Silent 5 178413950 G A 40 38 BRCA TCGA-B6-A0IA SIM1 SNP Missense_Mutation 6 100895183 G A 41 89 BRCA TCGA-B6-A0IA BTN2A3 SNP Missense_Mutation 6 26426628 G A 38 44 BRCA TCGA-B6-A0IA LRP12 SNP Missense_Mutation 8 105509765 C T 25 77 BRCA TCGA-B6-A0IA CDCA2 SNP Silent 8 25360909 G A 33 57 BRCA TCGA-B6-A0IA CNGB3 SNP Silent 8 87623885 C T 32 78 BRCA TCGA-B6-A0IA FAM219A SNP Missense_Mutation 9 34401098 A G 12 76 BRCA TCGA-B6-A0IB ATP1A1 SNP Missense_Mutation 1 116936238 G A 46 98 BRCA TCGA-B6-A0IB ENSA SNP Missense_Mutation 1 150600017 G C 34 73 BRCA TCGA-B6-A0IB NFASC SNP Missense_Mutation 1 204938069 A G 3 66 BRCA TCGA-B6-A0IB PROX1 SNP Missense_Mutation 1 214170689 G T 33 87 BRCA TCGA-B6-A0IB CDC42BPA SNP Missense_Mutation 1 227182616 G A 38 72 BRCA TCGA-B6-A0IB ZNF238 SNP Missense_Mutation 1 244218061 G T 41 100 BRCA TCGA-B6-A0IB PTEN SNP Splice_Site 10 89711873 A G 7 90 BRCA TCGA-B6-A0IB SLCO1A2 SNP Missense_Mutation 12 21445147 T C 55 57 BRCA TCGA-B6-A0IB TMTC3 SNP Missense_Mutation 12 88589349 A G 8 76 BRCA TCGA-B6-A0IB GRK1 SNP Missense_Mutation 13 114321757 G A 37 95 BRCA TCGA-B6-A0IB ENSG00000211794 SNP Silent 14 22434289 C T 27 49 BRCA TCGA-B6-A0IB ZFP36L1 DEL Frame_Shift_Del 14 69257027 GCTCAGAGCGGGG - 34 57 BRCA TCGA-B6-A0IB C14orf43 DEL Frame_Shift_Del 14 74205696 T - 55 60 BRCA TCGA-B6-A0IB ZC2HC1C SNP Missense_Mutation 14 75537877 G A 42 49 BRCA TCGA-B6-A0IB SPTBN5 DEL Frame_Shift_Del 15 42144894 G - 47 48 BRCA TCGA-B6-A0IB RSL1D1 SNP Missense_Mutation 16 11940376 G A 33 73 BRCA TCGA-B6-A0IB CETP SNP Splice_site 16 57009014 C T 25 48 BRCA TCGA-B6-A0IB FAM96B SNP Missense_Mutation 16 66967614 A C 6 74 BRCA TCGA-B6-A0IB ANKRD11 SNP Nonsense_Mutation 16 89347633 C A 30 92 BRCA TCGA-B6-A0IB MAP2K4 INS Splice_Site 17 11958309 - T 48 92 BRCA TCGA-B6-A0IB NF1 SNP Missense_Mutation 17 29657384 G C 33 99 BRCA TCGA-B6-A0IB NLRP1 SNP Nonsense_Mutation 17 5418124 C A 30 64 BRCA TCGA-B6-A0IB SLC9A3R1 SNP Missense_Mutation 17 72764791 T C 54 87 BRCA TCGA-B6-A0IB ZCCHC2 SNP Silent 18 60242257 G A 38 32 BRCA TCGA-B6-A0IB HNRNPUL1 SNP Missense_Mutation 19 41811615 G C 44 62 BRCA TCGA-B6-A0IB PHLDB3 SNP Missense_Mutation 19 44006351 G A 38 64 BRCA TCGA-B6-A0IB PNMAL2 SNP Missense_Mutation 19 46997335 A C 6 49 BRCA TCGA-B6-A0IB ENSG00000171101 SNP Missense_Mutation 19 51671571 C T 19 31 BRCA TCGA-B6-A0IB CEACAM18 SNP Silent 19 51984819 C G 29 56 BRCA TCGA-B6-A0IB DPP4 SNP Missense_Mutation 2 162875265 G A 38 82 BRCA TCGA-B6-A0IB HIBCH SNP Missense_Mutation 2 191069855 A C 4 59 BRCA TCGA-B6-A0IB PCYOX1 SNP Silent 2 70503936 C T 31 42 BRCA TCGA-B6-A0IB POLR3F DEL Frame_Shift_Del 20 18462391 C - 17 52 BRCA TCGA-B6-A0IB COL20A1 INS Frame_Shift_Ins 20 61959802 - T 24 41 BRCA TCGA-B6-A0IB GAB4 SNP Missense_Mutation 22 17451008 C A 28 57 BRCA TCGA-B6-A0IB CACNG2 SNP Missense_Mutation 22 36983554 C T 32 90 BRCA TCGA-B6-A0IB GPRASP2 SNP Missense_Mutation 23 101971946 G T 46 54 BRCA TCGA-B6-A0IB RGAG1 SNP Missense_Mutation 23 109694759 G T 41 50 BRCA TCGA-B6-A0IB G6PD SNP Missense_Mutation 23 153761880 C T 19 91 BRCA TCGA-B6-A0IB TIPARP SNP Missense_Mutation 3 156395929 G T 36 52 BRCA TCGA-B6-A0IB GP5 SNP Silent 3 194117824 G A 48 65 BRCA TCGA-B6-A0IB UBA7 SNP Missense_Mutation 3 49847490 G A 45 55 BRCA TCGA-B6-A0IB ENSG00000187900 SNP Missense_Mutation 3 97957599 T C 52 60 BRCA TCGA-B6-A0IB H2AFZ SNP Missense_Mutation 4 100870877 C G 24 63 BRCA TCGA-B6-A0IB FGG SNP Missense_Mutation 4 155533328 C T 26 96 BRCA TCGA-B6-A0IB LRP2BP SNP Silent 4 186296782 C T 30 52 BRCA TCGA-B6-A0IB MXD4 SNP Missense_Mutation 4 2252287 C T 27 54 BRCA TCGA-B6-A0IB NIPAL4 SNP Silent 5 156899539 G A 38 35 BRCA TCGA-B6-A0IB RAB3C SNP Missense_Mutation 5 57913553 C G 31 47 BRCA TCGA-B6-A0IB ANKRD32 SNP Missense_Mutation 5 94014648 C G 32 53 BRCA TCGA-B6-A0IB DNAH8 SNP Missense_Mutation 6 38863942 G A 33 99 BRCA TCGA-B6-A0IB PTK7 SNP Missense_Mutation 6 43107257 C T 19 71 BRCA TCGA-B6-A0IB LMBRD1 SNP Missense_Mutation 6 70428924 C T 28 58 BRCA TCGA-B6-A0IB AEBP1 SNP Missense_Mutation 7 44150707 T G 59 50 BRCA TCGA-B6-A0IB ABCB1 SNP Silent 7 87175263 G A 37 55 BRCA TCGA-B6-A0IC MFN2 SNP Missense_Mutation 1 12062055 C A 32 96 BRCA TCGA-B6-A0IC PRPF3 SNP Missense_Mutation 1 150307447 T C 50 94 BRCA TCGA-B6-A0IC FCRL1 SNP Missense_Mutation 1 157767580 C T 26 50 BRCA TCGA-B6-A0IC CEP350 DEL Frame_Shift_Del 1 180047729 G - 35 63 BRCA TCGA-B6-A0IC LMOD1 SNP Silent 1 201869751 T C 61 49 BRCA TCGA-B6-A0IC ZFYVE9 DEL Frame_Shift_Del 1 52704506 TATC - 61 52 BRCA TCGA-B6-A0IC PCDH15 SNP Missense_Mutation 10 55912885 C A 30 96 BRCA TCGA-B6-A0IC PTPN5 SNP Splice_site 11 18764870 G A 40 35 BRCA TCGA-B6-A0IC SLC5A12 SNP Silent 11 26725447 G A 45 50 BRCA TCGA-B6-A0IC WSCD2 SNP Missense_Mutation 12 108642028 C A 25 67 BRCA TCGA-B6-A0IC DUSP16 INS Frame_Shift_Ins 12 12630859 - G 7 43 BRCA TCGA-B6-A0IC KRT1 SNP Missense_Mutation 12 53070227 G A 42 84 BRCA TCGA-B6-A0IC A2M INS Silent 12 9220358 - T 40 39 BRCA TCGA-B6-A0IC KL SNP Missense_Mutation 13 33629465 A T 10 45 BRCA TCGA-B6-A0IC OLFM4 SNP Missense_Mutation 13 53624378 C A 17 35 BRCA TCGA-B6-A0IC DNAH3 SNP Silent 16 21115812 T C 55 49 BRCA TCGA-B6-A0IC SMCR8 SNP Missense_Mutation 17 18220579 C A 26 66 BRCA TCGA-B6-A0IC SLC13A2 SNP Silent 17 26817851 C T 19 21 BRCA TCGA-B6-A0IC ANO8 DEL Frame_Shift_Del 19 17436073 CT - 24 50 BRCA TCGA-B6-A0IC ARHGAP35 SNP Missense_Mutation 19 47492897 C T 23 95 BRCA TCGA-B6-A0IC TTL SNP Missense_Mutation 2 113277954 A G 11 64 BRCA TCGA-B6-A0IC SATB2 SNP Missense_Mutation 2 200137254 T A 50 92 BRCA TCGA-B6-A0IC DSCAM SNP Missense_Mutation 21 41427655 T C 51 67 BRCA TCGA-B6-A0IC ZNF74 SNP Missense_Mutation 22 20759967 C G 27 44 BRCA TCGA-B6-A0IC FRMPD4 SNP Missense_Mutation 23 12734333 C A 25 54 BRCA TCGA-B6-A0IC NAA10 SNP Missense_Mutation 23 153197829 G T 42 95 BRCA TCGA-B6-A0IC FAM48B1 SNP Missense_Mutation 23 24381566 T A 51 66 BRCA TCGA-B6-A0IC STARD8 SNP Missense_Mutation 23 67937329 G T 35 48 BRCA TCGA-B6-A0IC TIMMDC1 SNP Missense_Mutation 3 119236093 C G 32 29 BRCA TCGA-B6-A0IC PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-B6-A0IC RNF123 SNP Silent 3 49750025 C A 21 57 BRCA TCGA-B6-A0IC ZNF354C SNP Silent 5 178503490 C T 19 35 BRCA TCGA-B6-A0IC BDP1 SNP Missense_Mutation 5 70793174 C T 28 76 BRCA TCGA-B6-A0IC MAP3K4 SNP Missense_Mutation 6 161470644 C T 17 53 BRCA TCGA-B6-A0IC ACCN3 SNP Silent 7 150749810 G A 40 44 BRCA TCGA-B6-A0IC SDK1 SNP Splice_site 7 4011199 C T 23 61 BRCA TCGA-B6-A0IC CROT SNP Missense_Mutation 7 86988539 C G 29 55 BRCA TCGA-B6-A0IC ALDH1A1 SNP Silent 9 75540496 C T 32 60 BRCA TCGA-B6-A0IC ZCCHC6 DEL Frame_Shift_Del 9 88961237 CTCTC - 32 94 BRCA TCGA-B6-A0IE PRAMEF13 SNP Missense_Mutation 1 13448451 C G 28 51 BRCA TCGA-B6-A0IE ROR1 SNP Missense_Mutation 1 64643348 G A 40 87 BRCA TCGA-B6-A0IE PRICKLE1 SNP Silent 12 42853698 A T 7 45 BRCA TCGA-B6-A0IE VPS39 SNP Silent 15 42458983 C T 26 56 BRCA TCGA-B6-A0IE TBC1D2B SNP Missense_Mutation 15 78316850 C T 23 96 BRCA TCGA-B6-A0IE NLK SNP Missense_Mutation 17 26495615 G A 48 98 BRCA TCGA-B6-A0IE TP53 SNP Splice_Site 17 7577018 C T 18 63 BRCA TCGA-B6-A0IE GUCY2D SNP Missense_Mutation 17 7910008 G A 37 65 BRCA TCGA-B6-A0IE MYO5B SNP Missense_Mutation 18 47352891 A C 11 71 BRCA TCGA-B6-A0IE RTTN SNP Splice_site 18 67863738 G A 40 59 BRCA TCGA-B6-A0IE ZNF439 SNP Nonsense_Mutation 19 11979022 A T 9 74 BRCA TCGA-B6-A0IE IL1RN SNP Missense_Mutation 2 113888708 G T 47 75 BRCA TCGA-B6-A0IE GPR1 SNP Missense_Mutation 2 207041836 A C 5 55 BRCA TCGA-B6-A0IE COL9A3 SNP Missense_Mutation 20 61460288 G C 38 68 BRCA TCGA-B6-A0IE APOL5 SNP Missense_Mutation 22 36116635 G A 33 45 BRCA TCGA-B6-A0IE HPS3 SNP Nonsense_Mutation 3 148880648 C T 27 50 BRCA TCGA-B6-A0IE PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-B6-A0IE MUC4 SNP Missense_Mutation 3 195497194 C T 31 64 BRCA TCGA-B6-A0IE MUC4 SNP Missense_Mutation 3 195510725 G A 43 52 BRCA TCGA-B6-A0IE LTF SNP Silent 3 46492156 C T 17 64 BRCA TCGA-B6-A0IE ADAMTS12 SNP Missense_Mutation 5 33576497 G A 44 54 BRCA TCGA-B6-A0IE KIF2A SNP Missense_Mutation 5 61668293 G C 33 99 BRCA TCGA-B6-A0IE VCAN DEL Frame_Shift_Del 5 82818011 G - 48 59 BRCA TCGA-B6-A0IE ZNF3 SNP Missense_Mutation 7 99673193 G C 38 66 BRCA TCGA-B6-A0IE ABRA SNP Missense_Mutation 8 107782189 C A 20 50 BRCA TCGA-B6-A0IE DBC1 SNP Missense_Mutation 9 121930047 C T 27 98 BRCA TCGA-B6-A0IE ADAMTSL1 SNP Missense_Mutation 9 18776871 G A 40 62 BRCA TCGA-B6-A0IG FLG SNP Missense_Mutation 1 152285981 G A 40 44 BRCA TCGA-B6-A0IG GPR52 SNP Silent 1 174417411 C A 29 60 BRCA TCGA-B6-A0IG SLC35F3 SNP Silent 1 234452419 C T 23 18 BRCA TCGA-B6-A0IG OR2T3 SNP Missense_Mutation 1 248636826 C T 23 57 BRCA TCGA-B6-A0IG PTGER3 SNP Missense_Mutation 1 71512366 G C 35 58 BRCA TCGA-B6-A0IG NSMCE4A DEL Frame_Shift_Del 10 123719061 TT - 56 53 BRCA TCGA-B6-A0IG MRC1 SNP Splice_site 10 18155491 G A 43 86 BRCA TCGA-B6-A0IG MYO3A SNP Silent 10 26243889 C T 20 64 BRCA TCGA-B6-A0IG ATG2A SNP Missense_Mutation 11 64669591 C T 20 69 BRCA TCGA-B6-A0IG ODZ4 SNP Missense_Mutation 11 78433879 G A 39 62 BRCA TCGA-B6-A0IG LRRC43 SNP Missense_Mutation 12 122669187 G A 38 54 BRCA TCGA-B6-A0IG PDS5B SNP Missense_Mutation 13 33344430 G C 45 89 BRCA TCGA-B6-A0IG RB1 SNP Missense_Mutation 13 49050933 A G 9 88 BRCA TCGA-B6-A0IG TM9SF1 SNP Missense_Mutation 14 24664018 C T 29 79 BRCA TCGA-B6-A0IG DAAM1 SNP Missense_Mutation 14 59792440 T A 52 92 BRCA TCGA-B6-A0IG EEF2K SNP Silent 16 22268146 C T 31 50 BRCA TCGA-B6-A0IG C16orf78 SNP Missense_Mutation 16 49433130 G A 44 43 BRCA TCGA-B6-A0IG BBS2 SNP Missense_Mutation 16 56536710 C T 31 100 BRCA TCGA-B6-A0IG SPACA3 SNP Missense_Mutation 17 31318972 C T 27 51 BRCA TCGA-B6-A0IG ASXL3 SNP Missense_Mutation 18 31325701 C A 29 60 BRCA TCGA-B6-A0IG SYT4 SNP Missense_Mutation 18 40853841 C T 29 100 BRCA TCGA-B6-A0IG PRX DEL In_Frame_Del 19 40902613 GGCAGCTGTACCTCT - 39 55 BRCA TCGA-B6-A0IG C2orf29 SNP Missense_Mutation 2 101879132 G A 39 100 BRCA TCGA-B6-A0IG MARCO SNP Missense_Mutation 2 119752091 G A 40 33 BRCA TCGA-B6-A0IG PHF20 DEL Frame_Shift_Del 20 34459596 CTGGCCAGGT - 28 77 BRCA TCGA-B6-A0IG BLCAP SNP Missense_Mutation 20 36147543 G C 35 73 BRCA TCGA-B6-A0IG BCL2L13 SNP Missense_Mutation 22 18209657 G T 42 99 BRCA TCGA-B6-A0IG ATP2B3 SNP Missense_Mutation 23 152807210 G A 40 97 BRCA TCGA-B6-A0IG MED12 SNP Missense_Mutation 23 70344907 C T 22 59 BRCA TCGA-B6-A0IG PGK1 SNP Missense_Mutation 23 77378339 G T 36 83 BRCA TCGA-B6-A0IG ADAMTS9 SNP Missense_Mutation 3 64589940 G T 46 52 BRCA TCGA-B6-A0IG ANK2 SNP Silent 4 114199618 C T 19 50 BRCA TCGA-B6-A0IG NPFFR2 SNP Missense_Mutation 4 72897694 G C 41 51 BRCA TCGA-B6-A0IG RELN SNP Missense_Mutation 7 103276003 G T 46 64 BRCA TCGA-B6-A0IG NPTX2 SNP Missense_Mutation 7 98254285 G A 38 99 BRCA TCGA-B6-A0IG C9orf153 SNP Splice_Site 9 88842313 T A 55 46 BRCA TCGA-B6-A0IH CLCA1 SNP Missense_Mutation 1 86961326 G A 41 72 BRCA TCGA-B6-A0IH DUSP13 SNP Missense_Mutation 10 76863684 G A 44 54 BRCA TCGA-B6-A0IH C10orf12 SNP Missense_Mutation 10 98742433 A T 7 50 BRCA TCGA-B6-A0IH DCHS1 SNP Missense_Mutation 11 6645151 C T 19 97 BRCA TCGA-B6-A0IH DDX54 SNP Silent 12 113599787 C T 28 78 BRCA TCGA-B6-A0IH PFKM SNP Missense_Mutation 12 48535119 T C 60 91 BRCA TCGA-B6-A0IH HERC2 SNP Silent 15 28357017 G A 37 55 BRCA TCGA-B6-A0IH KIAA1024 SNP Missense_Mutation 15 79760670 G A 46 100 BRCA TCGA-B6-A0IH XPO6 SNP Missense_Mutation 16 28157469 T C 49 73 BRCA TCGA-B6-A0IH CDH1 DEL In_Frame_Del 16 68845601 GAGGTCACAGCCACA - 41 49 BRCA TCGA-B6-A0IH KRT9 SNP Missense_Mutation 17 39726220 T C 52 59 BRCA TCGA-B6-A0IH TANC2 SNP Missense_Mutation 17 61498693 C T 30 97 BRCA TCGA-B6-A0IH SDK2 SNP Missense_Mutation 17 71364597 C T 27 100 BRCA TCGA-B6-A0IH ZNF585A SNP Silent 19 37643448 C T 27 49 BRCA TCGA-B6-A0IH LCT SNP Missense_Mutation 2 136579662 T A 52 60 BRCA TCGA-B6-A0IH RUNX1 SNP Nonsense_Mutation 21 36206716 G A 45 84 BRCA TCGA-B6-A0IH MAGEC3 SNP Silent 23 140983081 G A 39 45 BRCA TCGA-B6-A0IH MTM1 SNP Missense_Mutation 23 149814175 C T 21 69 BRCA TCGA-B6-A0IH SLC22A14 SNP Missense_Mutation 3 38347837 G A 42 45 BRCA TCGA-B6-A0IH GRB10 SNP Nonsense_Mutation 7 50663154 T A 61 93 BRCA TCGA-B6-A0IH GTF2IRD2 SNP Missense_Mutation 7 74211389 T G 60 60 BRCA TCGA-B6-A0IH CYLC2 SNP Missense_Mutation 9 105767619 G T 34 50 BRCA TCGA-B6-A0IH OR1Q1 SNP Missense_Mutation 9 125377831 G A 38 71 BRCA TCGA-B6-A0IH ZDHHC21 SNP Missense_Mutation 9 14658806 C T 27 63 BRCA TCGA-B6-A0IH RFX3 DEL Frame_Shift_Del 9 3346744 CA - 25 51 BRCA TCGA-B6-A0IH RMI1 SNP Missense_Mutation 9 86617271 A G 5 76 BRCA TCGA-B6-A0IJ ADAM30 SNP Missense_Mutation 1 120438596 A C 11 58 BRCA TCGA-B6-A0IJ APOBEC4 SNP Silent 1 183616996 G T 42 51 BRCA TCGA-B6-A0IJ PPP1R15B SNP Missense_Mutation 1 204379199 A T 4 50 BRCA TCGA-B6-A0IJ C1orf186 SNP Missense_Mutation 1 206243207 G C 35 48 BRCA TCGA-B6-A0IJ PLXNA2 SNP Missense_Mutation 1 208390491 C G 28 55 BRCA TCGA-B6-A0IJ TAF5L SNP Missense_Mutation 1 229738621 G C 35 98 BRCA TCGA-B6-A0IJ OR14I1 SNP Missense_Mutation 1 248844691 C A 32 45 BRCA TCGA-B6-A0IJ EYA3 SNP Missense_Mutation 1 28339784 G C 33 77 BRCA TCGA-B6-A0IJ PRKAA2 SNP Splice_site 1 57159438 G T 41 98 BRCA TCGA-B6-A0IJ HFM1 SNP Splice_site 1 91788756 C A 18 58 BRCA TCGA-B6-A0IJ HIF1AN SNP Silent 10 102296311 G A 33 61 BRCA TCGA-B6-A0IJ NRAP SNP Silent 10 115348779 G T 47 57 BRCA TCGA-B6-A0IJ OTUD1 SNP Missense_Mutation 10 23729805 G T 48 86 BRCA TCGA-B6-A0IJ EPC1 SNP Splice_Site 10 32576025 C A 18 100 BRCA TCGA-B6-A0IJ FAM21A SNP Missense_Mutation 10 51887518 T G 56 52 BRCA TCGA-B6-A0IJ ENSG00000186082 SNP Missense_Mutation 11 35882161 C A 29 60 BRCA TCGA-B6-A0IJ OR4X2 SNP Missense_Mutation 11 48266965 A T 12 58 BRCA TCGA-B6-A0IJ OR52A5 SNP Missense_Mutation 11 5153296 C T 29 59 BRCA TCGA-B6-A0IJ FADS2 SNP Silent 11 61615738 C G 27 45 BRCA TCGA-B6-A0IJ SLC22A25 SNP Missense_Mutation 11 62951206 C T 24 44 BRCA TCGA-B6-A0IJ DNHD1 SNP Missense_Mutation 11 6566067 C T 27 50 BRCA TCGA-B6-A0IJ CLEC1A SNP Missense_Mutation 12 10233932 C G 32 53 BRCA TCGA-B6-A0IJ PRB3 SNP Nonsense_Mutation 12 11420173 G A 45 59 BRCA TCGA-B6-A0IJ HPD DEL Splice_Site 12 122294467 CCACCCTCCCCGGGCACCTCA - 30 51 BRCA TCGA-B6-A0IJ SLC15A5 SNP Missense_Mutation 12 16397579 T A 60 70 BRCA TCGA-B6-A0IJ PLCZ1 SNP Nonsense_Mutation 12 18837202 T A 56 51 BRCA TCGA-B6-A0IJ ST8SIA1 SNP Missense_Mutation 12 22440177 T A 64 87 BRCA TCGA-B6-A0IJ ENSG00000118976 SNP Missense_Mutation 12 3948949 C G 32 49 BRCA TCGA-B6-A0IJ PCED1B SNP Missense_Mutation 12 47629748 C A 22 56 BRCA TCGA-B6-A0IJ SLC4A8 SNP Missense_Mutation 12 51851241 G T 33 66 BRCA TCGA-B6-A0IJ RPL41 SNP Missense_Mutation 12 56511292 G C 35 92 BRCA TCGA-B6-A0IJ SRGAP1 SNP Missense_Mutation 12 64502729 G C 45 100 BRCA TCGA-B6-A0IJ CHD4 SNP Missense_Mutation 12 6709817 C G 32 95 BRCA TCGA-B6-A0IJ MRPS31 SNP Missense_Mutation 13 41303544 C A 24 55 BRCA TCGA-B6-A0IJ FAM194B SNP Missense_Mutation 13 46115738 C A 32 57 BRCA TCGA-B6-A0IJ SLC15A1 SNP Missense_Mutation 13 99339888 T A 59 90 BRCA TCGA-B6-A0IJ MDP1 SNP Missense_Mutation 14 24683340 T C 51 53 BRCA TCGA-B6-A0IJ WDHD1 SNP Silent 14 55411098 T G 61 54 BRCA TCGA-B6-A0IJ C14orf105 SNP Missense_Mutation 14 57947351 A G 15 57 BRCA TCGA-B6-A0IJ GOLGA5 SNP Missense_Mutation 14 93275676 G C 36 58 BRCA TCGA-B6-A0IJ RAD51 SNP Silent 15 41022086 A G 15 54 BRCA TCGA-B6-A0IJ TGM7 SNP Missense_Mutation 15 43584967 C A 24 52 BRCA TCGA-B6-A0IJ EDC3 SNP Silent 15 74925172 C G 22 56 BRCA TCGA-B6-A0IJ TTLL13 SNP Missense_Mutation 15 90799441 G A 42 94 BRCA TCGA-B6-A0IJ MCTP2 SNP Missense_Mutation 15 94882595 G C 45 59 BRCA TCGA-B6-A0IJ GRIN2A SNP Missense_Mutation 16 10032157 G C 41 54 BRCA TCGA-B6-A0IJ SMG1 SNP Silent 16 18863734 G A 35 76 BRCA TCGA-B6-A0IJ IL4R SNP Missense_Mutation 16 27367189 T A 50 69 BRCA TCGA-B6-A0IJ ZNF646 SNP Missense_Mutation 16 31092572 G C 41 54 BRCA TCGA-B6-A0IJ SLC12A4 SNP Silent 16 67983759 G A 37 48 BRCA TCGA-B6-A0IJ COG4 SNP Missense_Mutation 16 70516652 C T 19 63 BRCA TCGA-B6-A0IJ HYDIN SNP Missense_Mutation 16 70969958 C T 31 89 BRCA TCGA-B6-A0IJ MYH4 SNP Missense_Mutation 17 10355263 C A 28 69 BRCA TCGA-B6-A0IJ DNAH9 SNP Missense_Mutation 17 11687830 C T 24 100 BRCA TCGA-B6-A0IJ SLFN5 SNP Missense_Mutation 17 33592271 G C 41 57 BRCA TCGA-B6-A0IJ TEX34 SNP Missense_Mutation 17 43333760 T C 50 44 BRCA TCGA-B6-A0IJ FAM64A SNP Silent 17 6348481 C G 30 48 BRCA TCGA-B6-A0IJ SDK2 SNP Nonsense_Mutation 17 71375645 G T 48 84 BRCA TCGA-B6-A0IJ TP53 SNP Missense_Mutation 17 7578190 T C 49 88 BRCA TCGA-B6-A0IJ MC2R SNP Missense_Mutation 18 13885460 C G 31 80 BRCA TCGA-B6-A0IJ NDC80 SNP Missense_Mutation 18 2601425 G C 45 88 BRCA TCGA-B6-A0IJ SLC39A6 SNP Missense_Mutation 18 33691090 C G 29 82 BRCA TCGA-B6-A0IJ EPG5 SNP Silent 18 43483981 G C 35 53 BRCA TCGA-B6-A0IJ ILVBL SNP Missense_Mutation 19 15228790 A T 10 87 BRCA TCGA-B6-A0IJ NOTCH3 SNP Missense_Mutation 19 15276281 C G 32 96 BRCA TCGA-B6-A0IJ CYP4F11 SNP Missense_Mutation 19 16038102 G A 37 66 BRCA TCGA-B6-A0IJ ZNF101 SNP Missense_Mutation 19 19790898 A T 9 43 BRCA TCGA-B6-A0IJ ZNF208 SNP Missense_Mutation 19 22155945 G A 45 86 BRCA TCGA-B6-A0IJ ZNF730 SNP Missense_Mutation 19 23329499 G C 35 54 BRCA TCGA-B6-A0IJ TLE6 SNP Missense_Mutation 19 2993572 C G 30 73 BRCA TCGA-B6-A0IJ THAP8 SNP Silent 19 36526357 C T 30 48 BRCA TCGA-B6-A0IJ PLEKHG2 SNP Missense_Mutation 19 39914678 C A 32 49 BRCA TCGA-B6-A0IJ PSG11 SNP Missense_Mutation 19 43529167 C A 20 46 BRCA TCGA-B6-A0IJ KLK1 SNP Silent 19 51323272 G A 41 47 BRCA TCGA-B6-A0IJ ZNF841 SNP Missense_Mutation 19 52568812 G A 39 45 BRCA TCGA-B6-A0IJ NCKAP5 SNP Missense_Mutation 2 133887640 C G 19 76 BRCA TCGA-B6-A0IJ LRP2 SNP Silent 2 170177303 C A 23 19 BRCA TCGA-B6-A0IJ TTN SNP Missense_Mutation 2 179479664 A G 8 93 BRCA TCGA-B6-A0IJ TTN SNP Missense_Mutation 2 179549456 G C 44 66 BRCA TCGA-B6-A0IJ DNAH7 SNP Missense_Mutation 2 196889189 T A 50 66 BRCA TCGA-B6-A0IJ BZW1 SNP Missense_Mutation 2 201682958 G A 46 87 BRCA TCGA-B6-A0IJ KLF7 SNP Missense_Mutation 2 207945962 G C 42 100 BRCA TCGA-B6-A0IJ ABCA12 SNP Missense_Mutation 2 215843072 G T 33 85 BRCA TCGA-B6-A0IJ HJURP SNP Missense_Mutation 2 234750428 C A 22 54 BRCA TCGA-B6-A0IJ BIRC6 SNP Silent 2 32640645 A G 3 65 BRCA TCGA-B6-A0IJ EML4 SNP Missense_Mutation 2 42557309 C A 24 47 BRCA TCGA-B6-A0IJ SIK1 DEL Frame_Shift_Del 21 44839340 A - 9 43 BRCA TCGA-B6-A0IJ SMTN SNP Missense_Mutation 22 31484908 A G 3 54 BRCA TCGA-B6-A0IJ LDOC1L SNP Nonsense_Mutation 22 44893163 G A 37 58 BRCA TCGA-B6-A0IJ FAM127B SNP Missense_Mutation 23 134186077 C T 19 62 BRCA TCGA-B6-A0IJ ZNF75D SNP Missense_Mutation 23 134427720 T G 52 49 BRCA TCGA-B6-A0IJ LOC644717 SNP Silent 23 134812080 A C 11 57 BRCA TCGA-B6-A0IJ MECP2 SNP Missense_Mutation 23 153297782 G A 38 83 BRCA TCGA-B6-A0IJ ZC3H12B SNP Missense_Mutation 23 64722721 G A 40 60 BRCA TCGA-B6-A0IJ MORC1 SNP Missense_Mutation 3 108819288 C G 22 80 BRCA TCGA-B6-A0IJ WDR52 SNP Missense_Mutation 3 113063398 T G 54 74 BRCA TCGA-B6-A0IJ HEG1 SNP Missense_Mutation 3 124732481 C A 17 50 BRCA TCGA-B6-A0IJ SCN10A SNP Missense_Mutation 3 38764954 C G 29 60 BRCA TCGA-B6-A0IJ BANK1 SNP Splice_site 4 102992432 A G 12 59 BRCA TCGA-B6-A0IJ FRAS1 SNP Missense_Mutation 4 79322001 A C 3 46 BRCA TCGA-B6-A0IJ TRPC7 SNP Nonsense_Mutation 5 135692811 C A 31 99 BRCA TCGA-B6-A0IJ PSD2 SNP Silent 5 139193032 C T 27 39 BRCA TCGA-B6-A0IJ MYO10 SNP Nonsense_Mutation 5 16680191 G C 40 50 BRCA TCGA-B6-A0IJ SQSTM1 SNP Missense_Mutation 5 179251050 A G 3 70 BRCA TCGA-B6-A0IJ DROSHA SNP Missense_Mutation 5 31526495 A G 1 84 BRCA TCGA-B6-A0IJ SLC45A2 SNP Missense_Mutation 5 33982475 C T 20 58 BRCA TCGA-B6-A0IJ HSPB3 SNP Missense_Mutation 5 53751624 C T 25 57 BRCA TCGA-B6-A0IJ HIVEP1 SNP Missense_Mutation 6 12122400 C G 32 99 BRCA TCGA-B6-A0IJ UTRN SNP Missense_Mutation 6 145167956 G C 35 81 BRCA TCGA-B6-A0IJ GPLD1 SNP Missense_Mutation 6 24476481 G T 46 48 BRCA TCGA-B6-A0IJ KIAA0319 SNP Missense_Mutation 6 24596446 C G 32 56 BRCA TCGA-B6-A0IJ FILIP1 SNP Missense_Mutation 6 76023420 A G 4 64 BRCA TCGA-B6-A0IJ HTR1E SNP Missense_Mutation 6 87725567 A T 7 76 BRCA TCGA-B6-A0IJ PM20D2 SNP Missense_Mutation 6 89859096 A G 11 89 BRCA TCGA-B6-A0IJ ZCWPW1 SNP Missense_Mutation 7 100013966 G T 41 43 BRCA TCGA-B6-A0IJ ASZ1 SNP Missense_Mutation 7 117066908 G T 47 47 BRCA TCGA-B6-A0IJ MLL3 SNP Missense_Mutation 7 152012412 C T 25 90 BRCA TCGA-B6-A0IJ VSTM2A SNP Missense_Mutation 7 54636842 T C 57 75 BRCA TCGA-B6-A0IJ ABCB1 SNP Missense_Mutation 7 87178828 C G 29 80 BRCA TCGA-B6-A0IJ STEAP4 SNP Silent 7 87913447 A T 1 46 BRCA TCGA-B6-A0IJ LMTK2 SNP Nonsense_Mutation 7 97822389 C G 29 60 BRCA TCGA-B6-A0IJ ATP6V1C1 SNP Silent 8 104063354 T C 64 56 BRCA TCGA-B6-A0IJ ZFPM2 SNP Missense_Mutation 8 106646518 G T 36 76 BRCA TCGA-B6-A0IJ LONRF1 SNP Missense_Mutation 8 12594303 G A 36 56 BRCA TCGA-B6-A0IJ ASAP1 SNP Silent 8 131172126 G A 34 65 BRCA TCGA-B6-A0IJ DGAT1 DEL In_Frame_Del 8 145541085 GAGCCA - 45 55 BRCA TCGA-B6-A0IJ DOCK5 SNP Missense_Mutation 8 25149578 G A 45 87 BRCA TCGA-B6-A0IJ PXDNL SNP Missense_Mutation 8 52384808 C T 19 77 BRCA TCGA-B6-A0IJ PREX2 SNP Missense_Mutation 8 69033181 G C 34 53 BRCA TCGA-B6-A0IJ TNC SNP Silent 9 117825311 G A 46 55 BRCA TCGA-B6-A0IJ TRAF1 SNP Missense_Mutation 9 123671534 G C 34 60 BRCA TCGA-B6-A0IJ IFNA14 SNP Missense_Mutation 9 21239901 C A 18 48 BRCA TCGA-B6-A0IJ C9orf11 SNP Splice_site 9 27289729 G T 34 53 BRCA TCGA-B6-A0IJ ANKRD18B SNP Missense_Mutation 9 33571262 G A 33 47 BRCA TCGA-B6-A0IJ KIAA1045 SNP Silent 9 34971433 C G 25 48 BRCA TCGA-B6-A0IK KIF1B SNP Missense_Mutation 1 10412697 C T 31 58 BRCA TCGA-B6-A0IK ITGA10 SNP Silent 1 145532546 C T 32 56 BRCA TCGA-B6-A0IK C1orf129 SNP Splice_Site 1 170916667 G A 33 66 BRCA TCGA-B6-A0IK NMNAT2 SNP Missense_Mutation 1 183387389 G T 44 72 BRCA TCGA-B6-A0IK KCNT2 SNP Nonsense_Mutation 1 196274447 C A 32 98 BRCA TCGA-B6-A0IK CNTN2 SNP Nonsense_Mutation 1 205030995 C T 29 76 BRCA TCGA-B6-A0IK DSTYK SNP Silent 1 205132057 G A 45 78 BRCA TCGA-B6-A0IK ARID4B SNP Nonsense_Mutation 1 235345181 G C 45 74 BRCA TCGA-B6-A0IK PLCH2 SNP Silent 1 2422690 C T 29 57 BRCA TCGA-B6-A0IK MYOM3 SNP Splice_site 1 24387551 C G 32 80 BRCA TCGA-B6-A0IK HMGN2 SNP Missense_Mutation 1 26799995 G A 33 84 BRCA TCGA-B6-A0IK HMGN2 SNP Missense_Mutation 1 26800201 G A 33 88 BRCA TCGA-B6-A0IK ZBTB8OS SNP Silent 1 33116131 G A 45 51 BRCA TCGA-B6-A0IK ZMYM4 SNP Missense_Mutation 1 35870691 C T 29 80 BRCA TCGA-B6-A0IK RLF SNP Missense_Mutation 1 40702638 C T 29 100 BRCA TCGA-B6-A0IK PLK3 SNP Silent 1 45268477 G A 45 54 BRCA TCGA-B6-A0IK ZCCHC11 SNP Missense_Mutation 1 52956444 G T 45 98 BRCA TCGA-B6-A0IK HOOK1 SNP Missense_Mutation 1 60324118 G C 45 90 BRCA TCGA-B6-A0IK C1orf200 SNP Silent 1 9713891 G A 39 47 BRCA TCGA-B6-A0IK SUFU SNP Missense_Mutation 10 104386944 G A 37 90 BRCA TCGA-B6-A0IK EPC1 SNP Missense_Mutation 10 32594768 T C 52 92 BRCA TCGA-B6-A0IK CSGALNACT2 SNP Missense_Mutation 10 43654238 G C 33 84 BRCA TCGA-B6-A0IK DGAT2 SNP Missense_Mutation 11 75509333 G A 37 68 BRCA TCGA-B6-A0IK TMEM132D SNP Missense_Mutation 12 129569138 G A 40 67 BRCA TCGA-B6-A0IK GALNT9 SNP Missense_Mutation 12 132681759 C G 30 96 BRCA TCGA-B6-A0IK AMIGO2 SNP Silent 12 47471790 C T 28 65 BRCA TCGA-B6-A0IK PFKM SNP Silent 12 48528758 C T 29 97 BRCA TCGA-B6-A0IK CALCOCO1 SNP Silent 12 54109083 C T 29 64 BRCA TCGA-B6-A0IK METTL7B SNP Missense_Mutation 12 56075783 G A 41 91 BRCA TCGA-B6-A0IK ERBB3 SNP Missense_Mutation 12 56482341 G T 41 98 BRCA TCGA-B6-A0IK BAZ2A SNP Missense_Mutation 12 56992955 C T 31 96 BRCA TCGA-B6-A0IK TMEM194A SNP Silent 12 57464509 G A 45 57 BRCA TCGA-B6-A0IK ARHGAP9 SNP Missense_Mutation 12 57871356 C G 32 60 BRCA TCGA-B6-A0IK NOP2 SNP Missense_Mutation 12 6676997 T C 55 54 BRCA TCGA-B6-A0IK NBEA SNP Missense_Mutation 13 35733166 C T 28 96 BRCA TCGA-B6-A0IK DCLK1 SNP Silent 13 36686078 G A 45 65 BRCA TCGA-B6-A0IK CDC42BPB SNP Missense_Mutation 14 103410267 C T 27 49 BRCA TCGA-B6-A0IK NOP9 SNP Silent 14 24771259 C G 32 50 BRCA TCGA-B6-A0IK EML5 SNP Nonsense_Mutation 14 89212617 G T 45 98 BRCA TCGA-B6-A0IK SERPINA10 SNP Missense_Mutation 14 94754811 C A 29 75 BRCA TCGA-B6-A0IK SETD3 SNP Missense_Mutation 14 99865308 G A 39 73 BRCA TCGA-B6-A0IK TLN2 SNP Missense_Mutation 15 63128260 G T 45 100 BRCA TCGA-B6-A0IK ZWILCH SNP Missense_Mutation 15 66807907 C G 32 65 BRCA TCGA-B6-A0IK HOMER2 SNP Silent 15 83523513 G T 43 49 BRCA TCGA-B6-A0IK AKAP13 SNP Missense_Mutation 15 86123811 C T 27 55 BRCA TCGA-B6-A0IK C16orf91 SNP Missense_Mutation 16 1470294 G A 37 44 BRCA TCGA-B6-A0IK PKD1 SNP Missense_Mutation 16 2160622 C T 27 31 BRCA TCGA-B6-A0IK RBBP6 SNP Missense_Mutation 16 24581246 C G 29 92 BRCA TCGA-B6-A0IK ADCY9 SNP Silent 16 4164421 G A 45 56 BRCA TCGA-B6-A0IK C16orf89 SNP Missense_Mutation 16 5097954 C T 29 50 BRCA TCGA-B6-A0IK CDH8 SNP Silent 16 61689531 A G 12 44 BRCA TCGA-B6-A0IK AP1G1 SNP Missense_Mutation 16 71799443 G A 39 52 BRCA TCGA-B6-A0IK ZNF286A SNP Missense_Mutation 17 15620563 C T 32 76 BRCA TCGA-B6-A0IK ZNF286A SNP Silent 17 15620565 C T 29 50 BRCA TCGA-B6-A0IK PLXDC1 SNP Silent 17 37234233 G A 45 56 BRCA TCGA-B6-A0IK KRTAP4-12 SNP Missense_Mutation 17 39280215 C G 17 50 BRCA TCGA-B6-A0IK INTS2 SNP Splice_Site 17 59949625 C A 18 95 BRCA TCGA-B6-A0IK GPR142 SNP Missense_Mutation 17 72368281 G A 37 47 BRCA TCGA-B6-A0IK C17orf77 SNP Silent 17 72588620 G A 39 51 BRCA TCGA-B6-A0IK TP53 SNP Missense_Mutation 17 7578268 A C 3 88 BRCA TCGA-B6-A0IK SMAD2 SNP Nonsense_Mutation 18 45368211 G C 45 100 BRCA TCGA-B6-A0IK CACNA1A SNP Silent 19 13370401 C T 17 60 BRCA TCGA-B6-A0IK CC2D1A SNP Missense_Mutation 19 14034266 G A 37 91 BRCA TCGA-B6-A0IK PKN1 SNP Silent 19 14581434 C T 29 53 BRCA TCGA-B6-A0IK ZNF506 SNP Missense_Mutation 19 19906419 C G 32 50 BRCA TCGA-B6-A0IK EHD2 SNP Silent 19 48244395 G C 45 69 BRCA TCGA-B6-A0IK CGB7 SNP Splice_site 19 49558633 C A 30 48 BRCA TCGA-B6-A0IK SIGLEC5 SNP Silent 19 52130890 C T 32 55 BRCA TCGA-B6-A0IK ZNF677 SNP Missense_Mutation 19 53741048 C T 32 42 BRCA TCGA-B6-A0IK NLRP4 SNP Silent 19 56379195 T A 64 34 BRCA TCGA-B6-A0IK ZNF587 SNP Missense_Mutation 19 58371378 C G 30 57 BRCA TCGA-B6-A0IK MUC16 SNP Missense_Mutation 19 9056568 C T 30 53 BRCA TCGA-B6-A0IK TAF1B SNP Missense_Mutation 2 10008483 C T 32 57 BRCA TCGA-B6-A0IK NPHP1 SNP Missense_Mutation 2 110917730 G A 40 59 BRCA TCGA-B6-A0IK SLC35F5 SNP Missense_Mutation 2 114512753 C T 29 90 BRCA TCGA-B6-A0IK LRP1B SNP Missense_Mutation 2 141458082 C T 30 84 BRCA TCGA-B6-A0IK EPC2 SNP Missense_Mutation 2 149528717 C T 32 91 BRCA TCGA-B6-A0IK BAZ2B SNP Missense_Mutation 2 160261381 C G 32 58 BRCA TCGA-B6-A0IK BAZ2B SNP Missense_Mutation 2 160261407 C G 29 100 BRCA TCGA-B6-A0IK BAZ2B SNP Missense_Mutation 2 160295068 G C 42 76 BRCA TCGA-B6-A0IK ITGB6 SNP Silent 2 160993970 C A 29 58 BRCA TCGA-B6-A0IK NOP58 SNP Silent 2 203162128 C T 23 47 BRCA TCGA-B6-A0IK CRYGC SNP Missense_Mutation 2 208992995 G A 38 57 BRCA TCGA-B6-A0IK UGT1A10 SNP Splice_site 2 234545168 C T 29 30 BRCA TCGA-B6-A0IK THNSL2 SNP Missense_Mutation 2 88472694 G A 40 57 BRCA TCGA-B6-A0IK TGM2 SNP Silent 20 36766744 C T 29 54 BRCA TCGA-B6-A0IK ADNP SNP Missense_Mutation 20 49510210 C T 29 70 BRCA TCGA-B6-A0IK IL17RA SNP Missense_Mutation 22 17579742 G C 45 46 BRCA TCGA-B6-A0IK DRP2 SNP Missense_Mutation 23 100493982 G A 33 92 BRCA TCGA-B6-A0IK GPRASP1 SNP Nonsense_Mutation 23 101912418 C T 31 54 BRCA TCGA-B6-A0IK LRCH2 SNP Missense_Mutation 23 114404908 G T 33 80 BRCA TCGA-B6-A0IK LRCH2 SNP Missense_Mutation 23 114404916 G A 41 94 BRCA TCGA-B6-A0IK SLITRK2 SNP Silent 23 144904063 C T 19 59 BRCA TCGA-B6-A0IK MAGEB17 SNP Nonsense_Mutation 23 16189508 C T 29 61 BRCA TCGA-B6-A0IK SCML1 SNP Missense_Mutation 23 17768113 G A 45 38 BRCA TCGA-B6-A0IK MAGEB3 SNP Missense_Mutation 23 30254772 C T 22 69 BRCA TCGA-B6-A0IK MED12 SNP Silent 23 70357674 C T 25 52 BRCA TCGA-B6-A0IK IMPG2 SNP Missense_Mutation 3 100949976 C T 29 79 BRCA TCGA-B6-A0IK CBLB SNP Missense_Mutation 3 105459369 G C 45 98 BRCA TCGA-B6-A0IK GOLGB1 SNP Missense_Mutation 3 121435775 G A 33 56 BRCA TCGA-B6-A0IK PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-B6-A0IK ZNF167 SNP Missense_Mutation 3 44612634 C T 24 78 BRCA TCGA-B6-A0IK CDCP1 SNP Silent 3 45152068 C A 30 50 BRCA TCGA-B6-A0IK TLR9 SNP Silent 3 52255704 G A 37 48 BRCA TCGA-B6-A0IK OR5H14 SNP Silent 3 97868454 C T 24 48 BRCA TCGA-B6-A0IK C4orf21 SNP Missense_Mutation 4 113481982 G C 33 58 BRCA TCGA-B6-A0IK ANK2 SNP Silent 4 114279248 G A 38 58 BRCA TCGA-B6-A0IK KLF3 SNP Missense_Mutation 4 38690278 G A 45 66 BRCA TCGA-B6-A0IK RUFY3 SNP Missense_Mutation 4 71639285 G A 45 100 BRCA TCGA-B6-A0IK PRKG2 SNP Silent 4 82126025 C T 31 7 BRCA TCGA-B6-A0IK ROPN1L SNP Missense_Mutation 5 10464988 C G 32 51 BRCA TCGA-B6-A0IK CDO1 SNP Missense_Mutation 5 115146915 C G 29 79 BRCA TCGA-B6-A0IK PCDHA10 SNP Missense_Mutation 5 140237804 C T 27 45 BRCA TCGA-B6-A0IK CCDC99 SNP Splice_Site 5 169023706 G A 44 93 BRCA TCGA-B6-A0IK B4GALT7 SNP Silent 5 177031459 C G 32 51 BRCA TCGA-B6-A0IK LIFR SNP Missense_Mutation 5 38504110 C T 29 64 BRCA TCGA-B6-A0IK HCN1 SNP Missense_Mutation 5 45645560 C G 29 75 BRCA TCGA-B6-A0IK ULBP1 SNP Silent 6 150291247 C T 32 47 BRCA TCGA-B6-A0IK SYNJ2 SNP Silent 6 158516838 C G 22 48 BRCA TCGA-B6-A0IK C6orf62 SNP Missense_Mutation 6 24716531 C T 29 100 BRCA TCGA-B6-A0IK BTN2A2 SNP Nonsense_Mutation 6 26388276 C T 21 50 BRCA TCGA-B6-A0IK TNXB SNP Missense_Mutation 6 32041678 C T 27 51 BRCA TCGA-B6-A0IK RIMS1 SNP Missense_Mutation 6 72968780 G A 33 74 BRCA TCGA-B6-A0IK MLL5 SNP Missense_Mutation 7 104752681 G A 37 69 BRCA TCGA-B6-A0IK GPR85 SNP Missense_Mutation 7 112723971 C A 32 88 BRCA TCGA-B6-A0IK PPP1R3A SNP Missense_Mutation 7 113558463 G A 41 86 BRCA TCGA-B6-A0IK MET SNP Silent 7 116436043 G A 43 50 BRCA TCGA-B6-A0IK SMO SNP Missense_Mutation 7 128848650 G A 45 82 BRCA TCGA-B6-A0IK ZC3HAV1 SNP Silent 7 138774481 C T 24 20 BRCA TCGA-B6-A0IK MGAM SNP Splice_site 7 141795512 G C 45 99 BRCA TCGA-B6-A0IK RBM33 SNP Silent 7 155538167 G A 40 24 BRCA TCGA-B6-A0IK DNAH11 SNP Missense_Mutation 7 21882253 G A 41 94 BRCA TCGA-B6-A0IK ABCA13 SNP Missense_Mutation 7 48319443 C G 32 46 BRCA TCGA-B6-A0IK ZNF736 SNP Missense_Mutation 7 63809412 C G 29 79 BRCA TCGA-B6-A0IK ABCB4 SNP Silent 7 87069530 G T 45 72 BRCA TCGA-B6-A0IK STEAP1 SNP Silent 7 89789120 C T 17 47 BRCA TCGA-B6-A0IK RGS22 SNP Missense_Mutation 8 101052243 C T 32 86 BRCA TCGA-B6-A0IK KLHL38 SNP Missense_Mutation 8 124658251 G C 33 65 BRCA TCGA-B6-A0IK LZTS1 SNP Missense_Mutation 8 20110307 C G 30 95 BRCA TCGA-B6-A0IK DUSP4 SNP Splice_Site 8 29194929 C T 32 94 BRCA TCGA-B6-A0IK TGS1 SNP Translation_Start_Site 8 56686093 C A 24 54 BRCA TCGA-B6-A0IK ZFHX4 SNP Missense_Mutation 8 77767690 C G 32 69 BRCA TCGA-B6-A0IK OR13C2 SNP Missense_Mutation 9 107367603 G C 41 54 BRCA TCGA-B6-A0IK ZNF483 SNP Missense_Mutation 9 114305214 G C 33 57 BRCA TCGA-B6-A0IK TNFSF15 SNP Silent 9 117552737 G A 36 52 BRCA TCGA-B6-A0IK TNC SNP Missense_Mutation 9 117848731 C T 29 76 BRCA TCGA-B6-A0IK ODF2 SNP Missense_Mutation 9 131233592 G C 33 54 BRCA TCGA-B6-A0IK ODF2 SNP Silent 9 131235999 G A 45 55 BRCA TCGA-B6-A0IK ODF2 SNP Splice_site 9 131236018 G C 33 84 BRCA TCGA-B6-A0IK SARDH SNP Splice_site 9 136550315 C T 21 92 BRCA TCGA-B6-A0IK PPP1R26 SNP Silent 9 138379215 G A 45 35 BRCA TCGA-B6-A0IK PRUNE2 SNP Silent 9 79239391 C A 29 84 BRCA TCGA-B6-A0IK AGTPBP1 SNP Nonsense_Mutation 9 88233910 G A 45 85 BRCA TCGA-B6-A0IK ECM2 SNP Missense_Mutation 9 95277170 C T 27 51 BRCA TCGA-B6-A0IM KCNH1 SNP Missense_Mutation 1 210857470 C T 23 97 BRCA TCGA-B6-A0IM GATA3 INS Frame_Shift_Ins 10 8115873 - C 54 59 BRCA TCGA-B6-A0IM C1QTNF4 SNP Silent 11 47611487 G A 40 47 BRCA TCGA-B6-A0IM OR4C45 SNP Missense_Mutation 11 48367308 G T 47 68 BRCA TCGA-B6-A0IM TRIP4 SNP Silent 15 64701983 G A 41 59 BRCA TCGA-B6-A0IM IGF1R SNP Silent 15 99478057 C T 19 50 BRCA TCGA-B6-A0IM MAPK8IP3 SNP Missense_Mutation 16 1798259 G T 45 99 BRCA TCGA-B6-A0IM TBC1D29 SNP Missense_Mutation 17 28887183 C T 23 52 BRCA TCGA-B6-A0IM GPS2 DEL Splice_Site 17 7217398 C - 18 84 BRCA TCGA-B6-A0IM NLRP5 SNP Missense_Mutation 19 56538873 G A 40 48 BRCA TCGA-B6-A0IM ZNF416 SNP Missense_Mutation 19 58083540 G A 37 48 BRCA TCGA-B6-A0IM LOC100287041 INS Frame_Shift_Ins 2 110873467 - G 11 58 BRCA TCGA-B6-A0IM STK25 SNP Missense_Mutation 2 242440175 C T 23 99 BRCA TCGA-B6-A0IM PRND SNP Silent 20 4705266 G A 39 38 BRCA TCGA-B6-A0IM SREBF2 SNP Splice_Site 22 42281016 G A 40 81 BRCA TCGA-B6-A0IM CELSR1 SNP Splice_Site 22 46795613 C A 18 97 BRCA TCGA-B6-A0IM PNCK SNP Splice_Site 23 152937334 C A 18 95 BRCA TCGA-B6-A0IM TRO SNP Silent 23 54955782 G A 37 28 BRCA TCGA-B6-A0IM STARD8 SNP Silent 23 67938433 C T 27 37 BRCA TCGA-B6-A0IM EFHB SNP Missense_Mutation 3 19975051 C T 18 50 BRCA TCGA-B6-A0IM TRIM71 SNP Missense_Mutation 3 32933156 G T 48 57 BRCA TCGA-B6-A0IM LOC100287951 SNP Silent 4 10413217 G A 46 58 BRCA TCGA-B6-A0IM ZBTB49 SNP Missense_Mutation 4 4322466 G A 38 75 BRCA TCGA-B6-A0IM RAD50 SNP Missense_Mutation 5 131926953 T C 57 90 BRCA TCGA-B6-A0IM C5orf42 SNP Missense_Mutation 5 37213798 C G 26 49 BRCA TCGA-B6-A0IM NNT SNP Splice_site 5 43702838 G C 35 100 BRCA TCGA-B6-A0IM MAP3K1 SNP Nonsense_Mutation 5 56176548 C T 29 96 BRCA TCGA-B6-A0IM MAP3K1 DEL Frame_Shift_Del 5 56189442 C - 29 95 BRCA TCGA-B6-A0IM ZNF277 SNP Silent 7 111982649 C G 30 50 BRCA TCGA-B6-A0IM OR2F1 SNP Missense_Mutation 7 143657386 G A 44 60 BRCA TCGA-B6-A0IM LMBR1 SNP Silent 7 156521383 T C 62 58 BRCA TCGA-B6-A0IM GLI3 SNP Missense_Mutation 7 42007317 C G 26 66 BRCA TCGA-B6-A0IM SAMD9 SNP Missense_Mutation 7 92733180 G C 36 91 BRCA TCGA-B6-A0IM BAG4 DEL Frame_Shift_Del 8 38067960 TGTT - 55 52 BRCA TCGA-B6-A0IM UNC13B SNP Missense_Mutation 9 35376118 C G 22 100 BRCA TCGA-B6-A0IN LOC728531 DEL Frame_Shift_Del 1 224191297 TCAGATGCCTGGTA - 58 42 BRCA TCGA-B6-A0IN MTR SNP Missense_Mutation 1 236959013 G A 38 60 BRCA TCGA-B6-A0IN TIE1 SNP Silent 1 43773137 G A 35 59 BRCA TCGA-B6-A0IN OR51A7 SNP Missense_Mutation 11 4929530 G T 47 48 BRCA TCGA-B6-A0IN LOC283398 SNP Missense_Mutation 12 94942395 A T 10 76 BRCA TCGA-B6-A0IN ATP12A SNP Silent 13 25281421 C T 26 63 BRCA TCGA-B6-A0IN GPC5 SNP Silent 13 92345973 G A 39 34 BRCA TCGA-B6-A0IN IGHV3-6 SNP Missense_Mutation 14 106322070 T A 59 51 BRCA TCGA-B6-A0IN AP1G2 SNP Missense_Mutation 14 24035346 C T 29 63 BRCA TCGA-B6-A0IN SLC35F4 SNP Missense_Mutation 14 58048140 C T 23 100 BRCA TCGA-B6-A0IN BCMO1 SNP Nonsense_Mutation 16 81279117 C T 25 42 BRCA TCGA-B6-A0IN FANCA DEL Frame_Shift_Del 16 89836576 G - 47 75 BRCA TCGA-B6-A0IN ROCK1 SNP Nonsense_Mutation 18 18586384 G A 47 84 BRCA TCGA-B6-A0IN GIPC3 DEL Frame_Shift_Del 19 3590123 T - 56 81 BRCA TCGA-B6-A0IN ATP5SL SNP Silent 19 41939224 A G 2 24 BRCA TCGA-B6-A0IN LRRC4B SNP Silent 19 51022088 G A 40 55 BRCA TCGA-B6-A0IN BIN1 SNP Silent 2 127806177 G A 38 30 BRCA TCGA-B6-A0IN CDCA7 SNP Missense_Mutation 2 174230273 G A 41 54 BRCA TCGA-B6-A0IN TTN SNP Missense_Mutation 2 179425252 G T 43 88 BRCA TCGA-B6-A0IN TTN SNP Nonsense_Mutation 2 179449558 G A 39 58 BRCA TCGA-B6-A0IN EIF2AK3 INS Frame_Shift_Ins 2 88857363 - C 58 86 BRCA TCGA-B6-A0IN FER1L5 SNP Missense_Mutation 2 97351984 G A 37 80 BRCA TCGA-B6-A0IN RARB SNP Missense_Mutation 3 25542800 G A 41 97 BRCA TCGA-B6-A0IN PARP3 SNP Missense_Mutation 3 51981815 C A 24 60 BRCA TCGA-B6-A0IN LPHN3 SNP Missense_Mutation 4 62935938 T G 59 88 BRCA TCGA-B6-A0IN SNCAIP SNP Missense_Mutation 5 121726839 C T 22 84 BRCA TCGA-B6-A0IN ZNF800 SNP Silent 7 127026205 A G 16 59 BRCA TCGA-B6-A0IN CCDC136 SNP Silent 7 128434806 G A 33 55 BRCA TCGA-B6-A0IN SLC20A2 SNP Nonsense_Mutation 8 42297142 G A 40 54 BRCA TCGA-B6-A0IN ENSG00000237029 SNP Silent 8 86555155 G A 44 51 BRCA TCGA-B6-A0IO FLG2 SNP Missense_Mutation 1 152328629 G T 47 58 BRCA TCGA-B6-A0IO HHAT SNP Missense_Mutation 1 210847683 G T 40 80 BRCA TCGA-B6-A0IO HSPG2 SNP Missense_Mutation 1 22157965 C T 23 97 BRCA TCGA-B6-A0IO ABCB10 SNP Missense_Mutation 1 229663041 C G 29 81 BRCA TCGA-B6-A0IO FAM151A SNP Missense_Mutation 1 55075435 G A 39 57 BRCA TCGA-B6-A0IO CTBS SNP Missense_Mutation 1 85028998 C T 20 57 BRCA TCGA-B6-A0IO C10orf137 SNP Missense_Mutation 10 127429725 G A 33 97 BRCA TCGA-B6-A0IO LOC100289151 SNP Silent 10 15059247 T C 50 46 BRCA TCGA-B6-A0IO AP3M1 SNP Missense_Mutation 10 75884140 G A 45 100 BRCA TCGA-B6-A0IO PTEN SNP Missense_Mutation 10 89692794 A T 8 88 BRCA TCGA-B6-A0IO UBE4A SNP Missense_Mutation 11 118239367 A G 12 76 BRCA TCGA-B6-A0IO NFRKB SNP Silent 11 129762649 T C 54 38 BRCA TCGA-B6-A0IO DDB2 SNP Splice_site 11 47259551 C T 31 85 BRCA TCGA-B6-A0IO PEBP1 SNP Silent 12 118574086 G C 38 51 BRCA TCGA-B6-A0IO ANAPC5 SNP Nonsense_Mutation 12 121746366 C A 30 80 BRCA TCGA-B6-A0IO NCOR2 SNP Missense_Mutation 12 124816874 G C 42 62 BRCA TCGA-B6-A0IO AMHR2 SNP Missense_Mutation 12 53819509 G C 39 72 BRCA TCGA-B6-A0IO TMTC2 SNP Missense_Mutation 12 83526091 G C 37 95 BRCA TCGA-B6-A0IO GTF2F2 SNP Silent 13 45694817 G A 45 61 BRCA TCGA-B6-A0IO DOCK9 SNP Missense_Mutation 13 99460026 A C 1 52 BRCA TCGA-B6-A0IO ARHGEF40 SNP Missense_Mutation 14 21549152 C T 27 54 BRCA TCGA-B6-A0IO TTC7B SNP Missense_Mutation 14 91110527 C T 27 98 BRCA TCGA-B6-A0IO ISLR2 SNP Silent 15 74426742 C T 27 49 BRCA TCGA-B6-A0IO POLG SNP Silent 15 89870412 C T 25 58 BRCA TCGA-B6-A0IO COG8 SNP Silent 16 69370510 G A 45 46 BRCA TCGA-B6-A0IO ZFHX3 SNP Missense_Mutation 16 72993144 C T 27 94 BRCA TCGA-B6-A0IO PLCG2 SNP Silent 16 81902858 C A 29 59 BRCA TCGA-B6-A0IO KCNJ12 SNP Silent 17 21319341 C T 27 40 BRCA TCGA-B6-A0IO ABHD15 SNP Missense_Mutation 17 27889902 C T 19 55 BRCA TCGA-B6-A0IO TMIGD1 SNP Missense_Mutation 17 28656338 C T 23 72 BRCA TCGA-B6-A0IO COASY INS Frame_Shift_Ins 17 40714751 - T 32 47 BRCA TCGA-B6-A0IO KIF1C SNP Missense_Mutation 17 4925966 C T 23 72 BRCA TCGA-B6-A0IO PRKAR1A SNP Silent 17 66521903 T C 61 65 BRCA TCGA-B6-A0IO SLC38A10 SNP Missense_Mutation 17 79226469 C A 17 48 BRCA TCGA-B6-A0IO FAM71E2 SNP Silent 19 55872361 C T 19 38 BRCA TCGA-B6-A0IO RIF1 SNP Missense_Mutation 2 152285358 C T 31 83 BRCA TCGA-B6-A0IO SP100 SNP Missense_Mutation 2 231367806 G C 45 51 BRCA TCGA-B6-A0IO GCKR SNP Missense_Mutation 2 27722054 C A 19 38 BRCA TCGA-B6-A0IO NINL SNP Missense_Mutation 20 25507207 T G 60 49 BRCA TCGA-B6-A0IO TMPRSS6 SNP Missense_Mutation 22 37485669 C G 31 89 BRCA TCGA-B6-A0IO ZNF75D SNP Silent 23 134427818 G A 36 52 BRCA TCGA-B6-A0IO CXorf38 SNP Silent 23 40489945 C T 32 66 BRCA TCGA-B6-A0IO RBM10 SNP Silent 23 47044963 C T 32 49 BRCA TCGA-B6-A0IO USP11 SNP Silent 23 47092577 C T 27 54 BRCA TCGA-B6-A0IO WAS SNP Silent 23 48547798 G A 33 59 BRCA TCGA-B6-A0IO DACH2 SNP Missense_Mutation 23 85404051 C G 23 91 BRCA TCGA-B6-A0IO AADACL2 SNP Missense_Mutation 3 151474973 G A 33 50 BRCA TCGA-B6-A0IO CLCN2 SNP Missense_Mutation 3 184070098 C T 31 60 BRCA TCGA-B6-A0IO MUC4 SNP Missense_Mutation 3 195507062 C T 31 47 BRCA TCGA-B6-A0IO RAD18 SNP Missense_Mutation 3 8932110 G A 33 49 BRCA TCGA-B6-A0IO PCDHA9 SNP Silent 5 140229589 G A 38 56 BRCA TCGA-B6-A0IO MAP3K1 SNP Nonsense_Mutation 5 56168740 C T 19 91 BRCA TCGA-B6-A0IO MAP3K1 DEL Frame_Shift_Del 5 56170880 G - 47 73 BRCA TCGA-B6-A0IO CKMT2 SNP Missense_Mutation 5 80562003 G A 41 100 BRCA TCGA-B6-A0IO ENPP1 SNP Splice_Site 6 132185712 G T 44 99 BRCA TCGA-B6-A0IO C6orf211 SNP Missense_Mutation 6 151789511 C A 32 52 BRCA TCGA-B6-A0IO IPCEF1 DEL Frame_Shift_Del 6 154521037 TG - 55 37 BRCA TCGA-B6-A0IO PLG SNP Missense_Mutation 6 161173261 G A 43 88 BRCA TCGA-B6-A0IO WDR67 SNP Splice_site 8 124162367 G A 33 43 BRCA TCGA-B6-A0IO NEFM SNP Missense_Mutation 8 24774763 G C 33 52 BRCA TCGA-B6-A0IO NEFM SNP Missense_Mutation 8 24775733 G A 45 78 BRCA TCGA-B6-A0IP TMEM132A SNP Missense_Mutation 11 60699241 C T 22 64 BRCA TCGA-B6-A0IP FOLR3 SNP Missense_Mutation 11 71847146 G A 37 86 BRCA TCGA-B6-A0IP FICD SNP Silent 12 108913081 G A 48 43 BRCA TCGA-B6-A0IP PTPRB INS Splice_Site 12 70988244 - A 61 57 BRCA TCGA-B6-A0IP SHF SNP Silent 15 45470457 A G 7 49 BRCA TCGA-B6-A0IP MYO9A SNP Nonsense_Mutation 15 72252308 G A 39 61 BRCA TCGA-B6-A0IP CDH1 DEL Frame_Shift_Del 16 68844104 TC - 62 43 BRCA TCGA-B6-A0IP NCOR1 SNP Nonsense_Mutation 17 15973687 A C 8 39 BRCA TCGA-B6-A0IP NCOR1 INS Splice_Site 17 16055257 - A 61 65 BRCA TCGA-B6-A0IP ZNF594 DEL Frame_Shift_Del 17 5084992 AAAG - 13 58 BRCA TCGA-B6-A0IP TTN SNP Missense_Mutation 2 179436055 T A 50 92 BRCA TCGA-B6-A0IP SLC23A3 SNP Missense_Mutation 2 220034618 T A 52 46 BRCA TCGA-B6-A0IP ACTR2 SNP Silent 2 65480893 A G 11 50 BRCA TCGA-B6-A0IP DNAH6 SNP Missense_Mutation 2 85046494 G A 46 66 BRCA TCGA-B6-A0IP RETSAT SNP Nonsense_Mutation 2 85571790 G A 38 58 BRCA TCGA-B6-A0IP MAGEA10 SNP Nonsense_Mutation 23 151303750 C A 30 53 BRCA TCGA-B6-A0IP PRAF2 SNP Silent 23 48931491 G A 37 47 BRCA TCGA-B6-A0IP MAGIX DEL Splice_site 23 49021699 G - 47 53 BRCA TCGA-B6-A0IP PIK3CA SNP Missense_Mutation 3 178916876 G A 37 97 BRCA TCGA-B6-A0IP PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-B6-A0IP SCN5A SNP Missense_Mutation 3 38651294 C T 23 71 BRCA TCGA-B6-A0IP TBC1D19 SNP Missense_Mutation 4 26750062 G A 37 99 BRCA TCGA-B6-A0IP N4BP2 SNP Missense_Mutation 4 40104198 C A 32 58 BRCA TCGA-B6-A0IP C4orf50 SNP Splice_Site 4 5982066 C A 28 59 BRCA TCGA-B6-A0IP PCDHA2 SNP Silent 5 140175827 C T 23 32 BRCA TCGA-B6-A0IP AIM1 SNP Nonsense_Mutation 6 106968546 A T 5 70 BRCA TCGA-B6-A0IP MLL3 SNP Nonsense_Mutation 7 151878506 G A 47 84 BRCA TCGA-B6-A0IP FAM160B2 SNP Missense_Mutation 8 21957342 G A 39 63 BRCA TCGA-B6-A0IP FCN1 SNP Missense_Mutation 9 137809681 C T 27 41 BRCA TCGA-B6-A0IQ CERS2 SNP Silent 1 150939291 G A 48 61 BRCA TCGA-B6-A0IQ FLG2 SNP Missense_Mutation 1 152323181 A G 14 60 BRCA TCGA-B6-A0IQ OLFML2B SNP Silent 1 161953618 G A 37 50 BRCA TCGA-B6-A0IQ UCK2 SNP Silent 1 165872483 C T 31 56 BRCA TCGA-B6-A0IQ SLC19A2 SNP Missense_Mutation 1 169446469 G T 33 58 BRCA TCGA-B6-A0IQ B3GALT2 SNP Missense_Mutation 1 193150454 C T 23 97 BRCA TCGA-B6-A0IQ MFSD4 SNP Missense_Mutation 1 205549057 G A 41 76 BRCA TCGA-B6-A0IQ CATSPER4 SNP Missense_Mutation 1 26527420 G A 43 57 BRCA TCGA-B6-A0IQ C1orf212 DEL In_Frame_Del 1 35321061 AGATGCCTG - 7 51 BRCA TCGA-B6-A0IQ TRPC6 SNP Silent 11 101344347 G T 33 63 BRCA TCGA-B6-A0IQ CCDC84 SNP Missense_Mutation 11 118869807 A G 7 62 BRCA TCGA-B6-A0IQ IFITM1 DEL Frame_Shift_Del 11 314286 G - 47 72 BRCA TCGA-B6-A0IQ OR4A15 SNP Silent 11 55135638 T C 56 48 BRCA TCGA-B6-A0IQ DDB1 SNP Missense_Mutation 11 61068352 C T 31 98 BRCA TCGA-B6-A0IQ GDPD4 SNP Silent 11 76990360 T A 51 50 BRCA TCGA-B6-A0IQ HOXC12 DEL In_Frame_Del 12 54348878 GCCGTCGGCGGA - 42 75 BRCA TCGA-B6-A0IQ A2M SNP Missense_Mutation 12 9256962 G T 47 67 BRCA TCGA-B6-A0IQ CDC42BPB SNP Silent 14 103416191 G T 37 48 BRCA TCGA-B6-A0IQ TRIM9 SNP Missense_Mutation 14 51444032 A T 11 62 BRCA TCGA-B6-A0IQ TJP1 DEL Frame_Shift_Del 15 30018573 AATGTCTTACCTTTCCCTCGGAAACCCAT - 1 51 BRCA TCGA-B6-A0IQ CD2BP2 DEL Frame_Shift_Del 16 30365584 AG - 3 53 BRCA TCGA-B6-A0IQ C17orf77 SNP Missense_Mutation 17 72588188 G T 47 52 BRCA TCGA-B6-A0IQ ST6GALNAC1 SNP Missense_Mutation 17 74623252 C T 27 46 BRCA TCGA-B6-A0IQ TP53 SNP Nonsense_Mutation 17 7578212 G A 37 66 BRCA TCGA-B6-A0IQ ANKRD30B SNP Missense_Mutation 18 14763786 C G 19 53 BRCA TCGA-B6-A0IQ NOTCH3 SNP Nonsense_Mutation 19 15272363 G A 45 79 BRCA TCGA-B6-A0IQ ATP4A SNP Missense_Mutation 19 36051300 C T 27 92 BRCA TCGA-B6-A0IQ SIPA1L3 SNP Missense_Mutation 19 38682834 G T 42 93 BRCA TCGA-B6-A0IQ CYP2B6 SNP Missense_Mutation 19 41518287 A G 11 84 BRCA TCGA-B6-A0IQ CEACAM6 SNP Splice_site 19 42260867 C T 23 50 BRCA TCGA-B6-A0IQ GPR32 SNP Missense_Mutation 19 51274647 G A 38 53 BRCA TCGA-B6-A0IQ TMC4 SNP Missense_Mutation 19 54675769 C T 26 45 BRCA TCGA-B6-A0IQ OR7D4 SNP Silent 19 9324863 G T 35 47 BRCA TCGA-B6-A0IQ ZC3H15 DEL In_Frame_Del 2 187351168 AGG - 3 76 BRCA TCGA-B6-A0IQ PMS1 SNP Missense_Mutation 2 190682855 G C 45 49 BRCA TCGA-B6-A0IQ ANKRD36C DEL Splice_Site 2 96619685 AC - 14 58 BRCA TCGA-B6-A0IQ KCNQ2 SNP Missense_Mutation 20 62065225 G A 37 74 BRCA TCGA-B6-A0IQ ODZ1 SNP Silent 23 123779072 T A 63 58 BRCA TCGA-B6-A0IQ SMC1A SNP Missense_Mutation 23 53423505 C A 32 73 BRCA TCGA-B6-A0IQ NR1I2 SNP Silent 3 119531721 C T 32 58 BRCA TCGA-B6-A0IQ LEKR1 SNP Missense_Mutation 3 156742606 G A 34 60 BRCA TCGA-B6-A0IQ LRRC2 DEL Frame_Shift_Del 3 46586694 GGATGCCCTTCCTCCT - 43 62 BRCA TCGA-B6-A0IQ VPRBP SNP Missense_Mutation 3 51458151 G T 42 99 BRCA TCGA-B6-A0IQ DNAH1 DEL Frame_Shift_Del 3 52386030 C - 25 63 BRCA TCGA-B6-A0IQ TNIP2 INS Frame_Shift_Ins 4 2746573 - GT 31 71 BRCA TCGA-B6-A0IQ CTNND2 DEL Frame_Shift_Del 5 10981909 G - 39 53 BRCA TCGA-B6-A0IQ TRPC7 SNP Missense_Mutation 5 135561796 T G 51 75 BRCA TCGA-B6-A0IQ AIM1 SNP Missense_Mutation 6 107016426 G A 47 84 BRCA TCGA-B6-A0IQ DOPEY1 SNP Nonsense_Mutation 6 83845441 C T 19 63 BRCA TCGA-B6-A0IQ DGKI SNP Nonsense_Mutation 7 137263039 G A 37 54 BRCA TCGA-B6-A0IQ PION SNP Silent 7 77006204 T C 52 52 BRCA TCGA-B6-A0IQ DOCK5 SNP Silent 8 25265535 G C 40 31 BRCA TCGA-B6-A0IQ SFRP1 SNP Nonsense_Mutation 8 41166389 C T 21 94 BRCA TCGA-B6-A0IQ XKR9 SNP Missense_Mutation 8 71593433 T G 64 64 BRCA TCGA-B6-A0IQ ZNF462 SNP Missense_Mutation 9 109685755 C G 32 65 BRCA TCGA-B6-A0IQ PPP2R4 SNP Missense_Mutation 9 131897091 G T 38 91 BRCA TCGA-B6-A0IQ HAUS6 SNP Missense_Mutation 9 19096764 G C 48 58 BRCA TCGA-B6-A0IQ DENND4C SNP Missense_Mutation 9 19372133 G C 37 75 BRCA TCGA-B6-A0RE LRIF1 SNP Missense_Mutation 1 111492643 C G 29 58 BRCA TCGA-B6-A0RE HIST2H2AC SNP Silent 1 149858596 C A 30 46 BRCA TCGA-B6-A0RE PGLYRP3 SNP Missense_Mutation 1 153271673 C T 24 73 BRCA TCGA-B6-A0RE ADAM15 DEL In_Frame_Del 1 155029738 GCT - 34 76 BRCA TCGA-B6-A0RE FAM163A SNP Missense_Mutation 1 179783227 C T 30 78 BRCA TCGA-B6-A0RE FAM163A SNP Silent 1 179783231 C T 29 58 BRCA TCGA-B6-A0RE SWT1 SNP Nonsense_Mutation 1 185135759 C A 29 72 BRCA TCGA-B6-A0RE SWT1 SNP Missense_Mutation 1 185153935 A T 3 68 BRCA TCGA-B6-A0RE CENPF SNP Missense_Mutation 1 214819500 G A 33 50 BRCA TCGA-B6-A0RE HSPG2 SNP Silent 1 22179535 G T 37 54 BRCA TCGA-B6-A0RE PSEN2 SNP Silent 1 227071456 C T 32 58 BRCA TCGA-B6-A0RE TRIM67 SNP Missense_Mutation 1 231344720 C G 32 87 BRCA TCGA-B6-A0RE HPDL SNP Missense_Mutation 1 45793708 G C 33 50 BRCA TCGA-B6-A0RE CYP4A11 SNP Silent 1 47407052 G T 41 57 BRCA TCGA-B6-A0RE BRDT SNP Missense_Mutation 1 92428491 A T 2 52 BRCA TCGA-B6-A0RE WNT8B SNP Missense_Mutation 10 102239712 C T 23 74 BRCA TCGA-B6-A0RE ARMC4 SNP Missense_Mutation 10 28274135 T C 55 74 BRCA TCGA-B6-A0RE ZWINT SNP Missense_Mutation 10 58118336 T C 58 52 BRCA TCGA-B6-A0RE CYP26A1 SNP Silent 10 94834968 C T 27 48 BRCA TCGA-B6-A0RE AMPD3 SNP Missense_Mutation 11 10508798 C T 23 63 BRCA TCGA-B6-A0RE EIF4G2 SNP Missense_Mutation 11 10827548 G A 41 100 BRCA TCGA-B6-A0RE CBL SNP Silent 11 119142562 G A 39 41 BRCA TCGA-B6-A0RE ACCS SNP Missense_Mutation 11 44104793 C T 28 98 BRCA TCGA-B6-A0RE OR10V1 SNP Missense_Mutation 11 59481034 G C 45 52 BRCA TCGA-B6-A0RE MAP4K2 SNP Missense_Mutation 11 64568469 C G 24 92 BRCA TCGA-B6-A0RE MMP17 INS Frame_Shift_Ins 12 132325312 - T 18 75 BRCA TCGA-B6-A0RE PIK3C2G SNP Missense_Mutation 12 18658303 T G 51 57 BRCA TCGA-B6-A0RE OVCH1 SNP Silent 12 29642562 G A 40 49 BRCA TCGA-B6-A0RE KCNA5 SNP Missense_Mutation 12 5154568 G T 43 83 BRCA TCGA-B6-A0RE LRP1 SNP Missense_Mutation 12 57592310 C T 30 80 BRCA TCGA-B6-A0RE SLC2A3 SNP Splice_site 12 8077007 T C 56 65 BRCA TCGA-B6-A0RE ERCC5 SNP Missense_Mutation 13 103506681 G C 37 84 BRCA TCGA-B6-A0RE LCP1 SNP Missense_Mutation 13 46701779 T A 52 92 BRCA TCGA-B6-A0RE BAZ1A SNP Missense_Mutation 14 35245596 C T 32 99 BRCA TCGA-B6-A0RE GNPNAT1 SNP Missense_Mutation 14 53251239 G C 33 96 BRCA TCGA-B6-A0RE ARID4A SNP Missense_Mutation 14 58831916 C G 29 90 BRCA TCGA-B6-A0RE TGFB3 SNP Missense_Mutation 14 76437505 C T 17 97 BRCA TCGA-B6-A0RE ADAMTS17 SNP Silent 15 100801809 C A 18 53 BRCA TCGA-B6-A0RE PRTG SNP Missense_Mutation 15 56032653 T A 56 62 BRCA TCGA-B6-A0RE RPL4 SNP Missense_Mutation 15 66794137 C G 29 97 BRCA TCGA-B6-A0RE COG7 SNP Silent 16 23403747 G A 41 52 BRCA TCGA-B6-A0RE BCKDK DEL In_Frame_Del 16 31122020 CGG - 31 46 BRCA TCGA-B6-A0RE SEC14L5 SNP Missense_Mutation 16 5009367 C T 22 73 BRCA TCGA-B6-A0RE DPEP3 SNP Silent 16 68010014 G C 33 63 BRCA TCGA-B6-A0RE CHST5 SNP Missense_Mutation 16 75563873 C T 31 55 BRCA TCGA-B6-A0RE PSMD3 SNP Silent 17 38140605 C T 31 47 BRCA TCGA-B6-A0RE KRT222 SNP Missense_Mutation 17 38816255 C G 32 98 BRCA TCGA-B6-A0RE MAPT SNP Missense_Mutation 17 44055781 C G 19 66 BRCA TCGA-B6-A0RE SP6 SNP Silent 17 45925604 C G 27 15 BRCA TCGA-B6-A0RE TP53 DEL Frame_Shift_Del 17 7577031 T - 54 69 BRCA TCGA-B6-A0RE MYO5B SNP Missense_Mutation 18 47500828 G A 38 100 BRCA TCGA-B6-A0RE CDH19 SNP Missense_Mutation 18 64197168 C G 17 59 BRCA TCGA-B6-A0RE C19orf43 SNP Missense_Mutation 19 12841864 C T 29 96 BRCA TCGA-B6-A0RE PDE4C SNP Missense_Mutation 19 18322580 C G 30 94 BRCA TCGA-B6-A0RE LSM4 DEL Frame_Shift_Del 19 18426844 T - 52 84 BRCA TCGA-B6-A0RE ZNF714 SNP Silent 19 21299680 G C 45 47 BRCA TCGA-B6-A0RE DOT1L SNP Silent 19 2220127 G T 46 58 BRCA TCGA-B6-A0RE C19orf29 SNP Splice_site 19 3620705 C G 24 79 BRCA TCGA-B6-A0RE PIAS4 SNP Missense_Mutation 19 4013263 G A 38 43 BRCA TCGA-B6-A0RE ZNF526 SNP Missense_Mutation 19 42730170 C G 17 82 BRCA TCGA-B6-A0RE PSG9 SNP Silent 19 43772123 C T 19 34 BRCA TCGA-B6-A0RE RSPH6A SNP Silent 19 46307798 G A 45 57 BRCA TCGA-B6-A0RE EHD2 SNP Missense_Mutation 19 48229232 C G 17 76 BRCA TCGA-B6-A0RE KLK5 SNP Silent 19 51452296 G C 45 66 BRCA TCGA-B6-A0RE FCAR SNP Silent 19 55399642 C G 24 66 BRCA TCGA-B6-A0RE EPS8L1 SNP Splice_site 19 55598981 G C 45 81 BRCA TCGA-B6-A0RE NLRP5 SNP Missense_Mutation 19 56565089 C A 32 70 BRCA TCGA-B6-A0RE SULT1C3 SNP Missense_Mutation 2 108881768 G C 33 54 BRCA TCGA-B6-A0RE CCDC138 SNP Silent 2 109408173 G A 35 57 BRCA TCGA-B6-A0RE APOB SNP Nonsense_Mutation 2 21241873 G A 45 75 BRCA TCGA-B6-A0RE ENTPD6 SNP Missense_Mutation 20 25198181 G A 39 62 BRCA TCGA-B6-A0RE RBPJL SNP Splice_Site 20 43942673 A T 7 71 BRCA TCGA-B6-A0RE SLC2A10 SNP Missense_Mutation 20 45354529 T C 55 71 BRCA TCGA-B6-A0RE TSPEAR SNP Missense_Mutation 21 45948407 G T 47 80 BRCA TCGA-B6-A0RE GLA SNP Missense_Mutation 23 100658891 C G 29 100 BRCA TCGA-B6-A0RE GPRASP2 SNP Missense_Mutation 23 101970816 T G 60 59 BRCA TCGA-B6-A0RE LAMP2 SNP Silent 23 119565295 G A 40 50 BRCA TCGA-B6-A0RE AFF2 SNP Silent 23 148037858 T C 57 60 BRCA TCGA-B6-A0RE MAGED1 SNP Missense_Mutation 23 51638295 C A 17 50 BRCA TCGA-B6-A0RE FANCD2 SNP Missense_Mutation 3 10107101 C T 28 79 BRCA TCGA-B6-A0RE ALDH1L1 SNP Missense_Mutation 3 125877412 C G 25 51 BRCA TCGA-B6-A0RE IFT122 SNP Missense_Mutation 3 129225321 C G 27 65 BRCA TCGA-B6-A0RE SLCO2A1 SNP Nonsense_Mutation 3 133661572 G T 45 73 BRCA TCGA-B6-A0RE SLCO2A1 SNP Missense_Mutation 3 133667494 C G 18 62 BRCA TCGA-B6-A0RE NUP210 SNP Splice_site 3 13377110 C T 19 22 BRCA TCGA-B6-A0RE RAP2B SNP Missense_Mutation 3 152880727 A G 14 87 BRCA TCGA-B6-A0RE VPS8 SNP Missense_Mutation 3 184577834 A G 16 68 BRCA TCGA-B6-A0RE UBA7 SNP Missense_Mutation 3 49845531 G T 36 58 BRCA TCGA-B6-A0RE ALAS1 SNP Silent 3 52239960 G C 41 47 BRCA TCGA-B6-A0RE CRYBG3 SNP Missense_Mutation 3 97598935 T C 57 78 BRCA TCGA-B6-A0RE GABRR3 SNP Silent 3 97731370 G C 40 53 BRCA TCGA-B6-A0RE LARS SNP Silent 5 145539015 C T 31 47 BRCA TCGA-B6-A0RE STK10 SNP Missense_Mutation 5 171520913 T A 63 43 BRCA TCGA-B6-A0RE SLC34A1 SNP Silent 5 176814833 C T 31 45 BRCA TCGA-B6-A0RE PLK2 DEL In_Frame_Del 5 57750417 CATCTT - 17 99 BRCA TCGA-B6-A0RE PLK2 SNP Missense_Mutation 5 57750425 T A 57 68 BRCA TCGA-B6-A0RE LAMA4 SNP Missense_Mutation 6 112437070 C A 30 92 BRCA TCGA-B6-A0RE MYB SNP Missense_Mutation 6 135520054 C G 17 72 BRCA TCGA-B6-A0RE UTRN SNP Missense_Mutation 6 144837401 G T 44 63 BRCA TCGA-B6-A0RE CCHCR1 SNP Missense_Mutation 6 31117874 T C 59 61 BRCA TCGA-B6-A0RE ITPR3 SNP Silent 6 33589421 C T 32 52 BRCA TCGA-B6-A0RE IP6K3 SNP Missense_Mutation 6 33693353 A T 12 29 BRCA TCGA-B6-A0RE RSPH9 SNP Missense_Mutation 6 43624412 G A 41 77 BRCA TCGA-B6-A0RE RREB1 SNP Missense_Mutation 6 7229968 C T 26 75 BRCA TCGA-B6-A0RE SLC13A1 SNP Missense_Mutation 7 122759197 A T 1 60 BRCA TCGA-B6-A0RE ASB15 SNP Splice_site 7 123256326 A G 3 71 BRCA TCGA-B6-A0RE ZC3HC1 SNP Nonsense_Mutation 7 129663533 G A 37 57 BRCA TCGA-B6-A0RE TRPV6 SNP Silent 7 142573589 G C 33 47 BRCA TCGA-B6-A0RE ABCF2 SNP Missense_Mutation 7 150913108 G T 43 99 BRCA TCGA-B6-A0RE DNAH11 SNP Missense_Mutation 7 21609696 T A 61 86 BRCA TCGA-B6-A0RE CLK2P SNP Missense_Mutation 7 23625479 G T 36 64 BRCA TCGA-B6-A0RE HECW1 SNP Silent 7 43548589 G A 38 47 BRCA TCGA-B6-A0RE ABCA13 SNP Missense_Mutation 7 48285575 A G 2 44 BRCA TCGA-B6-A0RE STEAP4 SNP Silent 7 87910332 C G 21 46 BRCA TCGA-B6-A0RE TRRAP SNP Silent 7 98528369 G A 34 63 BRCA TCGA-B6-A0RE COL22A1 SNP Silent 8 139703109 G A 39 51 BRCA TCGA-B6-A0RE BAI1 SNP Missense_Mutation 8 143569787 T G 55 71 BRCA TCGA-B6-A0RE BNIP3L DNP Missense_Mutation 8 26265560 GA TG 45 65 BRCA TCGA-B6-A0RE FZD3 SNP Missense_Mutation 8 28413307 C A 32 95 BRCA TCGA-B6-A0RE EXTL3 INS Frame_Shift_Ins 8 28574385 - C 41 99 BRCA TCGA-B6-A0RE MCM4 SNP Silent 8 48887464 G A 45 45 BRCA TCGA-B6-A0RE RP1 SNP Missense_Mutation 8 55537315 C A 20 45 BRCA TCGA-B6-A0RE LAPTM4B SNP Nonsense_Mutation 8 98817648 C G 29 84 BRCA TCGA-B6-A0RE C9orf174 SNP Missense_Mutation 9 100075583 A C 11 48 BRCA TCGA-B6-A0RE HEMGN SNP Missense_Mutation 9 100689708 C G 32 52 BRCA TCGA-B6-A0RE ZFP37 SNP Missense_Mutation 9 115818872 C G 30 58 BRCA TCGA-B6-A0RG VANGL2 SNP Missense_Mutation 1 160390918 C G 17 58 BRCA TCGA-B6-A0RG CDK18 DEL Frame_Shift_Del 1 205493367 G - 34 62 BRCA TCGA-B6-A0RG AVPR1B SNP Missense_Mutation 1 206230900 C G 24 85 BRCA TCGA-B6-A0RG TARBP1 SNP Missense_Mutation 1 234565000 C G 28 86 BRCA TCGA-B6-A0RG ARID1A SNP Nonsense_Mutation 1 27106498 C T 17 66 BRCA TCGA-B6-A0RG TINAGL1 SNP Missense_Mutation 1 32051469 G C 33 79 BRCA TCGA-B6-A0RG MARCKSL1 SNP Missense_Mutation 1 32800430 G C 41 68 BRCA TCGA-B6-A0RG CUBN SNP Silent 10 16975114 A G 6 51 BRCA TCGA-B6-A0RG ARHGAP12 SNP Missense_Mutation 10 32143011 C T 29 98 BRCA TCGA-B6-A0RG IGSF9B SNP Missense_Mutation 11 133791281 C T 26 93 BRCA TCGA-B6-A0RG RAG1 SNP Missense_Mutation 11 36595870 A T 10 89 BRCA TCGA-B6-A0RG TRIM21 SNP Missense_Mutation 11 4410964 C T 26 56 BRCA TCGA-B6-A0RG B3GAT3 SNP Missense_Mutation 11 62383253 G A 37 68 BRCA TCGA-B6-A0RG FAM71C SNP Missense_Mutation 12 100042152 G A 37 42 BRCA TCGA-B6-A0RG UTP20 SNP Missense_Mutation 12 101748696 A G 11 52 BRCA TCGA-B6-A0RG PZP SNP Missense_Mutation 12 9307416 C G 28 49 BRCA TCGA-B6-A0RG PARP4 SNP Missense_Mutation 13 25023909 C A 25 69 BRCA TCGA-B6-A0RG PARP4 SNP Missense_Mutation 13 25034250 T A 64 82 BRCA TCGA-B6-A0RG CYSLTR2 SNP Silent 13 49281046 C T 25 55 BRCA TCGA-B6-A0RG HECTD1 SNP Missense_Mutation 14 31597881 G C 33 68 BRCA TCGA-B6-A0RG ANPEP SNP Missense_Mutation 15 90349748 C T 19 40 BRCA TCGA-B6-A0RG SYNM SNP Nonsense_Mutation 15 99671359 G T 37 79 BRCA TCGA-B6-A0RG KIAA0430 DEL Frame_Shift_Del 16 15727535 ATGA - 12 92 BRCA TCGA-B6-A0RG TNRC6A SNP Missense_Mutation 16 24831678 C T 22 84 BRCA TCGA-B6-A0RG CHD9 SNP Silent 16 53308140 G A 45 45 BRCA TCGA-B6-A0RG ZFHX3 SNP Missense_Mutation 16 72832049 C A 22 100 BRCA TCGA-B6-A0RG EMC8 SNP Missense_Mutation 16 85822653 C G 29 98 BRCA TCGA-B6-A0RG MAP2K4 DEL Frame_Shift_Del 17 12016647 AA - 5 48 BRCA TCGA-B6-A0RG HOXB3 SNP Silent 17 46628038 C T 27 50 BRCA TCGA-B6-A0RG MKS1 SNP Missense_Mutation 17 56285876 T C 52 54 BRCA TCGA-B6-A0RG PIAS2 SNP Missense_Mutation 18 44392457 C G 20 65 BRCA TCGA-B6-A0RG IL27RA SNP Missense_Mutation 19 14143218 T G 59 67 BRCA TCGA-B6-A0RG FKBP8 SNP Missense_Mutation 19 18652645 C G 32 62 BRCA TCGA-B6-A0RG ZNF347 SNP Missense_Mutation 19 53645287 C G 30 45 BRCA TCGA-B6-A0RG FUT3 SNP Missense_Mutation 19 5843908 G T 39 37 BRCA TCGA-B6-A0RG NEB SNP Missense_Mutation 2 152381061 T C 62 92 BRCA TCGA-B6-A0RG KBTBD10 SNP Missense_Mutation 2 170382147 G T 46 98 BRCA TCGA-B6-A0RG PDE1A SNP Missense_Mutation 2 183051216 G A 36 46 BRCA TCGA-B6-A0RG ERBB4 SNP Missense_Mutation 2 212488741 G T 48 100 BRCA TCGA-B6-A0RG SP140 SNP Silent 2 231110630 C G 21 51 BRCA TCGA-B6-A0RG MTIF2 SNP Splice_site 2 55490776 C G 24 71 BRCA TCGA-B6-A0RG DNMT3B SNP Missense_Mutation 20 31393152 T C 49 63 BRCA TCGA-B6-A0RG TSSK2 SNP Missense_Mutation 22 19119973 G A 43 55 BRCA TCGA-B6-A0RG LZTR1 DEL Frame_Shift_Del 22 21350992 T - 60 89 BRCA TCGA-B6-A0RG NRK DEL Frame_Shift_Del 23 105190375 GATTTTCTTCAGCTCAGCAGATG - 33 57 BRCA TCGA-B6-A0RG ACSL4 SNP Missense_Mutation 23 108921590 G C 36 82 BRCA TCGA-B6-A0RG RNF113A SNP Silent 23 119005193 G A 38 42 BRCA TCGA-B6-A0RG ATR SNP Silent 3 142231145 T C 52 55 BRCA TCGA-B6-A0RG PLCH1 SNP Silent 3 155203418 G T 40 99 BRCA TCGA-B6-A0RG PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-B6-A0RG DGKG SNP Silent 3 186015250 A G 16 42 BRCA TCGA-B6-A0RG ZNF852 DEL Frame_Shift_Del 3 44540795 C - 32 74 BRCA TCGA-B6-A0RG DCBLD2 SNP Silent 3 98538119 C A 27 50 BRCA TCGA-B6-A0RG CAMK2D SNP Missense_Mutation 4 114378512 C T 22 100 BRCA TCGA-B6-A0RG SPINK13 SNP Missense_Mutation 5 147661790 C G 17 55 BRCA TCGA-B6-A0RG PLEKHG4B SNP Missense_Mutation 5 169511 G A 39 74 BRCA TCGA-B6-A0RG PPT2 SNP Missense_Mutation 6 32130348 C G 32 54 BRCA TCGA-B6-A0RG CUL9 SNP Missense_Mutation 6 43171720 C G 32 51 BRCA TCGA-B6-A0RG MYO6 SNP Missense_Mutation 6 76576288 G C 37 100 BRCA TCGA-B6-A0RG PIK3CG SNP Silent 7 106522642 T A 59 45 BRCA TCGA-B6-A0RG CFTR SNP Nonsense_Mutation 7 117188875 A T 5 87 BRCA TCGA-B6-A0RG ZNF746 SNP Missense_Mutation 7 149171728 G A 40 97 BRCA TCGA-B6-A0RG POU6F2 SNP Missense_Mutation 7 39247072 C G 24 100 BRCA TCGA-B6-A0RG ADCY8 SNP Missense_Mutation 8 131793094 C T 19 100 BRCA TCGA-B6-A0RG PTPRD SNP Missense_Mutation 9 8341823 T G 51 94 BRCA TCGA-B6-A0RG ZCCHC6 SNP Missense_Mutation 9 88938364 C G 32 48 BRCA TCGA-B6-A0RH PTPN22 SNP Missense_Mutation 1 114397570 A C 2 51 BRCA TCGA-B6-A0RH TARS2 SNP Missense_Mutation 1 150479529 G A 33 69 BRCA TCGA-B6-A0RH MIA3 SNP Silent 1 222801435 G A 33 55 BRCA TCGA-B6-A0RH PSEN2 SNP Missense_Mutation 1 227069706 A G 11 71 BRCA TCGA-B6-A0RH EPHB2 SNP Missense_Mutation 1 23222000 C T 20 96 BRCA TCGA-B6-A0RH TSPAN1 SNP Missense_Mutation 1 46650495 C G 29 54 BRCA TCGA-B6-A0RH KAT6B SNP Missense_Mutation 10 76739051 G A 45 100 BRCA TCGA-B6-A0RH DEPDC7 SNP Nonsense_Mutation 11 33047294 C T 19 76 BRCA TCGA-B6-A0RH TBK1 SNP Silent 12 64875760 A G 2 63 BRCA TCGA-B6-A0RH CLEC4E DEL Frame_Shift_Del 12 8692538 CT - 24 48 BRCA TCGA-B6-A0RH CLEC4E SNP Splice_site 12 8692543 T A 54 51 BRCA TCGA-B6-A0RH RTL1 SNP Missense_Mutation 14 101348922 A G 10 79 BRCA TCGA-B6-A0RH SYNE2 SNP Silent 14 64636985 G A 44 52 BRCA TCGA-B6-A0RH TMC5 SNP Missense_Mutation 16 19451502 C G 22 50 BRCA TCGA-B6-A0RH MAP2K4 INS Splice_Site 17 12011227 - T 36 98 BRCA TCGA-B6-A0RH RNF135 SNP Missense_Mutation 17 29325839 C T 32 67 BRCA TCGA-B6-A0RH KRT28 SNP Missense_Mutation 17 38954517 C G 32 56 BRCA TCGA-B6-A0RH TP53 SNP Missense_Mutation 17 7578190 T G 49 88 BRCA TCGA-B6-A0RH BAHCC1 SNP Missense_Mutation 17 79422327 G C 41 79 BRCA TCGA-B6-A0RH WDR7 SNP Missense_Mutation 18 54385232 A T 10 92 BRCA TCGA-B6-A0RH C19orf40 SNP Splice_Site 19 33464469 G A 48 91 BRCA TCGA-B6-A0RH PPP1R14A DEL Frame_Shift_Del 19 38743550 CTCTC - 32 72 BRCA TCGA-B6-A0RH DTNB SNP Nonsense_Mutation 2 25861892 G A 40 59 BRCA TCGA-B6-A0RH COL18A1 SNP Missense_Mutation 21 46888236 G A 37 59 BRCA TCGA-B6-A0RH LOC100288508 INS Frame_Shift_Ins 21 47546385 - GGCCC 55 47 BRCA TCGA-B6-A0RH VPREB1 SNP Silent 22 22599458 C T 31 44 BRCA TCGA-B6-A0RH UPK3A SNP Missense_Mutation 22 45681971 G A 37 55 BRCA TCGA-B6-A0RH PARP14 SNP Missense_Mutation 3 122399872 C T 30 64 BRCA TCGA-B6-A0RH SI SNP Nonsense_Mutation 3 164716394 G A 40 58 BRCA TCGA-B6-A0RH PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-B6-A0RH IP6K2 INS Frame_Shift_Ins 3 48732632 - C 38 43 BRCA TCGA-B6-A0RH GPR125 SNP Missense_Mutation 4 22390523 G A 42 75 BRCA TCGA-B6-A0RH SEC24A SNP Silent 5 134059307 C T 29 49 BRCA TCGA-B6-A0RH PDGFRB SNP Missense_Mutation 5 149510159 C T 19 61 BRCA TCGA-B6-A0RH SH3PXD2B SNP Missense_Mutation 5 171766429 A C 1 35 BRCA TCGA-B6-A0RH AGGF1 SNP Missense_Mutation 5 76349814 G A 40 51 BRCA TCGA-B6-A0RH FAM71F2 SNP Silent 7 128317709 C T 32 52 BRCA TCGA-B6-A0RH CSGALNACT1 SNP Missense_Mutation 8 19263493 C T 23 96 BRCA TCGA-B6-A0RH SVEP1 SNP Missense_Mutation 9 113169979 A G 1 53 BRCA TCGA-B6-A0RH SMARCA2 SNP Missense_Mutation 9 2116045 A G 4 93 BRCA TCGA-B6-A0RH FAM75D1 SNP Missense_Mutation 9 84605378 G T 41 52 BRCA TCGA-B6-A0RH CTSL2 SNP Missense_Mutation 9 99798887 C G 18 91 BRCA TCGA-B6-A0RI WNT2B SNP Missense_Mutation 1 113057615 G A 37 66 BRCA TCGA-B6-A0RI SPEN SNP Missense_Mutation 1 16263797 C G 30 75 BRCA TCGA-B6-A0RI PKN2 SNP Nonsense_Mutation 1 89299057 C T 31 73 BRCA TCGA-B6-A0RI CALCA SNP Splice_Site 11 14991622 C T 24 93 BRCA TCGA-B6-A0RI OR56B4 INS In_Frame_Ins 11 6129525 - ACT 17 42 BRCA TCGA-B6-A0RI UTP20 SNP Missense_Mutation 12 101723202 C T 29 100 BRCA TCGA-B6-A0RI TBX3 INS Frame_Shift_Ins 12 115117430 - T 44 69 BRCA TCGA-B6-A0RI SPG20 SNP Silent 13 36886475 T G 53 52 BRCA TCGA-B6-A0RI CTCF SNP Splice_Site 16 67645518 T G 57 91 BRCA TCGA-B6-A0RI ZC3H18 DEL Frame_Shift_Del 16 88690436 A - 5 80 BRCA TCGA-B6-A0RI MAP2K4 DEL Frame_Shift_Del 17 12016657 GGCTGTA - 47 94 BRCA TCGA-B6-A0RI USP36 SNP Missense_Mutation 17 76799549 C T 27 47 BRCA TCGA-B6-A0RI MSTN SNP Silent 2 190922215 G A 37 50 BRCA TCGA-B6-A0RI CYP2D7P1 SNP Silent 22 42537329 C T 31 71 BRCA TCGA-B6-A0RI THOC2 SNP Silent 23 122830573 G C 33 42 BRCA TCGA-B6-A0RI IL21 SNP Splice_site 4 123536991 G T 48 48 BRCA TCGA-B6-A0RI LRBA SNP Silent 4 151392804 C T 20 50 BRCA TCGA-B6-A0RI FTMT SNP Silent 5 121187814 C T 23 46 BRCA TCGA-B6-A0RI SLC26A4 INS Frame_Shift_Ins 7 107342369 - A 49 87 BRCA TCGA-B6-A0RI GCK SNP Splice_site 7 44198720 C G 32 48 BRCA TCGA-B6-A0RI FAM49B SNP Missense_Mutation 8 130891697 A C 3 89 BRCA TCGA-B6-A0RI ABCA1 SNP Missense_Mutation 9 107550711 C G 26 89 BRCA TCGA-B6-A0RL AGL SNP Missense_Mutation 1 100366362 C T 21 98 BRCA TCGA-B6-A0RL ESRRG SNP Missense_Mutation 1 216692549 C T 29 100 BRCA TCGA-B6-A0RL AKT3 SNP Nonsense_Mutation 1 243716070 G T 45 100 BRCA TCGA-B6-A0RL PODN SNP Missense_Mutation 1 53537256 G A 39 57 BRCA TCGA-B6-A0RL GBP2 SNP Nonsense_Mutation 1 89575880 G A 45 55 BRCA TCGA-B6-A0RL MKI67 SNP Missense_Mutation 10 129913650 T C 54 57 BRCA TCGA-B6-A0RL ATM SNP Missense_Mutation 11 108200961 G A 37 82 BRCA TCGA-B6-A0RL GTF2H1 SNP Missense_Mutation 11 18387353 G A 46 95 BRCA TCGA-B6-A0RL ANO3 SNP Missense_Mutation 11 26463534 G A 46 77 BRCA TCGA-B6-A0RL NLRP6 SNP Silent 11 285169 G T 47 51 BRCA TCGA-B6-A0RL PAMR1 SNP Missense_Mutation 11 35454047 G A 43 100 BRCA TCGA-B6-A0RL F2 SNP Missense_Mutation 11 46750305 G T 46 100 BRCA TCGA-B6-A0RL CACNA1C SNP Missense_Mutation 12 2787007 G A 38 97 BRCA TCGA-B6-A0RL CHAC1 SNP Missense_Mutation 15 41247950 A C 11 62 BRCA TCGA-B6-A0RL SLTM SNP Silent 15 59182618 G C 46 60 BRCA TCGA-B6-A0RL HCN4 SNP Silent 15 73636011 G A 37 59 BRCA TCGA-B6-A0RL GSPT1 SNP Missense_Mutation 16 11984967 G A 40 95 BRCA TCGA-B6-A0RL C16orf54 SNP Missense_Mutation 16 29755702 G A 38 53 BRCA TCGA-B6-A0RL FBXL19 SNP Missense_Mutation 16 30936072 G A 39 74 BRCA TCGA-B6-A0RL TEX2 SNP Missense_Mutation 17 62290439 A G 16 28 BRCA TCGA-B6-A0RL HGS SNP Missense_Mutation 17 79663674 G A 38 80 BRCA TCGA-B6-A0RL THOC1 SNP Missense_Mutation 18 259687 C T 25 79 BRCA TCGA-B6-A0RL PLVAP SNP Silent 19 17476158 C T 23 43 BRCA TCGA-B6-A0RL PRKCG SNP Missense_Mutation 19 54392993 G A 45 94 BRCA TCGA-B6-A0RL DHRS9 DEL Frame_Shift_Del 2 169948337 A - 8 90 BRCA TCGA-B6-A0RL TRAK2 SNP Missense_Mutation 2 202254601 T G 52 56 BRCA TCGA-B6-A0RL UNC80 SNP Missense_Mutation 2 210685368 G A 39 83 BRCA TCGA-B6-A0RL SLC4A3 SNP Silent 2 220494977 C T 25 71 BRCA TCGA-B6-A0RL CHGB SNP Missense_Mutation 20 5904101 G T 33 51 BRCA TCGA-B6-A0RL COL18A1 SNP Missense_Mutation 21 46917566 G A 39 82 BRCA TCGA-B6-A0RL CCDC116 SNP Missense_Mutation 22 21990886 C G 24 63 BRCA TCGA-B6-A0RL TRIOBP SNP Missense_Mutation 22 38120815 G A 39 51 BRCA TCGA-B6-A0RL EP300 SNP Nonsense_Mutation 22 41545099 C T 29 97 BRCA TCGA-B6-A0RL VBP1 SNP Missense_Mutation 23 154444844 G A 40 60 BRCA TCGA-B6-A0RL PQBP1 SNP Missense_Mutation 23 48759265 G A 45 89 BRCA TCGA-B6-A0RL PQBP1 SNP Splice_Site 23 48759509 G C 33 75 BRCA TCGA-B6-A0RL PQBP1 SNP Missense_Mutation 23 48759764 G A 41 84 BRCA TCGA-B6-A0RL PHF8 SNP Silent 23 54069156 G A 35 52 BRCA TCGA-B6-A0RL SHROOM2 SNP Missense_Mutation 23 9914895 G A 39 93 BRCA TCGA-B6-A0RL SIDT1 SNP Silent 3 113286552 G A 34 67 BRCA TCGA-B6-A0RL GRAMD1C SNP Missense_Mutation 3 113656968 C G 32 56 BRCA TCGA-B6-A0RL RBM6 SNP Splice_site 3 50000075 A T 12 76 BRCA TCGA-B6-A0RL CNTN3 SNP Missense_Mutation 3 74350659 A G 14 78 BRCA TCGA-B6-A0RL PPARGC1A SNP Missense_Mutation 4 23830085 C A 28 80 BRCA TCGA-B6-A0RL HGFAC SNP Missense_Mutation 4 3449688 G A 46 93 BRCA TCGA-B6-A0RL YIPF7 SNP Silent 4 44626683 G A 38 49 BRCA TCGA-B6-A0RL MTHFD2L SNP Silent 4 75147227 G A 45 49 BRCA TCGA-B6-A0RL DGKQ SNP Silent 4 956304 G A 45 52 BRCA TCGA-B6-A0RL SLC6A18 DEL Frame_Shift_Del 5 1235615 G - 35 57 BRCA TCGA-B6-A0RL PCDHGB6 SNP Missense_Mutation 5 140789195 G A 38 82 BRCA TCGA-B6-A0RL SH3RF2 SNP Missense_Mutation 5 145383714 G A 33 99 BRCA TCGA-B6-A0RL NOP16 SNP Missense_Mutation 5 175812286 G A 36 56 BRCA TCGA-B6-A0RL CAPZA2 SNP Silent 7 116557813 G A 39 55 BRCA TCGA-B6-A0RL DLGAP2 SNP Missense_Mutation 8 1626541 C T 27 86 BRCA TCGA-B6-A0RL CHCHD7 SNP Silent 8 57129964 C T 32 53 BRCA TCGA-B6-A0RL PAEP SNP Missense_Mutation 9 138456093 C T 19 51 BRCA TCGA-B6-A0RM NGF SNP Silent 1 115829015 C T 23 45 BRCA TCGA-B6-A0RM RGSL1 SNP Missense_Mutation 1 182442910 G A 40 32 BRCA TCGA-B6-A0RM KIF2C SNP Silent 1 45221633 G A 41 55 BRCA TCGA-B6-A0RM NASP SNP Missense_Mutation 1 46080700 C T 28 97 BRCA TCGA-B6-A0RM GSTO2 SNP Missense_Mutation 10 106057391 A G 12 75 BRCA TCGA-B6-A0RM GRIK4 SNP Missense_Mutation 11 120531052 G T 44 71 BRCA TCGA-B6-A0RM IGSF22 SNP Missense_Mutation 11 18738496 C T 27 56 BRCA TCGA-B6-A0RM OR51D1 SNP Missense_Mutation 11 4661784 T C 50 55 BRCA TCGA-B6-A0RM INPPL1 SNP Silent 11 71943727 C T 29 58 BRCA TCGA-B6-A0RM NEK5 SNP Missense_Mutation 13 52676092 C T 31 36 BRCA TCGA-B6-A0RM RTN1 DEL Frame_Shift_Del 14 60212850 AATGTATTTATAGG - 5 58 BRCA TCGA-B6-A0RM FAM71D SNP Silent 14 67675050 A G 1 43 BRCA TCGA-B6-A0RM YLPM1 SNP Missense_Mutation 14 75264488 C T 30 68 BRCA TCGA-B6-A0RM SAMD15 SNP Missense_Mutation 14 77844471 A G 1 48 BRCA TCGA-B6-A0RM SPTBN5 SNP Silent 15 42143319 G A 45 44 BRCA TCGA-B6-A0RM TBC1D21 SNP Missense_Mutation 15 74181422 T A 52 50 BRCA TCGA-B6-A0RM FES SNP Missense_Mutation 15 91436376 G T 48 100 BRCA TCGA-B6-A0RM ST3GAL2 SNP Silent 16 70432269 G A 39 14 BRCA TCGA-B6-A0RM SLC35G3 SNP Missense_Mutation 17 33521200 C A 26 60 BRCA TCGA-B6-A0RM KANSL1 SNP Nonsense_Mutation 17 44171973 G A 37 78 BRCA TCGA-B6-A0RM ITGB4 SNP Splice_site 17 73733725 G A 35 72 BRCA TCGA-B6-A0RM ZNF585B SNP Missense_Mutation 19 37677742 C T 29 57 BRCA TCGA-B6-A0RM LGALS14 SNP Missense_Mutation 19 40197252 C T 26 49 BRCA TCGA-B6-A0RM LILRA3 SNP Missense_Mutation 19 54803118 C T 19 43 BRCA TCGA-B6-A0RM KIR3DX1 SNP Missense_Mutation 19 55048304 G A 39 61 BRCA TCGA-B6-A0RM NAB1 DEL Frame_Shift_Del 2 191524294 C - 28 57 BRCA TCGA-B6-A0RM CACNA1I SNP Silent 22 40045729 C T 27 54 BRCA TCGA-B6-A0RM HRASLS SNP Missense_Mutation 3 192988414 G A 40 61 BRCA TCGA-B6-A0RM SLC6A20 SNP Silent 3 45812813 G A 45 65 BRCA TCGA-B6-A0RM MAP3K1 SNP Nonsense_Mutation 5 56168719 C T 25 91 BRCA TCGA-B6-A0RM MAP3K1 SNP Missense_Mutation 5 56184097 T A 59 56 BRCA TCGA-B6-A0RM KIF13A SNP Splice_site 6 17777584 G A 42 85 BRCA TCGA-B6-A0RM TRPS1 DEL Frame_Shift_Del 8 116632154 TTCTGACATC - 64 89 BRCA TCGA-B6-A0RM TRPS1 DEL In_Frame_Del 8 116632168 CTG - 32 91 BRCA TCGA-B6-A0RN ASPM SNP Silent 1 197059075 C T 25 57 BRCA TCGA-B6-A0RN CEP170 SNP Missense_Mutation 1 243289876 G A 33 66 BRCA TCGA-B6-A0RN PANK4 SNP Missense_Mutation 1 2453186 T C 63 69 BRCA TCGA-B6-A0RN JUN DEL Frame_Shift_Del 1 59248498 T - 55 88 BRCA TCGA-B6-A0RN GBP1 DEL In_Frame_Del 1 89521803 CTT - 20 51 BRCA TCGA-B6-A0RN HFM1 SNP Missense_Mutation 1 91727807 A G 2 53 BRCA TCGA-B6-A0RN USP54 SNP Missense_Mutation 10 75276172 C G 22 58 BRCA TCGA-B6-A0RN CASC1 SNP Missense_Mutation 12 25307302 G T 48 54 BRCA TCGA-B6-A0RN LOC643677 SNP Silent 13 103393999 G A 42 49 BRCA TCGA-B6-A0RN THBS1 SNP Missense_Mutation 15 39883768 A G 16 62 BRCA TCGA-B6-A0RN NEIL1 SNP Missense_Mutation 15 75647320 G A 39 46 BRCA TCGA-B6-A0RN ZNF592 SNP Missense_Mutation 15 85341673 G T 40 60 BRCA TCGA-B6-A0RN CBFB SNP Missense_Mutation 16 67100598 C T 28 97 BRCA TCGA-B6-A0RN SCN4A SNP Silent 17 62018350 G A 40 41 BRCA TCGA-B6-A0RN LYPD4 SNP Missense_Mutation 19 42342215 C T 23 61 BRCA TCGA-B6-A0RN TMEM145 SNP Missense_Mutation 19 42820840 C A 24 69 BRCA TCGA-B6-A0RN PNPLA6 SNP Silent 19 7605077 C T 26 55 BRCA TCGA-B6-A0RN IHH SNP Missense_Mutation 2 219920576 C T 27 99 BRCA TCGA-B6-A0RN MLPH SNP Silent 2 238461047 C T 19 50 BRCA TCGA-B6-A0RN MYH9 INS In_Frame_Ins 22 36697633 - GAG 62 79 BRCA TCGA-B6-A0RN CCNB3 SNP Missense_Mutation 23 50094618 A T 3 58 BRCA TCGA-B6-A0RN GSPT2 SNP Missense_Mutation 23 51488514 A G 5 81 BRCA TCGA-B6-A0RN WWTR1 SNP Silent 3 149243909 C A 26 51 BRCA TCGA-B6-A0RN TBL1XR1 SNP Missense_Mutation 3 176765098 C A 30 100 BRCA TCGA-B6-A0RN PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-B6-A0RN FBXW12 SNP Missense_Mutation 3 48416853 C T 19 40 BRCA TCGA-B6-A0RN NEK1 SNP Silent 4 170321765 G A 38 53 BRCA TCGA-B6-A0RN SLC2A9 SNP Silent 4 9836553 G A 45 57 BRCA TCGA-B6-A0RN PCDHGC3 SNP Silent 5 140857180 A G 3 48 BRCA TCGA-B6-A0RN GABRG2 SNP Missense_Mutation 5 161522529 G A 48 100 BRCA TCGA-B6-A0RN BTNL9 SNP Missense_Mutation 5 180486582 G A 38 57 BRCA TCGA-B6-A0RN PCOLCE SNP Silent 7 100203382 C G 23 43 BRCA TCGA-B6-A0RN XKR6 SNP Silent 8 10755750 G A 39 67 BRCA TCGA-B6-A0RN RP1 SNP Silent 8 55533670 C T 31 47 BRCA TCGA-B6-A0RN OR1L6 SNP Missense_Mutation 9 125512494 G A 39 96 BRCA TCGA-B6-A0RN IL33 SNP Missense_Mutation 9 6252949 T G 61 61 BRCA TCGA-B6-A0RN PTCH1 SNP Missense_Mutation 9 98215818 C T 19 81 BRCA TCGA-B6-A0RO FHAD1 SNP Missense_Mutation 1 15708607 C T 26 78 BRCA TCGA-B6-A0RO SPEN SNP Nonsense_Mutation 1 16257012 T A 61 89 BRCA TCGA-B6-A0RO RYR2 SNP Missense_Mutation 1 237608771 G A 38 79 BRCA TCGA-B6-A0RO OR2C3 SNP Silent 1 247695646 G A 41 53 BRCA TCGA-B6-A0RO SORCS3 SNP Silent 10 106974227 C T 25 70 BRCA TCGA-B6-A0RO RPP38 SNP Missense_Mutation 10 15145342 G A 39 60 BRCA TCGA-B6-A0RO RNLS DEL In_Frame_Del 10 90332770 TCT - 50 63 BRCA TCGA-B6-A0RO OR4A15 SNP Missense_Mutation 11 55136222 G T 35 51 BRCA TCGA-B6-A0RO OR4D10 SNP Missense_Mutation 11 59245446 C T 21 60 BRCA TCGA-B6-A0RO DDB1 SNP Missense_Mutation 11 61093120 C T 18 100 BRCA TCGA-B6-A0RO FOLR4 DEL Frame_Shift_Del 11 94040778 CTCTTCGCCAG - 24 54 BRCA TCGA-B6-A0RO EP400 SNP Missense_Mutation 12 132498069 C T 25 99 BRCA TCGA-B6-A0RO PCED1B SNP Missense_Mutation 12 47629963 T A 64 68 BRCA TCGA-B6-A0RO RNF41 SNP Missense_Mutation 12 56604349 G A 44 98 BRCA TCGA-B6-A0RO E2F7 SNP Missense_Mutation 12 77449886 T C 56 65 BRCA TCGA-B6-A0RO DCUN1D2 SNP Missense_Mutation 13 114138226 G A 37 59 BRCA TCGA-B6-A0RO SERPINE3 SNP Missense_Mutation 13 51922387 C A 28 64 BRCA TCGA-B6-A0RO IRF9 SNP Missense_Mutation 14 24631510 G T 41 73 BRCA TCGA-B6-A0RO DCAF5 SNP Missense_Mutation 14 69520662 T A 51 63 BRCA TCGA-B6-A0RO NCOR1 SNP Silent 17 15983302 T A 51 39 BRCA TCGA-B6-A0RO DMKN SNP Splice_site 19 35999142 C T 22 57 BRCA TCGA-B6-A0RO UHRF1 SNP Silent 19 4954731 C A 29 51 BRCA TCGA-B6-A0RO TTN SNP Silent 2 179585182 G A 37 48 BRCA TCGA-B6-A0RO UBE2E3 SNP Missense_Mutation 2 181925537 C T 24 100 BRCA TCGA-B6-A0RO P2RY1 SNP Missense_Mutation 3 152554206 G A 37 82 BRCA TCGA-B6-A0RO PIK3CA SNP Missense_Mutation 3 178936074 C G 24 98 BRCA TCGA-B6-A0RO PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-B6-A0RO LGI2 INS Frame_Shift_Ins 4 25005661 - A 17 66 BRCA TCGA-B6-A0RO LGI2 SNP Silent 4 25005663 G A 33 56 BRCA TCGA-B6-A0RO LSM11 SNP Missense_Mutation 5 157178496 T C 55 94 BRCA TCGA-B6-A0RO RARS SNP Missense_Mutation 5 167927622 G C 35 49 BRCA TCGA-B6-A0RO HGC6.3 SNP Silent 6 168377261 T C 60 40 BRCA TCGA-B6-A0RO TMEM151B SNP Nonsense_Mutation 6 44241139 C T 25 83 BRCA TCGA-B6-A0RO RHAG SNP Splice_site 6 49580246 A G 2 91 BRCA TCGA-B6-A0RO GRHL2 SNP Nonsense_Mutation 8 102570699 C T 23 67 BRCA TCGA-B6-A0RO HSDL2 SNP Missense_Mutation 9 115167969 G C 46 52 BRCA TCGA-B6-A0RO CNTLN SNP Splice_Site 9 17486986 G A 35 88 BRCA TCGA-B6-A0RP HDAC1 SNP Splice_Site 1 32768220 A G 7 79 BRCA TCGA-B6-A0RP HEATR8 SNP Missense_Mutation 1 55119090 G T 44 69 BRCA TCGA-B6-A0RP PRKRIR SNP Missense_Mutation 11 76062566 G A 46 97 BRCA TCGA-B6-A0RP EPS8 SNP Missense_Mutation 12 15822744 C A 17 58 BRCA TCGA-B6-A0RP PIP4K2C SNP Missense_Mutation 12 57989795 A G 2 74 BRCA TCGA-B6-A0RP ZFC3H1 SNP Missense_Mutation 12 72008334 T A 60 70 BRCA TCGA-B6-A0RP FREM2 SNP Missense_Mutation 13 39435627 C T 27 84 BRCA TCGA-B6-A0RP GOLGA8DP SNP Splice_Site 15 22709627 C T 18 66 BRCA TCGA-B6-A0RP CES1 SNP Missense_Mutation 16 55857523 C A 25 74 BRCA TCGA-B6-A0RP SRCIN1 SNP Missense_Mutation 17 36719585 G C 40 54 BRCA TCGA-B6-A0RP TNNI3 SNP Missense_Mutation 19 55666131 T C 64 72 BRCA TCGA-B6-A0RP MUC16 SNP Missense_Mutation 19 9056515 C T 24 52 BRCA TCGA-B6-A0RP TTN SNP Missense_Mutation 2 179435537 G A 41 100 BRCA TCGA-B6-A0RP CASP8 SNP Nonsense_Mutation 2 202141634 G T 41 53 BRCA TCGA-B6-A0RP PTK6 SNP Silent 20 62162156 G A 37 29 BRCA TCGA-B6-A0RP KCND1 SNP Silent 23 48823411 C T 17 43 BRCA TCGA-B6-A0RP COL6A5 SNP Silent 3 130159662 G A 39 43 BRCA TCGA-B6-A0RP PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA TCGA-B6-A0RP ACOX3 SNP Missense_Mutation 4 8401327 T A 50 53 BRCA TCGA-B6-A0RP GALNTL5 SNP Missense_Mutation 7 151716786 G A 38 53 BRCA TCGA-B6-A0RP MLL3 SNP Missense_Mutation 7 151845739 C A 30 100 BRCA TCGA-B6-A0RP POLD2 SNP Silent 7 44155818 C T 27 31 BRCA TCGA-B6-A0RP NACAD SNP Missense_Mutation 7 45123761 C T 26 27 BRCA TCGA-B6-A0RP C9orf84 SNP Silent 9 114518627 T C 64 57 BRCA TCGA-B6-A0RP DOCK8 SNP Missense_Mutation 9 377199 G T 38 100 BRCA TCGA-B6-A0RQ OBSCN SNP Missense_Mutation 1 228559663 C T 22 44 BRCA TCGA-B6-A0RQ DEPDC1 DEL Frame_Shift_Del 1 68954121 T - 52 46 BRCA TCGA-B6-A0RQ MGMT SNP Silent 10 131565093 C T 27 50 BRCA TCGA-B6-A0RQ TAGLN SNP Silent 11 117075033 C A 23 46 BRCA TCGA-B6-A0RQ MYH7 SNP Missense_Mutation 14 23899017 G A 38 51 BRCA TCGA-B6-A0RQ TSC2 SNP Missense_Mutation 16 2134569 C G 30 56 BRCA TCGA-B6-A0RQ FLYWCH1 SNP Missense_Mutation 16 2983810 T G 59 66 BRCA TCGA-B6-A0RQ CDH1 SNP Nonsense_Mutation 16 68772218 C T 21 53 BRCA TCGA-B6-A0RQ PITPNM3 SNP Silent 17 6380354 G A 33 50 BRCA TCGA-B6-A0RQ KIR3DL2 SNP Missense_Mutation 19 55363677 C T 19 41 BRCA TCGA-B6-A0RQ KCNF1 SNP Silent 2 11053551 G A 47 54 BRCA TCGA-B6-A0RQ PPP1R16B SNP Missense_Mutation 20 37546989 G A 40 41 BRCA TCGA-B6-A0RQ PIK3CA SNP Missense_Mutation 3 178936083 A G 9 90 BRCA TCGA-B6-A0RQ CCNI2 SNP Missense_Mutation 5 132084048 T C 55 46 BRCA TCGA-B6-A0RQ GRID2IP SNP Silent 7 6545509 C A 29 59 BRCA TCGA-B6-A0RQ GLI4 SNP Missense_Mutation 8 144356931 A G 10 59 BRCA TCGA-B6-A0RQ PNMA2 SNP Missense_Mutation 8 26365666 C G 32 72 BRCA TCGA-B6-A0RS WDR47 DEL In_Frame_Del 1 109553945 ATCCAA - 12 73 BRCA TCGA-B6-A0RS DENND2D SNP Missense_Mutation 1 111730905 C T 23 65 BRCA TCGA-B6-A0RS OR6P1 SNP Missense_Mutation 1 158532707 T A 57 58 BRCA TCGA-B6-A0RS OR10J5 SNP Missense_Mutation 1 159505433 C T 27 79 BRCA TCGA-B6-A0RS F5 SNP Splice_Site 1 169513747 C T 28 96 BRCA TCGA-B6-A0RS KCNT2 SNP Missense_Mutation 1 196288674 T C 51 81 BRCA TCGA-B6-A0RS USH2A SNP Missense_Mutation 1 216052394 T C 49 71 BRCA TCGA-B6-A0RS C1orf65 SNP Missense_Mutation 1 223567522 G A 46 42 BRCA TCGA-B6-A0RS ZNF678 SNP Missense_Mutation 1 227842863 G C 36 43 BRCA TCGA-B6-A0RS OR2T5 SNP Missense_Mutation 1 248651971 C T 30 75 BRCA TCGA-B6-A0RS MUTYH SNP Missense_Mutation 1 45797841 C G 32 49 BRCA TCGA-B6-A0RS MAST2 SNP Missense_Mutation 1 46500659 G A 41 99 BRCA TCGA-B6-A0RS ENSG00000231472 SNP Silent 10 1382469 C T 23 61 BRCA TCGA-B6-A0RS JMJD1C SNP Missense_Mutation 10 64966616 C A 29 98 BRCA TCGA-B6-A0RS PRKCQ SNP Missense_Mutation 10 6533736 T A 50 54 BRCA TCGA-B6-A0RS IFIT5 SNP Missense_Mutation 10 91177249 G A 41 79 BRCA TCGA-B6-A0RS SPA17 SNP Missense_Mutation 11 124564266 G A 41 76 BRCA TCGA-B6-A0RS LIN7C SNP Silent 11 27528282 T C 60 52 BRCA TCGA-B6-A0RS CKAP5 SNP Missense_Mutation 11 46780928 C A 30 100 BRCA TCGA-B6-A0RS OR5M1 SNP Missense_Mutation 11 56380529 C A 17 47 BRCA TCGA-B6-A0RS DTX4 SNP Missense_Mutation 11 58949460 C T 23 73 BRCA TCGA-B6-A0RS TYR SNP Silent 11 88911202 T A 53 49 BRCA TCGA-B6-A0RS TMEM132C SNP Missense_Mutation 12 129028546 G A 40 82 BRCA TCGA-B6-A0RS ENDOU SNP Missense_Mutation 12 48119169 C T 26 56 BRCA TCGA-B6-A0RS CHD4 SNP Missense_Mutation 12 6710131 G C 45 69 BRCA TCGA-B6-A0RS USP12 DEL Frame_Shift_Del 13 27669781 TGAA - 55 93 BRCA TCGA-B6-A0RS MOK SNP Missense_Mutation 14 102699023 A T 1 86 BRCA TCGA-B6-A0RS RNASE8 SNP Missense_Mutation 14 21526511 G T 48 46 BRCA TCGA-B6-A0RS CMA1 SNP Silent 14 24977412 G T 33 58 BRCA TCGA-B6-A0RS LRFN5 SNP Missense_Mutation 14 42356176 T G 51 49 BRCA TCGA-B6-A0RS TC2N SNP Missense_Mutation 14 92278777 A T 4 69 BRCA TCGA-B6-A0RS LOC646396 SNP Missense_Mutation 15 22570879 T G 52 66 BRCA TCGA-B6-A0RS GATM SNP Missense_Mutation 15 45658597 C A 30 93 BRCA TCGA-B6-A0RS C15orf21 SNP Missense_Mutation 15 45848153 C T 20 60 BRCA TCGA-B6-A0RS TICRR SNP Missense_Mutation 15 90167796 G A 33 50 BRCA TCGA-B6-A0RS CACNA1H SNP Silent 16 1265590 C A 22 52 BRCA TCGA-B6-A0RS SRCAP SNP Missense_Mutation 16 30747874 G A 45 97 BRCA TCGA-B6-A0RS ZNF668 SNP Silent 16 31072677 G C 35 51 BRCA TCGA-B6-A0RS PRSS36 SNP Silent 16 31157263 G T 41 48 BRCA TCGA-B6-A0RS LOC100131347 SNP Missense_Mutation 17 37214251 C T 21 40 BRCA TCGA-B6-A0RS TP53 SNP Missense_Mutation 17 7577121 G A 38 65 BRCA TCGA-B6-A0RS ANKRD30B SNP Silent 18 14799123 C T 32 43 BRCA TCGA-B6-A0RS METTL4 SNP Missense_Mutation 18 2554851 G A 48 74 BRCA TCGA-B6-A0RS GRP SNP Missense_Mutation 18 56892747 A G 6 58 BRCA TCGA-B6-A0RS UPF1 SNP Missense_Mutation 19 18965806 C T 27 75 BRCA TCGA-B6-A0RS NCAN SNP Missense_Mutation 19 19339079 G C 36 59 BRCA TCGA-B6-A0RS PPAP2C SNP Missense_Mutation 19 287582 G A 43 82 BRCA TCGA-B6-A0RS TDRD12 SNP Nonsense_Mutation 19 33222735 C A 17 52 BRCA TCGA-B6-A0RS FFAR3 SNP Missense_Mutation 19 35849810 C G 18 46 BRCA TCGA-B6-A0RS SLC17A7 SNP Splice_Site 19 49937858 C T 18 94 BRCA TCGA-B6-A0RS SIGLEC12 SNP Missense_Mutation 19 52001503 G C 35 48 BRCA TCGA-B6-A0RS VN1R4 SNP Silent 19 53770619 G T 33 52 BRCA TCGA-B6-A0RS MUC16 SNP Missense_Mutation 19 9013851 G T 43 49 BRCA TCGA-B6-A0RS MUC16 SNP Missense_Mutation 19 9085304 T A 59 54 BRCA TCGA-B6-A0RS XIRP2 SNP Missense_Mutation 2 167760306 G A 38 75 BRCA TCGA-B6-A0RS LRP2 SNP Missense_Mutation 2 170007474 T G 57 93 BRCA TCGA-B6-A0RS ATF2 SNP Missense_Mutation 2 175994892 G C 33 71 BRCA TCGA-B6-A0RS RESP18 SNP Missense_Mutation 2 220193896 T C 63 54 BRCA TCGA-B6-A0RS INPP5D SNP Missense_Mutation 2 234078001 G A 35 96 BRCA TCGA-B6-A0RS USP40 SNP Missense_Mutation 2 234442402 T C 49 42 BRCA TCGA-B6-A0RS C2orf73 SNP Missense_Mutation 2 54562066 G C 35 52 BRCA TCGA-B6-A0RS TET3 SNP Missense_Mutation 2 74275023 C T 21 69 BRCA TCGA-B6-A0RS SRC SNP Silent 20 36028528 C T 19 46 BRCA TCGA-B6-A0RS SEMG1 SNP Missense_Mutation 20 43836150 T C 57 48 BRCA TCGA-B6-A0RS SLC9A8 SNP Missense_Mutation 20 48491356 G C 48 100 BRCA TCGA-B6-A0RS SLCO4A1 SNP Missense_Mutation 20 61296348 A T 11 77 BRCA TCGA-B6-A0RS SYN3 DEL Splice_Site 22 32914022 GCACTTACTTGAGATGCGGATGGGGTG - 34 64 BRCA TCGA-B6-A0RS NOL12 SNP Missense_Mutation 22 38086719 A T 7 45 BRCA TCGA-B6-A0RS MEI1 SNP Missense_Mutation 22 42154480 G A 38 57 BRCA TCGA-B6-A0RS ZMYM3 SNP Missense_Mutation 23 70472680 C A 28 50 BRCA TCGA-B6-A0RS ITGB1BP2 SNP Missense_Mutation 23 70523323 T A 55 62 BRCA TCGA-B6-A0RS MYLK SNP Missense_Mutation 3 123427632 C A 20 92 BRCA TCGA-B6-A0RS C3orf72 SNP Silent 3 138669384 T A 53 37 BRCA TCGA-B6-A0RS TRPC1 SNP Missense_Mutation 3 142511768 T C 56 92 BRCA TCGA-B6-A0RS MME SNP Silent 3 154858054 T C 49 44 BRCA TCGA-B6-A0RS CRYGS SNP Silent 3 186256500 G T 42 58 BRCA TCGA-B6-A0RS NEK10 SNP Missense_Mutation 3 27333012 G C 34 85 BRCA TCGA-B6-A0RS VILL SNP Missense_Mutation 3 38043241 G A 45 68 BRCA TCGA-B6-A0RS VIPR1 SNP Silent 3 42555267 G A 35 52 BRCA TCGA-B6-A0RS WDR6 DEL Frame_Shift_Del 3 49050218 CAAGGTTGTCCCCATCAACACTCCAACTG - 29 52 BRCA TCGA-B6-A0RS PSMD6 SNP Missense_Mutation 3 64004628 T G 63 94 BRCA TCGA-B6-A0RS KIAA1109 SNP Missense_Mutation 4 123151131 G A 44 98 BRCA TCGA-B6-A0RS IL2 SNP Missense_Mutation 4 123374977 T C 62 47 BRCA TCGA-B6-A0RS TTC29 SNP Missense_Mutation 4 147796034 C A 29 73 BRCA TCGA-B6-A0RS CSN3 SNP Silent 4 71114726 T C 51 44 BRCA TCGA-B6-A0RS SLC35A4 SNP Missense_Mutation 5 139947124 G C 47 95 BRCA TCGA-B6-A0RS PCDH1 SNP Missense_Mutation 5 141248193 G A 38 60 BRCA TCGA-B6-A0RS SLC36A3 SNP Missense_Mutation 5 150656967 C A 18 46 BRCA TCGA-B6-A0RS CMYA5 SNP Missense_Mutation 5 79025524 G T 36 48 BRCA TCGA-B6-A0RS OPRM1 SNP Silent 6 154414482 A T 10 51 BRCA TCGA-B6-A0RS TFB1M SNP Nonsense_Mutation 6 155606384 G A 48 99 BRCA TCGA-B6-A0RS HSPA1B SNP Missense_Mutation 6 31795732 C T 26 93 BRCA TCGA-B6-A0RS TEAD3 SNP Missense_Mutation 6 35446080 G C 35 70 BRCA TCGA-B6-A0RS DSP SNP Missense_Mutation 6 7585693 C A 19 100 BRCA TCGA-B6-A0RS SLC26A4 SNP Silent 7 107334868 T C 55 58 BRCA TCGA-B6-A0RS ATP6V0A4 SNP Missense_Mutation 7 138437561 G C 45 88 BRCA TCGA-B6-A0RS GSTK1 SNP Missense_Mutation 7 142961763 G C 45 49 BRCA TCGA-B6-A0RS FAM115C SNP Missense_Mutation 7 143400212 T A 59 69 BRCA TCGA-B6-A0RS GLI3 SNP Silent 7 42063187 G T 43 50 BRCA TCGA-B6-A0RS ZNF679 SNP Missense_Mutation 7 63709524 G C 34 46 BRCA TCGA-B6-A0RS WBSCR22 SNP Missense_Mutation 7 73101334 G T 42 89 BRCA TCGA-B6-A0RS ZP3 SNP Missense_Mutation 7 76062801 G A 45 56 BRCA TCGA-B6-A0RS PPP1R9A SNP Missense_Mutation 7 94540341 T C 54 49 BRCA TCGA-B6-A0RS TRIB1 SNP Missense_Mutation 8 126445622 A C 5 90 BRCA TCGA-B6-A0RS VCPIP1 SNP Missense_Mutation 8 67578127 A C 12 93 BRCA TCGA-B6-A0RS VCPIP1 SNP Silent 8 67579071 G A 44 53 BRCA TCGA-B6-A0RS RIPK2 SNP Silent 8 90782089 C T 32 58 BRCA TCGA-B6-A0RS ACTL7B SNP Silent 9 111617947 G A 40 48 BRCA TCGA-B6-A0RS AKNA SNP Missense_Mutation 9 117124808 G C 41 57 BRCA TCGA-B6-A0RS KIAA2026 SNP Missense_Mutation 9 5920883 C T 23 68 BRCA TCGA-B6-A0RS PTPRD SNP Silent 9 8528724 C T 21 100 BRCA TCGA-B6-A0RT GJA5 SNP Missense_Mutation 1 147231066 C G 26 87 BRCA TCGA-B6-A0RT WNT9A SNP Missense_Mutation 1 228113112 C A 28 60 BRCA TCGA-B6-A0RT TARBP1 SNP Splice_Site 1 234565071 C A 28 86 BRCA TCGA-B6-A0RT TMEM57 SNP Missense_Mutation 1 25785067 G C 33 96 BRCA TCGA-B6-A0RT ANO9 SNP Missense_Mutation 11 430133 C G 31 72 BRCA TCGA-B6-A0RT GYLTL1B SNP Missense_Mutation 11 45945056 T G 49 51 BRCA TCGA-B6-A0RT C11orf85 SNP Missense_Mutation 11 64715283 T C 52 31 BRCA TCGA-B6-A0RT COL4A2 SNP Missense_Mutation 13 111132707 G C 45 36 BRCA TCGA-B6-A0RT C13orf35 SNP Missense_Mutation 13 113333710 C T 27 43 BRCA TCGA-B6-A0RT PALB2 SNP Silent 16 23637710 T A 55 51 BRCA TCGA-B6-A0RT WWP2 SNP Missense_Mutation 16 69965416 A C 4 79 BRCA TCGA-B6-A0RT UNC45B SNP Silent 17 33501311 T A 59 29 BRCA TCGA-B6-A0RT KCNH6 DEL Frame_Shift_Del 17 61619707 G - 39 98 BRCA TCGA-B6-A0RT NLRP13 SNP Nonsense_Mutation 19 56423854 G C 40 38 BRCA TCGA-B6-A0RT HSPA12B SNP Missense_Mutation 20 3721471 C T 23 65 BRCA TCGA-B6-A0RT DCX SNP Silent 23 110644257 G A 39 33 BRCA TCGA-B6-A0RT MAGEA8 SNP Missense_Mutation 23 149013768 T C 58 48 BRCA TCGA-B6-A0RT FATE1 SNP Missense_Mutation 23 150890415 G C 33 60 BRCA TCGA-B6-A0RT MXRA5 SNP Missense_Mutation 23 3228364 C T 24 67 BRCA TCGA-B6-A0RT GPR173 SNP Silent 23 53106370 C T 29 71 BRCA TCGA-B6-A0RT SCN11A SNP Missense_Mutation 3 38888190 C G 29 74 BRCA TCGA-B6-A0RT TBL2 SNP Missense_Mutation 7 72992858 C G 30 65 BRCA TCGA-B6-A0RU CACNA1E SNP Missense_Mutation 1 181688931 A C 10 66 BRCA TCGA-B6-A0RU MTR SNP Missense_Mutation 1 237023140 G C 42 56 BRCA TCGA-B6-A0RU TTC4 SNP Missense_Mutation 1 55188450 G C 35 95 BRCA TCGA-B6-A0RU LOC100292054 SNP Silent 1 798026 C T 23 54 BRCA TCGA-B6-A0RU CNNM2 SNP Missense_Mutation 10 104816543 T C 49 76 BRCA TCGA-B6-A0RU TACC2 SNP Missense_Mutation 10 123988915 C T 29 63 BRCA TCGA-B6-A0RU CD3E SNP Missense_Mutation 11 118185202 A G 10 70 BRCA TCGA-B6-A0RU PATE4 SNP Missense_Mutation 11 125708299 A G 7 57 BRCA TCGA-B6-A0RU CD248 SNP Nonsense_Mutation 11 66082629 G A 45 60 BRCA TCGA-B6-A0RU PMEL DEL Frame_Shift_Del 12 56349080 C - 18 59 BRCA TCGA-B6-A0RU LOC729501 SNP Silent 13 19042402 C T 28 51 BRCA TCGA-B6-A0RU ARHGAP5 SNP Missense_Mutation 14 32560757 T A 57 69 BRCA TCGA-B6-A0RU ABCC6 SNP Missense_Mutation 16 16315440 G C 44 53 BRCA TCGA-B6-A0RU ACSF2 DEL Frame_Shift_Del 17 48548486 CT - 24 59 BRCA TCGA-B6-A0RU TEX14 SNP Missense_Mutation 17 56679891 T A 52 75 BRCA TCGA-B6-A0RU TP53 SNP Nonsense_Mutation 17 7578263 G A 39 67 BRCA TCGA-B6-A0RU DNAH17 SNP Missense_Mutation 17 76490785 A C 3 88 BRCA TCGA-B6-A0RU ZNF781 SNP Nonsense_Mutation 19 38160608 G A 48 26 BRCA TCGA-B6-A0RU CLASP1 DEL In_Frame_Del 2 122106150 CGA - 31 97 BRCA TCGA-B6-A0RU C20orf26 SNP Missense_Mutation 20 20269354 C A 20 50 BRCA TCGA-B6-A0RU IGSF5 DEL Frame_Shift_Del 21 41137704 C - 26 54 BRCA TCGA-B6-A0RU HIRA SNP Silent 22 19349295 C T 26 46 BRCA TCGA-B6-A0RU MORC2 SNP Missense_Mutation 22 31336819 T C 57 90 BRCA TCGA-B6-A0RU EIF4ENIF1 SNP Silent 22 31867874 G C 43 49 BRCA TCGA-B6-A0RU CSNK1E SNP Missense_Mutation 22 38694855 C T 27 99 BRCA TCGA-B6-A0RU TSC22D3 SNP Silent 23 106959960 G A 33 56 BRCA TCGA-B6-A0RU SAGE1 SNP Silent 23 134986704 T C 56 57 BRCA TCGA-B6-A0RU BMX SNP Missense_Mutation 23 15568080 C T 31 64 BRCA TCGA-B6-A0RU POLQ SNP Missense_Mutation 3 121158894 C A 30 72 BRCA TCGA-B6-A0RU HLTF DEL In_Frame_Del 3 148793804 GTT - 40 58 BRCA TCGA-B6-A0RU CELSR3 SNP Missense_Mutation 3 48697354 C T 27 98 BRCA TCGA-B6-A0RU ROBO2 SNP Silent 3 77612343 C T 20 64 BRCA TCGA-B6-A0RU C4orf21 SNP Missense_Mutation 4 113539671 A T 16 40 BRCA TCGA-B6-A0RU PCDHA10 SNP Silent 5 140235801 G A 39 40 BRCA TCGA-B6-A0RU FABP6 SNP Missense_Mutation 5 159656619 A C 8 51 BRCA TCGA-B6-A0RU ITGA1 SNP Missense_Mutation 5 52211349 A G 6 90 BRCA TCGA-B6-A0RU UTRN SNP Nonsense_Mutation 6 144768443 C T 31 78 BRCA TCGA-B6-A0RU LOC100290372 DNP Missense_Mutation 6 4399612 TG GC 63 59 BRCA TCGA-B6-A0RU ACTL6B DEL Frame_Shift_Del 7 100246265 C - 26 96 BRCA TCGA-B6-A0RU MUC17 SNP Missense_Mutation 7 100686212 C T 30 40 BRCA TCGA-B6-A0RU COG5 SNP Missense_Mutation 7 106877126 T A 49 49 BRCA TCGA-B6-A0RU SLC25A13 DEL Frame_Shift_Del 7 95751180 C - 30 100 BRCA TCGA-B6-A0RU UNC5D SNP Missense_Mutation 8 35608151 C A 22 74 BRCA TCGA-B6-A0RU CNBD1 SNP Missense_Mutation 8 88249321 T A 53 42 BRCA TCGA-B6-A0RU PALM2 SNP Missense_Mutation 9 112705127 G A 40 49 BRCA TCGA-B6-A0RU MED27 DEL Frame_Shift_Del 9 134952894 CCAGGCTTAACAGC - 30 99 BRCA TCGA-B6-A0RV HIPK1 SNP Missense_Mutation 1 114483438 C G 32 100 BRCA TCGA-B6-A0RV MIB2 SNP Missense_Mutation 1 1562340 G C 46 71 BRCA TCGA-B6-A0RV IKBKE SNP Silent 1 206658614 G A 33 77 BRCA TCGA-B6-A0RV MRPS15 SNP Missense_Mutation 1 36921913 G A 39 62 BRCA TCGA-B6-A0RV DNALI1 DEL Frame_Shift_Del 1 38024964 G - 35 60 BRCA TCGA-B6-A0RV FRMPD2 SNP Silent 10 49379163 G C 45 49 BRCA TCGA-B6-A0RV CDK1 SNP Silent 10 62553685 G A 45 62 BRCA TCGA-B6-A0RV ATM SNP Splice_Site 11 108186737 G A 33 92 BRCA TCGA-B6-A0RV FAR1 SNP Silent 11 13721953 C T 29 44 BRCA TCGA-B6-A0RV STK33 SNP Silent 11 8435219 C T 29 52 BRCA TCGA-B6-A0RV SWAP70 SNP Missense_Mutation 11 9735179 C T 29 75 BRCA TCGA-B6-A0RV ANAPC7 SNP Missense_Mutation 12 110832986 C T 29 96 BRCA TCGA-B6-A0RV OAS3 SNP Silent 12 113386695 G A 47 57 BRCA TCGA-B6-A0RV ARID2 SNP Nonsense_Mutation 12 46211464 C T 29 100 BRCA TCGA-B6-A0RV USP12 SNP Splice_site 13 27664021 G A 40 63 BRCA TCGA-B6-A0RV SALL2 SNP Missense_Mutation 14 21992915 G A 37 65 BRCA TCGA-B6-A0RV C14orf38 SNP Missense_Mutation 14 60031832 T C 54 52 BRCA TCGA-B6-A0RV GOLGA9P SNP Silent 15 23261911 G A 33 67 BRCA TCGA-B6-A0RV NDNL2 SNP Silent 15 29561355 G A 45 51 BRCA TCGA-B6-A0RV USP8 SNP Missense_Mutation 15 50791185 A T 8 90 BRCA TCGA-B6-A0RV SEPT1 SNP Missense_Mutation 16 30393617 C G 29 99 BRCA TCGA-B6-A0RV ABCC12 SNP Missense_Mutation 16 48149418 C T 19 75 BRCA TCGA-B6-A0RV MAP2K4 SNP Splice_Site 17 12043202 G A 44 95 BRCA TCGA-B6-A0RV SLFN12L SNP Missense_Mutation 17 33807200 C T 19 53 BRCA TCGA-B6-A0RV CACNA1G SNP Silent 17 48681624 C T 31 51 BRCA TCGA-B6-A0RV ALOX12 SNP Missense_Mutation 17 6902773 G C 33 51 BRCA TCGA-B6-A0RV ELP5 SNP Missense_Mutation 17 7158001 G C 33 44 BRCA TCGA-B6-A0RV SERPINB3 SNP Missense_Mutation 18 61323001 A T 12 31 BRCA TCGA-B6-A0RV ZNF610 SNP Missense_Mutation 19 52856956 G A 40 65 BRCA TCGA-B6-A0RV ZNF835 SNP Silent 19 57175874 G A 41 70 BRCA TCGA-B6-A0RV RRM2 SNP Silent 2 10269010 A G 2 52 BRCA TCGA-B6-A0RV RGPD3 SNP Missense_Mutation 2 107042506 G A 44 81 BRCA TCGA-B6-A0RV NCKAP5 SNP Silent 2 133541462 C T 29 57 BRCA TCGA-B6-A0RV NEB SNP Missense_Mutation 2 152406191 G C 45 52 BRCA TCGA-B6-A0RV IFIH1 SNP Missense_Mutation 2 163128799 C G 32 65 BRCA TCGA-B6-A0RV CST5 SNP Missense_Mutation 20 23860130 C T 30 52 BRCA TCGA-B6-A0RV TH1L SNP Missense_Mutation 20 57564035 G A 45 96 BRCA TCGA-B6-A0RV KCNQ2 SNP Missense_Mutation 20 62078142 G C 45 66 BRCA TCGA-B6-A0RV ZGPAT SNP Silent 20 62364607 G T 46 53 BRCA TCGA-B6-A0RV SYNJ1 SNP Missense_Mutation 21 34003498 G A 45 56 BRCA TCGA-B6-A0RV NHSL2 SNP Silent 23 71358727 C T 31 36 BRCA TCGA-B6-A0RV CACNA1D SNP Silent 3 53839094 C T 32 65 BRCA TCGA-B6-A0RV JAGN1 SNP Nonsense_Mutation 3 9934708 C T 29 66 BRCA TCGA-B6-A0RV ADD1 SNP Silent 4 2930220 G A 45 66 BRCA TCGA-B6-A0RV GRIA1 SNP Missense_Mutation 5 153065794 G C 45 94 BRCA TCGA-B6-A0RV PDZD2 DEL Splice_Site 5 32101067 TAAG - 49 51 BRCA TCGA-B6-A0RV EXOC3 SNP Silent 5 446329 G A 33 68 BRCA TCGA-B6-A0RV ADCY2 SNP Silent 5 7802447 C G 30 52 BRCA TCGA-B6-A0RV GMDS SNP Missense_Mutation 6 2124947 C G 29 96 BRCA TCGA-B6-A0RV ITPR3 SNP Missense_Mutation 6 33647708 C T 31 98 BRCA TCGA-B6-A0RV MUC12 SNP Silent 7 100660866 G A 45 51 BRCA TCGA-B6-A0RV C7orf66 SNP Silent 7 108524578 C G 29 46 BRCA TCGA-B6-A0RV VPS41 SNP Missense_Mutation 7 38796567 C G 32 57 BRCA TCGA-B6-A0RV AKAP9 SNP Missense_Mutation 7 91712715 C G 32 61 BRCA TCGA-B6-A0RV VPS13B SNP Missense_Mutation 8 100729551 G C 33 71 BRCA TCGA-B6-A0RV INTS8 SNP Missense_Mutation 8 95884207 T C 52 69 BRCA TCGA-B6-A0RV OR1N1 SNP Silent 9 125289222 C T 19 11 BRCA TCGA-B6-A0RV ABL1 SNP Splice_Site 9 133750254 G C 33 84 BRCA TCGA-B6-A0RV FAM75C1 SNP Missense_Mutation 9 90535186 G C 45 59 BRCA TCGA-B6-A0WS CD1D SNP Silent 1 158150918 C T 32 36 BRCA TCGA-B6-A0WS IKBKE SNP Silent 1 206648210 C T 27 59 BRCA TCGA-B6-A0WS GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-B6-A0WS OR51V1 SNP Missense_Mutation 11 5221911 A G 8 48 BRCA TCGA-B6-A0WS WDR74 SNP Nonsense_Mutation 11 62603453 T A 63 54 BRCA TCGA-B6-A0WS KCTD10 SNP Missense_Mutation 12 109895450 T G 64 88 BRCA TCGA-B6-A0WS ATAD5 SNP Silent 17 29220890 T C 57 58 BRCA TCGA-B6-A0WS GRN SNP Missense_Mutation 17 42427892 C T 19 51 BRCA TCGA-B6-A0WS TANC2 SNP Splice_site 17 61489359 G A 44 89 BRCA TCGA-B6-A0WS CHAF1A SNP Silent 19 4428843 C T 23 35 BRCA TCGA-B6-A0WS PDE9A SNP Splice_site 21 44106372 G A 39 75 BRCA TCGA-B6-A0WS ZDHHC3 SNP Missense_Mutation 3 44970893 G T 33 88 BRCA TCGA-B6-A0WS CCR2 SNP Silent 3 46399915 C T 25 58 BRCA TCGA-B6-A0WS LRBA DEL Frame_Shift_Del 4 151682938 C - 30 80 BRCA TCGA-B6-A0WS FSTL5 SNP Missense_Mutation 4 162577518 T C 63 61 BRCA TCGA-B6-A0WS ANKH SNP Missense_Mutation 5 14716838 A T 12 91 BRCA TCGA-B6-A0WS CAPN11 SNP Missense_Mutation 6 44150736 G T 38 77 BRCA TCGA-B6-A0WS MCM4 SNP Silent 8 48882407 G A 45 51 BRCA TCGA-B6-A0WS RABEPK SNP Silent 9 127994885 A G 4 48 BRCA TCGA-B6-A0WT C4BPB SNP Silent 1 207262894 G A 40 41 BRCA TCGA-B6-A0WT ITGB3BP SNP Missense_Mutation 1 63955841 A T 9 76 BRCA TCGA-B6-A0WT PTEN SNP Missense_Mutation 10 89692905 G A 37 96 BRCA TCGA-B6-A0WT LRP4 SNP Silent 11 46916348 G A 37 55 BRCA TCGA-B6-A0WT OR5W2 SNP Silent 11 55681318 C T 23 45 BRCA TCGA-B6-A0WT ALG10 SNP Nonsense_Mutation 12 34177061 T G 52 53 BRCA TCGA-B6-A0WT RHEBL1 SNP Splice_Site 12 49459216 T C 55 63 BRCA TCGA-B6-A0WT ESR2 SNP Missense_Mutation 14 64694310 G C 36 48 BRCA TCGA-B6-A0WT ENTPD5 SNP Silent 14 74436746 A G 8 45 BRCA TCGA-B6-A0WT SLFN14 SNP Missense_Mutation 17 33884703 G A 38 56 BRCA TCGA-B6-A0WT EXOC7 SNP Missense_Mutation 17 74084953 G A 39 72 BRCA TCGA-B6-A0WT INSL3 SNP Missense_Mutation 19 17927802 G A 40 42 BRCA TCGA-B6-A0WT SUPT5H SNP Missense_Mutation 19 39949655 G A 33 95 BRCA TCGA-B6-A0WT GCC2 SNP Missense_Mutation 2 109099566 C A 29 88 BRCA TCGA-B6-A0WT SF3B1 SNP Missense_Mutation 2 198266834 T C 62 93 BRCA TCGA-B6-A0WT DLEC1 SNP Silent 3 38163187 G A 41 50 BRCA TCGA-B6-A0WT ITIH1 SNP Missense_Mutation 3 52813627 G A 39 46 BRCA TCGA-B6-A0WT IDUA SNP Missense_Mutation 4 995476 A C 2 87 BRCA TCGA-B6-A0WT APC SNP Silent 5 112177345 A G 7 41 BRCA TCGA-B6-A0WT N4BP3 SNP Missense_Mutation 5 177548592 C T 23 57 BRCA TCGA-B6-A0WT ARID1B DEL Frame_Shift_Del 6 157454190 T - 54 51 BRCA TCGA-B6-A0WT MAPK14 SNP Missense_Mutation 6 36063825 G T 33 96 BRCA TCGA-B6-A0WT IFRD1 SNP Missense_Mutation 7 112112289 A G 2 62 BRCA TCGA-B6-A0WT NSUN5 SNP Silent 7 72718330 A G 3 22 BRCA TCGA-B6-A0WT COL14A1 SNP Missense_Mutation 8 121282319 C T 30 99 BRCA TCGA-B6-A0WV VPS13D SNP Silent 1 12331106 A G 4 53 BRCA TCGA-B6-A0WV VSIG8 DEL In_Frame_Del 1 159827578 TGA - 55 41 BRCA TCGA-B6-A0WV OR5J2 SNP Missense_Mutation 11 55944758 C T 28 43 BRCA TCGA-B6-A0WV PIWIL4 SNP Missense_Mutation 11 94308183 C G 32 61 BRCA TCGA-B6-A0WV KLRC1 SNP Missense_Mutation 12 10600155 A G 8 38 BRCA TCGA-B6-A0WV TPCN1 SNP Missense_Mutation 12 113728784 A T 2 88 BRCA TCGA-B6-A0WV STK38L SNP Splice_site 12 27470270 C T 25 99 BRCA TCGA-B6-A0WV PTPRB SNP Silent 12 70925884 T C 56 50 BRCA TCGA-B6-A0WV NALCN SNP Missense_Mutation 13 101759935 C G 32 100 BRCA TCGA-B6-A0WV SMAD9 SNP Missense_Mutation 13 37453778 C T 27 99 BRCA TCGA-B6-A0WV ERO1L SNP Missense_Mutation 14 53145184 C T 20 69 BRCA TCGA-B6-A0WV GSPT1 INS Splice_Site 16 11988808 - A 61 65 BRCA TCGA-B6-A0WV HELZ SNP Silent 17 65145995 A C 6 64 BRCA TCGA-B6-A0WV KCNJ16 SNP Silent 17 68128759 G A 33 66 BRCA TCGA-B6-A0WV CCDC159 INS Frame_Shift_Ins 19 11462767 - A 45 52 BRCA TCGA-B6-A0WV HADHA SNP Silent 2 26432729 T C 52 61 BRCA TCGA-B6-A0WV VPS54 SNP Missense_Mutation 2 64148420 T C 64 67 BRCA TCGA-B6-A0WV KCNJ15 SNP Missense_Mutation 21 39671581 G A 40 100 BRCA TCGA-B6-A0WV SERPIND1 SNP Missense_Mutation 22 21138494 C G 22 84 BRCA TCGA-B6-A0WV UBE2A DEL Frame_Shift_Del 23 118715485 C - 17 76 BRCA TCGA-B6-A0WV KCND1 DEL In_Frame_Del 23 48826456 AGA - 15 85 BRCA TCGA-B6-A0WV PHLDB2 SNP Missense_Mutation 3 111632538 A G 16 76 BRCA TCGA-B6-A0WV CCDC14 SNP Missense_Mutation 3 123667564 G A 42 62 BRCA TCGA-B6-A0WV FRG1 SNP Missense_Mutation 4 190876224 T G 56 81 BRCA TCGA-B6-A0WV HERC6 SNP Missense_Mutation 4 89304502 G A 41 64 BRCA TCGA-B6-A0WV GTPBP2 SNP Missense_Mutation 6 43593250 C G 20 75 BRCA TCGA-B6-A0WV ZNF292 DEL Frame_Shift_Del 6 87964453 TATC - 49 78 BRCA TCGA-B6-A0WV MLL3 INS Frame_Shift_Ins 7 151882645 - A 17 84 BRCA TCGA-B6-A0WV FAM78A SNP Missense_Mutation 9 134136463 T G 59 88 BRCA TCGA-B6-A0WV FAM166A DEL Frame_Shift_Del 9 140139614 CGTCT - 27 44 BRCA TCGA-B6-A0WW LCE1D DEL Frame_Shift_Del 1 152770312 CAAGTGCA - 21 60 BRCA TCGA-B6-A0WW CFHR4 SNP Silent 1 196887467 G A 37 47 BRCA TCGA-B6-A0WW LBR SNP Silent 1 225600340 A G 8 47 BRCA TCGA-B6-A0WW PTEN DEL Frame_Shift_Del 10 89653844 A - 9 86 BRCA TCGA-B6-A0WW PTEN SNP Nonsense_Mutation 10 89717771 A T 1 88 BRCA TCGA-B6-A0WW MUC5B SNP Missense_Mutation 11 1266823 G A 39 67 BRCA TCGA-B6-A0WW BRSK2 SNP Silent 11 1471018 C T 29 65 BRCA TCGA-B6-A0WW OR5L2 SNP Silent 11 55595297 G T 47 43 BRCA TCGA-B6-A0WW LHX5 SNP Missense_Mutation 12 113905144 C T 23 98 BRCA TCGA-B6-A0WW HCAR2 SNP Missense_Mutation 12 123187710 C G 23 96 BRCA TCGA-B6-A0WW SLCO1B3 SNP Splice_Site 12 21028168 G A 35 84 BRCA TCGA-B6-A0WW RAPGEF3 INS In_Frame_Ins 12 48144927 - CGGGCT 6 42 BRCA TCGA-B6-A0WW TPI1 SNP Nonsense_Mutation 12 6976710 C T 29 70 BRCA TCGA-B6-A0WW CDKL1 SNP Missense_Mutation 14 50862547 A T 12 75 BRCA TCGA-B6-A0WW GOLGA8G SNP Missense_Mutation 15 28771127 C G 29 69 BRCA TCGA-B6-A0WW GRAMD2 SNP Missense_Mutation 15 72456002 C T 19 49 BRCA TCGA-B6-A0WW HMG20A SNP Splice_site 15 77759649 G A 35 76 BRCA TCGA-B6-A0WW HS3ST2 SNP Silent 16 22926628 C T 27 49 BRCA TCGA-B6-A0WW MRC2 SNP Silent 17 60767630 C T 28 51 BRCA TCGA-B6-A0WW PIAS4 SNP Missense_Mutation 19 4037695 C T 23 50 BRCA TCGA-B6-A0WW ASIC4 SNP Missense_Mutation 2 220396583 A G 10 85 BRCA TCGA-B6-A0WW SNRPB INS Splice_site 20 2451335 - TG 8 67 BRCA TCGA-B6-A0WW SLC9A8 SNP Missense_Mutation 20 48466163 T G 63 51 BRCA TCGA-B6-A0WW RTEL1 SNP Silent 20 62322279 G C 39 39 BRCA TCGA-B6-A0WW ICOSLG SNP Missense_Mutation 21 45656914 C T 23 47 BRCA TCGA-B6-A0WW PLA2G3 SNP Missense_Mutation 22 31532969 A G 4 71 BRCA TCGA-B6-A0WW CSAG1 SNP Missense_Mutation 23 151908833 G C 41 43 BRCA TCGA-B6-A0WW BGN SNP Missense_Mutation 23 152771478 G A 38 56 BRCA TCGA-B6-A0WW KIAA1524 SNP Silent 3 108276094 C T 29 52 BRCA TCGA-B6-A0WW KIAA2018 SNP Missense_Mutation 3 113377798 C A 32 76 BRCA TCGA-B6-A0WW KALRN SNP Missense_Mutation 3 124017740 C A 29 100 BRCA TCGA-B6-A0WW PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-B6-A0WW SMARCC1 SNP Silent 3 47719705 A G 8 53 BRCA TCGA-B6-A0WW CASP6 SNP Nonsense_Mutation 4 110610590 G A 39 63 BRCA TCGA-B6-A0WW KCNN2 SNP Missense_Mutation 5 113698868 G C 34 86 BRCA TCGA-B6-A0WW HSPA9 SNP Missense_Mutation 5 137892185 G C 33 87 BRCA TCGA-B6-A0WW LOC100127922 SNP Missense_Mutation 5 173988914 G C 34 78 BRCA TCGA-B6-A0WW BRD9 SNP Missense_Mutation 5 878503 T C 57 87 BRCA TCGA-B6-A0WW PEX7 SNP Missense_Mutation 6 137147540 C G 31 84 BRCA TCGA-B6-A0WW C6orf118 SNP Missense_Mutation 6 165706931 G T 46 29 BRCA TCGA-B6-A0WW CSMD3 SNP Missense_Mutation 8 113237127 G A 45 100 BRCA TCGA-B6-A0WX HSD3B2 SNP Missense_Mutation 1 119964843 G A 39 51 BRCA TCGA-B6-A0WX VANGL2 SNP Silent 1 160389364 C T 19 44 BRCA TCGA-B6-A0WX CNR2 SNP Missense_Mutation 1 24201293 G A 40 51 BRCA TCGA-B6-A0WX RAB42 SNP Missense_Mutation 1 28920328 C A 23 50 BRCA TCGA-B6-A0WX BMS1 SNP Silent 10 43292558 A G 3 50 BRCA TCGA-B6-A0WX PHLDB1 SNP Missense_Mutation 11 118498282 A G 16 89 BRCA TCGA-B6-A0WX NRXN2 SNP Missense_Mutation 11 64427860 G A 42 91 BRCA TCGA-B6-A0WX SRGAP1 SNP Missense_Mutation 12 64536255 G C 37 100 BRCA TCGA-B6-A0WX CACNA1H SNP Missense_Mutation 16 1251909 C T 27 59 BRCA TCGA-B6-A0WX SF3B3 SNP Silent 16 70595640 G T 39 50 BRCA TCGA-B6-A0WX TP53 SNP Missense_Mutation 17 7577539 G A 39 60 BRCA TCGA-B6-A0WX TP53 SNP Nonsense_Mutation 17 7579346 A T 5 70 BRCA TCGA-B6-A0WX TNRC6C SNP Silent 17 76083023 G A 38 52 BRCA TCGA-B6-A0WX FAM210A SNP Silent 18 13682059 T C 59 54 BRCA TCGA-B6-A0WX TAF4B SNP Missense_Mutation 18 23847534 G T 42 48 BRCA TCGA-B6-A0WX B4GALT6 SNP Missense_Mutation 18 29210933 T G 52 50 BRCA TCGA-B6-A0WX ZNF43 SNP Missense_Mutation 19 21991152 C G 32 61 BRCA TCGA-B6-A0WX NCKAP5 SNP Nonsense_Mutation 2 133489539 G T 44 58 BRCA TCGA-B6-A0WX MTX2 SNP Missense_Mutation 2 177195335 C G 28 71 BRCA TCGA-B6-A0WX ZNF512 SNP Splice_Site 2 27825429 G T 44 92 BRCA TCGA-B6-A0WX EPAS1 SNP Silent 2 46605867 C T 31 49 BRCA TCGA-B6-A0WX EPAS1 SNP Missense_Mutation 2 46608750 T G 63 36 BRCA TCGA-B6-A0WX SOCS5 SNP Missense_Mutation 2 46985893 C A 32 76 BRCA TCGA-B6-A0WX BCL11A SNP Silent 2 60688385 G T 47 62 BRCA TCGA-B6-A0WX L3MBTL1 SNP Silent 20 42169425 T C 59 71 BRCA TCGA-B6-A0WX ZNRF3 SNP Missense_Mutation 22 29445235 C T 19 82 BRCA TCGA-B6-A0WX EFHC2 SNP Missense_Mutation 23 44101421 T G 58 55 BRCA TCGA-B6-A0WX ZC3H12B SNP Missense_Mutation 23 64722506 G T 42 91 BRCA TCGA-B6-A0WX TEX11 SNP Silent 23 69890251 G A 44 59 BRCA TCGA-B6-A0WX CDX4 SNP Silent 23 72667506 G A 39 32 BRCA TCGA-B6-A0WX BRK1 SNP Missense_Mutation 3 10157440 C T 23 71 BRCA TCGA-B6-A0WX IL17RE SNP Missense_Mutation 3 9948409 G C 40 54 BRCA TCGA-B6-A0WX SLC34A2 SNP Missense_Mutation 4 25664417 A G 10 88 BRCA TCGA-B6-A0WX WISP3 SNP Missense_Mutation 6 112382347 G A 44 64 BRCA TCGA-B6-A0WX ATXN1 SNP Silent 6 16327108 C T 25 66 BRCA TCGA-B6-A0WX DPCR1 SNP Missense_Mutation 6 30918798 A G 10 65 BRCA TCGA-B6-A0WX THSD7A SNP Missense_Mutation 7 11582644 C G 18 99 BRCA TCGA-B6-A0WX NRF1 SNP Silent 7 129350354 A G 8 52 BRCA TCGA-B6-A0WX FLJ43860 SNP Missense_Mutation 8 142446806 T A 59 40 BRCA TCGA-B6-A0WX NPDC1 DEL Frame_Shift_Del 9 139934483 G - 35 42 BRCA TCGA-B6-A0WY CHD1L INS Frame_Shift_Ins 1 146747774 - A 61 46 BRCA TCGA-B6-A0WY OR2T33 SNP Missense_Mutation 1 248436504 G C 34 53 BRCA TCGA-B6-A0WY NRAP SNP Nonsense_Mutation 10 115370292 G A 38 59 BRCA TCGA-B6-A0WY ENDOU SNP Missense_Mutation 12 48110712 G A 39 60 BRCA TCGA-B6-A0WY LOC643677 SNP Missense_Mutation 13 103395336 T G 64 48 BRCA TCGA-B6-A0WY UGGT2 SNP Missense_Mutation 13 96555290 C A 22 90 BRCA TCGA-B6-A0WY HERC2 SNP Missense_Mutation 15 28389261 G A 38 100 BRCA TCGA-B6-A0WY FBN1 SNP Missense_Mutation 15 48766481 C A 30 99 BRCA TCGA-B6-A0WY CCDC154 SNP Splice_site 16 1488052 A C 7 52 BRCA TCGA-B6-A0WY POLR3E SNP Missense_Mutation 16 22328486 C T 19 95 BRCA TCGA-B6-A0WY TERF2IP SNP Missense_Mutation 16 75690148 G A 48 77 BRCA TCGA-B6-A0WY NCOR1 SNP Nonsense_Mutation 17 16049835 G A 45 75 BRCA TCGA-B6-A0WY MLL4 SNP Nonsense_Mutation 19 36220093 G T 37 94 BRCA TCGA-B6-A0WY ALPI SNP Missense_Mutation 2 233322998 G A 37 29 BRCA TCGA-B6-A0WY TFE3 SNP Silent 23 48888074 T C 57 50 BRCA TCGA-B6-A0WY ENSG00000230883 SNP Missense_Mutation 3 127282638 T G 50 39 BRCA TCGA-B6-A0WY PIK3CA DEL In_Frame_Del 3 178916940 AGAAAAGAT - 3 59 BRCA TCGA-B6-A0WY HIST1H3G SNP Missense_Mutation 6 26271462 C T 31 95 BRCA TCGA-B6-A0WY ENSG00000214605 SNP Splice_site 7 72281250 A G 6 58 BRCA TCGA-B6-A0WY KIAA2026 SNP Missense_Mutation 9 5922013 G A 36 74 BRCA TCGA-B6-A0WZ VANGL1 SNP Missense_Mutation 1 116233968 G T 48 75 BRCA TCGA-B6-A0WZ SMCP SNP Missense_Mutation 1 152857160 G A 45 55 BRCA TCGA-B6-A0WZ HSPA6 SNP Silent 1 161496275 C T 32 50 BRCA TCGA-B6-A0WZ QSOX1 SNP Silent 1 180147983 G A 45 62 BRCA TCGA-B6-A0WZ PTPN14 SNP Silent 1 214557335 G A 41 47 BRCA TCGA-B6-A0WZ PRDM16 SNP Missense_Mutation 1 3313062 A G 16 90 BRCA TCGA-B6-A0WZ NFKB2 SNP Splice_site 10 104156483 G A 33 95 BRCA TCGA-B6-A0WZ SLC35G1 SNP Silent 10 95660752 G A 45 52 BRCA TCGA-B6-A0WZ MDK SNP Missense_Mutation 11 46403648 T C 55 74 BRCA TCGA-B6-A0WZ OR51F2 SNP Missense_Mutation 11 4843407 C G 32 53 BRCA TCGA-B6-A0WZ STAB2 SNP Missense_Mutation 12 104056685 G A 37 64 BRCA TCGA-B6-A0WZ UBC SNP Missense_Mutation 12 125397950 C G 30 93 BRCA TCGA-B6-A0WZ PDE3A SNP Silent 12 20787975 G A 33 51 BRCA TCGA-B6-A0WZ A2ML1 SNP Missense_Mutation 12 9020914 C T 23 35 BRCA TCGA-B6-A0WZ TMPO SNP Missense_Mutation 12 98925559 G C 33 78 BRCA TCGA-B6-A0WZ TSC22D1 SNP Silent 13 45148990 G A 45 70 BRCA TCGA-B6-A0WZ TSC22D1 SNP Missense_Mutation 13 45149901 G C 45 94 BRCA TCGA-B6-A0WZ PCDH9 SNP Missense_Mutation 13 67799842 C G 30 98 BRCA TCGA-B6-A0WZ ZFYVE21 SNP Silent 14 104198964 C T 19 47 BRCA TCGA-B6-A0WZ AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-B6-A0WZ PSMC6 SNP Silent 14 53194278 C T 29 53 BRCA TCGA-B6-A0WZ TTLL5 SNP Missense_Mutation 14 76249634 C T 32 69 BRCA TCGA-B6-A0WZ RASGRF1 SNP Silent 15 79296367 G A 43 64 BRCA TCGA-B6-A0WZ SNP Silent 16 18433303 G A 39 39 BRCA TCGA-B6-A0WZ CBFB SNP Silent 16 67070634 C A 31 59 BRCA TCGA-B6-A0WZ CTCF SNP Missense_Mutation 16 67655464 G C 45 100 BRCA TCGA-B6-A0WZ MAP2K4 SNP Missense_Mutation 17 12011144 C T 31 98 BRCA TCGA-B6-A0WZ CCL7 SNP Missense_Mutation 17 32598251 A C 6 69 BRCA TCGA-B6-A0WZ CSH2 SNP Missense_Mutation 17 61950968 C G 25 50 BRCA TCGA-B6-A0WZ FCGBP SNP Silent 19 40407987 G A 35 51 BRCA TCGA-B6-A0WZ PRAM1 SNP Silent 19 8564533 G A 38 53 BRCA TCGA-B6-A0WZ MUC16 SNP Silent 19 9062012 G A 45 51 BRCA TCGA-B6-A0WZ NEB SNP Nonsense_Mutation 2 152466574 C A 29 64 BRCA TCGA-B6-A0WZ TOMM34 SNP Missense_Mutation 20 43585106 C T 32 68 BRCA TCGA-B6-A0WZ RIMBP3 SNP Missense_Mutation 22 20456978 C T 21 50 BRCA TCGA-B6-A0WZ IQCB1 SNP Missense_Mutation 3 121526220 C A 29 56 BRCA TCGA-B6-A0WZ CHRD SNP Missense_Mutation 3 184100846 G A 41 87 BRCA TCGA-B6-A0WZ BSN SNP Silent 3 49692929 G A 48 30 BRCA TCGA-B6-A0WZ OR5K1 SNP Missense_Mutation 3 98188682 G A 45 47 BRCA TCGA-B6-A0WZ ARPC4 SNP Silent 3 9845592 G A 47 59 BRCA TCGA-B6-A0WZ MTTP SNP Missense_Mutation 4 100543919 G A 45 99 BRCA TCGA-B6-A0WZ GPR125 SNP Silent 4 22415369 G C 45 68 BRCA TCGA-B6-A0WZ PHAX SNP Missense_Mutation 5 125939631 C T 28 69 BRCA TCGA-B6-A0WZ ODZ2 SNP Missense_Mutation 5 167517656 G C 33 76 BRCA TCGA-B6-A0WZ ITGA1 SNP Silent 5 52193332 G A 33 54 BRCA TCGA-B6-A0WZ IQGAP2 SNP Missense_Mutation 5 75906961 C G 21 60 BRCA TCGA-B6-A0WZ ZFYVE16 SNP Nonsense_Mutation 5 79733498 C T 29 55 BRCA TCGA-B6-A0WZ GPR98 SNP Missense_Mutation 5 90001311 T A 52 54 BRCA TCGA-B6-A0WZ SHPRH SNP Missense_Mutation 6 146242419 C G 32 100 BRCA TCGA-B6-A0WZ PLEKHG1 SNP Silent 6 151055150 C G 30 47 BRCA TCGA-B6-A0WZ CPA5 SNP Silent 7 130003343 T G 60 47 BRCA TCGA-B6-A0WZ SNX13 SNP Missense_Mutation 7 17873801 C G 29 98 BRCA TCGA-B6-A0WZ ADCYAP1R1 SNP Silent 7 31117691 C T 30 59 BRCA TCGA-B6-A0WZ ADCYAP1R1 SNP Silent 7 31117700 C T 29 94 BRCA TCGA-B6-A0WZ TNS3 SNP Silent 7 47344561 C T 30 78 BRCA TCGA-B6-A0WZ UNC5D SNP Missense_Mutation 8 35616880 G A 41 100 BRCA TCGA-B6-A0WZ RPL7 SNP Silent 8 74204479 G A 45 57 BRCA TCGA-B6-A0WZ SURF6 SNP Missense_Mutation 9 136199031 G A 38 61 BRCA TCGA-B6-A0WZ TLN1 SNP Missense_Mutation 9 35710572 C T 31 100 BRCA TCGA-B6-A0WZ SYK SNP Missense_Mutation 9 93629418 G T 44 72 BRCA TCGA-B6-A0X0 NOTCH2 SNP Missense_Mutation 1 120465265 C A 17 86 BRCA TCGA-B6-A0X0 MYPN SNP Silent 10 69961611 G T 45 63 BRCA TCGA-B6-A0X0 GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-B6-A0X0 LCP1 SNP Missense_Mutation 13 46732779 T C 51 65 BRCA TCGA-B6-A0X0 GOLGA8J SNP Missense_Mutation 15 30382467 A G 7 63 BRCA TCGA-B6-A0X0 MYO18A SNP Missense_Mutation 17 27445423 T C 52 53 BRCA TCGA-B6-A0X0 ITGB3 SNP Missense_Mutation 17 45367609 A G 4 90 BRCA TCGA-B6-A0X0 SEH1L SNP Missense_Mutation 18 12971157 G A 40 89 BRCA TCGA-B6-A0X0 FBN3 SNP Missense_Mutation 19 8191626 C T 23 56 BRCA TCGA-B6-A0X0 LRP2 SNP Missense_Mutation 2 170135997 C A 20 100 BRCA TCGA-B6-A0X0 STAT4 SNP Nonsense_Mutation 2 191922752 G A 37 59 BRCA TCGA-B6-A0X0 PHF20 SNP Missense_Mutation 20 34519315 A T 7 88 BRCA TCGA-B6-A0X0 RUNX1 DEL In_Frame_Del 21 36252921 AGCATTTCTCAGCTC - 15 17 BRCA TCGA-B6-A0X0 FRMPD4 SNP Missense_Mutation 23 12722503 C A 32 82 BRCA TCGA-B6-A0X0 ASMTL SNP Silent 23 1522276 C T 28 64 BRCA TCGA-B6-A0X0 ALAS2 SNP Silent 23 55042138 G T 43 50 BRCA TCGA-B6-A0X0 PCDH19 SNP Missense_Mutation 23 99663130 G C 41 99 BRCA TCGA-B6-A0X0 SLCO2A1 SNP Missense_Mutation 3 133674014 C T 31 60 BRCA TCGA-B6-A0X0 SH3D19 SNP Missense_Mutation 4 152096472 G T 41 88 BRCA TCGA-B6-A0X0 CDH6 SNP Silent 5 31294263 C T 23 35 BRCA TCGA-B6-A0X0 TNRC18 SNP Missense_Mutation 7 5427950 G A 39 58 BRCA TCGA-B6-A0X0 ZNF804B SNP Silent 7 88964843 T C 54 49 BRCA TCGA-B6-A0X1 AKNAD1 SNP Missense_Mutation 1 109394956 C G 29 51 BRCA TCGA-B6-A0X1 ATXN7L2 SNP Missense_Mutation 1 110031008 A G 3 65 BRCA TCGA-B6-A0X1 FCRL5 SNP Missense_Mutation 1 157516898 G A 37 43 BRCA TCGA-B6-A0X1 CYB5R1 SNP Missense_Mutation 1 202931677 T A 63 63 BRCA TCGA-B6-A0X1 TRIM67 SNP Missense_Mutation 1 231344862 C G 18 66 BRCA TCGA-B6-A0X1 OR2T5 SNP Missense_Mutation 1 248652151 G A 41 50 BRCA TCGA-B6-A0X1 NSMCE4A SNP Splice_site 10 123727171 G C 33 64 BRCA TCGA-B6-A0X1 ITIH2 SNP Silent 10 7769038 T G 63 47 BRCA TCGA-B6-A0X1 OR8B2 SNP Missense_Mutation 11 124252746 C G 32 57 BRCA TCGA-B6-A0X1 RCN1 SNP Missense_Mutation 11 32119986 T A 54 71 BRCA TCGA-B6-A0X1 OR5AK2 DEL Frame_Shift_Del 11 56756447 A - 7 57 BRCA TCGA-B6-A0X1 OR5AK2 SNP Missense_Mutation 11 56756448 G C 34 43 BRCA TCGA-B6-A0X1 PGM2L1 SNP Missense_Mutation 11 74058348 G T 46 96 BRCA TCGA-B6-A0X1 ATP4B SNP Missense_Mutation 13 114303807 A C 12 63 BRCA TCGA-B6-A0X1 ATP12A SNP Missense_Mutation 13 25265155 C T 23 94 BRCA TCGA-B6-A0X1 AKAP11 SNP Missense_Mutation 13 42876522 G A 42 81 BRCA TCGA-B6-A0X1 LOC440292 SNP Missense_Mutation 15 78237071 C A 27 51 BRCA TCGA-B6-A0X1 TMC3 SNP Silent 15 81625444 C G 31 29 BRCA TCGA-B6-A0X1 ABHD2 SNP Missense_Mutation 15 89731456 C T 22 70 BRCA TCGA-B6-A0X1 C15orf38-AP3S2 SNP Silent 15 90447196 G A 48 58 BRCA TCGA-B6-A0X1 XPO6 SNP Nonsense_Mutation 16 28187312 G T 36 55 BRCA TCGA-B6-A0X1 CORO7 SNP Silent 16 4408084 G A 40 51 BRCA TCGA-B6-A0X1 GPT2 SNP Missense_Mutation 16 46934670 G A 39 97 BRCA TCGA-B6-A0X1 SEC14L5 SNP Silent 16 5038173 C T 32 74 BRCA TCGA-B6-A0X1 POLR2C SNP Silent 16 57503883 C T 31 47 BRCA TCGA-B6-A0X1 GRIN2A INS Frame_Shift_Ins 16 9934882 - A 60 75 BRCA TCGA-B6-A0X1 BRCA1 DEL Frame_Shift_Del 17 41276047 C - 32 69 BRCA TCGA-B6-A0X1 GPATCH8 SNP Silent 17 42476445 G A 43 51 BRCA TCGA-B6-A0X1 SGCA SNP Missense_Mutation 17 48245822 T A 54 63 BRCA TCGA-B6-A0X1 TP53 SNP Splice_Site 17 7576852 C A 18 72 BRCA TCGA-B6-A0X1 USP43 DEL Frame_Shift_Del 17 9586235 CT - 24 83 BRCA TCGA-B6-A0X1 TM6SF2 SNP Silent 19 19377377 C A 21 56 BRCA TCGA-B6-A0X1 TLE2 SNP Missense_Mutation 19 3028349 C T 31 91 BRCA TCGA-B6-A0X1 ZNF345 SNP Missense_Mutation 19 37368936 G C 33 51 BRCA TCGA-B6-A0X1 DPP4 SNP Missense_Mutation 2 162849872 C T 30 64 BRCA TCGA-B6-A0X1 TTN SNP Missense_Mutation 2 179613845 A G 9 47 BRCA TCGA-B6-A0X1 ALS2CR8 SNP Missense_Mutation 2 203826027 A G 6 80 BRCA TCGA-B6-A0X1 CAD SNP Missense_Mutation 2 27454419 G C 45 95 BRCA TCGA-B6-A0X1 BID DEL In_Frame_Del 22 18220878 TGGCCACCTTCT - 55 48 BRCA TCGA-B6-A0X1 OSBP2 SNP Missense_Mutation 22 31302270 G A 39 76 BRCA TCGA-B6-A0X1 RBM41 SNP Missense_Mutation 23 106331858 C G 24 77 BRCA TCGA-B6-A0X1 TLR7 DEL In_Frame_Del 23 12904665 TCTGTCTTTCAATTT - 50 56 BRCA TCGA-B6-A0X1 PRKX SNP Missense_Mutation 23 3592796 A C 2 79 BRCA TCGA-B6-A0X1 WDR45 SNP Missense_Mutation 23 48932526 T C 50 87 BRCA TCGA-B6-A0X1 GDPD2 SNP Missense_Mutation 23 69650939 C G 26 54 BRCA TCGA-B6-A0X1 DMRTC1 SNP Missense_Mutation 23 72092354 G C 39 40 BRCA TCGA-B6-A0X1 CCDC80 SNP Missense_Mutation 3 112358633 C A 21 56 BRCA TCGA-B6-A0X1 MYLK SNP Missense_Mutation 3 123337588 C T 17 90 BRCA TCGA-B6-A0X1 COPG1 SNP Missense_Mutation 3 128973853 G C 38 91 BRCA TCGA-B6-A0X1 ATP11B SNP Silent 3 182554293 G A 45 35 BRCA TCGA-B6-A0X1 EPHB3 SNP Missense_Mutation 3 184297496 G C 40 96 BRCA TCGA-B6-A0X1 MASP1 SNP Nonsense_Mutation 3 186953802 A T 8 47 BRCA TCGA-B6-A0X1 CACNA2D2 SNP Missense_Mutation 3 50402899 C T 31 90 BRCA TCGA-B6-A0X1 MINA SNP Missense_Mutation 3 97677945 C G 19 66 BRCA TCGA-B6-A0X1 SCFD2 SNP Silent 4 54011747 G A 46 51 BRCA TCGA-B6-A0X1 PCDHB12 SNP Missense_Mutation 5 140588586 T C 51 57 BRCA TCGA-B6-A0X1 ARAP3 SNP Missense_Mutation 5 141059669 G C 43 58 BRCA TCGA-B6-A0X1 HK3 SNP Missense_Mutation 5 176308510 C T 31 84 BRCA TCGA-B6-A0X1 OSMR SNP Silent 5 38881757 C G 30 45 BRCA TCGA-B6-A0X1 DST DEL Frame_Shift_Del 6 56417973 GCAA - 42 60 BRCA TCGA-B6-A0X1 DST DEL In_Frame_Del 6 56417978 AGAATTCTCTCCTTC - 15 44 BRCA TCGA-B6-A0X1 MDN1 SNP Missense_Mutation 6 90402230 G A 38 86 BRCA TCGA-B6-A0X1 RSPH10B2 SNP Silent 7 6820477 C T 20 58 BRCA TCGA-B6-A0X1 CYP3A4 SNP Missense_Mutation 7 99366036 A C 6 71 BRCA TCGA-B6-A0X1 UNC5D SNP Nonsense_Mutation 8 35608205 G T 33 99 BRCA TCGA-B6-A0X1 ENSG00000236191 INS In_Frame_Ins 8 69438017 - TCA 56 74 BRCA TCGA-B6-A0X1 TRPA1 DEL Frame_Shift_Del 8 72959429 AAATCTAAAAGTACCTTTGAA - 9 49 BRCA TCGA-B6-A0X1 SNAPC3 SNP Missense_Mutation 9 15451369 A G 13 89 BRCA TCGA-B6-A0X1 FOXB2 SNP Missense_Mutation 9 79634614 C T 22 96 BRCA TCGA-B6-A0X4 WDR3 SNP Missense_Mutation 1 118491067 C A 32 61 BRCA TCGA-B6-A0X4 ATP8B2 SNP Missense_Mutation 1 154303935 G A 37 99 BRCA TCGA-B6-A0X4 FCGR2B SNP Silent 1 161641360 C T 17 44 BRCA TCGA-B6-A0X4 KCTD3 SNP Missense_Mutation 1 215759936 C T 21 97 BRCA TCGA-B6-A0X4 CYP4Z1 SNP Splice_site 1 47533338 A C 11 50 BRCA TCGA-B6-A0X4 SLC22A25 SNP Missense_Mutation 11 62931501 C T 30 47 BRCA TCGA-B6-A0X4 SACS SNP Missense_Mutation 13 23909753 C A 32 49 BRCA TCGA-B6-A0X4 DLK1 SNP Missense_Mutation 14 101201147 G A 39 78 BRCA TCGA-B6-A0X4 KIAA0182 DEL Frame_Shift_Del 16 85701963 G - 35 42 BRCA TCGA-B6-A0X4 MAP2K4 SNP Missense_Mutation 17 11998898 C T 31 76 BRCA TCGA-B6-A0X4 ZNF229 SNP Nonsense_Mutation 19 44933794 G A 37 65 BRCA TCGA-B6-A0X4 MUC16 SNP Missense_Mutation 19 9005718 C T 21 59 BRCA TCGA-B6-A0X4 VIL1 SNP Missense_Mutation 2 219301940 C A 27 76 BRCA TCGA-B6-A0X4 IFT80 SNP Silent 3 160095282 T A 53 45 BRCA TCGA-B6-A0X4 AGXT2 SNP Silent 5 35013131 C T 31 47 BRCA TCGA-B6-A0X4 GRIK2 SNP Nonsense_Mutation 6 102337557 C T 31 68 BRCA TCGA-B6-A0X4 RNF217 SNP Nonsense_Mutation 6 125397899 C T 23 85 BRCA TCGA-B6-A0X4 MLL3 SNP Nonsense_Mutation 7 151945601 C A 31 60 BRCA TCGA-B6-A0X4 ATAD2 SNP Missense_Mutation 8 124358377 A C 9 60 BRCA TCGA-B6-A0X5 KCND3 SNP Silent 1 112525097 G A 37 45 BRCA TCGA-B6-A0X5 DENND2C SNP Silent 1 115168327 A G 6 55 BRCA TCGA-B6-A0X5 DENND4B SNP Silent 1 153912954 C T 27 19 BRCA TCGA-B6-A0X5 CENPL SNP Nonsense_Mutation 1 173780350 G A 40 67 BRCA TCGA-B6-A0X5 PADI4 SNP Missense_Mutation 1 17668504 T C 58 58 BRCA TCGA-B6-A0X5 TMEM72 SNP Missense_Mutation 10 45423377 G A 39 54 BRCA TCGA-B6-A0X5 SYVN1 SNP Missense_Mutation 11 64897543 C G 32 73 BRCA TCGA-B6-A0X5 DNHD1 SNP Silent 11 6584617 C T 25 65 BRCA TCGA-B6-A0X5 FAM186A SNP Missense_Mutation 12 50746116 G A 42 54 BRCA TCGA-B6-A0X5 CELA1 SNP Missense_Mutation 12 51736375 C T 31 61 BRCA TCGA-B6-A0X5 AMHR2 SNP Missense_Mutation 12 53819568 G T 36 51 BRCA TCGA-B6-A0X5 NHLRC3 SNP Silent 13 39616426 G A 45 58 BRCA TCGA-B6-A0X5 NEMF SNP Missense_Mutation 14 50267209 C A 29 54 BRCA TCGA-B6-A0X5 NRXN3 SNP Silent 14 80328256 G A 37 42 BRCA TCGA-B6-A0X5 STRA6 SNP Silent 15 74494504 C T 28 50 BRCA TCGA-B6-A0X5 ARID3B INS In_Frame_Ins 15 74883640 - CTGCTG 14 12 BRCA TCGA-B6-A0X5 SLC13A5 INS Frame_Shift_Ins 17 6590917 - A 45 96 BRCA TCGA-B6-A0X5 ALOXE3 SNP Missense_Mutation 17 8011882 A C 15 88 BRCA TCGA-B6-A0X5 SMARCA4 SNP Missense_Mutation 19 11095980 C T 31 61 BRCA TCGA-B6-A0X5 CBLC DEL In_Frame_Del 19 45284548 CAC - 25 50 BRCA TCGA-B6-A0X5 NAPA SNP Missense_Mutation 19 47994082 G A 47 97 BRCA TCGA-B6-A0X5 MYH14 SNP Missense_Mutation 19 50804951 C T 27 78 BRCA TCGA-B6-A0X5 KHSRP SNP Missense_Mutation 19 6416411 A G 11 87 BRCA TCGA-B6-A0X5 TTN SNP Silent 2 179427225 A G 16 50 BRCA TCGA-B6-A0X5 MYT1L SNP Splice_Site 2 2001120 C T 32 67 BRCA TCGA-B6-A0X5 SPP2 SNP Silent 2 234959682 G T 45 59 BRCA TCGA-B6-A0X5 MAT2A SNP Silent 2 85769379 A G 1 49 BRCA TCGA-B6-A0X5 ATP11C SNP Missense_Mutation 23 138845570 C A 32 58 BRCA TCGA-B6-A0X5 MAGEC2 SNP Missense_Mutation 23 141291280 G A 46 50 BRCA TCGA-B6-A0X5 MYLK SNP Silent 3 123512533 G A 37 51 BRCA TCGA-B6-A0X5 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-B6-A0X5 SATB1 SNP Missense_Mutation 3 18390811 C T 31 100 BRCA TCGA-B6-A0X5 VWA5B2 SNP Missense_Mutation 3 183956482 G A 37 90 BRCA TCGA-B6-A0X5 MST1 SNP Missense_Mutation 3 49722303 G A 40 48 BRCA TCGA-B6-A0X5 FAT1 SNP Missense_Mutation 4 187539727 G T 33 65 BRCA TCGA-B6-A0X5 RGS12 SNP Missense_Mutation 4 3318059 T G 52 45 BRCA TCGA-B6-A0X5 PCDHB5 SNP Missense_Mutation 5 140517278 G T 45 57 BRCA TCGA-B6-A0X5 AP3B1 SNP Missense_Mutation 5 77523987 G C 36 100 BRCA TCGA-B6-A0X5 BHMT SNP Missense_Mutation 5 78415130 A C 7 90 BRCA TCGA-B6-A0X5 SMOC2 SNP Missense_Mutation 6 169053691 C A 29 82 BRCA TCGA-B6-A0X5 PTPRN2 SNP Missense_Mutation 7 157959626 C T 31 63 BRCA TCGA-B6-A0X5 NSUN5 SNP Silent 7 72717933 C T 27 37 BRCA TCGA-B6-A0X5 PHF20L1 INS Frame_Shift_Ins 8 133829783 - G 7 60 BRCA TCGA-B6-A0X5 XPO7 SNP Missense_Mutation 8 21844661 G T 34 87 BRCA TCGA-B6-A0X5 RPS20 SNP Silent 8 56985781 C G 19 43 BRCA TCGA-B6-A0X5 AGPAT2 SNP Silent 9 139571560 G A 38 49 BRCA TCGA-B6-A0X5 TMEM203 SNP Silent 9 140099675 G A 47 61 BRCA TCGA-B6-A0X7 FCGR1C SNP Missense_Mutation 1 149375146 C A 18 46 BRCA TCGA-B6-A0X7 SH2D2A SNP Silent 1 156784870 G A 40 47 BRCA TCGA-B6-A0X7 USH2A SNP Missense_Mutation 1 215820992 G A 40 33 BRCA TCGA-B6-A0X7 FBXO18 SNP Missense_Mutation 10 5937117 G T 46 50 BRCA TCGA-B6-A0X7 CEP290 SNP Splice_site 12 88474172 C T 26 55 BRCA TCGA-B6-A0X7 WFIKKN1 SNP Silent 16 683760 C T 23 4 BRCA TCGA-B6-A0X7 ARHGEF1 SNP Missense_Mutation 19 42410160 C T 26 72 BRCA TCGA-B6-A0X7 NTSR1 SNP Silent 20 61340826 G A 38 50 BRCA TCGA-B6-A0X7 KCNQ2 SNP Missense_Mutation 20 62038263 C T 31 98 BRCA TCGA-B6-A0X7 USP9X SNP Missense_Mutation 23 41025364 G A 37 97 BRCA TCGA-B6-A0X7 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-B6-A0X7 CACNA2D2 SNP Silent 3 50413608 G A 40 54 BRCA TCGA-B6-A0X7 CACNA1D DEL In_Frame_Del 3 53765129 AAC - 9 64 BRCA TCGA-B6-A0X7 TLR10 DEL In_Frame_Del 4 38777170 AAC - 13 56 BRCA TCGA-B6-A0X7 AASDH DEL Frame_Shift_Del 4 57216157 C - 30 97 BRCA TCGA-B6-A0X7 MLLT4 SNP Nonsense_Mutation 6 168312077 C T 21 65 BRCA TCGA-B6-A0X7 ABCA13 SNP Missense_Mutation 7 48494768 G T 36 65 BRCA TCGA-B6-A0X7 CSMD3 SNP Silent 8 113841931 T G 53 75 BRCA TCGA-B6-A1KC VCAM1 SNP Missense_Mutation 1 101190339 C A 25 65 BRCA TCGA-B6-A1KC HRNR SNP Missense_Mutation 1 152188526 C T 31 46 BRCA TCGA-B6-A1KC CRP SNP Silent 1 159683855 C A 31 53 BRCA TCGA-B6-A1KC C1orf227 SNP Missense_Mutation 1 213009307 G T 48 60 BRCA TCGA-B6-A1KC MPL SNP Missense_Mutation 1 43817895 G A 35 62 BRCA TCGA-B6-A1KC MUC5B SNP Silent 11 1266537 G T 48 44 BRCA TCGA-B6-A1KC FLI1 SNP Missense_Mutation 11 128680620 G A 46 100 BRCA TCGA-B6-A1KC ANKRD13A SNP Missense_Mutation 12 110456273 G T 36 85 BRCA TCGA-B6-A1KC POTEG SNP Silent 14 19553494 G A 36 54 BRCA TCGA-B6-A1KC ARHGEF40 SNP Missense_Mutation 14 21543885 C T 19 44 BRCA TCGA-B6-A1KC CEP152 SNP Missense_Mutation 15 49031351 C T 28 52 BRCA TCGA-B6-A1KC HS3ST2 SNP Missense_Mutation 16 22926374 A G 5 76 BRCA TCGA-B6-A1KC ATP9B SNP Nonsense_Mutation 18 76870422 G T 47 96 BRCA TCGA-B6-A1KC RALBP1 SNP Missense_Mutation 18 9525780 A C 3 71 BRCA TCGA-B6-A1KC DOPEY2 SNP Silent 21 37665770 A T 9 34 BRCA TCGA-B6-A1KC FAM70A SNP Missense_Mutation 23 119418990 G T 36 78 BRCA TCGA-B6-A1KC MAGEC2 SNP Missense_Mutation 23 141291556 G C 33 56 BRCA TCGA-B6-A1KC F8 SNP Missense_Mutation 23 154088864 C A 21 82 BRCA TCGA-B6-A1KC PHKA1 DEL In_Frame_Del 23 71873364 TCTTTATAT - 54 83 BRCA TCGA-B6-A1KC ZXDC SNP Missense_Mutation 3 126160731 G C 41 51 BRCA TCGA-B6-A1KC PLCH1 SNP Silent 3 155201158 G T 33 81 BRCA TCGA-B6-A1KC ARPP21 SNP Silent 3 35770832 G A 38 25 BRCA TCGA-B6-A1KC TMEM110-MUSTN1 SNP Missense_Mutation 3 52867422 G A 37 92 BRCA TCGA-B6-A1KC FEZF2 SNP Missense_Mutation 3 62358251 C T 28 84 BRCA TCGA-B6-A1KC EIF4E1B INS In_Frame_Ins 5 176070219 - CCG 19 31 BRCA TCGA-B6-A1KC SEPP1 INS Silent 5 42808360 - TACA 55 54 BRCA TCGA-B6-A1KC ABCB8 SNP Missense_Mutation 7 150731381 G A 40 63 BRCA TCGA-B6-A1KC KIAA2026 SNP Silent 9 5921685 A G 15 66 BRCA TCGA-B6-A1KC FAM22G SNP Silent 9 99698810 C A 31 51 BRCA TCGA-B6-A1KF FCGR1B SNP Missense_Mutation 1 120934573 C T 19 64 BRCA TCGA-B6-A1KF ARHGEF2 SNP Missense_Mutation 1 155921720 G C 33 75 BRCA TCGA-B6-A1KF IQGAP3 SNP Missense_Mutation 1 156507048 T C 58 88 BRCA TCGA-B6-A1KF MYBPH SNP Missense_Mutation 1 203144796 G A 41 44 BRCA TCGA-B6-A1KF NFASC SNP Silent 1 204942492 C T 25 57 BRCA TCGA-B6-A1KF RYR2 DNP Missense_Mutation 1 237777445 GC TT 42 88 BRCA TCGA-B6-A1KF OR2T3 SNP Silent 1 248637452 G A 37 50 BRCA TCGA-B6-A1KF ZMYM6NB SNP Missense_Mutation 1 35449532 T C 55 59 BRCA TCGA-B6-A1KF EPC1 DEL Frame_Shift_Del 10 32581994 TT - 56 63 BRCA TCGA-B6-A1KF RNF169 DEL In_Frame_Del 11 74547205 AAG - 1 50 BRCA TCGA-B6-A1KF RNF169 DEL Frame_Shift_Del 11 74547209 AGCAC - 15 68 BRCA TCGA-B6-A1KF HECTD4 SNP Missense_Mutation 12 112701998 G T 38 84 BRCA TCGA-B6-A1KF KRT77 SNP Silent 12 53086216 G A 38 44 BRCA TCGA-B6-A1KF CHAMP1 SNP Missense_Mutation 13 115090953 C T 19 59 BRCA TCGA-B6-A1KF ARHGEF40 SNP Silent 14 21552965 C T 32 61 BRCA TCGA-B6-A1KF METTL3 SNP Missense_Mutation 14 21967278 G C 37 99 BRCA TCGA-B6-A1KF ZFP36L1 INS Frame_Shift_Ins 14 69257104 - T 20 80 BRCA TCGA-B6-A1KF GLCE SNP Missense_Mutation 15 69560895 G C 41 97 BRCA TCGA-B6-A1KF C16orf93 SNP Missense_Mutation 16 30768802 T C 63 63 BRCA TCGA-B6-A1KF CREBBP SNP Missense_Mutation 16 3781889 G T 44 100 BRCA TCGA-B6-A1KF TMED6 SNP Missense_Mutation 16 69385649 G A 35 59 BRCA TCGA-B6-A1KF IST1 SNP Silent 16 71961713 A G 8 56 BRCA TCGA-B6-A1KF LGALS9B SNP Missense_Mutation 17 20356907 C T 23 47 BRCA TCGA-B6-A1KF MYO18A SNP Silent 17 27434125 A C 14 51 BRCA TCGA-B6-A1KF USP32 SNP Missense_Mutation 17 58260771 A G 16 90 BRCA TCGA-B6-A1KF MAP2K6 SNP Silent 17 67519689 C T 31 58 BRCA TCGA-B6-A1KF C19orf66 SNP Missense_Mutation 19 10200684 C T 27 42 BRCA TCGA-B6-A1KF TECR SNP Missense_Mutation 19 14674030 G A 38 91 BRCA TCGA-B6-A1KF ZNF223 SNP Missense_Mutation 19 44571134 T A 58 49 BRCA TCGA-B6-A1KF ZNF749 SNP Silent 19 57955449 T G 54 48 BRCA TCGA-B6-A1KF FBN3 SNP Silent 19 8155008 G A 38 43 BRCA TCGA-B6-A1KF CCDC93 SNP Missense_Mutation 2 118753931 A C 6 90 BRCA TCGA-B6-A1KF BAZ2B SNP Missense_Mutation 2 160335202 G A 45 85 BRCA TCGA-B6-A1KF CHRNG SNP Missense_Mutation 2 233405397 G A 39 50 BRCA TCGA-B6-A1KF C20orf26 SNP Missense_Mutation 20 20051511 C T 24 83 BRCA TCGA-B6-A1KF SEMG2 SNP Missense_Mutation 20 43850896 G A 40 42 BRCA TCGA-B6-A1KF SLC12A5 SNP Silent 20 44664069 G T 48 52 BRCA TCGA-B6-A1KF C20orf43 SNP Missense_Mutation 20 55092227 A G 9 76 BRCA TCGA-B6-A1KF PCK1 SNP Missense_Mutation 20 56137929 C T 32 96 BRCA TCGA-B6-A1KF UTP14A SNP Missense_Mutation 23 129058938 G A 33 56 BRCA TCGA-B6-A1KF ABI3BP SNP Missense_Mutation 3 100515255 G A 35 65 BRCA TCGA-B6-A1KF XRN1 SNP Silent 3 142031572 G T 33 53 BRCA TCGA-B6-A1KF KIAA0922 SNP Missense_Mutation 4 154478218 G C 41 86 BRCA TCGA-B6-A1KF UGT3A2 SNP Missense_Mutation 5 36035966 G A 40 56 BRCA TCGA-B6-A1KF LIFR SNP Missense_Mutation 5 38481792 G T 48 87 BRCA TCGA-B6-A1KF ARRDC3 INS Frame_Shift_Ins 5 90670942 - CA 18 100 BRCA TCGA-B6-A1KF SPAM1 SNP Silent 7 123599783 T A 55 44 BRCA TCGA-B6-A1KF OR2A42 SNP Missense_Mutation 7 143929735 C T 19 54 BRCA TCGA-B6-A1KF ARHGEF5 SNP Nonsense_Mutation 7 144062632 C G 29 58 BRCA TCGA-B6-A1KF NME8 SNP Silent 7 37916509 G A 36 51 BRCA TCGA-B6-A1KF HIP1 SNP Missense_Mutation 7 75197549 C T 29 96 BRCA TCGA-B6-A1KF GPC2 SNP Silent 7 99769764 C T 32 57 BRCA TCGA-B6-A1KF IKBKB SNP Nonsense_Mutation 8 42174288 G T 45 100 BRCA TCGA-B6-A1KF WWP1 SNP Splice_site 8 87460602 A G 11 67 BRCA TCGA-B6-A1KF DNM1 SNP Missense_Mutation 9 131010934 G C 41 84 BRCA TCGA-B6-A1KF RANBP6 SNP Missense_Mutation 9 6012355 C G 30 63 BRCA TCGA-B6-A1KF PGM5 SNP Missense_Mutation 9 71006498 C T 21 96 BRCA TCGA-B6-A1KI ANKRD35 SNP Silent 1 145556634 A G 4 51 BRCA TCGA-B6-A1KI WASH7P SNP Silent 1 17365 C G 32 54 BRCA TCGA-B6-A1KI OBSCN SNP Silent 1 228497229 G A 40 21 BRCA TCGA-B6-A1KI RET SNP Silent 10 43609956 G A 39 44 BRCA TCGA-B6-A1KI MUC5B SNP Silent 11 1268064 C T 21 49 BRCA TCGA-B6-A1KI OR8K3 SNP Missense_Mutation 11 56085814 A T 9 76 BRCA TCGA-B6-A1KI KIF21A SNP Missense_Mutation 12 39711947 C T 23 87 BRCA TCGA-B6-A1KI ATP11A SNP Silent 13 113512469 C G 25 47 BRCA TCGA-B6-A1KI GPX2 SNP Silent 14 65406536 C G 32 87 BRCA TCGA-B6-A1KI TLE3 SNP Silent 15 70347454 G A 34 52 BRCA TCGA-B6-A1KI C17orf104 SNP Missense_Mutation 17 42744021 C A 29 68 BRCA TCGA-B6-A1KI ABCA5 SNP Missense_Mutation 17 67246096 G A 35 84 BRCA TCGA-B6-A1KI ABHD1 SNP Missense_Mutation 2 27351965 T C 53 64 BRCA TCGA-B6-A1KI PIK3CA SNP Missense_Mutation 3 178936095 A C 7 90 BRCA TCGA-B6-A1KI XXYLT1 SNP Missense_Mutation 3 194877239 A G 4 88 BRCA TCGA-B6-A1KI ADAMTS3 SNP Silent 4 73161418 C T 31 43 BRCA TCGA-B6-A1KI CLPTM1L SNP Silent 5 1334410 C T 19 31 BRCA TCGA-B6-A1KI CATSPER3 SNP Missense_Mutation 5 134347257 C G 28 57 BRCA TCGA-B6-A1KI PCDHGA2 SNP Silent 5 140720953 G A 40 48 BRCA TCGA-B6-A1KI ESR1 DEL In_Frame_Del 6 152382240 TATTAT - 53 51 BRCA TCGA-B6-A1KI MAGI2 SNP Missense_Mutation 7 77789414 G A 39 97 BRCA TCGA-B6-A1KI KLF4 SNP Missense_Mutation 9 110249348 T G 64 78 BRCA TCGA-B6-A1KI CNTFR INS Frame_Shift_Ins 9 34552194 - G 7 49 BRCA TCGA-B6-A1KN SASS6 SNP Missense_Mutation 1 100573002 C A 24 53 BRCA TCGA-B6-A1KN DENND2D SNP Missense_Mutation 1 111739850 G A 43 94 BRCA TCGA-B6-A1KN SYT11 SNP Silent 1 155851077 C A 32 84 BRCA TCGA-B6-A1KN RIT1 SNP Silent 1 155874570 A T 14 46 BRCA TCGA-B6-A1KN SUCO SNP Nonsense_Mutation 1 172526472 C T 25 81 BRCA TCGA-B6-A1KN HTR6 SNP Silent 1 19992948 G A 39 55 BRCA TCGA-B6-A1KN NUAK2 SNP Missense_Mutation 1 205275345 C A 17 62 BRCA TCGA-B6-A1KN BAI2 DEL In_Frame_Del 1 32202284 AAG - 1 89 BRCA TCGA-B6-A1KN CUBN SNP Silent 10 16916414 C G 17 47 BRCA TCGA-B6-A1KN AMPD3 SNP Missense_Mutation 11 10500146 C T 22 51 BRCA TCGA-B6-A1KN GALNTL4 SNP Silent 11 11394113 C T 21 62 BRCA TCGA-B6-A1KN KDM2A SNP Missense_Mutation 11 66999078 G A 41 80 BRCA TCGA-B6-A1KN C11orf24 SNP Missense_Mutation 11 68030078 C T 26 53 BRCA TCGA-B6-A1KN SCYL2 SNP Missense_Mutation 12 100732846 A T 16 54 BRCA TCGA-B6-A1KN TAS2R42 SNP Missense_Mutation 12 11338943 G T 34 43 BRCA TCGA-B6-A1KN BCAT1 SNP Missense_Mutation 12 24989509 G A 47 81 BRCA TCGA-B6-A1KN HSPH1 SNP Missense_Mutation 13 31714438 C A 29 99 BRCA TCGA-B6-A1KN TBC1D4 SNP Missense_Mutation 13 75880582 T G 62 55 BRCA TCGA-B6-A1KN UBAC2 SNP Missense_Mutation 13 99890758 T C 55 74 BRCA TCGA-B6-A1KN MKRN3 SNP Missense_Mutation 15 23811029 G A 40 49 BRCA TCGA-B6-A1KN AQP8 SNP Missense_Mutation 16 25228619 G T 48 83 BRCA TCGA-B6-A1KN PRSS53 SNP Missense_Mutation 16 31097783 G A 38 85 BRCA TCGA-B6-A1KN C17orf75 SNP Missense_Mutation 17 30665245 G A 33 98 BRCA TCGA-B6-A1KN KRTAP4-9 SNP Missense_Mutation 17 39261786 G A 46 66 BRCA TCGA-B6-A1KN TP53 SNP Missense_Mutation 17 7577144 A G 7 87 BRCA TCGA-B6-A1KN ZNF607 SNP Silent 19 38189031 A G 16 70 BRCA TCGA-B6-A1KN ZNF562 SNP Missense_Mutation 19 9770066 T C 64 48 BRCA TCGA-B6-A1KN OLFM2 SNP Missense_Mutation 19 9967532 C T 27 92 BRCA TCGA-B6-A1KN KIAA1715 SNP Missense_Mutation 2 176812363 T A 60 57 BRCA TCGA-B6-A1KN STAT4 DEL Splice_site 2 191895699 GC - 46 86 BRCA TCGA-B6-A1KN MTERFD2 SNP Missense_Mutation 2 242038987 A C 14 59 BRCA TCGA-B6-A1KN NOTO SNP Missense_Mutation 2 73438003 C A 25 60 BRCA TCGA-B6-A1KN C2orf51 SNP Silent 2 88826006 G A 38 32 BRCA TCGA-B6-A1KN B3GALT5 SNP Missense_Mutation 21 41032794 C T 25 50 BRCA TCGA-B6-A1KN CSF2RB SNP Missense_Mutation 22 37326821 G A 40 54 BRCA TCGA-B6-A1KN NOL12 SNP Splice_site 22 38083918 G A 41 83 BRCA TCGA-B6-A1KN MLC1 SNP Splice_Site 22 50512644 C T 19 90 BRCA TCGA-B6-A1KN BCORL1 SNP Missense_Mutation 23 129155089 C A 21 80 BRCA TCGA-B6-A1KN L1CAM SNP Missense_Mutation 23 153130895 G A 47 52 BRCA TCGA-B6-A1KN PPEF1 SNP Silent 23 18824526 G A 45 57 BRCA TCGA-B6-A1KN SHROOM4 SNP Missense_Mutation 23 50377358 C T 30 74 BRCA TCGA-B6-A1KN ARHGEF9 SNP Silent 23 62917053 G A 48 57 BRCA TCGA-B6-A1KN ZBTB11 SNP Missense_Mutation 3 101375072 G C 33 54 BRCA TCGA-B6-A1KN BRPF1 SNP Missense_Mutation 3 9783057 T G 51 45 BRCA TCGA-B6-A1KN MMAA SNP Missense_Mutation 4 146576496 T G 62 51 BRCA TCGA-B6-A1KN CYP4V2 SNP Missense_Mutation 4 187130348 C T 27 53 BRCA TCGA-B6-A1KN TBC1D1 SNP Silent 4 38029467 T C 50 50 BRCA TCGA-B6-A1KN ANKHD1 DEL Frame_Shift_Del 5 139909280 TGGGTAACTCAGTGCT - 55 86 BRCA TCGA-B6-A1KN TMCO6 SNP Missense_Mutation 5 140022616 A C 8 57 BRCA TCGA-B6-A1KN ZNF366 SNP Missense_Mutation 5 71739680 G T 33 88 BRCA TCGA-B6-A1KN NT5E SNP Missense_Mutation 6 86181085 G T 33 59 BRCA TCGA-B6-A1KN MUC17 SNP Missense_Mutation 7 100679631 G A 36 43 BRCA TCGA-B6-A1KN PPP1R3A SNP Nonsense_Mutation 7 113558745 C A 32 99 BRCA TCGA-B6-A1KN PRKDC INS Frame_Shift_Ins 8 48697854 - T 48 74 BRCA TCGA-B6-A1KN VCPIP1 SNP Missense_Mutation 8 67578547 T G 50 94 BRCA TCGA-BH-A0AU FAM212B SNP Missense_Mutation 1 112270149 C A 17 60 BRCA TCGA-BH-A0AU ARNT SNP Nonsense_Mutation 1 150807078 C A 30 100 BRCA TCGA-BH-A0AU TMEM39B SNP Silent 1 32568070 C T 30 37 BRCA TCGA-BH-A0AU ARCN1 SNP Silent 11 118468587 A G 3 55 BRCA TCGA-BH-A0AU NUMA1 SNP Missense_Mutation 11 71724980 C T 23 54 BRCA TCGA-BH-A0AU RFX4 SNP Missense_Mutation 12 107141268 G T 47 84 BRCA TCGA-BH-A0AU TIMELESS SNP Silent 12 56817648 G A 34 50 BRCA TCGA-BH-A0AU PCDH9 DEL Frame_Shift_Del 13 67802338 A - 9 68 BRCA TCGA-BH-A0AU ZNF207 SNP Nonsense_Mutation 17 30678929 C T 25 99 BRCA TCGA-BH-A0AU ACE SNP Silent 17 61570872 C T 29 70 BRCA TCGA-BH-A0AU ITGB4 SNP Missense_Mutation 17 73745040 G A 38 68 BRCA TCGA-BH-A0AU FASN SNP Missense_Mutation 17 80040450 C T 31 97 BRCA TCGA-BH-A0AU CNN2 SNP Missense_Mutation 19 1032430 C G 29 56 BRCA TCGA-BH-A0AU CNTD2 SNP Missense_Mutation 19 40729202 T A 57 26 BRCA TCGA-BH-A0AU PTPRH SNP Silent 19 55707939 G A 40 34 BRCA TCGA-BH-A0AU C19orf45 DEL Frame_Shift_Del 19 7573145 ACAAT - 6 45 BRCA TCGA-BH-A0AU NMS SNP Nonsense_Mutation 2 101097609 C T 19 47 BRCA TCGA-BH-A0AU MAP2 SNP Missense_Mutation 2 210557446 G T 34 39 BRCA TCGA-BH-A0AU MICAL3 SNP Missense_Mutation 22 18300541 G A 42 83 BRCA TCGA-BH-A0AU FRMPD4 SNP Missense_Mutation 23 12736089 A T 2 51 BRCA TCGA-BH-A0AU IFT122 SNP Silent 3 129207207 G A 38 42 BRCA TCGA-BH-A0AU HDAC11 SNP Missense_Mutation 3 13545616 G T 34 70 BRCA TCGA-BH-A0AU GALNT7 INS Frame_Shift_Ins 4 174219320 - ATACCCC 61 70 BRCA TCGA-BH-A0AU CCNG2 SNP Silent 4 78082828 C G 29 55 BRCA TCGA-BH-A0AU PCDHA4 SNP Silent 5 140188734 C T 19 49 BRCA TCGA-BH-A0AU HLA-G DEL Frame_Shift_Del 6 29796435 C - 18 51 BRCA TCGA-BH-A0AU TSC1 SNP Missense_Mutation 9 135798857 A T 11 87 BRCA TCGA-BH-A0AV POGZ SNP Missense_Mutation 1 151403234 G C 45 82 BRCA TCGA-BH-A0AV EPHA2 SNP Missense_Mutation 1 16475071 C T 26 94 BRCA TCGA-BH-A0AV PPFIA4 SNP Splice_site 1 203040821 C T 25 98 BRCA TCGA-BH-A0AV ZNF670 SNP Missense_Mutation 1 247201519 C G 24 50 BRCA TCGA-BH-A0AV HIVEP3 SNP Silent 1 41978910 G C 43 77 BRCA TCGA-BH-A0AV LRRIQ3 SNP Missense_Mutation 1 74507371 A C 8 63 BRCA TCGA-BH-A0AV CDH23 SNP Missense_Mutation 10 73553149 C T 31 96 BRCA TCGA-BH-A0AV DNHD1 SNP Silent 11 6592506 C T 18 56 BRCA TCGA-BH-A0AV C12orf36 SNP Missense_Mutation 12 13526168 T G 52 39 BRCA TCGA-BH-A0AV SLCO1B3 SNP Silent 12 21036408 A G 7 46 BRCA TCGA-BH-A0AV PTPRR SNP Missense_Mutation 12 71054738 G T 35 97 BRCA TCGA-BH-A0AV A2ML1 SNP Silent 12 8998791 C T 32 58 BRCA TCGA-BH-A0AV PZP SNP Silent 12 9312950 C T 27 38 BRCA TCGA-BH-A0AV N4BP2L2 SNP Missense_Mutation 13 33109915 G A 48 87 BRCA TCGA-BH-A0AV ALG11 SNP Missense_Mutation 13 52598472 C G 29 71 BRCA TCGA-BH-A0AV NEK5 SNP Missense_Mutation 13 52701581 C A 18 80 BRCA TCGA-BH-A0AV MGA SNP Missense_Mutation 15 42058547 A G 16 53 BRCA TCGA-BH-A0AV WDR76 SNP Missense_Mutation 15 44134845 A C 11 52 BRCA TCGA-BH-A0AV SPG11 SNP Splice_Site 15 44905735 C A 32 84 BRCA TCGA-BH-A0AV FAH SNP Silent 15 80454634 C G 31 23 BRCA TCGA-BH-A0AV TRAF7 SNP Missense_Mutation 16 2222552 C A 26 73 BRCA TCGA-BH-A0AV ATXN2L SNP Silent 16 28845927 G C 38 46 BRCA TCGA-BH-A0AV NLRC5 INS Frame_Shift_Ins 16 57092939 - TGTA 26 57 BRCA TCGA-BH-A0AV NLRC5 SNP Missense_Mutation 16 57092943 C G 30 57 BRCA TCGA-BH-A0AV CCDC103 SNP Missense_Mutation 17 42978466 T A 60 54 BRCA TCGA-BH-A0AV EPN3 INS Frame_Shift_Ins 17 48619449 - GC 46 69 BRCA TCGA-BH-A0AV TP53 SNP Missense_Mutation 17 7577538 C T 23 80 BRCA TCGA-BH-A0AV PCYT2 SNP Missense_Mutation 17 79864664 G C 33 62 BRCA TCGA-BH-A0AV ABCA7 SNP Missense_Mutation 19 1063775 G T 42 90 BRCA TCGA-BH-A0AV PNMAL1 SNP Nonsense_Mutation 19 46973872 G A 45 58 BRCA TCGA-BH-A0AV SIGLEC16 SNP Silent 19 50474928 T G 54 46 BRCA TCGA-BH-A0AV LRRC4B SNP Missense_Mutation 19 51021954 C A 27 91 BRCA TCGA-BH-A0AV ZNF578 SNP Missense_Mutation 19 53014843 A C 4 48 BRCA TCGA-BH-A0AV DPRX DEL Frame_Shift_Del 19 54139920 C - 20 49 BRCA TCGA-BH-A0AV DPRX DEL Frame_Shift_Del 19 54139922 CCACAACCGCCAATACCAGAGG - 30 52 BRCA TCGA-BH-A0AV EPS8L1 SNP Missense_Mutation 19 55594928 G C 39 46 BRCA TCGA-BH-A0AV ZNF8 SNP Missense_Mutation 19 58790466 G A 35 55 BRCA TCGA-BH-A0AV ZEB2 SNP Missense_Mutation 2 145157550 C G 20 81 BRCA TCGA-BH-A0AV SCN3A SNP Silent 2 166020192 G T 46 77 BRCA TCGA-BH-A0AV KLHL23 SNP Missense_Mutation 2 170592167 C G 31 86 BRCA TCGA-BH-A0AV MTA3 SNP Missense_Mutation 2 42931438 G A 33 100 BRCA TCGA-BH-A0AV COL20A1 SNP Splice_Site 20 61942976 G A 35 65 BRCA TCGA-BH-A0AV PRIC285 SNP Silent 20 62197238 C T 28 49 BRCA TCGA-BH-A0AV CHEK2 SNP Missense_Mutation 22 29115457 A C 12 57 BRCA TCGA-BH-A0AV DMC1 DEL In_Frame_Del 22 38962600 GTTTGTTCGCTG - 36 58 BRCA TCGA-BH-A0AV KLHL13 SNP Missense_Mutation 23 117033310 G C 35 97 BRCA TCGA-BH-A0AV CBLB SNP Silent 3 105421211 A T 11 55 BRCA TCGA-BH-A0AV RHO DEL Frame_Shift_Del 3 129251508 ACCCACCAGGGCTCCA - 6 70 BRCA TCGA-BH-A0AV MME SNP Silent 3 154889935 C T 27 29 BRCA TCGA-BH-A0AV TMPPE SNP Silent 3 33135493 G A 46 30 BRCA TCGA-BH-A0AV GNAI2 SNP Silent 3 50273779 C A 23 54 BRCA TCGA-BH-A0AV APBB2 SNP Missense_Mutation 4 41015638 G A 41 100 BRCA TCGA-BH-A0AV HSD17B4 SNP Missense_Mutation 5 118862855 G A 35 93 BRCA TCGA-BH-A0AV SEMA5A SNP Missense_Mutation 5 9202316 A C 1 88 BRCA TCGA-BH-A0AV KIF25 SNP Silent 6 168439275 C G 32 40 BRCA TCGA-BH-A0AV SLC17A3 SNP Missense_Mutation 6 25862627 T C 51 66 BRCA TCGA-BH-A0AV DHX16 SNP Silent 6 30623036 A G 8 51 BRCA TCGA-BH-A0AV PTCRA SNP Missense_Mutation 6 42891993 C T 22 46 BRCA TCGA-BH-A0AV CUL9 SNP Missense_Mutation 6 43191035 C T 30 85 BRCA TCGA-BH-A0AV TCTE1 SNP Missense_Mutation 6 44253808 A T 14 90 BRCA TCGA-BH-A0AV FHL5 SNP Missense_Mutation 6 97051596 T C 57 79 BRCA TCGA-BH-A0AV CADPS2 SNP Missense_Mutation 7 122153323 G A 40 72 BRCA TCGA-BH-A0AV TMEM106B SNP Missense_Mutation 7 12258129 G C 33 96 BRCA TCGA-BH-A0AV INTS1 SNP Silent 7 1525118 C T 20 46 BRCA TCGA-BH-A0AV DNAH11 SNP Missense_Mutation 7 21639693 C G 21 58 BRCA TCGA-BH-A0AV LYNX1 SNP Silent 8 143856615 G A 41 33 BRCA TCGA-BH-A0AV PIWIL2 SNP Missense_Mutation 8 22172647 G A 41 70 BRCA TCGA-BH-A0AV DENND1A SNP Silent 9 126520095 T A 55 53 BRCA TCGA-BH-A0AV APTX SNP Missense_Mutation 9 32987552 G C 35 67 BRCA TCGA-BH-A0AV ARHGEF39 SNP Silent 9 35664117 G A 34 67 BRCA TCGA-BH-A0AV VPS13A SNP Missense_Mutation 9 79955388 G C 45 73 BRCA TCGA-BH-A0AV FAM75C1 SNP Missense_Mutation 9 90536977 G T 42 55 BRCA TCGA-BH-A0AW TCHH SNP Missense_Mutation 1 152082392 T C 54 49 BRCA TCGA-BH-A0AW S100A6 SNP Missense_Mutation 1 153507273 C T 30 62 BRCA TCGA-BH-A0AW RXFP4 SNP Missense_Mutation 1 155912498 C A 22 62 BRCA TCGA-BH-A0AW OR6K2 SNP Missense_Mutation 1 158670357 A G 2 63 BRCA TCGA-BH-A0AW IFI16 SNP Silent 1 159021525 G A 33 48 BRCA TCGA-BH-A0AW DDR2 SNP Missense_Mutation 1 162724596 G T 36 99 BRCA TCGA-BH-A0AW PAPPA2 SNP Missense_Mutation 1 176811528 G A 46 81 BRCA TCGA-BH-A0AW CEP350 SNP Missense_Mutation 1 179989393 G C 45 54 BRCA TCGA-BH-A0AW CACNA1E SNP Missense_Mutation 1 181726188 G T 48 100 BRCA TCGA-BH-A0AW NFASC SNP Silent 1 204951129 C T 31 48 BRCA TCGA-BH-A0AW C1orf65 SNP Missense_Mutation 1 223568234 G A 37 70 BRCA TCGA-BH-A0AW EXO1 SNP Missense_Mutation 1 242016718 G A 41 97 BRCA TCGA-BH-A0AW OR14C36 SNP Silent 1 248512448 C T 32 59 BRCA TCGA-BH-A0AW TMEM50A SNP Missense_Mutation 1 25667009 C T 29 74 BRCA TCGA-BH-A0AW CCDC28B SNP Missense_Mutation 1 32669526 G T 39 75 BRCA TCGA-BH-A0AW ERMAP SNP Missense_Mutation 1 43296636 A G 13 55 BRCA TCGA-BH-A0AW CPT2 SNP Missense_Mutation 1 53676541 C T 30 79 BRCA TCGA-BH-A0AW CELF2 SNP Missense_Mutation 10 11299809 T C 54 92 BRCA TCGA-BH-A0AW EIF3A SNP Missense_Mutation 10 120797885 G A 45 68 BRCA TCGA-BH-A0AW FANK1 SNP Missense_Mutation 10 127697019 G C 33 73 BRCA TCGA-BH-A0AW DIP2C SNP Missense_Mutation 10 412267 G A 38 100 BRCA TCGA-BH-A0AW ERCC6 SNP Missense_Mutation 10 50667204 G A 45 56 BRCA TCGA-BH-A0AW C10orf12 SNP Missense_Mutation 10 98743922 G C 45 67 BRCA TCGA-BH-A0AW UBTD1 SNP Silent 10 99330208 C T 30 60 BRCA TCGA-BH-A0AW SBF2 SNP Missense_Mutation 11 10024173 G A 33 79 BRCA TCGA-BH-A0AW LAYN SNP Silent 11 111414805 G C 45 54 BRCA TCGA-BH-A0AW NCAM1 SNP Silent 11 113140962 C A 29 58 BRCA TCGA-BH-A0AW PHLDB1 SNP Silent 11 118520793 G A 45 57 BRCA TCGA-BH-A0AW PRDM10 SNP Missense_Mutation 11 129827741 G A 43 83 BRCA TCGA-BH-A0AW SLC17A6 SNP Missense_Mutation 11 22397543 C T 26 100 BRCA TCGA-BH-A0AW CARS SNP Splice_site 11 3023773 C T 32 80 BRCA TCGA-BH-A0AW QSER1 SNP Missense_Mutation 11 32976846 C A 28 94 BRCA TCGA-BH-A0AW TRIM21 SNP Missense_Mutation 11 4411449 C T 23 57 BRCA TCGA-BH-A0AW OR5M3 SNP Missense_Mutation 11 56237193 G C 41 70 BRCA TCGA-BH-A0AW OR10V1 SNP Silent 11 59480614 G A 42 51 BRCA TCGA-BH-A0AW KRTAP5-10 SNP Missense_Mutation 11 71276947 G A 44 82 BRCA TCGA-BH-A0AW UHRF1BP1L SNP Missense_Mutation 12 100452800 G A 45 80 BRCA TCGA-BH-A0AW CCDC53 SNP Splice_Site 12 102437882 C A 18 77 BRCA TCGA-BH-A0AW KLRC3 SNP Missense_Mutation 12 10570980 G C 33 54 BRCA TCGA-BH-A0AW CIT SNP Silent 12 120295450 G A 37 59 BRCA TCGA-BH-A0AW GOLGA3 SNP Missense_Mutation 12 133367817 C A 20 83 BRCA TCGA-BH-A0AW MPHOSPH8 SNP Missense_Mutation 13 20233249 C A 25 57 BRCA TCGA-BH-A0AW PROSER1 SNP Missense_Mutation 13 39587225 G T 43 55 BRCA TCGA-BH-A0AW LRCH1 SNP Missense_Mutation 13 47262104 G A 40 56 BRCA TCGA-BH-A0AW RCBTB1 SNP Missense_Mutation 13 50141327 G A 45 100 BRCA TCGA-BH-A0AW TRIM13 DEL Frame_Shift_Del 13 50587274 TT - 52 81 BRCA TCGA-BH-A0AW ABCC4 SNP Missense_Mutation 13 95715010 G T 48 100 BRCA TCGA-BH-A0AW TEP1 SNP Nonsense_Mutation 14 20845520 G A 45 57 BRCA TCGA-BH-A0AW CAPN3 SNP Splice_Site 15 42646653 T A 57 47 BRCA TCGA-BH-A0AW DENND4A SNP Silent 15 65962134 C T 30 55 BRCA TCGA-BH-A0AW ATF7IP2 SNP Silent 16 10524750 C T 32 47 BRCA TCGA-BH-A0AW PDP2 SNP Missense_Mutation 16 66919143 G A 39 100 BRCA TCGA-BH-A0AW PMFBP1 SNP Silent 16 72164214 C G 29 54 BRCA TCGA-BH-A0AW DNAH9 SNP Missense_Mutation 17 11672535 G A 47 100 BRCA TCGA-BH-A0AW SMYD4 SNP Silent 17 1703215 C T 31 50 BRCA TCGA-BH-A0AW RAB11FIP4 SNP Nonsense_Mutation 17 29858682 C T 25 98 BRCA TCGA-BH-A0AW LPO SNP Nonsense_Mutation 17 56329630 A T 5 46 BRCA TCGA-BH-A0AW USP32 SNP Missense_Mutation 17 58292120 G A 39 100 BRCA TCGA-BH-A0AW TP53 SNP Missense_Mutation 17 7577129 A G 1 73 BRCA TCGA-BH-A0AW AZI1 SNP Splice_site 17 79168770 C G 32 55 BRCA TCGA-BH-A0AW RNF138 SNP Missense_Mutation 18 29691779 G A 40 86 BRCA TCGA-BH-A0AW TPGS2 SNP Silent 18 34380248 G C 45 99 BRCA TCGA-BH-A0AW ZNF236 SNP Silent 18 74625817 C T 24 55 BRCA TCGA-BH-A0AW RALBP1 SNP Silent 18 9533749 C T 27 41 BRCA TCGA-BH-A0AW SWSAP1 SNP Missense_Mutation 19 11486225 C T 28 78 BRCA TCGA-BH-A0AW ZNF440 SNP Missense_Mutation 19 11943231 C G 25 83 BRCA TCGA-BH-A0AW PRKACA SNP Silent 19 14213652 G A 37 50 BRCA TCGA-BH-A0AW ZNF253 SNP Silent 19 20002371 C T 25 59 BRCA TCGA-BH-A0AW ZNF429 SNP Missense_Mutation 19 21719844 G A 34 45 BRCA TCGA-BH-A0AW CYP2S1 SNP Missense_Mutation 19 41703830 G A 33 42 BRCA TCGA-BH-A0AW PLEKHA4 SNP Silent 19 49364911 G A 37 49 BRCA TCGA-BH-A0AW MYH14 SNP Silent 19 50753840 G A 40 52 BRCA TCGA-BH-A0AW ETFB SNP Missense_Mutation 19 51848506 C T 29 74 BRCA TCGA-BH-A0AW ZNF578 SNP Missense_Mutation 19 53014007 C A 21 47 BRCA TCGA-BH-A0AW ZNF776 SNP Missense_Mutation 19 58265573 C T 29 51 BRCA TCGA-BH-A0AW MUC16 SNP Missense_Mutation 19 9067623 G A 37 60 BRCA TCGA-BH-A0AW ZNF562 SNP Missense_Mutation 19 9764242 G C 45 82 BRCA TCGA-BH-A0AW RGPD4 SNP Silent 2 108487659 C T 20 55 BRCA TCGA-BH-A0AW TTN SNP Silent 2 179612700 C T 21 48 BRCA TCGA-BH-A0AW COL5A2 SNP Missense_Mutation 2 189950468 C T 29 89 BRCA TCGA-BH-A0AW ANKAR SNP Nonsense_Mutation 2 190569785 C G 29 88 BRCA TCGA-BH-A0AW CTLA4 SNP Missense_Mutation 2 204737449 C G 32 81 BRCA TCGA-BH-A0AW APOB DEL Frame_Shift_Del 2 21232581 TTATC - 64 59 BRCA TCGA-BH-A0AW SH3BP4 SNP Silent 2 235951351 G A 37 41 BRCA TCGA-BH-A0AW ITSN2 DEL Frame_Shift_Del 2 24469072 T - 54 93 BRCA TCGA-BH-A0AW DNAJC27 SNP Nonsense_Mutation 2 25180735 C A 32 97 BRCA TCGA-BH-A0AW CGREF1 SNP Silent 2 27324340 G A 39 37 BRCA TCGA-BH-A0AW ASAP2 SNP Silent 2 9531255 C T 26 86 BRCA TCGA-BH-A0AW CSE1L DEL In_Frame_Del 20 47691354 GAG - 45 98 BRCA TCGA-BH-A0AW SPATA2 SNP Missense_Mutation 20 48523073 C G 32 84 BRCA TCGA-BH-A0AW ADRM1 SNP Missense_Mutation 20 60878683 A G 2 52 BRCA TCGA-BH-A0AW LAMA5 SNP Missense_Mutation 20 60900388 C T 23 49 BRCA TCGA-BH-A0AW PLCB1 SNP Splice_Site 20 8769095 G C 34 97 BRCA TCGA-BH-A0AW APP SNP Missense_Mutation 21 27354686 C G 29 97 BRCA TCGA-BH-A0AW TIAM1 SNP Nonsense_Mutation 21 32492859 G A 45 62 BRCA TCGA-BH-A0AW SCAF4 SNP Silent 21 33073365 T C 60 46 BRCA TCGA-BH-A0AW DSCAM SNP Silent 21 41710062 G C 33 54 BRCA TCGA-BH-A0AW CECR5 SNP Silent 22 17619469 G A 39 36 BRCA TCGA-BH-A0AW PRAME SNP Nonsense_Mutation 22 22892667 G C 45 56 BRCA TCGA-BH-A0AW GTPBP1 SNP Nonstop_Mutation 22 39111931 G C 45 57 BRCA TCGA-BH-A0AW SERPINA7 SNP Nonsense_Mutation 23 105278294 G A 45 50 BRCA TCGA-BH-A0AW STAG2 SNP Missense_Mutation 23 123224532 C T 26 79 BRCA TCGA-BH-A0AW BCORL1 SNP Missense_Mutation 23 129147805 C T 30 61 BRCA TCGA-BH-A0AW PASD1 SNP Silent 23 150780207 T A 54 52 BRCA TCGA-BH-A0AW RAI2 SNP Missense_Mutation 23 17818739 T G 64 55 BRCA TCGA-BH-A0AW MAP7D2 SNP Silent 23 20030640 C T 29 59 BRCA TCGA-BH-A0AW PHF8 SNP Silent 23 54069105 G A 45 73 BRCA TCGA-BH-A0AW ZCCHC13 SNP Silent 23 73524431 G A 33 57 BRCA TCGA-BH-A0AW SLC12A8 SNP Silent 3 124826851 C T 29 73 BRCA TCGA-BH-A0AW TMCC1 SNP Missense_Mutation 3 129389511 G C 36 83 BRCA TCGA-BH-A0AW HPS3 SNP Missense_Mutation 3 148871407 G C 33 94 BRCA TCGA-BH-A0AW B3GALNT1 SNP Missense_Mutation 3 160804170 C G 30 60 BRCA TCGA-BH-A0AW WDR49 DEL Frame_Shift_Del 3 167277905 G - 35 56 BRCA TCGA-BH-A0AW LRRIQ4 SNP Missense_Mutation 3 169539922 G C 33 53 BRCA TCGA-BH-A0AW ECT2 SNP Missense_Mutation 3 172534566 G A 33 64 BRCA TCGA-BH-A0AW GOLGA4 SNP Missense_Mutation 3 37357021 G A 45 85 BRCA TCGA-BH-A0AW COL7A1 SNP Missense_Mutation 3 48612531 C T 30 79 BRCA TCGA-BH-A0AW GBE1 SNP Missense_Mutation 3 81584455 C T 29 83 BRCA TCGA-BH-A0AW DCBLD2 SNP Silent 3 98518306 G A 40 22 BRCA TCGA-BH-A0AW MTTP SNP Silent 4 100521863 C G 21 48 BRCA TCGA-BH-A0AW ZNF827 SNP Missense_Mutation 4 146807106 C T 30 86 BRCA TCGA-BH-A0AW ZNF718 SNP Missense_Mutation 4 155296 A T 3 52 BRCA TCGA-BH-A0AW PAM SNP Missense_Mutation 5 102237088 G C 37 66 BRCA TCGA-BH-A0AW CCT5 SNP Missense_Mutation 5 10261724 C T 17 99 BRCA TCGA-BH-A0AW HSD17B4 SNP Missense_Mutation 5 118835111 C G 30 92 BRCA TCGA-BH-A0AW PHF15 SNP Missense_Mutation 5 133901983 G A 42 62 BRCA TCGA-BH-A0AW NDUFA2 SNP Missense_Mutation 5 140025248 G C 40 56 BRCA TCGA-BH-A0AW PCDHGA9 SNP Silent 5 140783647 C T 23 22 BRCA TCGA-BH-A0AW TRIO SNP Silent 5 14399176 G A 48 54 BRCA TCGA-BH-A0AW COL23A1 SNP Missense_Mutation 5 177695751 G A 41 75 BRCA TCGA-BH-A0AW IL7R SNP Missense_Mutation 5 35867545 A C 1 44 BRCA TCGA-BH-A0AW TRIP13 SNP Missense_Mutation 5 914588 C G 29 65 BRCA TCGA-BH-A0AW MAK SNP Missense_Mutation 6 10802211 G C 33 88 BRCA TCGA-BH-A0AW HIVEP1 SNP Missense_Mutation 6 12121958 G A 38 100 BRCA TCGA-BH-A0AW UTRN SNP Missense_Mutation 6 145075868 G A 45 93 BRCA TCGA-BH-A0AW SYNE1 SNP Missense_Mutation 6 152655294 T A 64 63 BRCA TCGA-BH-A0AW OR12D3 SNP Missense_Mutation 6 29342398 G C 35 49 BRCA TCGA-BH-A0AW TRIM10 SNP Missense_Mutation 6 30124770 G A 37 68 BRCA TCGA-BH-A0AW SRPK1 SNP Missense_Mutation 6 35838268 C G 29 62 BRCA TCGA-BH-A0AW COL12A1 SNP Silent 6 75833788 T C 55 47 BRCA TCGA-BH-A0AW COL12A1 SNP Silent 6 75893166 G A 45 51 BRCA TCGA-BH-A0AW C7orf58 SNP Missense_Mutation 7 120876775 G C 44 71 BRCA TCGA-BH-A0AW TNPO3 SNP Missense_Mutation 7 128658066 G A 45 84 BRCA TCGA-BH-A0AW CPA1 SNP Missense_Mutation 7 130023271 G A 37 96 BRCA TCGA-BH-A0AW TRPV6 SNP Silent 7 142573242 G C 33 49 BRCA TCGA-BH-A0AW CARD11 SNP Silent 7 2979469 G T 37 83 BRCA TCGA-BH-A0AW PKD1L1 SNP Missense_Mutation 7 47897385 G A 39 53 BRCA TCGA-BH-A0AW SBDS DEL In_Frame_Del 7 66453378 CTT - 24 78 BRCA TCGA-BH-A0AW ABCB4 SNP Missense_Mutation 7 87051523 C T 29 61 BRCA TCGA-BH-A0AW TG SNP Missense_Mutation 8 133899016 C G 20 74 BRCA TCGA-BH-A0AW KCNK9 DEL Frame_Shift_Del 8 140631236 CTCGCCCAGGCTCTGGAACA - 28 71 BRCA TCGA-BH-A0AW EBF2 SNP Missense_Mutation 8 25715895 A C 3 70 BRCA TCGA-BH-A0AW TEX15 SNP Silent 8 30700081 G A 34 54 BRCA TCGA-BH-A0AW HGSNAT SNP Missense_Mutation 8 43047544 G A 37 52 BRCA TCGA-BH-A0AW DEFA4 SNP Missense_Mutation 8 6793615 C T 31 40 BRCA TCGA-BH-A0AW ZFHX4 DEL Frame_Shift_Del 8 77764171 AAAA - 13 89 BRCA TCGA-BH-A0AW PAG1 SNP Missense_Mutation 8 81897162 A G 14 56 BRCA TCGA-BH-A0AW DECR1 SNP Splice_site 8 91029554 G C 39 86 BRCA TCGA-BH-A0AW PDP1 SNP Nonsense_Mutation 8 94934414 C T 31 82 BRCA TCGA-BH-A0AW CPQ SNP Missense_Mutation 8 97797310 G C 33 96 BRCA TCGA-BH-A0AW STX17 SNP Silent 9 102713416 G A 33 55 BRCA TCGA-BH-A0AW STXBP1 SNP Missense_Mutation 9 130423461 G A 46 97 BRCA TCGA-BH-A0AW ZNF658 SNP Missense_Mutation 9 40774338 T A 59 50 BRCA TCGA-BH-A0AW DOCK8 SNP Missense_Mutation 9 434905 C G 27 99 BRCA TCGA-BH-A0AW JAK2 SNP Missense_Mutation 9 5029900 G T 33 88 BRCA TCGA-BH-A0AW ZNF510 SNP Silent 9 99521783 C T 32 53 BRCA TCGA-BH-A0AY PDE4DIP SNP Silent 1 144904729 C T 29 63 BRCA TCGA-BH-A0AY ZNF687 DEL Frame_Shift_Del 1 151261880 AC - 10 89 BRCA TCGA-BH-A0AY POGK SNP Silent 1 166819226 G A 45 49 BRCA TCGA-BH-A0AY HMCN1 SNP Missense_Mutation 1 185833711 A C 14 78 BRCA TCGA-BH-A0AY TRIM67 SNP Silent 1 231344841 C T 19 49 BRCA TCGA-BH-A0AY TRIM67 SNP Missense_Mutation 1 231351163 C T 27 61 BRCA TCGA-BH-A0AY RPS6KA1 SNP Missense_Mutation 1 26885381 G A 37 86 BRCA TCGA-BH-A0AY WLS SNP Missense_Mutation 1 68624838 G C 40 61 BRCA TCGA-BH-A0AY DHTKD1 SNP Missense_Mutation 10 12129635 G A 48 64 BRCA TCGA-BH-A0AY MYO3A SNP Silent 10 26457784 C T 27 49 BRCA TCGA-BH-A0AY PPP3CB SNP Missense_Mutation 10 75204476 T A 50 64 BRCA TCGA-BH-A0AY BSX SNP Nonsense_Mutation 11 122850010 G A 40 59 BRCA TCGA-BH-A0AY RNF34 SNP Missense_Mutation 12 121858126 G A 38 46 BRCA TCGA-BH-A0AY MLXIP SNP Missense_Mutation 12 122614165 A G 7 73 BRCA TCGA-BH-A0AY TMEM132B SNP Silent 12 126004087 G T 37 14 BRCA TCGA-BH-A0AY PIWIL1 SNP Nonsense_Mutation 12 130833872 C T 31 70 BRCA TCGA-BH-A0AY PROSER1 SNP Missense_Mutation 13 39587641 C A 19 53 BRCA TCGA-BH-A0AY MEIS2 SNP Missense_Mutation 15 37184562 G A 43 80 BRCA TCGA-BH-A0AY VPS18 SNP Missense_Mutation 15 41192326 G A 40 55 BRCA TCGA-BH-A0AY CAPN3 SNP Silent 15 42652165 C T 31 33 BRCA TCGA-BH-A0AY IQCH SNP Missense_Mutation 15 67652219 G A 35 38 BRCA TCGA-BH-A0AY GDPGP1 SNP Missense_Mutation 15 90784778 C T 31 96 BRCA TCGA-BH-A0AY IFT140 DEL Frame_Shift_Del 16 1616239 TG - 55 25 BRCA TCGA-BH-A0AY EEF2K SNP Nonsense_Mutation 16 22291592 G T 45 98 BRCA TCGA-BH-A0AY CPAMD8 SNP Missense_Mutation 19 17014520 T C 58 85 BRCA TCGA-BH-A0AY GPR32 SNP Silent 19 51273962 G T 48 52 BRCA TCGA-BH-A0AY ANKRD57 SNP Silent 2 110373509 C T 31 68 BRCA TCGA-BH-A0AY ANKRD57 SNP Missense_Mutation 2 110373516 A G 6 75 BRCA TCGA-BH-A0AY SPP2 SNP Missense_Mutation 2 234959496 G T 45 55 BRCA TCGA-BH-A0AY DPYSL5 SNP Silent 2 27167565 G A 43 64 BRCA TCGA-BH-A0AY C2orf71 SNP Silent 2 29293783 C T 17 47 BRCA TCGA-BH-A0AY EDA2R SNP Silent 23 65819449 C T 21 55 BRCA TCGA-BH-A0AY OGT SNP Missense_Mutation 23 70767782 C T 19 97 BRCA TCGA-BH-A0AY DIAPH2 SNP Missense_Mutation 23 95993637 T G 56 87 BRCA TCGA-BH-A0AY POLQ SNP Missense_Mutation 3 121207015 G A 35 50 BRCA TCGA-BH-A0AY ABHD6 SNP Missense_Mutation 3 58253048 G C 35 62 BRCA TCGA-BH-A0AY PCDHA8 SNP Missense_Mutation 5 140222893 G A 42 67 BRCA TCGA-BH-A0AY GRIA1 SNP Missense_Mutation 5 153149914 G A 44 98 BRCA TCGA-BH-A0AY PDZD2 SNP Missense_Mutation 5 32088295 C T 31 62 BRCA TCGA-BH-A0AY IPCEF1 SNP Missense_Mutation 6 154481152 C G 29 58 BRCA TCGA-BH-A0AY TRIM24 SNP Missense_Mutation 7 138189074 C G 25 69 BRCA TCGA-BH-A0AY PURB SNP Missense_Mutation 7 44924384 C A 28 56 BRCA TCGA-BH-A0AY BAZ1B SNP Missense_Mutation 7 72925144 A T 4 88 BRCA TCGA-BH-A0AY FGL2 SNP Missense_Mutation 7 76825930 C T 19 99 BRCA TCGA-BH-A0AY WDYHV1 SNP Splice_site 8 124448694 A T 12 84 BRCA TCGA-BH-A0AY PTPRD DNP Missense_Mutation 9 8341726 TC GG 54 60 BRCA TCGA-BH-A0AZ PDE4DIP SNP Missense_Mutation 1 144882723 T G 55 64 BRCA TCGA-BH-A0AZ IGSF8 SNP Missense_Mutation 1 160064882 A C 16 42 BRCA TCGA-BH-A0AZ RXRG SNP Silent 1 165398094 T G 59 46 BRCA TCGA-BH-A0AZ EDEM3 SNP Splice_site 1 184681731 T G 52 80 BRCA TCGA-BH-A0AZ KIF17 SNP Missense_Mutation 1 21009211 C T 19 81 BRCA TCGA-BH-A0AZ RAB3GAP2 SNP Missense_Mutation 1 220355687 A C 1 92 BRCA TCGA-BH-A0AZ PTPRU SNP Nonsense_Mutation 1 29652166 C A 29 56 BRCA TCGA-BH-A0AZ CYP4X1 SNP Silent 1 47505115 C A 30 70 BRCA TCGA-BH-A0AZ RPAP2 SNP Silent 1 92789908 C T 21 51 BRCA TCGA-BH-A0AZ CUBN DEL Frame_Shift_Del 10 16893319 ACAG - 14 53 BRCA TCGA-BH-A0AZ GATA3 INS Frame_Shift_Ins 10 8115982 - T 44 100 BRCA TCGA-BH-A0AZ OR8H2 SNP Missense_Mutation 11 55872586 A G 11 49 BRCA TCGA-BH-A0AZ CIT SNP Missense_Mutation 12 120151420 G T 40 80 BRCA TCGA-BH-A0AZ MLXIP SNP Missense_Mutation 12 122617979 C G 29 67 BRCA TCGA-BH-A0AZ DDX11 SNP Missense_Mutation 12 31256888 G A 33 47 BRCA TCGA-BH-A0AZ LRIG3 SNP Missense_Mutation 12 59283825 G C 33 51 BRCA TCGA-BH-A0AZ TEX26 SNP Missense_Mutation 13 31543174 T C 62 58 BRCA TCGA-BH-A0AZ CHD8 SNP Missense_Mutation 14 21862192 G T 43 98 BRCA TCGA-BH-A0AZ LRRC16B SNP Missense_Mutation 14 24538364 G A 39 75 BRCA TCGA-BH-A0AZ HERC1 SNP Missense_Mutation 15 64017562 T A 62 92 BRCA TCGA-BH-A0AZ ULK2 SNP Silent 17 19700727 G A 45 64 BRCA TCGA-BH-A0AZ KRTAP9-7 SNP Missense_Mutation 17 39432019 G A 48 51 BRCA TCGA-BH-A0AZ KPNB1 SNP Splice_site 17 45754386 G C 44 99 BRCA TCGA-BH-A0AZ CACNA1G SNP Silent 17 48668853 C A 26 57 BRCA TCGA-BH-A0AZ CLEC10A SNP Missense_Mutation 17 6978532 C A 28 35 BRCA TCGA-BH-A0AZ MAN2B1 SNP Splice_site 19 12768878 G C 45 57 BRCA TCGA-BH-A0AZ MAN2B1 SNP Missense_Mutation 19 12769137 G C 33 67 BRCA TCGA-BH-A0AZ MAN2B1 SNP Silent 19 12769247 G A 45 66 BRCA TCGA-BH-A0AZ PGLS SNP Splice_site 19 17627089 G A 35 59 BRCA TCGA-BH-A0AZ ZNF526 SNP Missense_Mutation 19 42728940 G A 46 53 BRCA TCGA-BH-A0AZ ERF SNP Silent 19 42753286 G A 45 58 BRCA TCGA-BH-A0AZ BCAT2 SNP Silent 19 49310293 C G 17 53 BRCA TCGA-BH-A0AZ MUC16 SNP Missense_Mutation 19 9091544 A G 11 45 BRCA TCGA-BH-A0AZ RIF1 SNP Missense_Mutation 2 152299782 G A 34 78 BRCA TCGA-BH-A0AZ DCAF17 SNP Missense_Mutation 2 172336674 A C 3 90 BRCA TCGA-BH-A0AZ PRDM15 DEL Frame_Shift_Del 21 43291676 C - 30 46 BRCA TCGA-BH-A0AZ TEX33 DEL Splice_Site 22 37387521 C - 18 76 BRCA TCGA-BH-A0AZ ARFGAP3 SNP Splice_Site 22 43227644 T G 55 74 BRCA TCGA-BH-A0AZ ODZ1 SNP Missense_Mutation 23 123630873 C T 30 99 BRCA TCGA-BH-A0AZ LAS1L SNP Missense_Mutation 23 64734716 T A 60 46 BRCA TCGA-BH-A0AZ NR2C2 SNP Silent 3 15065706 G A 39 40 BRCA TCGA-BH-A0AZ DLG1 SNP Missense_Mutation 3 196857476 C A 29 96 BRCA TCGA-BH-A0AZ BBS7 SNP Missense_Mutation 4 122776652 C A 30 74 BRCA TCGA-BH-A0AZ MMAA SNP Missense_Mutation 4 146560633 G T 41 86 BRCA TCGA-BH-A0AZ SEC31A SNP Missense_Mutation 4 83795849 G A 46 99 BRCA TCGA-BH-A0AZ NIPAL4 SNP Missense_Mutation 5 156899862 C A 22 75 BRCA TCGA-BH-A0AZ PLK2 DEL Frame_Shift_Del 5 57751437 GTACCCAAAGCCATAT - 44 60 BRCA TCGA-BH-A0AZ ERBB2IP SNP Missense_Mutation 5 65372231 G A 45 94 BRCA TCGA-BH-A0AZ KIAA1919 SNP Missense_Mutation 6 111587599 T G 63 52 BRCA TCGA-BH-A0AZ SASH1 SNP Silent 6 148867225 C T 31 42 BRCA TCGA-BH-A0AZ JARID2 SNP Missense_Mutation 6 15374373 C T 29 95 BRCA TCGA-BH-A0AZ IGF2R SNP Silent 6 160500677 A G 11 34 BRCA TCGA-BH-A0AZ TRIM38 SNP Missense_Mutation 6 25973465 G T 48 61 BRCA TCGA-BH-A0AZ MCM4 SNP Missense_Mutation 8 48878885 A T 11 90 BRCA TCGA-BH-A0AZ SLCO5A1 SNP Missense_Mutation 8 70585135 T C 54 59 BRCA TCGA-BH-A0AZ OR13C8 SNP Missense_Mutation 9 107331596 A G 8 48 BRCA TCGA-BH-A0B0 SFT2D2 SNP Silent 1 168204351 C T 29 59 BRCA TCGA-BH-A0B0 HSD11B1 SNP Missense_Mutation 1 209880330 C G 32 57 BRCA TCGA-BH-A0B0 GPATCH2 SNP Missense_Mutation 1 217688186 A T 9 62 BRCA TCGA-BH-A0B0 OR2L5 SNP Silent 1 248185879 C T 29 51 BRCA TCGA-BH-A0B0 FOXD3 SNP Missense_Mutation 1 63788817 G A 37 76 BRCA TCGA-BH-A0B0 CYP2C9 SNP Missense_Mutation 10 96740960 G A 45 69 BRCA TCGA-BH-A0B0 AASDHPPT SNP Missense_Mutation 11 105962115 C G 32 52 BRCA TCGA-BH-A0B0 GCN1L1 SNP Silent 12 120567110 G C 45 55 BRCA TCGA-BH-A0B0 DNAJC14 SNP Missense_Mutation 12 56221997 G A 33 77 BRCA TCGA-BH-A0B0 VWF SNP Silent 12 6125319 G T 45 49 BRCA TCGA-BH-A0B0 LRRIQ1 SNP Missense_Mutation 12 85449856 G A 45 51 BRCA TCGA-BH-A0B0 TOX4 SNP Missense_Mutation 14 21955713 A T 12 68 BRCA TCGA-BH-A0B0 ADAMTS7 SNP Silent 15 79090438 G A 33 48 BRCA TCGA-BH-A0B0 RASGRF1 SNP Nonsense_Mutation 15 79317805 G A 45 92 BRCA TCGA-BH-A0B0 C16orf59 SNP Silent 16 2510938 G A 45 74 BRCA TCGA-BH-A0B0 STAT3 SNP Missense_Mutation 17 40481441 C T 31 100 BRCA TCGA-BH-A0B0 TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-BH-A0B0 MYH10 SNP Missense_Mutation 17 8397132 C A 32 77 BRCA TCGA-BH-A0B0 CALR3 SNP Missense_Mutation 19 16601357 C T 31 74 BRCA TCGA-BH-A0B0 MUC16 SNP Missense_Mutation 19 9091474 G C 33 56 BRCA TCGA-BH-A0B0 TTLL4 SNP Missense_Mutation 2 219619083 A T 7 54 BRCA TCGA-BH-A0B0 CHMP3 SNP Missense_Mutation 2 86769398 C T 32 77 BRCA TCGA-BH-A0B0 NOP56 SNP Missense_Mutation 20 2636074 G A 45 97 BRCA TCGA-BH-A0B0 EBF4 SNP Missense_Mutation 20 2736401 G A 38 92 BRCA TCGA-BH-A0B0 FITM2 SNP Silent 20 42935837 G A 33 68 BRCA TCGA-BH-A0B0 RPS10L SNP Missense_Mutation 20 820161 C A 21 77 BRCA TCGA-BH-A0B0 LARGE SNP Missense_Mutation 22 33670562 G A 45 100 BRCA TCGA-BH-A0B0 NXF5 SNP Missense_Mutation 23 101097746 C G 32 50 BRCA TCGA-BH-A0B0 RAB33A SNP Missense_Mutation 23 129318409 G A 47 72 BRCA TCGA-BH-A0B0 RAB39B SNP Missense_Mutation 23 154490356 C T 17 93 BRCA TCGA-BH-A0B0 HUWE1 SNP Missense_Mutation 23 53589797 C T 31 98 BRCA TCGA-BH-A0B0 ATRX SNP Missense_Mutation 23 76813032 G A 38 79 BRCA TCGA-BH-A0B0 COPG1 SNP Missense_Mutation 3 128976344 G A 40 96 BRCA TCGA-BH-A0B0 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-BH-A0B0 EIF2B5 SNP Silent 3 183856022 C T 32 86 BRCA TCGA-BH-A0B0 ZNF589 SNP Silent 3 48309446 C T 32 51 BRCA TCGA-BH-A0B0 TGFBI SNP Silent 5 135389690 C T 29 52 BRCA TCGA-BH-A0B0 KIAA0141 SNP Silent 5 141309823 C T 31 49 BRCA TCGA-BH-A0B0 IL17B SNP Silent 5 148754037 C T 24 65 BRCA TCGA-BH-A0B0 BRIX1 SNP Silent 5 34915891 G A 37 49 BRCA TCGA-BH-A0B0 ADAMTS16 SNP Silent 5 5262783 G A 45 16 BRCA TCGA-BH-A0B0 IGF2R SNP Missense_Mutation 6 160494353 C T 30 79 BRCA TCGA-BH-A0B0 HIST1H2AG SNP Missense_Mutation 6 27100867 A G 3 85 BRCA TCGA-BH-A0B0 MMS22L SNP Missense_Mutation 6 97627350 T C 52 80 BRCA TCGA-BH-A0B0 FBXL13 SNP Splice_site 7 102453790 C G 29 49 BRCA TCGA-BH-A0B0 RADIL INS In_Frame_Ins 7 4843213 - CTGCCAGGG 26 39 BRCA TCGA-BH-A0B0 AUTS2 SNP Silent 7 70254986 C T 23 53 BRCA TCGA-BH-A0B0 CLIP2 SNP Silent 7 73790402 G A 33 63 BRCA TCGA-BH-A0B0 KIF13B SNP Missense_Mutation 8 28999688 C T 29 83 BRCA TCGA-BH-A0B0 XKR4 SNP Missense_Mutation 8 56436760 C T 27 63 BRCA TCGA-BH-A0B0 ENSG00000188856 SNP Silent 8 81471356 G A 33 70 BRCA TCGA-BH-A0B0 TMEM38B SNP Missense_Mutation 9 108483865 C T 29 60 BRCA TCGA-BH-A0B0 SVEP1 SNP Missense_Mutation 9 113166798 C G 32 76 BRCA TCGA-BH-A0B0 NTMT1 SNP Silent 9 132397668 C T 29 54 BRCA TCGA-BH-A0B0 IL33 SNP Missense_Mutation 9 6252967 G A 33 64 BRCA TCGA-BH-A0B1 KIAA0907 SNP Silent 1 155886454 C T 28 60 BRCA TCGA-BH-A0B1 RAB25 SNP Missense_Mutation 1 156038083 G A 42 97 BRCA TCGA-BH-A0B1 OR2T4 SNP Missense_Mutation 1 248525348 G A 40 50 BRCA TCGA-BH-A0B1 TMEM48 SNP Missense_Mutation 1 54293701 A C 9 45 BRCA TCGA-BH-A0B1 ITGB1 SNP Missense_Mutation 10 33217124 T G 49 94 BRCA TCGA-BH-A0B1 C10orf107 SNP Missense_Mutation 10 63519916 A C 6 50 BRCA TCGA-BH-A0B1 TRAF6 SNP Missense_Mutation 11 36518753 T C 64 76 BRCA TCGA-BH-A0B1 OR4C12 SNP Missense_Mutation 11 50003457 C T 18 73 BRCA TCGA-BH-A0B1 ATG16L2 SNP Missense_Mutation 11 72537859 C T 23 62 BRCA TCGA-BH-A0B1 ARHGEF17 SNP Nonsense_Mutation 11 73064010 C T 25 71 BRCA TCGA-BH-A0B1 RPH3A SNP Missense_Mutation 12 113314581 G T 46 74 BRCA TCGA-BH-A0B1 GRIN2B SNP Missense_Mutation 12 13722814 G A 33 100 BRCA TCGA-BH-A0B1 PLCZ1 SNP Silent 12 18876408 C T 27 49 BRCA TCGA-BH-A0B1 DDX12 SNP Silent 12 9584962 C T 24 82 BRCA TCGA-BH-A0B1 RASGRP1 SNP Silent 15 38805032 C T 27 55 BRCA TCGA-BH-A0B1 MAP1A SNP Missense_Mutation 15 43818899 G A 39 57 BRCA TCGA-BH-A0B1 TPM1 DEL Frame_Shift_Del 15 63336291 C - 20 71 BRCA TCGA-BH-A0B1 SYT17 DEL In_Frame_Del 16 19195122 ACCGTGCGCGTG - 6 59 BRCA TCGA-BH-A0B1 ACSM5 SNP Missense_Mutation 16 20442596 G A 40 49 BRCA TCGA-BH-A0B1 B4GALNT2 SNP Silent 17 47236488 C A 29 56 BRCA TCGA-BH-A0B1 MAPK4 SNP Missense_Mutation 18 48190626 G A 40 58 BRCA TCGA-BH-A0B1 SERPINB7 SNP Silent 18 61463607 T C 51 50 BRCA TCGA-BH-A0B1 WDR62 SNP Missense_Mutation 19 36584983 G A 41 75 BRCA TCGA-BH-A0B1 ZNF227 SNP Silent 19 44738970 G A 44 48 BRCA TCGA-BH-A0B1 HSPD1 SNP Missense_Mutation 2 198352668 T G 49 45 BRCA TCGA-BH-A0B1 PIKFYVE SNP Silent 2 209190253 C T 19 50 BRCA TCGA-BH-A0B1 ABCA12 SNP Missense_Mutation 2 215813332 C G 24 46 BRCA TCGA-BH-A0B1 TTC15 SNP Silent 2 3428379 T C 63 47 BRCA TCGA-BH-A0B1 POLR1A SNP Missense_Mutation 2 86258493 T C 50 69 BRCA TCGA-BH-A0B1 PCNT SNP Missense_Mutation 21 47754627 G A 40 44 BRCA TCGA-BH-A0B1 FAM47A SNP Missense_Mutation 23 34148841 A G 11 40 BRCA TCGA-BH-A0B1 TATDN2 SNP Silent 3 10301826 T C 52 71 BRCA TCGA-BH-A0B1 RUVBL1 SNP Missense_Mutation 3 127784062 A C 10 46 BRCA TCGA-BH-A0B1 OR5K2 SNP Missense_Mutation 3 98216663 G A 42 41 BRCA TCGA-BH-A0B1 CLNK SNP Missense_Mutation 4 10527514 G T 45 60 BRCA TCGA-BH-A0B1 SEC24B SNP Missense_Mutation 4 110442693 C G 23 87 BRCA TCGA-BH-A0B1 KIAA1109 SNP Missense_Mutation 4 123193467 C T 23 87 BRCA TCGA-BH-A0B1 GUCY1A3 SNP Missense_Mutation 4 156618138 G T 46 54 BRCA TCGA-BH-A0B1 GPR125 SNP Missense_Mutation 4 22390729 C A 20 85 BRCA TCGA-BH-A0B1 FIP1L1 SNP Silent 4 54319224 C A 31 75 BRCA TCGA-BH-A0B1 TIGD2 SNP Missense_Mutation 4 90035623 C A 32 56 BRCA TCGA-BH-A0B1 NREP SNP Missense_Mutation 5 111066712 C T 27 87 BRCA TCGA-BH-A0B1 PCDHA5 SNP Missense_Mutation 5 140202966 G A 38 95 BRCA TCGA-BH-A0B1 GABRB2 SNP Missense_Mutation 5 160753407 G A 40 60 BRCA TCGA-BH-A0B1 GABRA1 SNP Missense_Mutation 5 161281210 G A 48 75 BRCA TCGA-BH-A0B1 ITGA2 SNP Missense_Mutation 5 52382807 C T 19 55 BRCA TCGA-BH-A0B1 MAP7 DEL Frame_Shift_Del 6 136686953 A - 15 51 BRCA TCGA-BH-A0B1 C6orf10 SNP Missense_Mutation 6 32298378 G T 41 52 BRCA TCGA-BH-A0B1 DNAH8 SNP Missense_Mutation 6 38897434 A C 6 55 BRCA TCGA-BH-A0B1 RBM33 SNP Missense_Mutation 7 155493674 C G 32 43 BRCA TCGA-BH-A0B1 HEATR2 SNP Silent 7 810169 C T 24 39 BRCA TCGA-BH-A0B1 TFPI2 DEL Frame_Shift_Del 7 93518420 C - 18 21 BRCA TCGA-BH-A0B1 DENND3 SNP Missense_Mutation 8 142161880 G A 42 98 BRCA TCGA-BH-A0B1 STRBP SNP Silent 9 125923337 C T 31 60 BRCA TCGA-BH-A0B1 SARDH SNP Silent 9 136594964 G T 39 48 BRCA TCGA-BH-A0B1 IFNA7 SNP Nonsense_Mutation 9 21201826 G T 44 48 BRCA TCGA-BH-A0B1 TRPM6 SNP Silent 9 77423061 G T 35 33 BRCA TCGA-BH-A0B3 CSMD2 SNP Missense_Mutation 1 34042946 C T 23 69 BRCA TCGA-BH-A0B3 RLF SNP Silent 1 40654738 A G 4 51 BRCA TCGA-BH-A0B3 SEPHS1 SNP Missense_Mutation 10 13386865 G A 48 81 BRCA TCGA-BH-A0B3 MMP27 SNP Missense_Mutation 11 102575447 C G 32 55 BRCA TCGA-BH-A0B3 DTX4 SNP Nonsense_Mutation 11 58967208 C T 19 53 BRCA TCGA-BH-A0B3 FAT3 SNP Silent 11 92531859 C T 32 72 BRCA TCGA-BH-A0B3 NOS1 SNP Missense_Mutation 12 117723956 G A 38 51 BRCA TCGA-BH-A0B3 VWF SNP Silent 12 6134806 C A 31 45 BRCA TCGA-BH-A0B3 MKRN3 SNP Missense_Mutation 15 23811294 C T 32 53 BRCA TCGA-BH-A0B3 UNC13C SNP Missense_Mutation 15 54306670 A G 2 52 BRCA TCGA-BH-A0B3 ADAMTS18 DEL Frame_Shift_Del 16 77389899 GGTCA - 39 14 BRCA TCGA-BH-A0B3 FLJ40504 SNP Missense_Mutation 17 26603953 C A 32 62 BRCA TCGA-BH-A0B3 TP53 SNP Missense_Mutation 17 7578203 C T 17 96 BRCA TCGA-BH-A0B3 LPIN2 DEL Frame_Shift_Del 18 2939590 TGGGG - 55 67 BRCA TCGA-BH-A0B3 GPI SNP Missense_Mutation 19 34870465 A G 6 85 BRCA TCGA-BH-A0B3 NLRP7 SNP Missense_Mutation 19 55450913 G A 38 51 BRCA TCGA-BH-A0B3 ZEB2 SNP Missense_Mutation 2 145147116 C T 32 88 BRCA TCGA-BH-A0B3 SCN2A SNP Missense_Mutation 2 166246050 A T 16 93 BRCA TCGA-BH-A0B3 SCN7A SNP Missense_Mutation 2 167298131 G T 37 49 BRCA TCGA-BH-A0B3 PRKRA SNP Missense_Mutation 2 179300974 A T 3 53 BRCA TCGA-BH-A0B3 SLC1A4 SNP Silent 2 65245352 G A 38 50 BRCA TCGA-BH-A0B3 TFAP2C SNP Missense_Mutation 20 55208476 G A 45 51 BRCA TCGA-BH-A0B3 AFF2 SNP Nonsense_Mutation 23 147743942 G T 33 74 BRCA TCGA-BH-A0B3 DMD SNP Missense_Mutation 23 32662397 G A 39 61 BRCA TCGA-BH-A0B3 KIF4A SNP Missense_Mutation 23 69623828 A T 12 68 BRCA TCGA-BH-A0B3 EIF4G1 SNP Missense_Mutation 3 184042726 C T 27 100 BRCA TCGA-BH-A0B3 RPL29 INS In_Frame_Ins 3 52027853 - CCTTGG 50 53 BRCA TCGA-BH-A0B3 SNCAIP SNP Silent 5 121786792 C A 21 53 BRCA TCGA-BH-A0B3 PCDHGB3 SNP Missense_Mutation 5 140750987 C A 17 55 BRCA TCGA-BH-A0B3 PCDHGB3 SNP Silent 5 140751317 C T 30 64 BRCA TCGA-BH-A0B3 OR2V2 SNP Missense_Mutation 5 180582416 G C 45 57 BRCA TCGA-BH-A0B3 ATXN1 SNP Missense_Mutation 6 16328222 G A 42 96 BRCA TCGA-BH-A0B3 HIST1H2AD SNP Silent 6 26199318 G A 33 83 BRCA TCGA-BH-A0B3 TMEM106B SNP Splice_Site 7 12258148 G A 40 96 BRCA TCGA-BH-A0B3 GIMAP8 SNP Missense_Mutation 7 150164402 A G 2 54 BRCA TCGA-BH-A0B3 ABL1 SNP Missense_Mutation 9 133755477 C A 18 53 BRCA TCGA-BH-A0B3 KCNT1 DEL Frame_Shift_Del 9 138683996 AC - 10 89 BRCA TCGA-BH-A0B4 PTPN22 SNP Missense_Mutation 1 114372309 C G 32 50 BRCA TCGA-BH-A0B4 TCHHL1 SNP Missense_Mutation 1 152058657 C A 32 66 BRCA TCGA-BH-A0B4 PEAR1 SNP Missense_Mutation 1 156874586 C G 28 51 BRCA TCGA-BH-A0B4 SPOCD1 SNP Missense_Mutation 1 32279706 G A 45 54 BRCA TCGA-BH-A0B4 ZNF25 SNP Missense_Mutation 10 38241444 C G 28 71 BRCA TCGA-BH-A0B4 SORBS1 SNP Missense_Mutation 10 97141537 C T 32 99 BRCA TCGA-BH-A0B4 OR8H2 SNP Missense_Mutation 11 55873365 C T 30 70 BRCA TCGA-BH-A0B4 TRAFD1 SNP Missense_Mutation 12 112580087 A T 7 51 BRCA TCGA-BH-A0B4 DENND5B SNP Missense_Mutation 12 31542280 T A 50 61 BRCA TCGA-BH-A0B4 ADAMTS20 SNP Missense_Mutation 12 43837653 G A 46 96 BRCA TCGA-BH-A0B4 ASB8 SNP Missense_Mutation 12 48543359 T G 52 64 BRCA TCGA-BH-A0B4 SP7 SNP Missense_Mutation 12 53722555 A G 5 87 BRCA TCGA-BH-A0B4 SLC39A5 SNP Missense_Mutation 12 56625119 T C 55 53 BRCA TCGA-BH-A0B4 USP5 SNP Missense_Mutation 12 6971685 G T 36 56 BRCA TCGA-BH-A0B4 LRRC23 SNP Nonsense_Mutation 12 7019120 C T 31 63 BRCA TCGA-BH-A0B4 C12orf57 DEL Frame_Shift_Del 12 7053758 GCCA - 42 92 BRCA TCGA-BH-A0B4 C12orf57 INS Frame_Shift_Ins 12 7053762 - T 19 92 BRCA TCGA-BH-A0B4 ELF1 SNP Missense_Mutation 13 41533074 G C 33 54 BRCA TCGA-BH-A0B4 SLITRK6 DNP Missense_Mutation 13 86370546 GA AG 33 72 BRCA TCGA-BH-A0B4 DOCK9 SNP Missense_Mutation 13 99457383 C A 25 53 BRCA TCGA-BH-A0B4 MRPL52 SNP Missense_Mutation 14 23299300 G A 43 78 BRCA TCGA-BH-A0B4 BAZ1A SNP Missense_Mutation 14 35231037 G A 33 56 BRCA TCGA-BH-A0B4 UACA SNP Missense_Mutation 15 70971994 C A 32 81 BRCA TCGA-BH-A0B4 CD19 SNP Missense_Mutation 16 28944363 C T 23 35 BRCA TCGA-BH-A0B4 OVCA2 SNP Missense_Mutation 17 1946346 C G 28 71 BRCA TCGA-BH-A0B4 CCT6B SNP Missense_Mutation 17 33266704 C G 19 52 BRCA TCGA-BH-A0B4 AOC2 SNP Missense_Mutation 17 41002222 G T 41 99 BRCA TCGA-BH-A0B4 SP6 SNP Silent 17 45925220 C T 21 56 BRCA TCGA-BH-A0B4 GP1BA SNP Silent 17 4837210 A G 7 48 BRCA TCGA-BH-A0B4 RNF43 SNP Missense_Mutation 17 56434847 C A 18 63 BRCA TCGA-BH-A0B4 RPS6KB1 SNP Missense_Mutation 17 58009050 C G 24 76 BRCA TCGA-BH-A0B4 AFG3L2 SNP Missense_Mutation 18 12337422 T C 50 90 BRCA TCGA-BH-A0B4 CTAGE1 DEL Frame_Shift_Del 18 19996918 AGTTTCTTCAA - 7 56 BRCA TCGA-BH-A0B4 COL5A3 SNP Missense_Mutation 19 10097002 C G 28 57 BRCA TCGA-BH-A0B4 ZNF554 SNP Missense_Mutation 19 2834359 G A 47 86 BRCA TCGA-BH-A0B4 CYP2S1 SNP Splice_Site 19 41709354 G C 33 86 BRCA TCGA-BH-A0B4 CCDC155 SNP Missense_Mutation 19 49898468 G T 43 62 BRCA TCGA-BH-A0B4 MUC16 SNP Missense_Mutation 19 9008211 C T 26 53 BRCA TCGA-BH-A0B4 ARHGEF4 SNP Missense_Mutation 2 131688585 G T 42 53 BRCA TCGA-BH-A0B4 ICA1L SNP Missense_Mutation 2 203653586 C G 29 74 BRCA TCGA-BH-A0B4 FIGLA SNP Missense_Mutation 2 71012686 G T 44 50 BRCA TCGA-BH-A0B4 TRABD2A SNP Missense_Mutation 2 85051165 C T 31 54 BRCA TCGA-BH-A0B4 ANKRD36C SNP Missense_Mutation 2 96521508 G A 45 51 BRCA TCGA-BH-A0B4 VWA3B SNP Silent 2 98928512 G T 43 52 BRCA TCGA-BH-A0B4 SLC12A5 SNP Missense_Mutation 20 44665392 G A 42 96 BRCA TCGA-BH-A0B4 DCAF12L1 SNP Silent 23 125685704 G T 47 55 BRCA TCGA-BH-A0B4 PRPS2 SNP Missense_Mutation 23 12837706 G A 39 94 BRCA TCGA-BH-A0B4 TXLNG SNP Silent 23 16859739 C T 24 43 BRCA TCGA-BH-A0B4 PLCH1 SNP Missense_Mutation 3 155199904 C T 19 33 BRCA TCGA-BH-A0B4 SI SNP Missense_Mutation 3 164764723 G A 34 74 BRCA TCGA-BH-A0B4 LRRIQ4 SNP Silent 3 169540420 G A 39 17 BRCA TCGA-BH-A0B4 TNIK SNP Silent 3 170875423 C T 27 22 BRCA TCGA-BH-A0B4 SCN5A SNP Missense_Mutation 3 38655318 T C 60 88 BRCA TCGA-BH-A0B4 CX3CR1 SNP Missense_Mutation 3 39323136 C A 32 62 BRCA TCGA-BH-A0B4 KLHL18 SNP Missense_Mutation 3 47382093 A T 12 88 BRCA TCGA-BH-A0B4 KIAA1109 SNP Nonsense_Mutation 4 123159399 C T 17 82 BRCA TCGA-BH-A0B4 SEC31A SNP Missense_Mutation 4 83793139 C A 31 100 BRCA TCGA-BH-A0B4 GEMIN5 SNP Missense_Mutation 5 154284974 T C 51 49 BRCA TCGA-BH-A0B4 RNF145 SNP Missense_Mutation 5 158585971 C G 17 84 BRCA TCGA-BH-A0B4 C5orf42 SNP Missense_Mutation 5 37157925 G C 33 61 BRCA TCGA-BH-A0B4 GPR98 SNP Missense_Mutation 5 90059182 G T 48 54 BRCA TCGA-BH-A0B4 SYNE1 SNP Silent 6 152763222 T C 60 46 BRCA TCGA-BH-A0B4 HIST1H2BJ SNP Silent 6 27100194 C A 17 71 BRCA TCGA-BH-A0B4 TAS2R60 SNP Silent 7 143141397 G A 45 59 BRCA TCGA-BH-A0B4 NFE2L3 DEL Frame_Shift_Del 7 26224166 GA - 41 51 BRCA TCGA-BH-A0B4 ADAMDEC1 SNP Missense_Mutation 8 24259508 T A 55 75 BRCA TCGA-BH-A0B4 SLC20A2 SNP Silent 8 42294512 G A 40 37 BRCA TCGA-BH-A0B4 COL15A1 SNP Missense_Mutation 9 101765816 G T 39 48 BRCA TCGA-BH-A0B4 AKNA SNP Missense_Mutation 9 117120245 G A 35 60 BRCA TCGA-BH-A0B4 UNC13B SNP Missense_Mutation 9 35403592 C T 21 87 BRCA TCGA-BH-A0B4 VPS13A SNP Missense_Mutation 9 79955428 G A 33 82 BRCA TCGA-BH-A0B4 C9orf3 SNP Missense_Mutation 9 97522520 C T 32 66 BRCA TCGA-BH-A0B5 LAMTOR2 SNP Missense_Mutation 1 156024726 A G 6 73 BRCA TCGA-BH-A0B5 PLD5 SNP Missense_Mutation 1 242277235 C T 27 73 BRCA TCGA-BH-A0B5 DNAJC9 SNP Missense_Mutation 10 75003169 C G 32 90 BRCA TCGA-BH-A0B5 SPATA19 SNP Silent 11 133712412 G A 45 46 BRCA TCGA-BH-A0B5 OR8J3 SNP Missense_Mutation 11 55904866 G A 37 54 BRCA TCGA-BH-A0B5 TRIM5 SNP Missense_Mutation 11 5686469 G C 33 41 BRCA TCGA-BH-A0B5 MUS81 SNP Silent 11 65629461 C T 21 75 BRCA TCGA-BH-A0B5 CHPT1 SNP Nonsense_Mutation 12 102117533 C T 29 85 BRCA TCGA-BH-A0B5 C12orf42 SNP Missense_Mutation 12 103695971 G A 45 51 BRCA TCGA-BH-A0B5 CDKN1B SNP Nonsense_Mutation 12 12870853 C A 31 92 BRCA TCGA-BH-A0B5 ZNF268 SNP Silent 12 133779637 C T 29 46 BRCA TCGA-BH-A0B5 ANO2 SNP Missense_Mutation 12 5936967 C T 27 76 BRCA TCGA-BH-A0B5 BBS10 SNP Missense_Mutation 12 76740150 G A 44 51 BRCA TCGA-BH-A0B5 GRK1 DEL Frame_Shift_Del 13 114324090 TCTG - 54 85 BRCA TCGA-BH-A0B5 PPP2R5E SNP Missense_Mutation 14 63842801 C T 29 100 BRCA TCGA-BH-A0B5 C14orf102 SNP Missense_Mutation 14 90756755 A T 9 61 BRCA TCGA-BH-A0B5 PKD1 SNP Missense_Mutation 16 2142083 C G 23 40 BRCA TCGA-BH-A0B5 CEMP1 SNP Missense_Mutation 16 2580833 C G 27 46 BRCA TCGA-BH-A0B5 NPIPL2 SNP Missense_Mutation 16 74411912 G A 41 51 BRCA TCGA-BH-A0B5 LYZL6 SNP Missense_Mutation 17 34264771 C G 32 57 BRCA TCGA-BH-A0B5 MRPL45 SNP Silent 17 36478038 G A 44 53 BRCA TCGA-BH-A0B5 WSCD1 SNP Missense_Mutation 17 6021367 G A 37 92 BRCA TCGA-BH-A0B5 ALOXE3 SNP Splice_Site 17 8000125 C G 32 89 BRCA TCGA-BH-A0B5 ZNF521 SNP Silent 18 22806691 C T 31 28 BRCA TCGA-BH-A0B5 CYP4F11 SNP Missense_Mutation 19 16034795 G C 33 63 BRCA TCGA-BH-A0B5 RIF1 SNP Missense_Mutation 2 152320040 G A 33 69 BRCA TCGA-BH-A0B5 XIRP2 SNP Missense_Mutation 2 167760302 C T 31 58 BRCA TCGA-BH-A0B5 PSMD1 SNP Missense_Mutation 2 232035376 G A 41 100 BRCA TCGA-BH-A0B5 LCA5L SNP Missense_Mutation 21 40783710 C G 29 60 BRCA TCGA-BH-A0B5 MAPK1 SNP Missense_Mutation 22 22162014 C T 29 98 BRCA TCGA-BH-A0B5 BTK SNP Missense_Mutation 23 100614283 C T 32 99 BRCA TCGA-BH-A0B5 VSIG1 SNP Missense_Mutation 23 107315933 G A 40 48 BRCA TCGA-BH-A0B5 RBMXL3 SNP Silent 23 114424076 C A 29 45 BRCA TCGA-BH-A0B5 KIAA1210 SNP Missense_Mutation 23 118223589 C G 32 48 BRCA TCGA-BH-A0B5 FRMPD4 SNP Silent 23 12734858 C T 31 49 BRCA TCGA-BH-A0B5 MAGEB2 SNP Missense_Mutation 23 30237091 G A 40 45 BRCA TCGA-BH-A0B5 APEX2 SNP Missense_Mutation 23 55033173 G A 33 68 BRCA TCGA-BH-A0B5 ATRX SNP Missense_Mutation 23 76890106 C T 21 96 BRCA TCGA-BH-A0B5 ATRX SNP Silent 23 76940061 C T 29 65 BRCA TCGA-BH-A0B5 CBLB SNP Missense_Mutation 3 105439088 C T 30 100 BRCA TCGA-BH-A0B5 CNTN6 SNP Nonsense_Mutation 3 1424982 C T 29 83 BRCA TCGA-BH-A0B5 PIK3CA DEL In_Frame_Del 3 178916944 AAG - 1 89 BRCA TCGA-BH-A0B5 RARB SNP Silent 3 25622090 C T 29 86 BRCA TCGA-BH-A0B5 TGFBR2 SNP Missense_Mutation 3 30691805 G A 45 73 BRCA TCGA-BH-A0B5 CWH43 SNP Missense_Mutation 4 49030718 C G 32 60 BRCA TCGA-BH-A0B5 PF4 SNP Splice_site 4 74847580 C T 23 63 BRCA TCGA-BH-A0B5 SLC12A2 SNP Missense_Mutation 5 127474341 C G 32 55 BRCA TCGA-BH-A0B5 PCDHB1 SNP Missense_Mutation 5 140431164 G C 33 100 BRCA TCGA-BH-A0B5 ZNF131 SNP Missense_Mutation 5 43175143 G C 33 55 BRCA TCGA-BH-A0B5 ZSCAN12 SNP Silent 6 28358960 C T 32 50 BRCA TCGA-BH-A0B5 GPR110 SNP Missense_Mutation 6 46977528 C A 26 86 BRCA TCGA-BH-A0B5 RELN SNP Missense_Mutation 7 103301856 C T 23 71 BRCA TCGA-BH-A0B5 IQUB SNP Missense_Mutation 7 123152129 G A 45 48 BRCA TCGA-BH-A0B5 EGFR SNP Silent 7 55223635 C A 25 50 BRCA TCGA-BH-A0B5 NRBP2 SNP Nonsense_Mutation 8 144918179 C A 30 94 BRCA TCGA-BH-A0B5 SNTG1 SNP Missense_Mutation 8 51363125 C T 29 80 BRCA TCGA-BH-A0B5 KCNB2 SNP Missense_Mutation 8 73849283 G A 45 83 BRCA TCGA-BH-A0B5 TGFBR1 SNP Missense_Mutation 9 101908824 C G 29 70 BRCA TCGA-BH-A0B5 C9orf43 SNP Missense_Mutation 9 116175869 G C 33 50 BRCA TCGA-BH-A0B5 KIF12 SNP Missense_Mutation 9 116854879 C T 23 54 BRCA TCGA-BH-A0B5 PAPPA SNP Missense_Mutation 9 119097272 C T 26 83 BRCA TCGA-BH-A0B5 C5 SNP Splice_site 9 123722615 G A 34 77 BRCA TCGA-BH-A0B5 ZNF484 SNP Missense_Mutation 9 95608938 G C 45 56 BRCA TCGA-BH-A0B5 ZNF484 SNP Silent 9 95609116 G C 33 48 BRCA TCGA-BH-A0B5 ZNF484 SNP Missense_Mutation 9 95610467 G C 33 56 BRCA TCGA-BH-A0B7 HRNR SNP Missense_Mutation 1 152191571 C G 30 53 BRCA TCGA-BH-A0B7 ROR1 SNP Missense_Mutation 1 64624790 C T 29 100 BRCA TCGA-BH-A0B7 SACS SNP Missense_Mutation 13 23910597 C G 21 98 BRCA TCGA-BH-A0B7 VPS53 SNP Silent 17 505056 C T 23 42 BRCA TCGA-BH-A0B7 TP53 SNP Splice_Site 17 7578290 C T 24 77 BRCA TCGA-BH-A0B7 TCF4 SNP Silent 18 52928746 G A 46 97 BRCA TCGA-BH-A0B7 TIAM1 SNP Silent 21 32617864 G A 44 84 BRCA TCGA-BH-A0B7 NKAP SNP Silent 23 119077341 C T 27 36 BRCA TCGA-BH-A0B7 IGSF10 SNP Missense_Mutation 3 151161292 G A 39 61 BRCA TCGA-BH-A0B7 MUC4 SNP Missense_Mutation 3 195506172 G C 40 57 BRCA TCGA-BH-A0B7 PCDHGA12 SNP Missense_Mutation 5 140810665 A C 3 52 BRCA TCGA-BH-A0B7 TPST1 SNP Nonsense_Mutation 7 65705728 C T 23 83 BRCA TCGA-BH-A0B7 CALN1 SNP Missense_Mutation 7 71743768 G A 39 45 BRCA TCGA-BH-A0B7 GSN SNP Missense_Mutation 9 124062270 T G 59 37 BRCA TCGA-BH-A0B8 RSC1A1 SNP Silent 1 15987818 C T 20 50 BRCA TCGA-BH-A0B8 SPEN DEL Frame_Shift_Del 1 16265833 GA - 45 85 BRCA TCGA-BH-A0B8 USH2A SNP Missense_Mutation 1 215955505 C A 30 95 BRCA TCGA-BH-A0B8 MTR SNP Silent 1 237058726 G A 47 59 BRCA TCGA-BH-A0B8 OR2G6 SNP Missense_Mutation 1 248685620 G T 48 52 BRCA TCGA-BH-A0B8 ZNF672 SNP Missense_Mutation 1 249141669 G A 47 65 BRCA TCGA-BH-A0B8 PIK3CD SNP Missense_Mutation 1 9770533 G A 46 93 BRCA TCGA-BH-A0B8 DHX32 SNP Missense_Mutation 10 127530357 A T 4 85 BRCA TCGA-BH-A0B8 HHEX SNP Silent 10 94452135 A C 14 57 BRCA TCGA-BH-A0B8 TECTA SNP Silent 11 121000883 C T 19 29 BRCA TCGA-BH-A0B8 ST14 SNP Missense_Mutation 11 130078396 C T 27 76 BRCA TCGA-BH-A0B8 DTX4 SNP Silent 11 58962833 C T 23 37 BRCA TCGA-BH-A0B8 POP5 SNP Nonsense_Mutation 12 121018957 C A 23 92 BRCA TCGA-BH-A0B8 STAT2 SNP Splice_site 12 56750353 C T 21 90 BRCA TCGA-BH-A0B8 STAT6 SNP Missense_Mutation 12 57499326 C T 18 60 BRCA TCGA-BH-A0B8 SRGAP1 SNP Missense_Mutation 12 64474111 C A 29 95 BRCA TCGA-BH-A0B8 HERC2 SNP Missense_Mutation 15 28459404 G A 38 57 BRCA TCGA-BH-A0B8 CBLN1 INS Frame_Shift_Ins 16 49315311 - A 32 80 BRCA TCGA-BH-A0B8 STAT5B SNP Missense_Mutation 17 40371806 G A 40 98 BRCA TCGA-BH-A0B8 ITGB3 SNP Missense_Mutation 17 45360858 G A 33 67 BRCA TCGA-BH-A0B8 SMARCA4 DEL Frame_Shift_Del 19 11144187 GG - 35 66 BRCA TCGA-BH-A0B8 ZNF527 SNP Missense_Mutation 19 37879753 C T 29 76 BRCA TCGA-BH-A0B8 ZFP112 SNP Silent 19 44834085 C T 30 54 BRCA TCGA-BH-A0B8 KLK9 SNP Nonsense_Mutation 19 51512532 C T 21 66 BRCA TCGA-BH-A0B8 SDPR SNP Silent 2 192700907 C T 19 43 BRCA TCGA-BH-A0B8 C20orf177 SNP Missense_Mutation 20 58520079 C T 29 55 BRCA TCGA-BH-A0B8 RHOXF2B SNP Silent 23 119293081 C T 27 27 BRCA TCGA-BH-A0B8 PDIA5 SNP Silent 3 122873870 C T 24 58 BRCA TCGA-BH-A0B8 SDHAP2 SNP Missense_Mutation 3 195400843 G A 33 67 BRCA TCGA-BH-A0B8 MUC4 SNP Missense_Mutation 3 195486094 C T 29 33 BRCA TCGA-BH-A0B8 TNK2 SNP Silent 3 195606001 G A 38 43 BRCA TCGA-BH-A0B8 MAGI1 SNP Missense_Mutation 3 65365083 C T 23 99 BRCA TCGA-BH-A0B8 HNRNPD SNP Missense_Mutation 4 83277695 T C 49 91 BRCA TCGA-BH-A0B8 ADAMTS19 SNP Nonsense_Mutation 5 129040077 G A 47 87 BRCA TCGA-BH-A0B8 PHF15 SNP Missense_Mutation 5 133896481 A G 11 79 BRCA TCGA-BH-A0B8 PCDHA1 SNP Missense_Mutation 5 140167742 C T 23 53 BRCA TCGA-BH-A0B8 MYO10 SNP Missense_Mutation 5 16675085 G C 44 100 BRCA TCGA-BH-A0B8 BTNL3 SNP Missense_Mutation 5 180420116 C A 30 50 BRCA TCGA-BH-A0B8 SYNE1 SNP Silent 6 152652194 G A 33 57 BRCA TCGA-BH-A0B8 FNDC1 SNP Silent 6 159670105 C A 21 54 BRCA TCGA-BH-A0B8 SMO SNP Missense_Mutation 7 128852230 C T 26 78 BRCA TCGA-BH-A0B8 SFRP4 SNP Silent 7 37955825 G A 38 56 BRCA TCGA-BH-A0B8 CDK14 SNP Silent 7 90233551 C T 21 67 BRCA TCGA-BH-A0B8 ANXA13 SNP Nonsense_Mutation 8 124693590 G A 45 81 BRCA TCGA-BH-A0B9 ECM1 SNP Missense_Mutation 1 150485271 T C 55 70 BRCA TCGA-BH-A0B9 CC2D1B SNP Missense_Mutation 1 52824769 C T 27 53 BRCA TCGA-BH-A0B9 KANK4 SNP Silent 1 62740107 C T 30 45 BRCA TCGA-BH-A0B9 REXO2 SNP Missense_Mutation 11 114320615 G A 37 78 BRCA TCGA-BH-A0B9 SIPA1 DEL In_Frame_Del 11 65413699 GGA - 39 91 BRCA TCGA-BH-A0B9 TAS2R43 SNP Missense_Mutation 12 11244488 G C 41 62 BRCA TCGA-BH-A0B9 MLL2 SNP Missense_Mutation 12 49436351 C G 30 89 BRCA TCGA-BH-A0B9 SHMT2 SNP Missense_Mutation 12 57626583 G A 41 97 BRCA TCGA-BH-A0B9 USP12 SNP Missense_Mutation 13 27679970 G T 33 79 BRCA TCGA-BH-A0B9 SCAMP2 SNP Missense_Mutation 15 75146427 G A 36 53 BRCA TCGA-BH-A0B9 IQGAP1 SNP Missense_Mutation 15 91019954 G T 45 100 BRCA TCGA-BH-A0B9 TP53 SNP Missense_Mutation 17 7577106 G T 41 95 BRCA TCGA-BH-A0B9 RNF213 SNP Missense_Mutation 17 78321232 G C 33 44 BRCA TCGA-BH-A0B9 MYO5B SNP Silent 18 47463624 A G 5 54 BRCA TCGA-BH-A0B9 NEDD4L SNP Missense_Mutation 18 56010162 C G 31 71 BRCA TCGA-BH-A0B9 RYR1 SNP Missense_Mutation 19 39018962 A G 3 68 BRCA TCGA-BH-A0B9 GYS1 SNP Missense_Mutation 19 49489210 C T 19 75 BRCA TCGA-BH-A0B9 MYH14 SNP Silent 19 50750310 C T 22 67 BRCA TCGA-BH-A0B9 CYP26B1 SNP Nonsense_Mutation 2 72371201 C A 31 71 BRCA TCGA-BH-A0B9 KANSL3 SNP Missense_Mutation 2 97278595 C T 27 81 BRCA TCGA-BH-A0B9 ASXL1 SNP Missense_Mutation 20 31022583 G C 33 75 BRCA TCGA-BH-A0B9 ASXL1 SNP Missense_Mutation 20 31023102 G C 45 54 BRCA TCGA-BH-A0B9 ASXL1 SNP Missense_Mutation 20 31023531 G A 45 92 BRCA TCGA-BH-A0B9 ASXL1 SNP Missense_Mutation 20 31023897 G T 45 51 BRCA TCGA-BH-A0B9 ASXL1 SNP Missense_Mutation 20 31024108 G T 41 57 BRCA TCGA-BH-A0B9 PSMA7 SNP Silent 20 60714888 C T 24 64 BRCA TCGA-BH-A0B9 TMPRSS15 SNP Silent 21 19666646 G C 33 48 BRCA TCGA-BH-A0B9 WWC3 DEL Frame_Shift_Del 23 10102551 C - 26 56 BRCA TCGA-BH-A0B9 SLC22A14 DEL Frame_Shift_Del 3 38348770 CG - 19 38 BRCA TCGA-BH-A0B9 SLC22A14 DEL Frame_Shift_Del 3 38348773 AGAAG - 3 51 BRCA TCGA-BH-A0B9 CLNK SNP Missense_Mutation 4 10522444 G A 40 52 BRCA TCGA-BH-A0B9 SGCD SNP Missense_Mutation 5 156074477 C T 27 83 BRCA TCGA-BH-A0B9 LPA SNP Missense_Mutation 6 161022000 C G 19 43 BRCA TCGA-BH-A0B9 NOTCH4 SNP Missense_Mutation 6 32180644 G A 43 56 BRCA TCGA-BH-A0B9 KIAA0895 SNP Missense_Mutation 7 36366445 C T 26 49 BRCA TCGA-BH-A0B9 ZNF655 SNP Silent 7 99158245 G A 33 51 BRCA TCGA-BH-A0B9 ZFPM2 SNP Missense_Mutation 8 106814408 G A 37 100 BRCA TCGA-BH-A0B9 XKR4 SNP Missense_Mutation 8 56435863 G A 40 86 BRCA TCGA-BH-A0B9 RABGAP1 SNP Silent 9 125863868 G A 44 60 BRCA TCGA-BH-A0BA POGZ SNP Missense_Mutation 1 151377585 A G 15 87 BRCA TCGA-BH-A0BA LCE2B SNP Missense_Mutation 1 152659368 C A 30 64 BRCA TCGA-BH-A0BA KIF21B SNP Missense_Mutation 1 200969636 C T 27 51 BRCA TCGA-BH-A0BA AVPR1B SNP Missense_Mutation 1 206224520 T A 55 59 BRCA TCGA-BH-A0BA RGS7 SNP Missense_Mutation 1 240975222 A C 1 71 BRCA TCGA-BH-A0BA SAAL1 DEL Frame_Shift_Del 11 18105265 TAGAGGAAGATCTACTG - 61 51 BRCA TCGA-BH-A0BA KIAA0430 SNP Silent 16 15692757 T C 52 50 BRCA TCGA-BH-A0BA HS3ST4 SNP Silent 16 26147359 T C 52 53 BRCA TCGA-BH-A0BA CDH1 SNP Missense_Mutation 16 68844191 C A 22 81 BRCA TCGA-BH-A0BA PHF12 SNP Nonsense_Mutation 17 27238154 G A 37 63 BRCA TCGA-BH-A0BA ZNF841 SNP Missense_Mutation 19 52570087 A C 8 79 BRCA TCGA-BH-A0BA POTEF SNP Missense_Mutation 2 130831831 G A 39 76 BRCA TCGA-BH-A0BA GPR39 SNP Silent 2 133175212 C T 19 49 BRCA TCGA-BH-A0BA SESTD1 SNP Missense_Mutation 2 180047811 G A 41 96 BRCA TCGA-BH-A0BA DYRK1A SNP Silent 21 38884543 A G 8 76 BRCA TCGA-BH-A0BA KRTAP10-5 SNP Missense_Mutation 21 46000198 C G 24 41 BRCA TCGA-BH-A0BA GYG2 SNP Missense_Mutation 23 2772184 G T 46 88 BRCA TCGA-BH-A0BA FOXP3 SNP Missense_Mutation 23 49107842 G A 40 54 BRCA TCGA-BH-A0BA FAM123B SNP Missense_Mutation 23 63412049 G A 42 92 BRCA TCGA-BH-A0BA ACAD9 SNP Missense_Mutation 3 128631355 C G 30 65 BRCA TCGA-BH-A0BA EPHB1 SNP Missense_Mutation 3 134920392 C A 28 100 BRCA TCGA-BH-A0BA PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A0BA DGKG SNP Splice_site 3 185986591 G A 40 98 BRCA TCGA-BH-A0BA WDFY3 SNP Missense_Mutation 4 85708711 T G 57 50 BRCA TCGA-BH-A0BA MMRN1 SNP Missense_Mutation 4 90816310 C T 27 75 BRCA TCGA-BH-A0BA PCDHB6 DEL Frame_Shift_Del 5 140530408 C - 30 53 BRCA TCGA-BH-A0BA NT5DC1 SNP Missense_Mutation 6 116544201 G A 45 72 BRCA TCGA-BH-A0BA ABCA13 SNP Missense_Mutation 7 48352730 G A 38 54 BRCA TCGA-BH-A0BA GSDMC SNP Silent 8 130777949 G A 45 56 BRCA TCGA-BH-A0BA RXRA SNP Silent 9 137328394 C A 29 55 BRCA TCGA-BH-A0BC CEPT1 SNP Missense_Mutation 1 111724830 A T 4 58 BRCA TCGA-BH-A0BC COPA SNP Silent 1 160283863 A C 3 52 BRCA TCGA-BH-A0BC FCGR2A SNP Silent 1 161475284 G A 33 51 BRCA TCGA-BH-A0BC UBR4 SNP Missense_Mutation 1 19464532 C G 32 96 BRCA TCGA-BH-A0BC AHCTF1 SNP Nonsense_Mutation 1 247079596 C A 29 76 BRCA TCGA-BH-A0BC SFPQ SNP Missense_Mutation 1 35656463 T C 52 93 BRCA TCGA-BH-A0BC BCAR3 SNP Silent 1 94048293 C T 19 32 BRCA TCGA-BH-A0BC AMOTL1 SNP Silent 11 94532836 G A 38 51 BRCA TCGA-BH-A0BC SRRM4 SNP Silent 12 119583290 C T 24 55 BRCA TCGA-BH-A0BC PMEL SNP Silent 12 56349111 G A 37 54 BRCA TCGA-BH-A0BC ACSS3 SNP Missense_Mutation 12 81545639 C T 20 99 BRCA TCGA-BH-A0BC MYO5A SNP Silent 15 52620094 C T 18 59 BRCA TCGA-BH-A0BC UNC13C SNP Silent 15 54556502 T A 64 63 BRCA TCGA-BH-A0BC ANPEP SNP Missense_Mutation 15 90349393 C T 18 60 BRCA TCGA-BH-A0BC LYZL6 SNP Silent 17 34264775 G A 40 34 BRCA TCGA-BH-A0BC TP53 SNP Missense_Mutation 17 7577539 G A 39 60 BRCA TCGA-BH-A0BC UPF1 SNP Missense_Mutation 19 18974986 G T 38 94 BRCA TCGA-BH-A0BC ZNF415 SNP Nonsense_Mutation 19 53612661 C A 30 61 BRCA TCGA-BH-A0BC DPP10 SNP Missense_Mutation 2 116572515 A T 8 87 BRCA TCGA-BH-A0BC SMYD1 SNP Silent 2 88390554 C T 29 74 BRCA TCGA-BH-A0BC GAB4 SNP Missense_Mutation 22 17450868 C G 32 54 BRCA TCGA-BH-A0BC GTSE1 SNP Missense_Mutation 22 46712235 A T 12 52 BRCA TCGA-BH-A0BC TRAT1 SNP Nonsense_Mutation 3 108549621 C T 19 51 BRCA TCGA-BH-A0BC STAG1 SNP Splice_site 3 136136813 C G 25 98 BRCA TCGA-BH-A0BC PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA TCGA-BH-A0BC WDR48 SNP Missense_Mutation 3 39136217 C T 23 86 BRCA TCGA-BH-A0BC PCDH7 SNP Missense_Mutation 4 30725361 G A 45 68 BRCA TCGA-BH-A0BC PCDHGB1 SNP Silent 5 140731309 G A 38 25 BRCA TCGA-BH-A0BC MEF2C SNP Nonsense_Mutation 5 88018447 G A 38 97 BRCA TCGA-BH-A0BC TDRD6 SNP Missense_Mutation 6 46657115 A G 8 68 BRCA TCGA-BH-A0BC ZFPM2 SNP Missense_Mutation 8 106431410 T A 51 69 BRCA TCGA-BH-A0BC DPYSL2 SNP Missense_Mutation 8 26484190 G A 46 79 BRCA TCGA-BH-A0BC FAM22G SNP Missense_Mutation 9 99701178 A C 7 47 BRCA TCGA-BH-A0BD KCNT2 SNP Missense_Mutation 1 196300389 T C 49 58 BRCA TCGA-BH-A0BD RYR2 SNP Missense_Mutation 1 237955580 C T 19 100 BRCA TCGA-BH-A0BD GNL2 SNP Missense_Mutation 1 38034775 G C 36 43 BRCA TCGA-BH-A0BD SORCS1 SNP Missense_Mutation 10 108337210 G A 38 62 BRCA TCGA-BH-A0BD SHANK2 SNP Missense_Mutation 11 70332515 T C 63 59 BRCA TCGA-BH-A0BD TRIM64B SNP Missense_Mutation 11 89609144 A C 1 46 BRCA TCGA-BH-A0BD UBC DEL Frame_Shift_Del 12 125397989 TCCTTGTCCTGGA - 62 86 BRCA TCGA-BH-A0BD AAAS SNP Silent 12 53714438 G A 43 46 BRCA TCGA-BH-A0BD KIAA1704 SNP Missense_Mutation 13 45580344 A G 11 81 BRCA TCGA-BH-A0BD ENSG00000188403 SNP Missense_Mutation 15 20170042 G A 48 55 BRCA TCGA-BH-A0BD LCTL SNP Missense_Mutation 15 66853388 G C 34 75 BRCA TCGA-BH-A0BD RTN4 SNP Missense_Mutation 2 55252287 G T 41 82 BRCA TCGA-BH-A0BD PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A0BD MAN2B2 SNP Silent 4 6610855 C T 27 52 BRCA TCGA-BH-A0BD HCN1 SNP Missense_Mutation 5 45396610 C T 23 100 BRCA TCGA-BH-A0BD CFB SNP Missense_Mutation 6 31914024 T A 54 75 BRCA TCGA-BH-A0BD MRPL2 SNP Missense_Mutation 6 43022206 C A 28 98 BRCA TCGA-BH-A0BD UBR5 SNP Silent 8 103298799 C A 31 49 BRCA TCGA-BH-A0BD REXO1L1 SNP Missense_Mutation 8 86573790 C T 25 53 BRCA TCGA-BH-A0BD C9orf43 SNP Missense_Mutation 9 116186580 A G 6 59 BRCA TCGA-BH-A0BF PINK1 SNP Missense_Mutation 1 20964471 T C 51 61 BRCA TCGA-BH-A0BF CAMK1G SNP Silent 1 209781258 C T 31 46 BRCA TCGA-BH-A0BF L1TD1 SNP Silent 1 62673212 C T 26 55 BRCA TCGA-BH-A0BF PHLDB1 SNP Missense_Mutation 11 118486917 C A 28 96 BRCA TCGA-BH-A0BF TRPM5 SNP Missense_Mutation 11 2434145 C T 19 72 BRCA TCGA-BH-A0BF HSP90AA1 DEL In_Frame_Del 14 102551267 TTC - 64 37 BRCA TCGA-BH-A0BF CHRNA3 SNP Missense_Mutation 15 78894311 C T 31 100 BRCA TCGA-BH-A0BF KRT27 SNP Silent 17 38935976 G A 40 41 BRCA TCGA-BH-A0BF DLX4 SNP Missense_Mutation 17 48050503 T C 54 61 BRCA TCGA-BH-A0BF TP53 SNP Missense_Mutation 17 7577548 C T 23 94 BRCA TCGA-BH-A0BF PTGER1 DEL Frame_Shift_Del 19 14583537 AGGGTCCAGG - 3 52 BRCA TCGA-BH-A0BF ZNF208 SNP Missense_Mutation 19 22170078 G C 33 52 BRCA TCGA-BH-A0BF RTN2 SNP Silent 19 45997923 C T 29 50 BRCA TCGA-BH-A0BF ARHGAP15 SNP Silent 2 144525681 C T 18 67 BRCA TCGA-BH-A0BF TTN SNP Missense_Mutation 2 179647587 T C 55 94 BRCA TCGA-BH-A0BF KLHL30 SNP Missense_Mutation 2 239057685 G T 36 73 BRCA TCGA-BH-A0BF MAT2A SNP Silent 2 85769732 T C 51 47 BRCA TCGA-BH-A0BF MYH7B SNP Silent 20 33581196 C T 21 51 BRCA TCGA-BH-A0BF MYBL2 SNP Missense_Mutation 20 42311462 G A 35 98 BRCA TCGA-BH-A0BF FUNDC1 DEL In_Frame_Del 23 44386496 TTG - 52 80 BRCA TCGA-BH-A0BF PHKA1 SNP Missense_Mutation 23 71813106 T A 58 46 BRCA TCGA-BH-A0BF PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA TCGA-BH-A0BF ERCC8 SNP Missense_Mutation 5 60199504 T C 56 75 BRCA TCGA-BH-A0BF NUP153 SNP Missense_Mutation 6 17669532 G C 33 50 BRCA TCGA-BH-A0BF SRF SNP Missense_Mutation 6 43141698 G C 33 58 BRCA TCGA-BH-A0BF FSCN1 SNP Silent 7 5644991 C T 27 53 BRCA TCGA-BH-A0BF HGF SNP Missense_Mutation 7 81392029 G C 36 86 BRCA TCGA-BH-A0BF MTERF SNP Missense_Mutation 7 91503433 C G 21 51 BRCA TCGA-BH-A0BG PLEKHM2 SNP Missense_Mutation 1 16043237 T C 59 93 BRCA TCGA-BH-A0BG CENPF SNP Silent 1 214794222 T C 53 47 BRCA TCGA-BH-A0BG HSPG2 SNP Missense_Mutation 1 22176924 A C 6 75 BRCA TCGA-BH-A0BG PCNXL2 SNP Missense_Mutation 1 233397811 G A 45 81 BRCA TCGA-BH-A0BG ACTN2 SNP Missense_Mutation 1 236918367 A C 12 75 BRCA TCGA-BH-A0BG ZNF644 SNP Missense_Mutation 1 91406655 C T 27 84 BRCA TCGA-BH-A0BG LOC100289151 SNP Missense_Mutation 10 15058964 C T 25 84 BRCA TCGA-BH-A0BG FAM171A1 SNP Silent 10 15256057 T C 62 48 BRCA TCGA-BH-A0BG SEPT7L SNP Missense_Mutation 10 38680963 G T 42 81 BRCA TCGA-BH-A0BG FAM22D SNP Missense_Mutation 10 89124862 G A 37 48 BRCA TCGA-BH-A0BG SLC37A2 SNP Missense_Mutation 11 124947362 G C 35 69 BRCA TCGA-BH-A0BG OR4P4 SNP Missense_Mutation 11 55406228 T A 52 55 BRCA TCGA-BH-A0BG CHRM1 SNP Missense_Mutation 11 62677587 G C 39 67 BRCA TCGA-BH-A0BG C11orf16 SNP Missense_Mutation 11 8950998 C A 25 56 BRCA TCGA-BH-A0BG OTOGL SNP Missense_Mutation 12 80658942 G A 39 51 BRCA TCGA-BH-A0BG XPO4 SNP Silent 13 21382693 G C 41 53 BRCA TCGA-BH-A0BG DIAPH3 SNP Missense_Mutation 13 60240935 T C 52 46 BRCA TCGA-BH-A0BG LOC100130814 DEL Frame_Shift_Del 14 101540817 C - 18 32 BRCA TCGA-BH-A0BG GOLGA8E SNP Silent 15 23441090 G A 40 22 BRCA TCGA-BH-A0BG ZNF469 SNP Missense_Mutation 16 88501728 G C 37 52 BRCA TCGA-BH-A0BG PMP22 SNP Missense_Mutation 17 15134333 C T 23 38 BRCA TCGA-BH-A0BG MED24 SNP Silent 17 38187823 G A 43 26 BRCA TCGA-BH-A0BG FBXO39 SNP Missense_Mutation 17 6684022 C A 25 59 BRCA TCGA-BH-A0BG TP53 INS Frame_Shift_Ins 17 7578246 - A 25 40 BRCA TCGA-BH-A0BG ZNF254 SNP Missense_Mutation 19 24310770 C G 32 51 BRCA TCGA-BH-A0BG SAPS1 SNP Missense_Mutation 19 55742202 G C 43 45 BRCA TCGA-BH-A0BG TTN SNP Missense_Mutation 2 179443676 C T 25 74 BRCA TCGA-BH-A0BG STAT1 INS In_Frame_Ins 2 191874683 - CCAGGC 54 89 BRCA TCGA-BH-A0BG LOC100287723 SNP Missense_Mutation 2 90458676 G A 34 75 BRCA TCGA-BH-A0BG GPAT2 SNP Missense_Mutation 2 96688802 C G 18 49 BRCA TCGA-BH-A0BG TRAPPC10 SNP Nonsense_Mutation 21 45479068 C T 29 100 BRCA TCGA-BH-A0BG FAM120C SNP Missense_Mutation 23 54099576 C G 32 80 BRCA TCGA-BH-A0BG MYRIP SNP Splice_site 3 40291713 A G 12 73 BRCA TCGA-BH-A0BG KLHDC8B SNP Missense_Mutation 3 49211701 G A 43 100 BRCA TCGA-BH-A0BG CDKN2AIP SNP Missense_Mutation 4 184367676 C T 29 53 BRCA TCGA-BH-A0BG ENSG00000151539 SNP Missense_Mutation 4 3949637 G A 39 51 BRCA TCGA-BH-A0BG UGT2B28 SNP Missense_Mutation 4 70288700 G A 38 70 BRCA TCGA-BH-A0BG CHSY3 SNP Missense_Mutation 5 129520027 A T 3 63 BRCA TCGA-BH-A0BG RPS14 SNP Missense_Mutation 5 149826455 G C 34 95 BRCA TCGA-BH-A0BG ZDHHC11B SNP Silent 5 766939 G A 40 46 BRCA TCGA-BH-A0BG HGC6.3 SNP Silent 6 168377012 G T 43 67 BRCA TCGA-BH-A0BG OR2J3 SNP Silent 6 29079925 C G 29 13 BRCA TCGA-BH-A0BG TMEM151B SNP Missense_Mutation 6 44274746 G A 38 82 BRCA TCGA-BH-A0BG SAP25 SNP Silent 7 100170027 G C 35 46 BRCA TCGA-BH-A0BG LAMB4 SNP Missense_Mutation 7 107732103 C T 30 62 BRCA TCGA-BH-A0BG FAM3C SNP Splice_site 7 121018965 A C 5 79 BRCA TCGA-BH-A0BG SEPT13 SNP Missense_Mutation 7 45776474 C T 17 83 BRCA TCGA-BH-A0BG SLC25A40 SNP Missense_Mutation 7 87466068 T G 52 51 BRCA TCGA-BH-A0BG KHDRBS3 SNP Missense_Mutation 8 136619254 T A 49 54 BRCA TCGA-BH-A0BG XKR4 SNP Silent 8 56435907 G A 43 56 BRCA TCGA-BH-A0BG KDM4C SNP Missense_Mutation 9 7011799 G T 34 98 BRCA TCGA-BH-A0BJ CD101 SNP Silent 1 117576573 C T 32 45 BRCA TCGA-BH-A0BJ CLCA2 SNP Silent 1 86904570 C A 30 50 BRCA TCGA-BH-A0BJ CREM SNP Missense_Mutation 10 35500300 G T 33 87 BRCA TCGA-BH-A0BJ SNP Missense_Mutation 10 81270316 C T 26 46 BRCA TCGA-BH-A0BJ APOA5 INS In_Frame_Ins 11 116660880 - AGG 9 52 BRCA TCGA-BH-A0BJ OR10G9 SNP Missense_Mutation 11 123894588 G A 33 75 BRCA TCGA-BH-A0BJ SLC5A12 SNP Splice_site 11 26720081 C T 25 85 BRCA TCGA-BH-A0BJ SYVN1 SNP Missense_Mutation 11 64897307 G A 38 78 BRCA TCGA-BH-A0BJ FREM2 SNP Missense_Mutation 13 39266380 T A 49 50 BRCA TCGA-BH-A0BJ PLEKHG4 SNP Missense_Mutation 16 67315673 C T 27 58 BRCA TCGA-BH-A0BJ CBX1 SNP Missense_Mutation 17 46152423 C T 30 100 BRCA TCGA-BH-A0BJ SLC35B1 SNP Missense_Mutation 17 47780313 T C 60 90 BRCA TCGA-BH-A0BJ HPS4 SNP Missense_Mutation 22 26860722 C A 25 52 BRCA TCGA-BH-A0BJ OPN1LW SNP Missense_Mutation 23 153421964 G A 46 64 BRCA TCGA-BH-A0BJ PTCHD1 SNP Nonsense_Mutation 23 23398006 C A 29 72 BRCA TCGA-BH-A0BJ PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA TCGA-BH-A0BJ CNTN4 SNP Silent 3 3084016 T C 57 48 BRCA TCGA-BH-A0BJ STARD4 SNP Missense_Mutation 5 110835685 T C 49 71 BRCA TCGA-BH-A0BJ LPCAT1 SNP Silent 5 1474147 A G 14 43 BRCA TCGA-BH-A0BJ ACTR3B SNP Missense_Mutation 7 152550654 G A 42 94 BRCA TCGA-BH-A0BJ ZNF716 SNP Nonsense_Mutation 7 57528551 C A 28 64 BRCA TCGA-BH-A0BJ DAB2IP SNP Missense_Mutation 9 124522209 G A 37 97 BRCA TCGA-BH-A0BL FBXO44 SNP Nonsense_Mutation 1 11718332 G T 37 54 BRCA TCGA-BH-A0BL PRPF3 SNP Missense_Mutation 1 150325444 T A 58 58 BRCA TCGA-BH-A0BL PLA2G2E SNP Missense_Mutation 1 20250034 G T 34 51 BRCA TCGA-BH-A0BL RYR2 SNP Missense_Mutation 1 237889592 G A 39 71 BRCA TCGA-BH-A0BL TCTEX1D1 SNP Silent 1 67242936 T G 61 48 BRCA TCGA-BH-A0BL USP54 SNP Missense_Mutation 10 75264684 A G 13 61 BRCA TCGA-BH-A0BL ZNF215 SNP Missense_Mutation 11 6977547 A T 3 54 BRCA TCGA-BH-A0BL SUOX SNP Missense_Mutation 12 56397550 T G 51 86 BRCA TCGA-BH-A0BL RIMKLB SNP Missense_Mutation 12 8904625 C T 19 91 BRCA TCGA-BH-A0BL NARG2 SNP Silent 15 60741135 A G 3 43 BRCA TCGA-BH-A0BL SSTR5 SNP Missense_Mutation 16 1129206 G A 38 83 BRCA TCGA-BH-A0BL PDILT SNP Missense_Mutation 16 20396021 G T 43 76 BRCA TCGA-BH-A0BL C16orf80 SNP Missense_Mutation 16 58149339 C T 19 98 BRCA TCGA-BH-A0BL VAC14 SNP Missense_Mutation 16 70818087 T G 54 54 BRCA TCGA-BH-A0BL HYDIN SNP Missense_Mutation 16 70900083 G T 43 49 BRCA TCGA-BH-A0BL HYDIN SNP Missense_Mutation 16 70954676 G C 38 83 BRCA TCGA-BH-A0BL WDR81 SNP Missense_Mutation 17 1630714 G A 40 62 BRCA TCGA-BH-A0BL HLF SNP Missense_Mutation 17 53398125 C T 31 67 BRCA TCGA-BH-A0BL TP53 SNP Missense_Mutation 17 7578478 G T 43 76 BRCA TCGA-BH-A0BL ENDOV SNP Missense_Mutation 17 78403668 C G 22 54 BRCA TCGA-BH-A0BL VPS4B SNP Missense_Mutation 18 61064481 T G 54 94 BRCA TCGA-BH-A0BL FBL SNP Missense_Mutation 19 40331123 G C 37 67 BRCA TCGA-BH-A0BL FCAR SNP Silent 19 55399555 T C 58 38 BRCA TCGA-BH-A0BL RGPD4 SNP Nonsense_Mutation 2 108479240 C T 27 58 BRCA TCGA-BH-A0BL MYO1B SNP Missense_Mutation 2 192225417 T G 62 87 BRCA TCGA-BH-A0BL ACSL3 SNP Missense_Mutation 2 223806218 G A 36 70 BRCA TCGA-BH-A0BL SEMA4F SNP Missense_Mutation 2 74884993 A G 4 72 BRCA TCGA-BH-A0BL RPS6KA3 SNP Missense_Mutation 23 20185730 C T 19 86 BRCA TCGA-BH-A0BL PDK3 SNP Silent 23 24552117 G T 38 42 BRCA TCGA-BH-A0BL GOLGB1 SNP Nonsense_Mutation 3 121409630 G A 37 56 BRCA TCGA-BH-A0BL TOPBP1 SNP Missense_Mutation 3 133379890 C T 31 80 BRCA TCGA-BH-A0BL ALS2CL SNP Missense_Mutation 3 46717150 C A 27 51 BRCA TCGA-BH-A0BL ZNF330 SNP Missense_Mutation 4 142154959 A G 12 71 BRCA TCGA-BH-A0BL MMAA SNP Missense_Mutation 4 146560483 A C 4 52 BRCA TCGA-BH-A0BL CNGA1 SNP Missense_Mutation 4 47939288 G T 46 77 BRCA TCGA-BH-A0BL OR2V1 SNP Missense_Mutation 5 180551841 A T 16 66 BRCA TCGA-BH-A0BL FYB SNP Missense_Mutation 5 39202164 T C 52 43 BRCA TCGA-BH-A0BL ENPP3 SNP Silent 6 132041440 T C 62 52 BRCA TCGA-BH-A0BL KCNQ5 SNP Missense_Mutation 6 73904812 A G 10 76 BRCA TCGA-BH-A0BL DLX5 SNP Nonsense_Mutation 7 96653899 G A 39 65 BRCA TCGA-BH-A0BL CSMD3 SNP Missense_Mutation 8 113504808 C A 21 99 BRCA TCGA-BH-A0BL SLC25A25 SNP Nonsense_Mutation 9 130863453 G T 45 98 BRCA TCGA-BH-A0BM HRNR SNP Missense_Mutation 1 152188277 G T 33 51 BRCA TCGA-BH-A0BM DSCAML1 SNP Missense_Mutation 11 117651408 G A 38 85 BRCA TCGA-BH-A0BM OSBPL8 SNP Missense_Mutation 12 76793679 C T 17 100 BRCA TCGA-BH-A0BM CSPG4 SNP Silent 15 75983021 G A 33 50 BRCA TCGA-BH-A0BM KRT36 SNP Nonsense_Mutation 17 39645738 C A 30 64 BRCA TCGA-BH-A0BM DDX5 DEL Frame_Shift_Del 17 62496266 G - 48 56 BRCA TCGA-BH-A0BM TANC1 SNP Silent 2 160031601 A G 2 53 BRCA TCGA-BH-A0BM ETAA1 SNP Silent 2 67631500 T C 61 50 BRCA TCGA-BH-A0BM RUNX1 INS Frame_Shift_Ins 21 36171704 - TA 44 83 BRCA TCGA-BH-A0BM KDM5C SNP Silent 23 53247017 A C 1 63 BRCA TCGA-BH-A0BM PCDH11X SNP Missense_Mutation 23 91873568 C G 32 50 BRCA TCGA-BH-A0BM RPN1 SNP Missense_Mutation 3 128356884 C T 17 61 BRCA TCGA-BH-A0BM PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA TCGA-BH-A0BM ADAMTS9 SNP Missense_Mutation 3 64554073 G A 43 87 BRCA TCGA-BH-A0BM RGL2 SNP Missense_Mutation 6 33260312 G C 47 61 BRCA TCGA-BH-A0BM CSMD1 SNP Missense_Mutation 8 2830770 C T 23 86 BRCA TCGA-BH-A0BM RAD54B SNP Nonsense_Mutation 8 95384609 G T 37 77 BRCA TCGA-BH-A0BM TSC1 SNP Silent 9 135797350 C T 23 47 BRCA TCGA-BH-A0BO USH2A SNP Missense_Mutation 1 215847544 C T 19 71 BRCA TCGA-BH-A0BO FAM171A1 SNP Missense_Mutation 10 15290661 G A 38 77 BRCA TCGA-BH-A0BO TTC17 SNP Missense_Mutation 11 43428954 G A 34 97 BRCA TCGA-BH-A0BO HCFC2 SNP Missense_Mutation 12 104461732 G A 40 100 BRCA TCGA-BH-A0BO LRRIQ1 SNP Missense_Mutation 12 85460647 A C 9 80 BRCA TCGA-BH-A0BO ADAMTSL5 SNP Silent 19 1507614 G A 43 52 BRCA TCGA-BH-A0BO PRMT1 SNP Silent 19 50189355 G A 47 67 BRCA TCGA-BH-A0BO RFX2 SNP Missense_Mutation 19 6001886 G T 42 61 BRCA TCGA-BH-A0BO LTBP1 SNP Missense_Mutation 2 33540311 C G 32 53 BRCA TCGA-BH-A0BO FAM182A SNP Missense_Mutation 20 26063548 G A 41 54 BRCA TCGA-BH-A0BO CD86 SNP Silent 3 121825056 C G 29 60 BRCA TCGA-BH-A0BO TMCC1 SNP Missense_Mutation 3 129370451 A C 10 71 BRCA TCGA-BH-A0BO PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A0BO ZNF619 SNP Missense_Mutation 3 40529529 T C 55 42 BRCA TCGA-BH-A0BO PPP3CA SNP Missense_Mutation 4 101950343 T C 54 75 BRCA TCGA-BH-A0BO HTT SNP Nonsense_Mutation 4 3148607 C G 29 98 BRCA TCGA-BH-A0BO SPINK5 SNP Missense_Mutation 5 147484520 A T 5 57 BRCA TCGA-BH-A0BO LIFR DEL Splice_Site 5 38506735 C - 32 82 BRCA TCGA-BH-A0BO MAP3K1 INS Frame_Shift_Ins 5 56183240 - T 20 71 BRCA TCGA-BH-A0BO MAP3K1 INS Frame_Shift_Ins 5 56183296 - G 7 46 BRCA TCGA-BH-A0BO ADAMTS6 SNP Missense_Mutation 5 64747324 C T 31 100 BRCA TCGA-BH-A0BO CPNE5 SNP Silent 6 36713227 G A 42 61 BRCA TCGA-BH-A0BO EFHA2 SNP Silent 8 16944529 A G 1 57 BRCA TCGA-BH-A0BO FBXO25 SNP Missense_Mutation 8 401409 A G 16 56 BRCA TCGA-BH-A0BO CIZ1 INS In_Frame_Ins 9 130953101 - AAC 60 51 BRCA TCGA-BH-A0BP SPTA1 SNP Silent 1 158648298 A T 9 47 BRCA TCGA-BH-A0BP RASAL2 SNP Missense_Mutation 1 178435229 G T 33 100 BRCA TCGA-BH-A0BP OBSCN SNP Silent 1 228432172 C T 25 47 BRCA TCGA-BH-A0BP ACTN2 SNP Splice_Site 1 236914954 T A 59 89 BRCA TCGA-BH-A0BP TRIM58 SNP Missense_Mutation 1 248039226 C T 19 92 BRCA TCGA-BH-A0BP FAM167B SNP Missense_Mutation 1 32713189 G A 38 40 BRCA TCGA-BH-A0BP OR4F5 SNP Missense_Mutation 1 69523 G T 47 72 BRCA TCGA-BH-A0BP OBFC1 SNP Missense_Mutation 10 105658674 G T 35 78 BRCA TCGA-BH-A0BP CAMK1D SNP Silent 10 12595305 G A 38 50 BRCA TCGA-BH-A0BP NEBL SNP Splice_site 10 21157693 G T 46 75 BRCA TCGA-BH-A0BP SVIL SNP Missense_Mutation 10 29839670 G A 37 60 BRCA TCGA-BH-A0BP RTKN2 SNP Missense_Mutation 10 64000922 C G 29 87 BRCA TCGA-BH-A0BP ASCC1 SNP Silent 10 73912678 C T 26 65 BRCA TCGA-BH-A0BP SEC24C SNP Silent 10 75520490 G C 43 51 BRCA TCGA-BH-A0BP PLAU SNP Silent 10 75675049 G A 45 56 BRCA TCGA-BH-A0BP GRID1 SNP Missense_Mutation 10 87362343 C A 22 69 BRCA TCGA-BH-A0BP MUC6 SNP Missense_Mutation 11 1016361 G T 41 59 BRCA TCGA-BH-A0BP NUP160 SNP Missense_Mutation 11 47833723 C T 28 61 BRCA TCGA-BH-A0BP OR51V1 SNP Missense_Mutation 11 5221089 G A 42 54 BRCA TCGA-BH-A0BP OR8H2 SNP Missense_Mutation 11 55872841 G T 44 49 BRCA TCGA-BH-A0BP TRIM6 SNP Missense_Mutation 11 5632304 G A 41 89 BRCA TCGA-BH-A0BP CCND1 SNP Missense_Mutation 11 69465940 C T 27 68 BRCA TCGA-BH-A0BP XRRA1 SNP Missense_Mutation 11 74632307 G A 48 75 BRCA TCGA-BH-A0BP VSIG10 SNP Nonsense_Mutation 12 118511558 G A 39 59 BRCA TCGA-BH-A0BP TCTN2 SNP Missense_Mutation 12 124191321 C G 17 37 BRCA TCGA-BH-A0BP DNAH10 SNP Missense_Mutation 12 124417966 G A 39 99 BRCA TCGA-BH-A0BP IAPP SNP Missense_Mutation 12 21526336 G T 45 39 BRCA TCGA-BH-A0BP NELL2 SNP Missense_Mutation 12 44926499 C T 29 98 BRCA TCGA-BH-A0BP ITGA7 SNP Missense_Mutation 12 56086681 T G 55 71 BRCA TCGA-BH-A0BP LOC643677 SNP Nonsense_Mutation 13 103390877 G C 45 55 BRCA TCGA-BH-A0BP GAS6 SNP Silent 13 114530000 C T 30 48 BRCA TCGA-BH-A0BP SLC15A1 SNP Missense_Mutation 13 99364112 T A 55 90 BRCA TCGA-BH-A0BP OR6S1 SNP Missense_Mutation 14 21109676 T A 58 59 BRCA TCGA-BH-A0BP STRN3 SNP Silent 14 31381308 T C 51 57 BRCA TCGA-BH-A0BP SYNE3 SNP Silent 14 95921720 G T 34 51 BRCA TCGA-BH-A0BP MYO5C SNP Missense_Mutation 15 52497096 C T 30 98 BRCA TCGA-BH-A0BP UBAP1L SNP Missense_Mutation 15 65386863 C G 30 71 BRCA TCGA-BH-A0BP CLPX SNP Missense_Mutation 15 65456441 C G 32 100 BRCA TCGA-BH-A0BP MYO9A SNP Silent 15 72144513 G C 45 60 BRCA TCGA-BH-A0BP HCN4 SNP Silent 15 73635795 C T 31 53 BRCA TCGA-BH-A0BP EFTUD1 SNP Missense_Mutation 15 82533624 C T 30 94 BRCA TCGA-BH-A0BP SH2B1 SNP Missense_Mutation 16 28883552 G A 41 76 BRCA TCGA-BH-A0BP PRRT2 SNP Missense_Mutation 16 29824982 C T 18 53 BRCA TCGA-BH-A0BP MEFV SNP Silent 16 3293384 C T 19 17 BRCA TCGA-BH-A0BP CCDC113 SNP Nonsense_Mutation 16 58287992 G T 33 70 BRCA TCGA-BH-A0BP CTCF SNP Silent 16 67644837 A G 3 53 BRCA TCGA-BH-A0BP COG4 SNP Splice_site 16 70542309 C T 24 97 BRCA TCGA-BH-A0BP CBFA2T3 SNP Missense_Mutation 16 88952427 C T 31 95 BRCA TCGA-BH-A0BP MYH1 SNP Missense_Mutation 17 10408797 C T 29 100 BRCA TCGA-BH-A0BP RAD51D SNP Missense_Mutation 17 33430502 G A 41 82 BRCA TCGA-BH-A0BP MRC2 DEL Frame_Shift_Del 17 60758213 C - 18 50 BRCA TCGA-BH-A0BP ABCA8 SNP Missense_Mutation 17 66925207 T G 51 56 BRCA TCGA-BH-A0BP CD300LF SNP Splice_Site 17 72699172 A T 14 70 BRCA TCGA-BH-A0BP TP53 SNP Missense_Mutation 17 7578534 C G 32 75 BRCA TCGA-BH-A0BP CHD3 SNP Nonsense_Mutation 17 7798780 C T 29 64 BRCA TCGA-BH-A0BP LMAN1 SNP Missense_Mutation 18 57016441 C T 32 68 BRCA TCGA-BH-A0BP WDR83OS SNP Missense_Mutation 19 12779204 T G 55 86 BRCA TCGA-BH-A0BP CACNA1A SNP Missense_Mutation 19 13335577 G A 38 94 BRCA TCGA-BH-A0BP ATP8B3 SNP Missense_Mutation 19 1783122 G C 33 58 BRCA TCGA-BH-A0BP LOC100287226 SNP Missense_Mutation 19 22499779 C T 22 50 BRCA TCGA-BH-A0BP SCN1B SNP Silent 19 35530584 G A 39 45 BRCA TCGA-BH-A0BP HKR1 SNP Splice_Site 19 37853010 G A 33 65 BRCA TCGA-BH-A0BP SHD SNP Missense_Mutation 19 4290544 G A 40 66 BRCA TCGA-BH-A0BP SHC2 SNP Missense_Mutation 19 438818 G T 38 61 BRCA TCGA-BH-A0BP KDM4B SNP Missense_Mutation 19 5131979 C A 22 94 BRCA TCGA-BH-A0BP CEACAM18 SNP Missense_Mutation 19 51986358 A G 11 41 BRCA TCGA-BH-A0BP ZNF614 SNP Missense_Mutation 19 52521663 G A 39 49 BRCA TCGA-BH-A0BP ZNF841 SNP Missense_Mutation 19 52569672 T C 52 48 BRCA TCGA-BH-A0BP CCDC106 SNP Missense_Mutation 19 56164049 G C 33 61 BRCA TCGA-BH-A0BP ZNF835 SNP Missense_Mutation 19 57175732 G C 39 38 BRCA TCGA-BH-A0BP ZNF418 SNP Missense_Mutation 19 58439287 C G 21 53 BRCA TCGA-BH-A0BP MUC16 SNP Missense_Mutation 19 9085910 G T 43 53 BRCA TCGA-BH-A0BP MUC16 SNP Missense_Mutation 19 9090329 T A 55 50 BRCA TCGA-BH-A0BP LRP1B SNP Missense_Mutation 2 141253162 A T 16 56 BRCA TCGA-BH-A0BP KCNH7 SNP Missense_Mutation 2 163302698 A T 2 93 BRCA TCGA-BH-A0BP FIGN SNP Missense_Mutation 2 164467143 G A 44 72 BRCA TCGA-BH-A0BP CHN1 SNP Silent 2 175673727 G A 45 83 BRCA TCGA-BH-A0BP TTN SNP Missense_Mutation 2 179479066 C A 30 100 BRCA TCGA-BH-A0BP NEUROD1 SNP Missense_Mutation 2 182542944 G A 35 75 BRCA TCGA-BH-A0BP PPM1G SNP Silent 2 27606873 G A 40 27 BRCA TCGA-BH-A0BP NLRC4 SNP Missense_Mutation 2 32476391 C T 31 51 BRCA TCGA-BH-A0BP STRN SNP Missense_Mutation 2 37111155 G A 45 80 BRCA TCGA-BH-A0BP MTIF2 SNP Missense_Mutation 2 55463924 C T 29 98 BRCA TCGA-BH-A0BP CTNNA2 SNP Missense_Mutation 2 80620360 C T 30 90 BRCA TCGA-BH-A0BP CD93 SNP Missense_Mutation 20 23065739 C A 26 82 BRCA TCGA-BH-A0BP TGM6 SNP Missense_Mutation 20 2380303 A T 8 74 BRCA TCGA-BH-A0BP DBNDD2 INS Splice_Site 20 44037247 - T 40 76 BRCA TCGA-BH-A0BP SFI1 SNP Silent 22 32009792 C T 32 42 BRCA TCGA-BH-A0BP APOBEC3B SNP Missense_Mutation 22 39382037 G A 37 42 BRCA TCGA-BH-A0BP ATP11C SNP Missense_Mutation 23 138886719 G A 41 94 BRCA TCGA-BH-A0BP SLITRK4 SNP Missense_Mutation 23 142718314 C A 19 97 BRCA TCGA-BH-A0BP ZFX SNP Silent 23 24228434 G A 33 69 BRCA TCGA-BH-A0BP ZNF182 SNP Silent 23 47836619 G A 35 38 BRCA TCGA-BH-A0BP WAS SNP Silent 23 48546700 C T 31 41 BRCA TCGA-BH-A0BP EFCAB12 SNP Missense_Mutation 3 129120504 G T 42 81 BRCA TCGA-BH-A0BP COL6A5 SNP Silent 3 130119918 T C 50 48 BRCA TCGA-BH-A0BP GYG1 SNP Missense_Mutation 3 148744285 G C 33 76 BRCA TCGA-BH-A0BP KNG1 SNP Missense_Mutation 3 186459855 C T 17 50 BRCA TCGA-BH-A0BP C3orf35 SNP Missense_Mutation 3 37476359 G A 35 48 BRCA TCGA-BH-A0BP CCDC13 SNP Missense_Mutation 3 42754772 C G 32 53 BRCA TCGA-BH-A0BP ZNF717 DEL Frame_Shift_Del 3 75788181 TGAG - 55 48 BRCA TCGA-BH-A0BP EPHA3 SNP Splice_site 3 89176423 G T 43 85 BRCA TCGA-BH-A0BP MGARP SNP Missense_Mutation 4 140196454 C T 21 79 BRCA TCGA-BH-A0BP DCHS2 SNP Missense_Mutation 4 155410719 C A 18 51 BRCA TCGA-BH-A0BP EPHA5 SNP Missense_Mutation 4 66467434 C T 31 100 BRCA TCGA-BH-A0BP BMP3 SNP Missense_Mutation 4 81967606 G A 39 68 BRCA TCGA-BH-A0BP HPSE DEL Frame_Shift_Del 4 84216541 TA - 53 64 BRCA TCGA-BH-A0BP SLC6A18 SNP Silent 5 1232966 G T 46 47 BRCA TCGA-BH-A0BP PCDHGA3 SNP Missense_Mutation 5 140725012 T A 50 91 BRCA TCGA-BH-A0BP LPCAT1 SNP Missense_Mutation 5 1463771 C G 30 50 BRCA TCGA-BH-A0BP EGFLAM SNP Silent 5 38407076 C A 21 74 BRCA TCGA-BH-A0BP PDE4D SNP Missense_Mutation 5 58334711 G T 41 99 BRCA TCGA-BH-A0BP PLG SNP Missense_Mutation 6 161137755 C A 18 48 BRCA TCGA-BH-A0BP MAP3K4 DEL Frame_Shift_Del 6 161470713 G - 35 58 BRCA TCGA-BH-A0BP HIST1H1E SNP Missense_Mutation 6 26156800 C T 28 98 BRCA TCGA-BH-A0BP TULP1 SNP Missense_Mutation 6 35477415 C A 32 61 BRCA TCGA-BH-A0BP BRPF3 SNP Missense_Mutation 6 36177594 G C 41 71 BRCA TCGA-BH-A0BP ENPP4 SNP Missense_Mutation 6 46108029 G T 45 99 BRCA TCGA-BH-A0BP DOPEY1 SNP Silent 6 83847715 C T 29 50 BRCA TCGA-BH-A0BP CADPS2 SNP Missense_Mutation 7 122114548 C G 21 100 BRCA TCGA-BH-A0BP ZNF467 SNP Missense_Mutation 7 149463318 C G 30 64 BRCA TCGA-BH-A0BP GIMAP1 SNP Silent 7 150417441 C T 24 66 BRCA TCGA-BH-A0BP HOXA3 SNP Missense_Mutation 7 27148069 C T 27 87 BRCA TCGA-BH-A0BP TAX1BP1 SNP Missense_Mutation 7 27856569 C G 32 58 BRCA TCGA-BH-A0BP GCK SNP Missense_Mutation 7 44189394 T A 57 94 BRCA TCGA-BH-A0BP ENSG00000146677 SNP Missense_Mutation 7 44507638 G C 33 89 BRCA TCGA-BH-A0BP PCLO SNP Silent 7 82764214 G A 39 39 BRCA TCGA-BH-A0BP PEX1 SNP Missense_Mutation 7 92143236 C T 19 65 BRCA TCGA-BH-A0BP ATAD2 SNP Missense_Mutation 8 124359355 C T 32 60 BRCA TCGA-BH-A0BP PARP10 SNP Missense_Mutation 8 145057946 C G 26 55 BRCA TCGA-BH-A0BP CSMD1 SNP Missense_Mutation 8 3216706 C T 19 100 BRCA TCGA-BH-A0BP UNC5D SNP Silent 8 35583857 G A 33 46 BRCA TCGA-BH-A0BP FOCAD SNP Missense_Mutation 9 20862673 C G 32 67 BRCA TCGA-BH-A0BP PTPLAD2 SNP Missense_Mutation 9 21011668 A G 16 68 BRCA TCGA-BH-A0BP IFNA4 SNP Missense_Mutation 9 21187338 C T 30 49 BRCA TCGA-BH-A0BP UNC13B SNP Silent 9 35399191 G A 39 37 BRCA TCGA-BH-A0BP MSMP SNP Silent 9 35754070 C A 30 49 BRCA TCGA-BH-A0BP C9orf41 SNP Nonsense_Mutation 9 77613613 G A 37 60 BRCA TCGA-BH-A0BQ NTNG1 SNP Missense_Mutation 1 107691296 G T 43 93 BRCA TCGA-BH-A0BQ CR2 SNP Missense_Mutation 1 207644142 G C 38 49 BRCA TCGA-BH-A0BQ SUSD4 SNP Missense_Mutation 1 223400952 C T 26 61 BRCA TCGA-BH-A0BQ SLC45A1 SNP Silent 1 8390663 G A 39 48 BRCA TCGA-BH-A0BQ DSCAML1 SNP Silent 11 117351189 C T 23 43 BRCA TCGA-BH-A0BQ PKNOX2 SNP Nonsense_Mutation 11 125237868 C T 27 58 BRCA TCGA-BH-A0BQ ST5 SNP Missense_Mutation 11 8728753 C T 27 85 BRCA TCGA-BH-A0BQ TCTN1 SNP Missense_Mutation 12 111064227 C A 18 52 BRCA TCGA-BH-A0BQ GRIN2B SNP Silent 12 13716941 G A 39 22 BRCA TCGA-BH-A0BQ ZFHX3 SNP Missense_Mutation 16 72923665 A T 12 89 BRCA TCGA-BH-A0BQ DSG3 SNP Nonsense_Mutation 18 29041208 G T 33 72 BRCA TCGA-BH-A0BQ VPS4B SNP Missense_Mutation 18 61067316 C T 19 100 BRCA TCGA-BH-A0BQ SLC27A5 SNP Missense_Mutation 19 59010502 C T 19 91 BRCA TCGA-BH-A0BQ FBN3 SNP Missense_Mutation 19 8201277 C T 25 96 BRCA TCGA-BH-A0BQ IFT172 SNP Missense_Mutation 2 27667302 C A 20 59 BRCA TCGA-BH-A0BQ WDPCP SNP Nonsense_Mutation 2 63714608 G A 47 75 BRCA TCGA-BH-A0BQ DNAH1 SNP Missense_Mutation 3 52402833 G A 37 99 BRCA TCGA-BH-A0BQ BMPER SNP Silent 7 34125684 G A 47 52 BRCA TCGA-BH-A0BR KPRP SNP Missense_Mutation 1 152733184 G A 40 44 BRCA TCGA-BH-A0BR LAMTOR2 INS Frame_Shift_Ins 1 156025183 - G 3 60 BRCA TCGA-BH-A0BR SERPINC1 SNP Missense_Mutation 1 173883952 C T 29 76 BRCA TCGA-BH-A0BR SLC35F3 SNP Missense_Mutation 1 234454539 G T 34 100 BRCA TCGA-BH-A0BR TBCE SNP Missense_Mutation 1 235597591 G A 37 63 BRCA TCGA-BH-A0BR ZNF238 SNP Silent 1 244218261 G A 33 62 BRCA TCGA-BH-A0BR LIN28A SNP Missense_Mutation 1 26737895 C A 25 66 BRCA TCGA-BH-A0BR KIAA1522 SNP Missense_Mutation 1 33236015 C G 30 64 BRCA TCGA-BH-A0BR C10orf32 SNP Missense_Mutation 10 104614108 C T 19 80 BRCA TCGA-BH-A0BR SORCS3 SNP Missense_Mutation 10 107007042 G C 45 98 BRCA TCGA-BH-A0BR TDRD1 SNP Missense_Mutation 10 115981122 C G 32 67 BRCA TCGA-BH-A0BR GATA3 DEL Splice_Site 10 8115697 TTTAGA - 60 60 BRCA TCGA-BH-A0BR TRIM49C SNP Missense_Mutation 11 89774444 G A 39 54 BRCA TCGA-BH-A0BR SART3 SNP Missense_Mutation 12 108954695 G A 41 68 BRCA TCGA-BH-A0BR LOC100287971 SNP Silent 12 11035390 C T 32 42 BRCA TCGA-BH-A0BR TMEM132D SNP Missense_Mutation 12 129566471 C T 29 84 BRCA TCGA-BH-A0BR LOC100289071 SNP Missense_Mutation 12 49524952 C T 31 45 BRCA TCGA-BH-A0BR DUSP6 SNP Missense_Mutation 12 89745744 C T 31 87 BRCA TCGA-BH-A0BR EEA1 SNP Missense_Mutation 12 93205078 C T 31 97 BRCA TCGA-BH-A0BR AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-BH-A0BR CTAGE5 SNP Missense_Mutation 14 39777695 C T 29 86 BRCA TCGA-BH-A0BR LTBP2 SNP Missense_Mutation 14 75017969 C T 23 70 BRCA TCGA-BH-A0BR TSHR SNP Silent 14 81610007 C T 29 51 BRCA TCGA-BH-A0BR FAM174B SNP Missense_Mutation 15 93198621 G A 44 63 BRCA TCGA-BH-A0BR GRB7 SNP Missense_Mutation 17 37898827 G A 37 61 BRCA TCGA-BH-A0BR WIPI1 SNP Missense_Mutation 17 66430737 C T 29 97 BRCA TCGA-BH-A0BR TP53 SNP Missense_Mutation 17 7577118 C A 17 50 BRCA TCGA-BH-A0BR EEF2 SNP Missense_Mutation 19 3982347 C T 31 87 BRCA TCGA-BH-A0BR XIRP2 SNP Missense_Mutation 2 168099578 C T 29 89 BRCA TCGA-BH-A0BR SPHKAP SNP Silent 2 228884721 T C 55 50 BRCA TCGA-BH-A0BR RASGRP3 SNP Silent 2 33749576 C G 29 58 BRCA TCGA-BH-A0BR PUS10 SNP Missense_Mutation 2 61172191 C G 21 62 BRCA TCGA-BH-A0BR JAG1 SNP Silent 20 10627609 G A 45 89 BRCA TCGA-BH-A0BR CHD6 SNP Missense_Mutation 20 40179966 T G 64 72 BRCA TCGA-BH-A0BR RBPJL SNP Missense_Mutation 20 43942234 C T 19 71 BRCA TCGA-BH-A0BR MCCC1 SNP Missense_Mutation 3 182788790 G A 39 85 BRCA TCGA-BH-A0BR HRG SNP Missense_Mutation 3 186395388 G A 39 63 BRCA TCGA-BH-A0BR SGOL1 SNP Missense_Mutation 3 20216373 G A 46 53 BRCA TCGA-BH-A0BR UCP1 SNP Silent 4 141484632 C T 31 47 BRCA TCGA-BH-A0BR C4orf40 SNP Nonsense_Mutation 4 71024261 C T 29 46 BRCA TCGA-BH-A0BR RNF14 DEL Frame_Shift_Del 5 141362978 A - 5 64 BRCA TCGA-BH-A0BR FAM114A2 SNP Missense_Mutation 5 153372571 C T 29 68 BRCA TCGA-BH-A0BR ANKRD55 SNP Missense_Mutation 5 55407411 G A 37 52 BRCA TCGA-BH-A0BR HDAC2 SNP Missense_Mutation 6 114274557 C T 29 100 BRCA TCGA-BH-A0BR TRDN SNP Missense_Mutation 6 123869608 T C 57 58 BRCA TCGA-BH-A0BR ENPP1 SNP Missense_Mutation 6 132207790 C T 26 71 BRCA TCGA-BH-A0BR TMEM151B SNP Missense_Mutation 6 44243324 C T 27 99 BRCA TCGA-BH-A0BR CTTNBP2 SNP Missense_Mutation 7 117420559 T C 52 66 BRCA TCGA-BH-A0BR POLD2 SNP Missense_Mutation 7 44161448 C A 26 95 BRCA TCGA-BH-A0BR SAMD9 SNP Missense_Mutation 7 92734890 C T 19 60 BRCA TCGA-BH-A0BR RNF20 SNP Silent 9 104302598 A C 10 49 BRCA TCGA-BH-A0BR FSD1L SNP Missense_Mutation 9 108226577 A T 16 56 BRCA TCGA-BH-A0BR GNE SNP Missense_Mutation 9 36217505 T C 49 56 BRCA TCGA-BH-A0BR PTPRD SNP Missense_Mutation 9 8518366 G A 40 99 BRCA TCGA-BH-A0BR SPTLC1 SNP Missense_Mutation 9 94817703 C A 17 96 BRCA TCGA-BH-A0BS GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-BH-A0BS PPP1CC SNP Silent 12 111160057 A G 8 56 BRCA TCGA-BH-A0BS RNF6 SNP Missense_Mutation 13 26793710 T C 54 73 BRCA TCGA-BH-A0BS AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-BH-A0BS SERPINA5 SNP Missense_Mutation 14 95058404 A T 1 57 BRCA TCGA-BH-A0BS PAK6 SNP Silent 15 40557142 C T 23 29 BRCA TCGA-BH-A0BS RAB5C SNP Silent 17 40280336 G A 45 55 BRCA TCGA-BH-A0BS FBXW9 SNP Missense_Mutation 19 12802058 C T 19 71 BRCA TCGA-BH-A0BS CKAP2L SNP Missense_Mutation 2 113509932 T G 62 76 BRCA TCGA-BH-A0BS RBMXL3 SNP Missense_Mutation 23 114426765 C T 26 53 BRCA TCGA-BH-A0BS CD40LG SNP Missense_Mutation 23 135732438 G A 35 51 BRCA TCGA-BH-A0BS TMEM27 SNP Missense_Mutation 23 15682471 C T 22 81 BRCA TCGA-BH-A0BS PDCD6IP DEL Frame_Shift_Del 3 33896710 AT - 12 92 BRCA TCGA-BH-A0BS SCAP SNP Missense_Mutation 3 47455768 G A 35 85 BRCA TCGA-BH-A0BS ENSG00000213701 SNP Missense_Mutation 5 96392364 C T 28 66 BRCA TCGA-BH-A0BS TFAP2A SNP Missense_Mutation 6 10398931 A G 8 93 BRCA TCGA-BH-A0BS RTN4IP1 SNP Silent 6 107070840 A G 2 44 BRCA TCGA-BH-A0BS LFNG SNP Silent 7 2566514 C T 30 53 BRCA TCGA-BH-A0BT PPP1R12B SNP Silent 1 202318211 C T 32 78 BRCA TCGA-BH-A0BT SLC30A10 SNP Missense_Mutation 1 220089131 G A 38 57 BRCA TCGA-BH-A0BT RYR2 SNP Missense_Mutation 1 237656376 C A 18 63 BRCA TCGA-BH-A0BT CYP17A1 SNP Missense_Mutation 10 104590523 G T 33 64 BRCA TCGA-BH-A0BT SH3PXD2A SNP Missense_Mutation 10 105362895 T C 51 50 BRCA TCGA-BH-A0BT FGFR2 SNP Silent 10 123239386 G A 46 58 BRCA TCGA-BH-A0BT FAM175B SNP Nonsense_Mutation 10 126523295 C T 29 94 BRCA TCGA-BH-A0BT FAM21C SNP Silent 10 46282632 T C 59 52 BRCA TCGA-BH-A0BT SLC17A6 SNP Missense_Mutation 11 22360147 C T 29 96 BRCA TCGA-BH-A0BT ATHL1 SNP Missense_Mutation 11 289924 T A 62 58 BRCA TCGA-BH-A0BT PLCB3 SNP Missense_Mutation 11 64022269 G A 39 68 BRCA TCGA-BH-A0BT ANKRD13D SNP Silent 11 67057824 C T 23 0 BRCA TCGA-BH-A0BT TMEM80 SNP Splice_site 11 700143 T C 54 59 BRCA TCGA-BH-A0BT NAV3 SNP Missense_Mutation 12 78388624 T C 52 90 BRCA TCGA-BH-A0BT SYT16 SNP Missense_Mutation 14 62547865 G A 38 100 BRCA TCGA-BH-A0BT SNX1 SNP Missense_Mutation 15 64428587 G A 37 79 BRCA TCGA-BH-A0BT C15orf39 SNP Missense_Mutation 15 75501096 C T 27 76 BRCA TCGA-BH-A0BT ABHD2 SNP Missense_Mutation 15 89698616 T A 50 93 BRCA TCGA-BH-A0BT GPR142 SNP Missense_Mutation 17 72368642 A G 12 60 BRCA TCGA-BH-A0BT TP53 SNP Missense_Mutation 17 7578458 G C 39 63 BRCA TCGA-BH-A0BT SOCS6 SNP Missense_Mutation 18 67992682 C T 27 48 BRCA TCGA-BH-A0BT C19orf38 SNP Silent 19 10973880 C G 23 39 BRCA TCGA-BH-A0BT NDUFS7 DEL Frame_Shift_Del 19 1387829 C - 30 45 BRCA TCGA-BH-A0BT CCDC164 SNP Silent 2 26671656 C T 30 28 BRCA TCGA-BH-A0BT SEMA4F SNP Missense_Mutation 2 74907173 C T 22 64 BRCA TCGA-BH-A0BT NOX1 SNP Missense_Mutation 23 100103700 A C 6 69 BRCA TCGA-BH-A0BT PPEF1 SNP Missense_Mutation 23 18824537 C T 32 94 BRCA TCGA-BH-A0BT SHROOM4 SNP Missense_Mutation 23 50350796 G A 37 58 BRCA TCGA-BH-A0BT POPDC2 SNP Silent 3 119378920 C T 25 76 BRCA TCGA-BH-A0BT PIK3CA SNP Missense_Mutation 3 178922328 C G 22 80 BRCA TCGA-BH-A0BT PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A0BT MANF SNP Missense_Mutation 3 51423726 T C 49 61 BRCA TCGA-BH-A0BT WHSC1 SNP Missense_Mutation 4 1980493 G A 39 99 BRCA TCGA-BH-A0BT PCDHB5 SNP Silent 5 140515898 C T 19 46 BRCA TCGA-BH-A0BT FAT2 SNP Missense_Mutation 5 150948446 G A 38 50 BRCA TCGA-BH-A0BT NEDD9 SNP Missense_Mutation 6 11193886 C T 31 80 BRCA TCGA-BH-A0BT PLXNA4 SNP Missense_Mutation 7 131870086 G A 38 67 BRCA TCGA-BH-A0BV INTS7 SNP Missense_Mutation 1 212148582 C T 30 89 BRCA TCGA-BH-A0BV THEMIS2 SNP Missense_Mutation 1 28211957 A T 12 52 BRCA TCGA-BH-A0BV SH2D4B SNP Missense_Mutation 10 82369254 C T 24 84 BRCA TCGA-BH-A0BV PSMD13 SNP Silent 11 244466 G A 33 52 BRCA TCGA-BH-A0BV FOLH1 SNP Silent 11 49175784 T C 51 51 BRCA TCGA-BH-A0BV PPHLN1 SNP Missense_Mutation 12 42835228 A C 4 78 BRCA TCGA-BH-A0BV UBL3 SNP Missense_Mutation 13 30351391 G A 38 81 BRCA TCGA-BH-A0BV OR4M1 SNP Silent 14 20248544 G A 43 54 BRCA TCGA-BH-A0BV CALM1 SNP Silent 14 90870228 C T 23 36 BRCA TCGA-BH-A0BV COX10 INS Frame_Shift_Ins 17 14110164 - T 36 67 BRCA TCGA-BH-A0BV EFCAB13 SNP Splice_site 17 45405748 A T 7 67 BRCA TCGA-BH-A0BV NLRP1 SNP Missense_Mutation 17 5462379 G A 44 78 BRCA TCGA-BH-A0BV CD300A SNP Missense_Mutation 17 72469816 T C 52 51 BRCA TCGA-BH-A0BV GSK3A SNP Missense_Mutation 19 42738787 G A 41 82 BRCA TCGA-BH-A0BV ABCB11 SNP Nonsense_Mutation 2 169869945 G A 47 62 BRCA TCGA-BH-A0BV HEPH SNP Missense_Mutation 23 65418840 G A 45 53 BRCA TCGA-BH-A0BV SEC13 SNP Missense_Mutation 3 10354287 C T 31 93 BRCA TCGA-BH-A0BV PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-BH-A0BV NKIRAS1 SNP Missense_Mutation 3 23934723 C G 30 98 BRCA TCGA-BH-A0BV SNX25 SNP Missense_Mutation 4 186188284 G A 45 95 BRCA TCGA-BH-A0BV ARL10 SNP Silent 5 175798850 G A 34 32 BRCA TCGA-BH-A0BV HIST1H2BC SNP Missense_Mutation 6 26123793 C T 30 100 BRCA TCGA-BH-A0BV ADCYAP1R1 SNP Silent 7 31104525 C T 28 54 BRCA TCGA-BH-A0BV RP1L1 SNP Missense_Mutation 8 10465798 C A 18 43 BRCA TCGA-BH-A0BV CSMD1 SNP Missense_Mutation 8 2975975 T C 59 90 BRCA TCGA-BH-A0BV ZFHX4 SNP Missense_Mutation 8 77766283 G A 38 40 BRCA TCGA-BH-A0BW PPM1J SNP Silent 1 113253093 A G 8 56 BRCA TCGA-BH-A0BW BCL9 DEL Frame_Shift_Del 1 147092549 TG - 55 92 BRCA TCGA-BH-A0BW CRTC2 SNP Silent 1 153923850 C T 25 71 BRCA TCGA-BH-A0BW GORAB SNP Silent 1 170521402 A T 7 52 BRCA TCGA-BH-A0BW PPFIA4 SNP Missense_Mutation 1 203030799 G T 47 100 BRCA TCGA-BH-A0BW FAM177B SNP Missense_Mutation 1 222920385 G A 37 62 BRCA TCGA-BH-A0BW OR2L13 SNP Silent 1 248263169 T C 49 45 BRCA TCGA-BH-A0BW CSMD2 SNP Silent 1 34276437 G T 42 49 BRCA TCGA-BH-A0BW EIF2C3 DEL Frame_Shift_Del 1 36432633 GAAGT - 33 63 BRCA TCGA-BH-A0BW TRPC6 SNP Silent 11 101374902 C T 19 51 BRCA TCGA-BH-A0BW LGALS12 SNP Missense_Mutation 11 63276064 G A 46 56 BRCA TCGA-BH-A0BW DDX55 SNP Missense_Mutation 12 124103295 G C 33 100 BRCA TCGA-BH-A0BW ACRBP SNP Nonsense_Mutation 12 6753326 G T 36 70 BRCA TCGA-BH-A0BW ZNF384 SNP Silent 12 6788134 C T 19 47 BRCA TCGA-BH-A0BW WNK1 SNP Missense_Mutation 12 862832 C G 30 63 BRCA TCGA-BH-A0BW ATP11A SNP Missense_Mutation 13 113512489 C A 26 98 BRCA TCGA-BH-A0BW RB1 INS Frame_Shift_Ins 13 48881488 - AG 29 74 BRCA TCGA-BH-A0BW BAZ1A SNP Nonsense_Mutation 14 35245193 A T 5 88 BRCA TCGA-BH-A0BW DUOX1 SNP Missense_Mutation 15 45428084 C G 22 92 BRCA TCGA-BH-A0BW HSP90AB4P SNP Missense_Mutation 15 58983416 A T 5 62 BRCA TCGA-BH-A0BW BAIAP3 SNP Missense_Mutation 16 1394620 C T 26 49 BRCA TCGA-BH-A0BW DNASE1L2 SNP Splice_Site 16 2287303 G A 44 61 BRCA TCGA-BH-A0BW DNAH9 SNP Missense_Mutation 17 11701070 G C 36 70 BRCA TCGA-BH-A0BW SARM1 DEL Splice_site 17 26723044 A - 5 89 BRCA TCGA-BH-A0BW ARHGAP23 SNP Missense_Mutation 17 36623524 G T 42 59 BRCA TCGA-BH-A0BW BTBD17 SNP Silent 17 72357932 A C 7 45 BRCA TCGA-BH-A0BW LOC100287042 DEL In_Frame_Del 17 73268740 GGA - 43 55 BRCA TCGA-BH-A0BW QRICH2 SNP Missense_Mutation 17 74289101 A C 4 52 BRCA TCGA-BH-A0BW TP53 SNP Splice_site 17 7579312 C G 23 57 BRCA TCGA-BH-A0BW SIRT7 SNP Missense_Mutation 17 79872286 C A 30 97 BRCA TCGA-BH-A0BW ENSG00000173213 DEL Frame_Shift_Del 18 48227 TG - 51 52 BRCA TCGA-BH-A0BW LAMA1 SNP Missense_Mutation 18 7049147 G A 40 100 BRCA TCGA-BH-A0BW ABCA7 SNP Splice_site 19 1041509 G A 44 41 BRCA TCGA-BH-A0BW DPY19L3 SNP Missense_Mutation 19 32928151 G A 42 71 BRCA TCGA-BH-A0BW GPR42 SNP Missense_Mutation 19 35862464 T C 55 84 BRCA TCGA-BH-A0BW LGALS4 SNP Missense_Mutation 19 39299504 C A 24 64 BRCA TCGA-BH-A0BW ZNF780B SNP Missense_Mutation 19 40541342 C T 17 79 BRCA TCGA-BH-A0BW PEG3 SNP Missense_Mutation 19 57335971 G T 47 57 BRCA TCGA-BH-A0BW TPO SNP Missense_Mutation 2 1426879 G A 38 59 BRCA TCGA-BH-A0BW PXDN SNP Missense_Mutation 2 1667407 C A 18 62 BRCA TCGA-BH-A0BW TTN SNP Missense_Mutation 2 179498292 T A 50 94 BRCA TCGA-BH-A0BW NT5C1B-RDH14 SNP Missense_Mutation 2 18765450 T A 64 58 BRCA TCGA-BH-A0BW PMS1 SNP Missense_Mutation 2 190718672 G A 37 76 BRCA TCGA-BH-A0BW ASPRV1 DEL In_Frame_Del 2 70188292 CCCCAGGGA - 26 51 BRCA TCGA-BH-A0BW SEC23B SNP Missense_Mutation 20 18507096 G C 41 98 BRCA TCGA-BH-A0BW MICAL3 SNP Silent 22 18354628 C T 23 34 BRCA TCGA-BH-A0BW CACNA1I SNP Missense_Mutation 22 40066845 C G 17 51 BRCA TCGA-BH-A0BW PNPLA3 DEL Frame_Shift_Del 22 44340631 ACAGG - 6 49 BRCA TCGA-BH-A0BW PNPLA3 DEL Frame_Shift_Del 22 44340638 TT - 60 49 BRCA TCGA-BH-A0BW PNPLA3 INS Frame_Shift_Ins 22 44340640 - A 29 38 BRCA TCGA-BH-A0BW TSC22D3 SNP Missense_Mutation 23 107018552 C G 28 58 BRCA TCGA-BH-A0BW CAPN6 SNP Missense_Mutation 23 110496378 G A 45 87 BRCA TCGA-BH-A0BW DOCK11 SNP Missense_Mutation 23 117782984 C T 31 96 BRCA TCGA-BH-A0BW NHS SNP Missense_Mutation 23 17750565 C T 30 97 BRCA TCGA-BH-A0BW RPS6KA3 SNP Missense_Mutation 23 20195139 G C 45 86 BRCA TCGA-BH-A0BW MED12 DEL Frame_Shift_Del 23 70356831 AGGCA - 7 52 BRCA TCGA-BH-A0BW NLGN3 SNP Silent 23 70386913 T G 55 50 BRCA TCGA-BH-A0BW POLQ SNP Silent 3 121207554 A G 16 34 BRCA TCGA-BH-A0BW DNAH12 SNP Missense_Mutation 3 57401248 A G 14 92 BRCA TCGA-BH-A0BW TBCK SNP Missense_Mutation 4 107230071 G A 42 100 BRCA TCGA-BH-A0BW TTC29 SNP Missense_Mutation 4 147741361 T A 52 52 BRCA TCGA-BH-A0BW ODZ3 SNP Missense_Mutation 4 183696086 G A 34 69 BRCA TCGA-BH-A0BW SLC34A2 DEL In_Frame_Del 4 25678170 GTGCTGCCGCGC - 48 49 BRCA TCGA-BH-A0BW SLC34A2 SNP Missense_Mutation 4 25678181 C T 27 50 BRCA TCGA-BH-A0BW ERVMER34-1 SNP Nonsense_Mutation 4 53610742 G A 38 47 BRCA TCGA-BH-A0BW FRAS1 SNP Nonsense_Mutation 4 79236807 G T 45 58 BRCA TCGA-BH-A0BW WDFY3 SNP Silent 4 85748077 C G 29 68 BRCA TCGA-BH-A0BW MCC DEL In_Frame_Del 5 112824043 GCC - 46 56 BRCA TCGA-BH-A0BW GRPEL2 SNP Missense_Mutation 5 148730786 G A 47 88 BRCA TCGA-BH-A0BW MSH3 SNP Missense_Mutation 5 80064756 T A 52 62 BRCA TCGA-BH-A0BW ALDH8A1 DEL Frame_Shift_Del 6 135263624 AGGCTGGAGGAAGCGA - 7 70 BRCA TCGA-BH-A0BW JARID2 SNP Missense_Mutation 6 15496730 G A 39 69 BRCA TCGA-BH-A0BW APOBEC2 SNP Silent 6 41029073 G T 42 53 BRCA TCGA-BH-A0BW CUL7 SNP Missense_Mutation 6 43016268 T A 55 47 BRCA TCGA-BH-A0BW POLR1C SNP Nonsense_Mutation 6 43487161 C T 19 53 BRCA TCGA-BH-A0BW PKHD1 SNP Missense_Mutation 6 51484286 T A 62 56 BRCA TCGA-BH-A0BW MUC12 SNP Silent 7 100634705 T A 56 50 BRCA TCGA-BH-A0BW CLDN15 SNP Missense_Mutation 7 100876136 C G 31 52 BRCA TCGA-BH-A0BW AGBL3 SNP Missense_Mutation 7 134800290 A G 15 61 BRCA TCGA-BH-A0BW MLL3 SNP Missense_Mutation 7 151871273 C T 18 100 BRCA TCGA-BH-A0BW AMPH SNP Missense_Mutation 7 38424430 G A 40 80 BRCA TCGA-BH-A0BW TRPS1 SNP Missense_Mutation 8 116430602 C G 23 100 BRCA TCGA-BH-A0BW ENPP2 SNP Missense_Mutation 8 120569768 T C 54 93 BRCA TCGA-BH-A0BW AGPAT5 DEL Frame_Shift_Del 8 6590094 TATG - 53 87 BRCA TCGA-BH-A0BW OR1J1 SNP Missense_Mutation 9 125239431 A G 15 62 BRCA TCGA-BH-A0BW SPTAN1 SNP Missense_Mutation 9 131378115 A G 12 91 BRCA TCGA-BH-A0BW CACNA1B SNP Missense_Mutation 9 141012420 A G 5 76 BRCA TCGA-BH-A0BW FAM75D1 SNP Missense_Mutation 9 84608347 C T 22 55 BRCA TCGA-BH-A0BZ PALMD SNP Missense_Mutation 1 100154988 A T 10 68 BRCA TCGA-BH-A0BZ MAN1A2 SNP Nonsense_Mutation 1 118003225 C G 20 73 BRCA TCGA-BH-A0BZ SPAG17 SNP Missense_Mutation 1 118550690 C A 25 71 BRCA TCGA-BH-A0BZ FCGR1A SNP Missense_Mutation 1 149755809 C G 17 51 BRCA TCGA-BH-A0BZ FLG2 SNP Missense_Mutation 1 152328814 C A 22 65 BRCA TCGA-BH-A0BZ CDK11B SNP Splice_Site 1 1573246 C A 32 93 BRCA TCGA-BH-A0BZ UCK2 SNP Silent 1 165865490 C T 32 82 BRCA TCGA-BH-A0BZ BLZF1 SNP Missense_Mutation 1 169351347 C G 20 84 BRCA TCGA-BH-A0BZ SELP SNP Missense_Mutation 1 169581541 C T 17 72 BRCA TCGA-BH-A0BZ SELL SNP Missense_Mutation 1 169672428 C G 30 86 BRCA TCGA-BH-A0BZ TNR SNP Silent 1 175331827 G A 38 51 BRCA TCGA-BH-A0BZ CEP350 SNP Missense_Mutation 1 180000592 G C 33 87 BRCA TCGA-BH-A0BZ KIAA1614 SNP Missense_Mutation 1 180885366 C G 17 76 BRCA TCGA-BH-A0BZ HMCN1 SNP Missense_Mutation 1 186014823 C T 23 83 BRCA TCGA-BH-A0BZ ZC3H11A SNP Missense_Mutation 1 203821334 C T 29 83 BRCA TCGA-BH-A0BZ RAB3GAP2 SNP Splice_site 1 220345979 C T 24 93 BRCA TCGA-BH-A0BZ WNT3A SNP Silent 1 228246812 C T 19 69 BRCA TCGA-BH-A0BZ TRIM67 SNP Splice_site 1 231334915 G A 35 100 BRCA TCGA-BH-A0BZ RYR2 SNP Missense_Mutation 1 237693803 C A 18 78 BRCA TCGA-BH-A0BZ OR2L2 SNP Missense_Mutation 1 248201729 C A 32 86 BRCA TCGA-BH-A0BZ CSMD2 SNP Missense_Mutation 1 33990553 C T 26 68 BRCA TCGA-BH-A0BZ ZMYM6 SNP Missense_Mutation 1 35453751 G C 33 53 BRCA TCGA-BH-A0BZ GNL2 SNP Missense_Mutation 1 38040001 C A 22 58 BRCA TCGA-BH-A0BZ BRDT SNP Missense_Mutation 1 92446610 C G 24 100 BRCA TCGA-BH-A0BZ TMEM201 SNP Nonsense_Mutation 1 9656053 C G 17 73 BRCA TCGA-BH-A0BZ XPNPEP1 SNP Missense_Mutation 10 111646073 C T 32 73 BRCA TCGA-BH-A0BZ ST8SIA6 DEL Frame_Shift_Del 10 17432557 ATGCCAT - 4 59 BRCA TCGA-BH-A0BZ YME1L1 SNP Missense_Mutation 10 27434428 T G 64 58 BRCA TCGA-BH-A0BZ ZNF438 SNP Missense_Mutation 10 31137957 C A 32 31 BRCA TCGA-BH-A0BZ CREM SNP Missense_Mutation 10 35500663 C G 21 88 BRCA TCGA-BH-A0BZ ERCC6 SNP Missense_Mutation 10 50681546 G A 42 100 BRCA TCGA-BH-A0BZ MBL2 SNP Missense_Mutation 10 54528028 T G 59 42 BRCA TCGA-BH-A0BZ ECD SNP Missense_Mutation 10 74923668 T G 50 50 BRCA TCGA-BH-A0BZ KIAA0913 SNP Silent 10 75561184 G A 36 89 BRCA TCGA-BH-A0BZ LRIT2 SNP Missense_Mutation 10 85982013 G T 35 60 BRCA TCGA-BH-A0BZ LIPA SNP Missense_Mutation 10 90986702 G A 36 92 BRCA TCGA-BH-A0BZ KIF20B INS Frame_Shift_Ins 10 91498778 - A 41 65 BRCA TCGA-BH-A0BZ CYP2C9 SNP Missense_Mutation 10 96748684 C G 24 48 BRCA TCGA-BH-A0BZ ZC3H12C SNP Missense_Mutation 11 110034079 A C 2 51 BRCA TCGA-BH-A0BZ SIDT2 SNP Silent 11 117054809 G C 42 55 BRCA TCGA-BH-A0BZ GRAMD1B SNP Splice_Site 11 123476187 G A 44 90 BRCA TCGA-BH-A0BZ BDNF SNP Missense_Mutation 11 27695705 C G 17 54 BRCA TCGA-BH-A0BZ OR5L1 SNP Missense_Mutation 11 55579684 A T 16 52 BRCA TCGA-BH-A0BZ OR5AS1 SNP Missense_Mutation 11 55798071 G C 48 99 BRCA TCGA-BH-A0BZ OR9G4 SNP Missense_Mutation 11 56510423 C G 28 57 BRCA TCGA-BH-A0BZ CD5 DEL Frame_Shift_Del 11 60890420 GCAA - 42 49 BRCA TCGA-BH-A0BZ STIP1 SNP Missense_Mutation 11 63960739 C G 24 44 BRCA TCGA-BH-A0BZ TPP1 SNP Missense_Mutation 11 6638925 C A 21 54 BRCA TCGA-BH-A0BZ PITPNM1 SNP Silent 11 67270037 C T 25 58 BRCA TCGA-BH-A0BZ ARRB1 SNP Missense_Mutation 11 74995294 G A 33 67 BRCA TCGA-BH-A0BZ MYO7A SNP Missense_Mutation 11 76918405 G C 36 73 BRCA TCGA-BH-A0BZ KCTD21 SNP Nonsense_Mutation 11 77885303 C A 30 81 BRCA TCGA-BH-A0BZ UTP20 SNP Silent 12 101699822 C T 17 52 BRCA TCGA-BH-A0BZ PAH SNP Missense_Mutation 12 103234267 G T 43 95 BRCA TCGA-BH-A0BZ ALDH1L2 SNP Missense_Mutation 12 105456710 C A 19 64 BRCA TCGA-BH-A0BZ PRDM4 SNP Missense_Mutation 12 108133303 C G 17 60 BRCA TCGA-BH-A0BZ TCHP SNP Missense_Mutation 12 110352416 A C 7 51 BRCA TCGA-BH-A0BZ MLL2 SNP Silent 12 49424516 G T 45 75 BRCA TCGA-BH-A0BZ KRT82 DEL Frame_Shift_Del 12 52800015 CT - 20 66 BRCA TCGA-BH-A0BZ ZC3H10 SNP Missense_Mutation 12 56515095 G T 39 95 BRCA TCGA-BH-A0BZ ATP5B SNP Missense_Mutation 12 57036286 C G 30 100 BRCA TCGA-BH-A0BZ SRGAP1 SNP Missense_Mutation 12 64456793 G T 33 100 BRCA TCGA-BH-A0BZ LPAR5 SNP Silent 12 6730247 C T 21 50 BRCA TCGA-BH-A0BZ SGCG SNP Missense_Mutation 13 23808841 A C 6 52 BRCA TCGA-BH-A0BZ CPB2 SNP Missense_Mutation 13 46627925 G C 41 96 BRCA TCGA-BH-A0BZ PCDH17 SNP Missense_Mutation 13 58240645 A C 7 90 BRCA TCGA-BH-A0BZ PCDH17 SNP Missense_Mutation 13 58298937 A C 10 91 BRCA TCGA-BH-A0BZ TEP1 SNP Missense_Mutation 14 20837883 T A 54 72 BRCA TCGA-BH-A0BZ OR6S1 SNP Missense_Mutation 14 21109448 G T 43 55 BRCA TCGA-BH-A0BZ TM9SF1 SNP Missense_Mutation 14 24658635 G C 35 79 BRCA TCGA-BH-A0BZ NYNRIN SNP Missense_Mutation 14 24886547 G C 43 78 BRCA TCGA-BH-A0BZ SAMD4A SNP Missense_Mutation 14 55231251 T C 52 66 BRCA TCGA-BH-A0BZ PRKCH SNP Missense_Mutation 14 62014470 A G 5 80 BRCA TCGA-BH-A0BZ NRXN3 SNP Missense_Mutation 14 79175993 G T 33 100 BRCA TCGA-BH-A0BZ EML5 SNP Missense_Mutation 14 89091378 G A 42 96 BRCA TCGA-BH-A0BZ APBA2 SNP Missense_Mutation 15 29397678 A G 9 74 BRCA TCGA-BH-A0BZ PPIP5K1 SNP Missense_Mutation 15 43873233 A T 8 91 BRCA TCGA-BH-A0BZ SQRDL SNP Missense_Mutation 15 45951281 G A 47 95 BRCA TCGA-BH-A0BZ MYO5C SNP Silent 15 52517715 G A 37 46 BRCA TCGA-BH-A0BZ TLE3 SNP Missense_Mutation 15 70346800 G C 44 76 BRCA TCGA-BH-A0BZ BLM DEL In_Frame_Del 15 91293258 GAAAGT - 41 60 BRCA TCGA-BH-A0BZ EEF2K SNP Missense_Mutation 16 22260122 A C 5 89 BRCA TCGA-BH-A0BZ SRRM2 SNP Missense_Mutation 16 2815562 C G 22 69 BRCA TCGA-BH-A0BZ ALDOA SNP Missense_Mutation 16 30079970 G C 33 97 BRCA TCGA-BH-A0BZ ZNF423 SNP Silent 16 49669760 G A 40 36 BRCA TCGA-BH-A0BZ CPNE2 SNP Missense_Mutation 16 57153125 G C 33 100 BRCA TCGA-BH-A0BZ CDH8 SNP Missense_Mutation 16 61854993 T G 62 91 BRCA TCGA-BH-A0BZ ZDHHC1 SNP Missense_Mutation 16 67428930 C G 19 49 BRCA TCGA-BH-A0BZ MYH1 SNP Missense_Mutation 17 10405125 T A 50 93 BRCA TCGA-BH-A0BZ COX10 SNP Missense_Mutation 17 13980191 G A 34 50 BRCA TCGA-BH-A0BZ TOM1L2 SNP Silent 17 17786172 G A 41 62 BRCA TCGA-BH-A0BZ ANKRD13B SNP Missense_Mutation 17 27934851 C T 27 63 BRCA TCGA-BH-A0BZ GPR179 SNP Missense_Mutation 17 36487341 A T 7 90 BRCA TCGA-BH-A0BZ ZZEF1 DEL Frame_Shift_Del 17 3920660 ACTACCTTCTCCC - 2 40 BRCA TCGA-BH-A0BZ KRTAP17-1 SNP Missense_Mutation 17 39471833 A G 7 68 BRCA TCGA-BH-A0BZ ZZEF1 SNP Splice_Site 17 3980054 C G 24 97 BRCA TCGA-BH-A0BZ HAP1 SNP Silent 17 39889034 T C 57 64 BRCA TCGA-BH-A0BZ COASY SNP Missense_Mutation 17 40715169 G C 34 54 BRCA TCGA-BH-A0BZ ABCC3 SNP Missense_Mutation 17 48746861 G T 44 67 BRCA TCGA-BH-A0BZ BZRAP1 SNP Missense_Mutation 17 56389025 C G 29 58 BRCA TCGA-BH-A0BZ CLTC SNP Missense_Mutation 17 57738819 C A 30 100 BRCA TCGA-BH-A0BZ C17orf80 SNP Missense_Mutation 17 71232219 A G 14 49 BRCA TCGA-BH-A0BZ ST6GALNAC1 SNP Silent 17 74639652 G C 41 55 BRCA TCGA-BH-A0BZ SAT2 SNP Missense_Mutation 17 7530899 T A 54 70 BRCA TCGA-BH-A0BZ ALYREF INS In_Frame_Ins 17 79847099 - CAT 42 82 BRCA TCGA-BH-A0BZ CEP192 SNP Missense_Mutation 18 13087076 T C 50 57 BRCA TCGA-BH-A0BZ HRH4 SNP Missense_Mutation 18 22056805 T C 52 88 BRCA TCGA-BH-A0BZ PTPRM SNP Splice_Site 18 8076452 G T 36 79 BRCA TCGA-BH-A0BZ GIPC1 SNP Missense_Mutation 19 14589304 C T 18 89 BRCA TCGA-BH-A0BZ NWD1 SNP Splice_site 19 16874756 G C 43 79 BRCA TCGA-BH-A0BZ ATP8B3 SNP Silent 19 1799950 G T 33 55 BRCA TCGA-BH-A0BZ PDE4C SNP Silent 19 18322000 C T 27 19 BRCA TCGA-BH-A0BZ ZNF676 SNP Silent 19 22362986 G T 46 47 BRCA TCGA-BH-A0BZ LGALS13 SNP Missense_Mutation 19 40095264 C G 32 56 BRCA TCGA-BH-A0BZ CYP2A7 SNP Missense_Mutation 19 41383175 T C 56 55 BRCA TCGA-BH-A0BZ SYMPK SNP Nonsense_Mutation 19 46341763 C A 29 94 BRCA TCGA-BH-A0BZ FUT2 SNP Silent 19 49206873 G A 42 56 BRCA TCGA-BH-A0BZ SIGLEC10 SNP Missense_Mutation 19 51920020 G T 45 53 BRCA TCGA-BH-A0BZ ZSCAN5B SNP Silent 19 56704353 T G 59 41 BRCA TCGA-BH-A0BZ ZNF419 SNP Silent 19 58005131 T C 51 46 BRCA TCGA-BH-A0BZ ZNF552 SNP Nonsense_Mutation 19 58319602 T A 54 76 BRCA TCGA-BH-A0BZ ZNF552 INS Frame_Shift_Ins 19 58319607 - GA 51 75 BRCA TCGA-BH-A0BZ ZNF587 SNP Missense_Mutation 19 58352673 G A 43 49 BRCA TCGA-BH-A0BZ ZNF837 SNP Silent 19 58879905 G A 43 54 BRCA TCGA-BH-A0BZ LPIN1 SNP Missense_Mutation 2 11911547 C T 28 63 BRCA TCGA-BH-A0BZ GALNT3 SNP Missense_Mutation 2 166611534 G A 48 69 BRCA TCGA-BH-A0BZ FASTKD1 SNP Missense_Mutation 2 170394566 C G 32 52 BRCA TCGA-BH-A0BZ TTN SNP Missense_Mutation 2 179645892 T C 52 93 BRCA TCGA-BH-A0BZ COQ10B SNP Missense_Mutation 2 198334804 C G 20 100 BRCA TCGA-BH-A0BZ APOB SNP Missense_Mutation 2 21230517 C T 25 58 BRCA TCGA-BH-A0BZ APOB SNP Missense_Mutation 2 21239435 C G 29 68 BRCA TCGA-BH-A0BZ SP100 SNP Missense_Mutation 2 231331031 G A 33 52 BRCA TCGA-BH-A0BZ ANKMY1 SNP Nonsense_Mutation 2 241463462 C A 29 72 BRCA TCGA-BH-A0BZ GPR113 SNP Missense_Mutation 2 26534831 T C 58 78 BRCA TCGA-BH-A0BZ KCNK3 SNP Missense_Mutation 2 26950777 G A 38 81 BRCA TCGA-BH-A0BZ CCDC121 DEL Frame_Shift_Del 2 27851347 G - 35 58 BRCA TCGA-BH-A0BZ BRE SNP Nonsense_Mutation 2 28521317 C G 17 72 BRCA TCGA-BH-A0BZ EHD3 DEL Frame_Shift_Del 2 31484518 GCCGGATCGA - 42 60 BRCA TCGA-BH-A0BZ PRKD3 SNP Silent 2 37501724 A G 5 50 BRCA TCGA-BH-A0BZ PLEKHH2 SNP Missense_Mutation 2 43937232 A T 1 56 BRCA TCGA-BH-A0BZ PREPL SNP Silent 2 44559718 T A 63 53 BRCA TCGA-BH-A0BZ MSH2 SNP Missense_Mutation 2 47657032 G A 43 65 BRCA TCGA-BH-A0BZ C2orf73 SNP Missense_Mutation 2 54562103 C A 25 52 BRCA TCGA-BH-A0BZ MPHOSPH10 SNP Missense_Mutation 2 71360505 A C 3 49 BRCA TCGA-BH-A0BZ TMEM131 SNP Nonsense_Mutation 2 98409038 C A 29 76 BRCA TCGA-BH-A0BZ CNGA3 SNP Missense_Mutation 2 98994171 G C 33 54 BRCA TCGA-BH-A0BZ SDCBP2 SNP Missense_Mutation 20 1300251 G C 42 52 BRCA TCGA-BH-A0BZ SLC4A11 SNP Missense_Mutation 20 3208935 G A 43 100 BRCA TCGA-BH-A0BZ RALY SNP Missense_Mutation 20 32663708 C A 26 77 BRCA TCGA-BH-A0BZ NCOA6 SNP Missense_Mutation 20 33369936 A C 1 69 BRCA TCGA-BH-A0BZ NFS1 SNP Missense_Mutation 20 34278343 C A 29 67 BRCA TCGA-BH-A0BZ C20orf152 SNP Nonsense_Mutation 20 34618474 T G 50 52 BRCA TCGA-BH-A0BZ PLTP SNP Splice_site 20 44527701 C T 30 86 BRCA TCGA-BH-A0BZ KCNQ2 SNP Missense_Mutation 20 62070997 G T 38 72 BRCA TCGA-BH-A0BZ APP DEL Splice_Site 21 27347382 C - 18 93 BRCA TCGA-BH-A0BZ KRTAP10-4 SNP Missense_Mutation 21 45993856 C T 22 52 BRCA TCGA-BH-A0BZ EMID1 SNP Missense_Mutation 22 29611547 G T 44 81 BRCA TCGA-BH-A0BZ MBTPS2 SNP Missense_Mutation 23 21886678 G C 43 88 BRCA TCGA-BH-A0BZ DMD SNP Missense_Mutation 23 32503137 C A 30 67 BRCA TCGA-BH-A0BZ HDAC6 SNP Missense_Mutation 23 48661392 G A 43 74 BRCA TCGA-BH-A0BZ HUWE1 SNP Missense_Mutation 23 53617397 A T 16 55 BRCA TCGA-BH-A0BZ NLGN3 SNP Missense_Mutation 23 70384048 G C 33 63 BRCA TCGA-BH-A0BZ ITM2A SNP Nonsense_Mutation 23 78616643 C T 30 52 BRCA TCGA-BH-A0BZ HEG1 SNP Nonsense_Mutation 3 124731512 G A 45 59 BRCA TCGA-BH-A0BZ PIK3R4 SNP Missense_Mutation 3 130463374 C G 32 100 BRCA TCGA-BH-A0BZ CDV3 SNP Nonsense_Mutation 3 133306840 C T 21 96 BRCA TCGA-BH-A0BZ LEKR1 SNP Missense_Mutation 3 156547155 G C 33 74 BRCA TCGA-BH-A0BZ IL1RAP SNP Missense_Mutation 3 190366442 G A 39 89 BRCA TCGA-BH-A0BZ ITGA9 SNP Missense_Mutation 3 37778446 G A 36 50 BRCA TCGA-BH-A0BZ ZNF445 SNP Missense_Mutation 3 44488954 G A 44 51 BRCA TCGA-BH-A0BZ FYCO1 SNP Missense_Mutation 3 46008278 C G 30 74 BRCA TCGA-BH-A0BZ LAMB2 SNP Splice_Site 3 49166019 C T 24 90 BRCA TCGA-BH-A0BZ CACNA2D2 SNP Missense_Mutation 3 50412233 A C 6 84 BRCA TCGA-BH-A0BZ ANXA5 SNP Silent 4 122590856 G C 43 57 BRCA TCGA-BH-A0BZ LSM6 SNP Silent 4 147104112 G A 34 63 BRCA TCGA-BH-A0BZ CPEB2 SNP Silent 4 15054069 C G 28 56 BRCA TCGA-BH-A0BZ TRIM2 SNP Missense_Mutation 4 154243810 G T 41 100 BRCA TCGA-BH-A0BZ WDFY3 SNP Missense_Mutation 4 85672736 G A 34 98 BRCA TCGA-BH-A0BZ SLC12A7 SNP Silent 5 1073784 G A 44 53 BRCA TCGA-BH-A0BZ KIF3A SNP Missense_Mutation 5 132038596 C A 32 52 BRCA TCGA-BH-A0BZ FSTL4 SNP Silent 5 132535018 C T 17 55 BRCA TCGA-BH-A0BZ TGFBI SNP Missense_Mutation 5 135388753 C G 30 56 BRCA TCGA-BH-A0BZ PCDHB3 SNP Silent 5 140480788 T C 57 27 BRCA TCGA-BH-A0BZ PCDHGB6 SNP Missense_Mutation 5 140789181 T G 52 91 BRCA TCGA-BH-A0BZ PCDHGC4 INS In_Frame_Ins 5 140867095 - ATG 29 74 BRCA TCGA-BH-A0BZ SLIT3 SNP Missense_Mutation 5 168199824 C T 27 100 BRCA TCGA-BH-A0BZ HRH2 SNP Missense_Mutation 5 175110861 G A 38 98 BRCA TCGA-BH-A0BZ DMGDH SNP Missense_Mutation 5 78338282 C A 20 76 BRCA TCGA-BH-A0BZ SYNE1 DEL Frame_Shift_Del 6 152651269 AAGCCAAGGGGTCAAGGTGTGGGGC - 13 61 BRCA TCGA-BH-A0BZ MRPL18 SNP Missense_Mutation 6 160212096 A T 16 44 BRCA TCGA-BH-A0BZ HIST1H2BC SNP Missense_Mutation 6 26123825 A G 3 91 BRCA TCGA-BH-A0BZ WDR46 SNP Missense_Mutation 6 33248475 C G 22 96 BRCA TCGA-BH-A0BZ KIFC1 SNP Missense_Mutation 6 33371093 C G 29 75 BRCA TCGA-BH-A0BZ UBR2 SNP Silent 6 42652568 A G 7 42 BRCA TCGA-BH-A0BZ RPS17P5 SNP Missense_Mutation 6 50825005 A G 2 65 BRCA TCGA-BH-A0BZ GSTA2 SNP Missense_Mutation 6 52616434 G A 36 53 BRCA TCGA-BH-A0BZ HCRTR2 SNP Missense_Mutation 6 55120040 G A 40 82 BRCA TCGA-BH-A0BZ PDIA4 SNP Missense_Mutation 7 148718210 C T 30 86 BRCA TCGA-BH-A0BZ SLC4A2 SNP Missense_Mutation 7 150769218 G C 44 47 BRCA TCGA-BH-A0BZ INTS1 SNP Silent 7 1527563 C T 23 63 BRCA TCGA-BH-A0BZ LSM5 SNP Missense_Mutation 7 32528913 C T 29 87 BRCA TCGA-BH-A0BZ OGDH SNP Missense_Mutation 7 44737330 G T 43 100 BRCA TCGA-BH-A0BZ CACNA2D1 SNP Missense_Mutation 7 81598259 A G 4 83 BRCA TCGA-BH-A0BZ COL1A2 SNP Missense_Mutation 7 94043009 C T 21 100 BRCA TCGA-BH-A0BZ TG SNP Splice_site 8 134034236 G A 42 66 BRCA TCGA-BH-A0BZ MYOM2 SNP Missense_Mutation 8 2026951 C G 23 49 BRCA TCGA-BH-A0BZ NKX3-1 SNP Missense_Mutation 8 23538848 C G 25 63 BRCA TCGA-BH-A0BZ TEX15 SNP Missense_Mutation 8 30705392 G T 34 44 BRCA TCGA-BH-A0BZ PPAPDC1B DEL Splice_Site 8 38123635 CCATAGCCTGAGTACTTTGCTTA - 30 51 BRCA TCGA-BH-A0BZ IKBKB SNP Missense_Mutation 8 42171889 G T 33 85 BRCA TCGA-BH-A0BZ MTFR1 SNP Missense_Mutation 8 66619371 G C 33 58 BRCA TCGA-BH-A0BZ MYBL1 SNP Missense_Mutation 8 67484779 G C 41 94 BRCA TCGA-BH-A0BZ GABBR2 SNP Silent 9 101470750 G A 40 53 BRCA TCGA-BH-A0BZ TMEM246 SNP Missense_Mutation 9 104238305 T C 59 56 BRCA TCGA-BH-A0BZ TLR4 SNP Nonsense_Mutation 9 120475509 C A 29 32 BRCA TCGA-BH-A0BZ TLR4 SNP Missense_Mutation 9 120476776 C A 25 57 BRCA TCGA-BH-A0BZ DBC1 SNP Missense_Mutation 9 122000956 G A 40 87 BRCA TCGA-BH-A0BZ SKA2L SNP Missense_Mutation 9 125524220 G C 35 57 BRCA TCGA-BH-A0BZ IFNB1 SNP Silent 9 21077514 G A 33 61 BRCA TCGA-BH-A0BZ SIT1 SNP Missense_Mutation 9 35650368 T A 51 55 BRCA TCGA-BH-A0BZ OR13J1 SNP Silent 9 35869718 C T 22 58 BRCA TCGA-BH-A0C0 LOC100289369 SNP Missense_Mutation 1 154918042 G A 46 52 BRCA TCGA-BH-A0C0 UBQLN4 SNP Missense_Mutation 1 156011319 A G 8 86 BRCA TCGA-BH-A0C0 RGS4 SNP Nonsense_Mutation 1 163044344 T A 59 51 BRCA TCGA-BH-A0C0 POU2F1 SNP Silent 1 167382293 C A 22 50 BRCA TCGA-BH-A0C0 LAMC2 SNP Missense_Mutation 1 183177174 C T 23 57 BRCA TCGA-BH-A0C0 HHAT SNP Missense_Mutation 1 210573999 A C 9 74 BRCA TCGA-BH-A0C0 NSL1 SNP Missense_Mutation 1 212911865 G C 48 63 BRCA TCGA-BH-A0C0 CCDC27 SNP Missense_Mutation 1 3672038 G A 37 41 BRCA TCGA-BH-A0C0 GRIK3 SNP Missense_Mutation 1 37307422 T A 54 90 BRCA TCGA-BH-A0C0 USP1 SNP Missense_Mutation 1 62916175 G T 45 64 BRCA TCGA-BH-A0C0 GPAM SNP Missense_Mutation 10 113915699 G T 35 93 BRCA TCGA-BH-A0C0 FRMD4A SNP Missense_Mutation 10 13804668 C A 19 76 BRCA TCGA-BH-A0C0 RET SNP Missense_Mutation 10 43597801 C A 30 64 BRCA TCGA-BH-A0C0 CYP2C8 DEL In_Frame_Del 10 96797047 TCCTGCACAAATTCGTTT - 54 50 BRCA TCGA-BH-A0C0 MMP8 SNP Missense_Mutation 11 102589268 G T 47 100 BRCA TCGA-BH-A0C0 BCL9L SNP Missense_Mutation 11 118770742 G C 43 83 BRCA TCGA-BH-A0C0 OR8U1 SNP Missense_Mutation 11 56143625 C A 21 64 BRCA TCGA-BH-A0C0 ODZ4 SNP Missense_Mutation 11 78423693 G T 48 86 BRCA TCGA-BH-A0C0 NUAK1 SNP Missense_Mutation 12 106461617 A T 7 93 BRCA TCGA-BH-A0C0 RASAL1 SNP Missense_Mutation 12 113552621 C G 30 76 BRCA TCGA-BH-A0C0 AKAP3 SNP Splice_Site 12 4747364 T G 55 75 BRCA TCGA-BH-A0C0 KCNA1 SNP Missense_Mutation 12 5021590 C T 27 98 BRCA TCGA-BH-A0C0 COL4A1 SNP Splice_Site 13 110847369 C A 18 85 BRCA TCGA-BH-A0C0 ALG5 SNP Missense_Mutation 13 37569662 G T 33 53 BRCA TCGA-BH-A0C0 OR4N2 SNP Missense_Mutation 14 20296167 T A 55 73 BRCA TCGA-BH-A0C0 ERO1L SNP Missense_Mutation 14 53119001 T C 62 90 BRCA TCGA-BH-A0C0 ITGA11 SNP Missense_Mutation 15 68643690 A G 4 90 BRCA TCGA-BH-A0C0 ACSM3 SNP Missense_Mutation 16 20788842 C T 30 54 BRCA TCGA-BH-A0C0 MBTPS1 SNP Missense_Mutation 16 84088111 C A 22 51 BRCA TCGA-BH-A0C0 SMYD4 SNP Missense_Mutation 17 1703856 G C 46 58 BRCA TCGA-BH-A0C0 MAPT SNP Missense_Mutation 17 44073950 G A 40 98 BRCA TCGA-BH-A0C0 TTLL6 SNP Missense_Mutation 17 46862448 G T 42 48 BRCA TCGA-BH-A0C0 AMZ2 SNP Missense_Mutation 17 66246405 A G 16 77 BRCA TCGA-BH-A0C0 ABCA9 SNP Missense_Mutation 17 66982401 T C 52 74 BRCA TCGA-BH-A0C0 TP53 DEL Frame_Shift_Del 17 7579359 G - 39 49 BRCA TCGA-BH-A0C0 ZNF397 SNP Silent 18 32822449 T A 55 52 BRCA TCGA-BH-A0C0 GP6 SNP Silent 19 55539160 T A 57 19 BRCA TCGA-BH-A0C0 C19orf21 SNP Silent 19 757540 G A 34 54 BRCA TCGA-BH-A0C0 MUC16 SNP Silent 19 9019327 G C 47 51 BRCA TCGA-BH-A0C0 VIT SNP Silent 2 36994370 T C 55 46 BRCA TCGA-BH-A0C0 DEFB119 SNP Missense_Mutation 20 29976953 G A 40 59 BRCA TCGA-BH-A0C0 TRPC4AP SNP Missense_Mutation 20 33600860 A T 3 60 BRCA TCGA-BH-A0C0 TRAPPC10 SNP Missense_Mutation 21 45499985 C T 26 97 BRCA TCGA-BH-A0C0 THOC5 SNP Missense_Mutation 22 29945112 G C 40 66 BRCA TCGA-BH-A0C0 GLUD2 SNP Missense_Mutation 23 120182736 A G 12 73 BRCA TCGA-BH-A0C0 PTCHD1 SNP Missense_Mutation 23 23411647 T A 56 87 BRCA TCGA-BH-A0C0 FBXO40 SNP Missense_Mutation 3 121340395 T G 55 54 BRCA TCGA-BH-A0C0 EFHB SNP Missense_Mutation 3 19959819 C T 31 49 BRCA TCGA-BH-A0C0 CAMK2D SNP Nonsense_Mutation 4 114438800 A T 16 50 BRCA TCGA-BH-A0C0 CCDC110 SNP Missense_Mutation 4 186379415 C T 29 65 BRCA TCGA-BH-A0C0 ATOH1 SNP Missense_Mutation 4 94750648 A C 5 74 BRCA TCGA-BH-A0C0 C5orf54 SNP Missense_Mutation 5 159822112 C T 30 58 BRCA TCGA-BH-A0C0 RANBP17 SNP Missense_Mutation 5 170380678 G A 45 79 BRCA TCGA-BH-A0C0 SEMA5A SNP Missense_Mutation 5 9197331 T A 64 62 BRCA TCGA-BH-A0C0 C6orf170 SNP Missense_Mutation 6 121481215 G A 45 84 BRCA TCGA-BH-A0C0 EYA4 SNP Missense_Mutation 6 133777745 C T 26 73 BRCA TCGA-BH-A0C0 STX11 SNP Missense_Mutation 6 144507849 C A 26 49 BRCA TCGA-BH-A0C0 FBXO5 SNP Missense_Mutation 6 153293436 T G 57 45 BRCA TCGA-BH-A0C0 OR10C1 SNP Missense_Mutation 6 29407949 G A 46 53 BRCA TCGA-BH-A0C0 PTCHD4 SNP Missense_Mutation 6 47976671 T C 61 65 BRCA TCGA-BH-A0C0 CREB3L2 SNP Missense_Mutation 7 137600703 G C 45 65 BRCA TCGA-BH-A0C0 FERD3L SNP Missense_Mutation 7 19184943 C G 30 70 BRCA TCGA-BH-A0C0 SORBS3 SNP Missense_Mutation 8 22419432 C A 17 49 BRCA TCGA-BH-A0C0 TACC1 SNP Silent 8 38677317 C A 21 55 BRCA TCGA-BH-A0C0 OR1L8 SNP Missense_Mutation 9 125329851 C A 30 57 BRCA TCGA-BH-A0C0 TAF1L SNP Missense_Mutation 9 32633233 A T 7 71 BRCA TCGA-BH-A0C0 ANKRD20A4 SNP Missense_Mutation 9 69385951 G A 41 74 BRCA TCGA-BH-A0C1 CASZ1 SNP Missense_Mutation 1 10714168 T C 57 91 BRCA TCGA-BH-A0C1 HIST2H2BE SNP Missense_Mutation 1 149858180 G A 39 78 BRCA TCGA-BH-A0C1 PODN SNP Silent 1 53537273 C T 24 78 BRCA TCGA-BH-A0C1 CACHD1 SNP Splice_site 1 65120486 G A 47 100 BRCA TCGA-BH-A0C1 COL17A1 SNP Nonsense_Mutation 10 105801282 G A 48 74 BRCA TCGA-BH-A0C1 YME1L1 SNP Missense_Mutation 10 27436575 G A 40 62 BRCA TCGA-BH-A0C1 FBXO18 SNP Silent 10 5945053 G A 45 63 BRCA TCGA-BH-A0C1 YAP1 SNP Missense_Mutation 11 102100570 C T 26 100 BRCA TCGA-BH-A0C1 OR4S2 SNP Missense_Mutation 11 55418854 G A 42 49 BRCA TCGA-BH-A0C1 RIC3 SNP Silent 11 8161556 G A 40 56 BRCA TCGA-BH-A0C1 TMEM132C SNP Missense_Mutation 12 128899678 G A 38 51 BRCA TCGA-BH-A0C1 BAZ2A DEL Frame_Shift_Del 12 56994194 GATATCCTCCTGGGAGTCGGAGA - 45 64 BRCA TCGA-BH-A0C1 KIAA1199 SNP Silent 15 81171141 C T 31 44 BRCA TCGA-BH-A0C1 VPS35 SNP Missense_Mutation 16 46695632 C T 25 100 BRCA TCGA-BH-A0C1 TRADD SNP Missense_Mutation 16 67190466 G A 38 52 BRCA TCGA-BH-A0C1 CDH1 DEL Frame_Shift_Del 16 68842414 C - 30 99 BRCA TCGA-BH-A0C1 ERBB2 SNP Missense_Mutation 17 37881000 G C 48 85 BRCA TCGA-BH-A0C1 FSD1 SNP Silent 19 4311945 G A 46 53 BRCA TCGA-BH-A0C1 HIF3A SNP Missense_Mutation 19 46842838 G A 43 53 BRCA TCGA-BH-A0C1 LINC00085 INS Silent 19 52197329 - AG 31 44 BRCA TCGA-BH-A0C1 ZNF841 SNP Missense_Mutation 19 52569331 A C 6 60 BRCA TCGA-BH-A0C1 ATG16L1 SNP Missense_Mutation 2 234201936 G A 45 96 BRCA TCGA-BH-A0C1 RUNX1 SNP Missense_Mutation 21 36252958 C T 26 100 BRCA TCGA-BH-A0C1 PCNT SNP Missense_Mutation 21 47836277 G A 38 48 BRCA TCGA-BH-A0C1 MID1 SNP Missense_Mutation 23 10534972 C T 31 96 BRCA TCGA-BH-A0C1 MAGEA12 SNP Silent 23 151899975 T G 56 55 BRCA TCGA-BH-A0C1 STARD8 SNP Silent 23 67940160 C T 19 47 BRCA TCGA-BH-A0C1 CBLB SNP Missense_Mutation 3 105397361 G A 46 87 BRCA TCGA-BH-A0C1 SCAP SNP Missense_Mutation 3 47467065 G A 42 100 BRCA TCGA-BH-A0C1 PRMT10 SNP Silent 4 148575485 T C 52 47 BRCA TCGA-BH-A0C1 ODZ3 SNP Missense_Mutation 4 183721107 G A 38 73 BRCA TCGA-BH-A0C1 MAN2A1 SNP Silent 5 109183450 C T 32 55 BRCA TCGA-BH-A0C1 VWA7 SNP Missense_Mutation 6 31741200 C T 23 94 BRCA TCGA-BH-A0C1 HECW1 SNP Missense_Mutation 7 43484146 G T 42 74 BRCA TCGA-BH-A0C1 GRID2IP SNP Silent 7 6541690 C T 27 44 BRCA TCGA-BH-A0C1 EEF1D SNP Missense_Mutation 8 144662795 C T 29 88 BRCA TCGA-BH-A0C1 IARS SNP Silent 9 95027830 T A 49 43 BRCA TCGA-BH-A0C3 KIRREL SNP Silent 1 158059318 G T 46 52 BRCA TCGA-BH-A0C3 UCK2 SNP Silent 1 165872480 G C 40 12 BRCA TCGA-BH-A0C3 HNRNPR SNP Missense_Mutation 1 23650213 T G 63 89 BRCA TCGA-BH-A0C3 IGF1R SNP Splice_site 15 99456511 G A 35 73 BRCA TCGA-BH-A0C3 PKD1 SNP Missense_Mutation 16 2161666 G A 43 54 BRCA TCGA-BH-A0C3 TP53 SNP Splice_site 17 7578371 C T 21 72 BRCA TCGA-BH-A0C3 EPG5 SNP Missense_Mutation 18 43534880 G A 36 48 BRCA TCGA-BH-A0C3 RUNX1 SNP Missense_Mutation 21 36231791 T C 50 87 BRCA TCGA-BH-A0C3 AMELX SNP Nonsense_Mutation 23 11316986 C T 17 70 BRCA TCGA-BH-A0C3 NHS DEL Frame_Shift_Del 23 17745442 TA - 53 53 BRCA TCGA-BH-A0C3 ITPR1 SNP Silent 3 4856841 T C 55 30 BRCA TCGA-BH-A0C3 HAVCR1 SNP Silent 5 156482387 G A 40 16 BRCA TCGA-BH-A0C3 RPS6KA2 SNP Missense_Mutation 6 166912078 G A 40 97 BRCA TCGA-BH-A0C3 LFNG SNP Splice_site 7 2564376 G A 39 51 BRCA TCGA-BH-A0C3 TNFRSF10C SNP Silent 8 22973124 T C 57 49 BRCA TCGA-BH-A0C3 ZNF462 SNP Missense_Mutation 9 109771874 G A 40 90 BRCA TCGA-BH-A0C7 SPEN SNP Silent 1 16261573 G A 34 61 BRCA TCGA-BH-A0C7 C1orf112 SNP Missense_Mutation 1 169770035 A T 4 50 BRCA TCGA-BH-A0C7 BSND SNP Missense_Mutation 1 55474123 C T 26 52 BRCA TCGA-BH-A0C7 GATA3 SNP Missense_Mutation 10 8111503 G A 35 100 BRCA TCGA-BH-A0C7 GATA3 DEL Frame_Shift_Del 10 8111506 AT - 4 91 BRCA TCGA-BH-A0C7 SETD8 SNP Missense_Mutation 12 123892232 C A 18 65 BRCA TCGA-BH-A0C7 RB1 DEL Frame_Shift_Del 13 48936989 C - 18 62 BRCA TCGA-BH-A0C7 ABCC4 SNP Missense_Mutation 13 95696580 G T 46 98 BRCA TCGA-BH-A0C7 DCAF11 SNP Missense_Mutation 14 24586235 G T 41 76 BRCA TCGA-BH-A0C7 ZNF423 SNP Missense_Mutation 16 49671762 G A 38 58 BRCA TCGA-BH-A0C7 CCDC135 SNP Missense_Mutation 16 57760088 C T 23 61 BRCA TCGA-BH-A0C7 CNGB1 SNP Missense_Mutation 16 57994814 C T 22 60 BRCA TCGA-BH-A0C7 ADAMTS18 SNP Silent 16 77353947 G A 37 46 BRCA TCGA-BH-A0C7 DPEP1 SNP Missense_Mutation 16 89696849 G T 48 50 BRCA TCGA-BH-A0C7 ERN1 SNP Missense_Mutation 17 62130285 C T 26 100 BRCA TCGA-BH-A0C7 ARRDC2 SNP Silent 19 18119536 G A 37 37 BRCA TCGA-BH-A0C7 C19orf77 SNP Missense_Mutation 19 3478909 T A 56 62 BRCA TCGA-BH-A0C7 ZNF414 SNP Silent 19 8577297 C A 25 66 BRCA TCGA-BH-A0C7 SCN1A SNP Missense_Mutation 2 166900252 G T 35 68 BRCA TCGA-BH-A0C7 COL4A3 SNP Missense_Mutation 2 228137792 C T 19 67 BRCA TCGA-BH-A0C7 DGKD SNP Silent 2 234343513 G T 48 53 BRCA TCGA-BH-A0C7 SSTR4 SNP Silent 20 23016498 C T 19 51 BRCA TCGA-BH-A0C7 MRAP SNP Missense_Mutation 21 33686921 C G 30 47 BRCA TCGA-BH-A0C7 NF2 SNP Missense_Mutation 22 30054223 G C 33 54 BRCA TCGA-BH-A0C7 RBMXL3 SNP Missense_Mutation 23 114424941 G A 38 51 BRCA TCGA-BH-A0C7 SLC9A6 SNP Silent 23 135112303 T C 52 55 BRCA TCGA-BH-A0C7 L1CAM SNP Missense_Mutation 23 153134145 G A 40 60 BRCA TCGA-BH-A0C7 ZNF41 SNP Missense_Mutation 23 47307013 T C 49 61 BRCA TCGA-BH-A0C7 COL6A5 SNP Missense_Mutation 3 130095337 C A 25 52 BRCA TCGA-BH-A0C7 IFT80 SNP Missense_Mutation 3 160000320 G A 33 98 BRCA TCGA-BH-A0C7 KCNMB2 SNP Nonsense_Mutation 3 178560678 C T 17 98 BRCA TCGA-BH-A0C7 SULT1E1 SNP Silent 4 70707775 T C 52 53 BRCA TCGA-BH-A0C7 RANBP17 SNP Missense_Mutation 5 170336737 G A 40 60 BRCA TCGA-BH-A0C7 IYD SNP Missense_Mutation 6 150710610 C T 19 69 BRCA TCGA-BH-A0C7 CDC5L SNP Missense_Mutation 6 44413549 G A 38 67 BRCA TCGA-BH-A0C7 GPR116 SNP Missense_Mutation 6 46826804 T C 53 48 BRCA TCGA-BH-A0C7 EFHC1 SNP Missense_Mutation 6 52285258 T G 64 58 BRCA TCGA-BH-A0C7 DDX43 DEL Frame_Shift_Del 6 74123768 A - 11 43 BRCA TCGA-BH-A0C7 ANKRD6 SNP Missense_Mutation 6 90276715 T C 58 70 BRCA TCGA-BH-A0C7 TRRAP SNP Missense_Mutation 7 98529083 G A 39 98 BRCA TCGA-BH-A0C7 KCNB2 SNP Nonsense_Mutation 8 73480344 C A 20 55 BRCA TCGA-BH-A0DD PRPF38B SNP Missense_Mutation 1 109238699 C G 17 100 BRCA TCGA-BH-A0DD PTGS2 SNP Missense_Mutation 1 186646005 C T 19 67 BRCA TCGA-BH-A0DD SDCCAG8 SNP Missense_Mutation 1 243434319 A G 3 58 BRCA TCGA-BH-A0DD DNAH10 SNP Silent 12 124323215 C T 27 59 BRCA TCGA-BH-A0DD CACNA1C SNP Missense_Mutation 12 2602428 C T 19 99 BRCA TCGA-BH-A0DD CHD4 SNP Missense_Mutation 12 6710887 C T 32 100 BRCA TCGA-BH-A0DD PTPRR SNP Missense_Mutation 12 71286478 G A 46 55 BRCA TCGA-BH-A0DD NUMB SNP Silent 14 73753912 G T 47 72 BRCA TCGA-BH-A0DD DISP2 SNP Silent 15 40660863 C T 27 47 BRCA TCGA-BH-A0DD RAB11FIP3 SNP Missense_Mutation 16 476430 C G 26 40 BRCA TCGA-BH-A0DD ABCA9 SNP Silent 17 67004302 A G 8 49 BRCA TCGA-BH-A0DD BTBD17 SNP Missense_Mutation 17 72352897 C A 31 99 BRCA TCGA-BH-A0DD BTBD17 SNP Silent 17 72353000 C T 32 98 BRCA TCGA-BH-A0DD PKN1 SNP Missense_Mutation 19 14581448 G A 38 87 BRCA TCGA-BH-A0DD SIN3B SNP Missense_Mutation 19 16965008 G A 38 97 BRCA TCGA-BH-A0DD CEACAM6 SNP Missense_Mutation 19 42270133 C T 19 51 BRCA TCGA-BH-A0DD MARK4 SNP Missense_Mutation 19 45766396 C T 18 79 BRCA TCGA-BH-A0DD FCGRT SNP Missense_Mutation 19 50017150 T A 54 52 BRCA TCGA-BH-A0DD GZMM SNP Nonsense_Mutation 19 549171 C T 21 52 BRCA TCGA-BH-A0DD NOSTRIN DEL Frame_Shift_Del 2 169711935 AG - 7 78 BRCA TCGA-BH-A0DD FASTKD1 SNP Missense_Mutation 2 170403132 C T 31 92 BRCA TCGA-BH-A0DD IDH1 SNP Missense_Mutation 2 209106864 T C 57 94 BRCA TCGA-BH-A0DD EPB41L1 SNP Missense_Mutation 20 34761811 G A 39 61 BRCA TCGA-BH-A0DD MYL9 SNP Silent 20 35177631 C T 27 42 BRCA TCGA-BH-A0DD STAG1 SNP Splice_Site 3 136076560 A G 14 89 BRCA TCGA-BH-A0DD PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A0DD BSN SNP Missense_Mutation 3 49689964 C T 31 99 BRCA TCGA-BH-A0DD FREM3 SNP Nonsense_Mutation 4 144545442 C T 30 51 BRCA TCGA-BH-A0DD POLR2B SNP Splice_Site 4 57896566 G T 44 91 BRCA TCGA-BH-A0DD C5orf65 SNP Missense_Mutation 5 138729303 C T 18 55 BRCA TCGA-BH-A0DD EBF1 SNP Silent 5 158523388 G A 40 50 BRCA TCGA-BH-A0DD CD180 SNP Missense_Mutation 5 66479382 G A 44 67 BRCA TCGA-BH-A0DD ZNF366 SNP Missense_Mutation 5 71739899 T A 55 54 BRCA TCGA-BH-A0DD E2F3 DEL Frame_Shift_Del 6 20488429 AAAC - 1 88 BRCA TCGA-BH-A0DD FAM185A SNP Silent 7 102390050 G T 48 69 BRCA TCGA-BH-A0DD RAB2A DEL Frame_Shift_Del 8 61531179 A - 5 88 BRCA TCGA-BH-A0DD LHX6 SNP Silent 9 124989262 C T 24 52 BRCA TCGA-BH-A0DD LAMC3 SNP Silent 9 133945108 C T 19 75 BRCA TCGA-BH-A0DD RPS6 SNP Missense_Mutation 9 19380191 C T 29 87 BRCA TCGA-BH-A0DE DENND4B SNP Silent 1 153916788 G A 40 55 BRCA TCGA-BH-A0DE OR10J5 SNP Missense_Mutation 1 159505444 C T 21 91 BRCA TCGA-BH-A0DE RPL5 DEL Frame_Shift_Del 1 93299205 TATCATT - 49 52 BRCA TCGA-BH-A0DE NFKB2 SNP Missense_Mutation 10 104158032 C T 32 96 BRCA TCGA-BH-A0DE MLL SNP Splice_Site 11 118371701 G A 35 100 BRCA TCGA-BH-A0DE BCL9L SNP Missense_Mutation 11 118778200 G T 42 77 BRCA TCGA-BH-A0DE GLIPR1 SNP Missense_Mutation 12 75875683 C T 19 51 BRCA TCGA-BH-A0DE TSC22D1 SNP Missense_Mutation 13 45148301 G T 33 77 BRCA TCGA-BH-A0DE LINGO1 SNP Missense_Mutation 15 77907723 C T 31 100 BRCA TCGA-BH-A0DE ZCCHC14 SNP Silent 16 87446722 G A 47 50 BRCA TCGA-BH-A0DE GRIN2A SNP Nonsense_Mutation 16 9923469 C T 26 98 BRCA TCGA-BH-A0DE TUBD1 SNP Missense_Mutation 17 57958454 G A 43 97 BRCA TCGA-BH-A0DE H3F3B SNP Missense_Mutation 17 73774845 A C 11 48 BRCA TCGA-BH-A0DE WIZ SNP Missense_Mutation 19 15559037 C T 30 58 BRCA TCGA-BH-A0DE ARHGAP35 SNP Silent 19 47492898 G A 40 2 BRCA TCGA-BH-A0DE ZNF812 SNP Missense_Mutation 19 9801784 A G 4 28 BRCA TCGA-BH-A0DE THSD7B SNP Missense_Mutation 2 138425422 A G 14 65 BRCA TCGA-BH-A0DE PLCB4 SNP Missense_Mutation 20 9417740 G T 34 97 BRCA TCGA-BH-A0DE GPR50 SNP Missense_Mutation 23 150349052 C T 23 56 BRCA TCGA-BH-A0DE PLXNB3 SNP Missense_Mutation 23 153041490 C T 19 94 BRCA TCGA-BH-A0DE RBM10 SNP Silent 23 47028870 C T 19 48 BRCA TCGA-BH-A0DE EIF2A SNP Missense_Mutation 3 150301029 G A 47 88 BRCA TCGA-BH-A0DE PIK3CA SNP Missense_Mutation 3 178936092 A C 11 90 BRCA TCGA-BH-A0DE CSRNP1 SNP Missense_Mutation 3 39184985 T C 49 52 BRCA TCGA-BH-A0DE PXK SNP Missense_Mutation 3 58398643 G A 34 91 BRCA TCGA-BH-A0DE AFF1 SNP Silent 4 87968539 C T 24 40 BRCA TCGA-BH-A0DE PCDHGC3 SNP Missense_Mutation 5 140856115 T G 61 56 BRCA TCGA-BH-A0DE MLL3 INS Frame_Shift_Ins 7 151878893 - A 45 100 BRCA TCGA-BH-A0DE MAGI2 SNP Missense_Mutation 7 78636505 C T 32 98 BRCA TCGA-BH-A0DG CRNN SNP Missense_Mutation 1 152382164 G T 41 61 BRCA TCGA-BH-A0DG SLC39A1 SNP Missense_Mutation 1 153935082 A G 7 63 BRCA TCGA-BH-A0DG CASQ1 SNP Missense_Mutation 1 160160636 T C 57 75 BRCA TCGA-BH-A0DG DNM3 SNP Missense_Mutation 1 172277938 G A 42 70 BRCA TCGA-BH-A0DG AIDA SNP Missense_Mutation 1 222843570 G C 45 73 BRCA TCGA-BH-A0DG KDM4A SNP Missense_Mutation 1 44126037 A G 4 77 BRCA TCGA-BH-A0DG RNF207 SNP Silent 1 6272428 C T 31 45 BRCA TCGA-BH-A0DG SCD SNP Splice_site 10 102108102 G C 43 68 BRCA TCGA-BH-A0DG GATA3 INS Frame_Shift_Ins 10 8115874 - G 31 85 BRCA TCGA-BH-A0DG TNNT3 SNP Missense_Mutation 11 1954967 G A 40 94 BRCA TCGA-BH-A0DG ME3 SNP Missense_Mutation 11 86382866 C T 26 49 BRCA TCGA-BH-A0DG KIAA1033 SNP Missense_Mutation 12 105521054 C G 29 97 BRCA TCGA-BH-A0DG POLE SNP Missense_Mutation 12 133249314 C A 30 72 BRCA TCGA-BH-A0DG PLBD1 SNP Missense_Mutation 12 14689538 C T 32 51 BRCA TCGA-BH-A0DG ATP2A3 SNP Missense_Mutation 17 3831310 G A 37 50 BRCA TCGA-BH-A0DG YES1 SNP Missense_Mutation 18 743380 C G 17 100 BRCA TCGA-BH-A0DG SHANK1 SNP Missense_Mutation 19 51207386 G T 48 55 BRCA TCGA-BH-A0DG C3 SNP Missense_Mutation 19 6697369 A C 10 51 BRCA TCGA-BH-A0DG STXBP2 SNP Splice_site 19 7704692 A C 3 84 BRCA TCGA-BH-A0DG ZDBF2 SNP Missense_Mutation 2 207175935 C T 31 53 BRCA TCGA-BH-A0DG FAM217B SNP Missense_Mutation 20 58519516 G A 37 49 BRCA TCGA-BH-A0DG KRTAP24-1 SNP Missense_Mutation 21 31655201 G A 44 54 BRCA TCGA-BH-A0DG MAGEH1 SNP Missense_Mutation 23 55478908 C A 24 51 BRCA TCGA-BH-A0DG GPR143 SNP Missense_Mutation 23 9707633 C T 29 68 BRCA TCGA-BH-A0DG CYFIP2 SNP Missense_Mutation 5 156760407 G T 41 100 BRCA TCGA-BH-A0DG SRD5A1 SNP Missense_Mutation 5 6663054 T C 50 21 BRCA TCGA-BH-A0DG PKHD1 SNP Splice_Site 6 51512917 C G 32 82 BRCA TCGA-BH-A0DG WDR86 SNP Missense_Mutation 7 151093118 G A 38 27 BRCA TCGA-BH-A0DG SOX7 SNP Silent 8 10583590 G A 39 47 BRCA TCGA-BH-A0DG GOLGA2 SNP Missense_Mutation 9 131038206 G A 44 54 BRCA TCGA-BH-A0DH MPC2 SNP Missense_Mutation 1 167889845 C T 29 94 BRCA TCGA-BH-A0DH HMCN1 SNP Missense_Mutation 1 186072719 G A 45 76 BRCA TCGA-BH-A0DH C1orf222 SNP Missense_Mutation 1 1888168 G A 40 65 BRCA TCGA-BH-A0DH OBSCN SNP Missense_Mutation 1 228412196 G A 38 37 BRCA TCGA-BH-A0DH GUCA2B SNP Silent 1 42621219 C T 19 6 BRCA TCGA-BH-A0DH RAD54L SNP Missense_Mutation 1 46738424 T C 51 77 BRCA TCGA-BH-A0DH SEC24C SNP Missense_Mutation 10 75527697 G A 41 100 BRCA TCGA-BH-A0DH RASGRP2 SNP Missense_Mutation 11 64497587 C T 19 68 BRCA TCGA-BH-A0DH LEPREL2 SNP Missense_Mutation 12 6939134 C T 31 62 BRCA TCGA-BH-A0DH IGDCC3 SNP Missense_Mutation 15 65621396 C T 30 53 BRCA TCGA-BH-A0DH SCNN1B SNP Splice_site 16 23366809 C T 23 63 BRCA TCGA-BH-A0DH SH2B1 SNP Missense_Mutation 16 28878286 C T 31 78 BRCA TCGA-BH-A0DH CCDC102A SNP Missense_Mutation 16 57552033 C T 27 76 BRCA TCGA-BH-A0DH CTCF SNP Missense_Mutation 16 67645922 C A 29 99 BRCA TCGA-BH-A0DH DNAH9 SNP Missense_Mutation 17 11597194 A G 3 69 BRCA TCGA-BH-A0DH LASP1 SNP Missense_Mutation 17 37074895 A C 10 89 BRCA TCGA-BH-A0DH ALOX12 SNP Missense_Mutation 17 6900318 G C 35 42 BRCA TCGA-BH-A0DH CBX2 SNP Silent 17 77758181 C T 27 61 BRCA TCGA-BH-A0DH CBX8 SNP Missense_Mutation 17 77768660 C T 28 63 BRCA TCGA-BH-A0DH TBCD SNP Missense_Mutation 17 80878479 G A 35 68 BRCA TCGA-BH-A0DH TWSG1 SNP Missense_Mutation 18 9396368 G A 39 97 BRCA TCGA-BH-A0DH MLL4 SNP Silent 19 36220104 C T 19 38 BRCA TCGA-BH-A0DH STXBP2 SNP Silent 19 7707366 C T 19 47 BRCA TCGA-BH-A0DH PTPN4 DNP Missense_Mutation 2 120702704 AA CC 1 82 BRCA TCGA-BH-A0DH UBR3 SNP Missense_Mutation 2 170897490 G A 38 48 BRCA TCGA-BH-A0DH CERKL SNP Missense_Mutation 2 182438569 G T 43 91 BRCA TCGA-BH-A0DH PLCG1 SNP Splice_Site 20 39796490 A G 7 89 BRCA TCGA-BH-A0DH STAU1 SNP Missense_Mutation 20 47736592 T G 60 79 BRCA TCGA-BH-A0DH SLC25A18 SNP Silent 22 18065387 C T 19 50 BRCA TCGA-BH-A0DH PLXNB2 SNP Silent 22 50720382 G A 45 49 BRCA TCGA-BH-A0DH MAGEC1 SNP Missense_Mutation 23 140995480 C G 29 45 BRCA TCGA-BH-A0DH GPR50 SNP Silent 23 150349192 C T 23 45 BRCA TCGA-BH-A0DH LOC347376 SNP Missense_Mutation 23 50648708 G T 39 54 BRCA TCGA-BH-A0DH MUC4 SNP Silent 3 195513168 A T 9 54 BRCA TCGA-BH-A0DH FAT4 SNP Missense_Mutation 4 126239428 C T 30 68 BRCA TCGA-BH-A0DH LETM1 SNP Missense_Mutation 4 1838164 A T 10 88 BRCA TCGA-BH-A0DH TMCO6 SNP Silent 5 140023514 G A 46 52 BRCA TCGA-BH-A0DH REV3L SNP Missense_Mutation 6 111697571 C T 29 64 BRCA TCGA-BH-A0DH LPA SNP Nonsense_Mutation 6 161015051 G A 45 64 BRCA TCGA-BH-A0DH MUC12 SNP Splice_site 7 100661916 G A 45 53 BRCA TCGA-BH-A0DH AUTS2 SNP Missense_Mutation 7 70252221 G T 41 96 BRCA TCGA-BH-A0DH ODF2 SNP Silent 9 131256860 G A 37 40 BRCA TCGA-BH-A0DH MELK SNP Missense_Mutation 9 36651752 G A 45 77 BRCA TCGA-BH-A0DI GPSM2 SNP Splice_site 1 109440722 G T 45 100 BRCA TCGA-BH-A0DI HMCN1 SNP Missense_Mutation 1 186024579 G C 37 60 BRCA TCGA-BH-A0DI INPP5B SNP Silent 1 38354001 T C 51 44 BRCA TCGA-BH-A0DI PDCD11 SNP Missense_Mutation 10 105181309 C G 24 64 BRCA TCGA-BH-A0DI CCDC147 SNP Silent 10 106166473 G T 45 74 BRCA TCGA-BH-A0DI OR8K1 SNP Missense_Mutation 11 56114328 C T 29 54 BRCA TCGA-BH-A0DI FGF3 SNP Missense_Mutation 11 69625120 C T 19 48 BRCA TCGA-BH-A0DI FGD4 SNP Silent 12 32791747 G A 48 39 BRCA TCGA-BH-A0DI PRMT8 SNP Missense_Mutation 12 3702343 C T 27 82 BRCA TCGA-BH-A0DI CNTN1 SNP Missense_Mutation 12 41337803 C T 19 95 BRCA TCGA-BH-A0DI GALNTL1 SNP Missense_Mutation 14 69813893 G A 38 49 BRCA TCGA-BH-A0DI CDH8 SNP Missense_Mutation 16 61687928 C T 32 100 BRCA TCGA-BH-A0DI MYO19 SNP Silent 17 34863744 T C 50 39 BRCA TCGA-BH-A0DI TP53 SNP Missense_Mutation 17 7577517 A T 12 86 BRCA TCGA-BH-A0DI LDLR SNP Silent 19 11221353 C T 19 37 BRCA TCGA-BH-A0DI ZNF93 SNP Nonsense_Mutation 19 20045077 C G 29 53 BRCA TCGA-BH-A0DI HNRNPUL1 SNP Missense_Mutation 19 41811663 C A 24 65 BRCA TCGA-BH-A0DI TTN SNP Missense_Mutation 2 179410619 C T 20 87 BRCA TCGA-BH-A0DI SLC2A10 SNP Missense_Mutation 20 45354472 G T 41 58 BRCA TCGA-BH-A0DI PIK3IP1 SNP Missense_Mutation 22 31685334 C T 30 95 BRCA TCGA-BH-A0DI TRO SNP Splice_Site 23 54950989 G T 44 57 BRCA TCGA-BH-A0DI P2RY13 SNP Missense_Mutation 3 151047297 C G 32 56 BRCA TCGA-BH-A0DI EGF SNP Silent 4 110882135 A G 2 59 BRCA TCGA-BH-A0DI PDCL2 SNP Missense_Mutation 4 56428697 C T 19 79 BRCA TCGA-BH-A0DI SLC6A3 SNP Missense_Mutation 5 1414821 C A 30 65 BRCA TCGA-BH-A0DI ANXA6 SNP Missense_Mutation 5 150483207 C T 27 92 BRCA TCGA-BH-A0DI HMMR SNP Silent 5 162910044 G A 33 63 BRCA TCGA-BH-A0DI PIK3R1 DEL In_Frame_Del 5 67591095 TGAACAGCATTAAACCAGACCTTATCCAGC - 51 90 BRCA TCGA-BH-A0DI CDK7 SNP Missense_Mutation 5 68565064 G C 45 96 BRCA TCGA-BH-A0DI RPS17P5 SNP Missense_Mutation 6 50825307 G C 44 41 BRCA TCGA-BH-A0DI MRPL32 SNP Missense_Mutation 7 42972017 C T 31 55 BRCA TCGA-BH-A0DI PHTF2 SNP Missense_Mutation 7 77569914 C T 29 100 BRCA TCGA-BH-A0DI ANKS6 SNP Missense_Mutation 9 101546367 G A 38 91 BRCA TCGA-BH-A0DI ZNF483 SNP Missense_Mutation 9 114305275 G C 41 77 BRCA TCGA-BH-A0DK TMEM167B SNP Missense_Mutation 1 109637064 T G 51 61 BRCA TCGA-BH-A0DK LRIF1 DEL In_Frame_Del 1 111494337 GGAGTATCA - 47 73 BRCA TCGA-BH-A0DK OLFML3 SNP Missense_Mutation 1 114523891 C G 28 56 BRCA TCGA-BH-A0DK ILF2 SNP Nonsense_Mutation 1 153635021 C A 29 90 BRCA TCGA-BH-A0DK DCST1 SNP Missense_Mutation 1 155014231 G T 45 56 BRCA TCGA-BH-A0DK SPATA21 SNP Silent 1 16735620 T C 56 43 BRCA TCGA-BH-A0DK TNR SNP Missense_Mutation 1 175334374 A G 11 76 BRCA TCGA-BH-A0DK SLC26A9 SNP Missense_Mutation 1 205897041 C G 30 93 BRCA TCGA-BH-A0DK NSL1 SNP Missense_Mutation 1 212911824 T C 56 64 BRCA TCGA-BH-A0DK HLX SNP Missense_Mutation 1 221055680 C T 19 100 BRCA TCGA-BH-A0DK PSEN2 SNP Missense_Mutation 1 227076718 C T 27 85 BRCA TCGA-BH-A0DK C1orf57 SNP Silent 1 233091325 C T 30 65 BRCA TCGA-BH-A0DK HNRNPU SNP Silent 1 245020096 G T 43 51 BRCA TCGA-BH-A0DK HNRNPU SNP Missense_Mutation 1 245020102 C G 32 71 BRCA TCGA-BH-A0DK KIAA1522 SNP Missense_Mutation 1 33237128 C T 30 63 BRCA TCGA-BH-A0DK DOCK7 SNP Nonsense_Mutation 1 63005436 G T 45 86 BRCA TCGA-BH-A0DK PKN2 SNP Missense_Mutation 1 89298781 C T 19 63 BRCA TCGA-BH-A0DK CALHM2 SNP Missense_Mutation 10 105209118 G A 41 53 BRCA TCGA-BH-A0DK SLK SNP Missense_Mutation 10 105762296 A T 13 50 BRCA TCGA-BH-A0DK SLC25A16 SNP Nonsense_Mutation 10 70243321 A C 8 55 BRCA TCGA-BH-A0DK GATA3 INS Frame_Shift_Ins 10 8115941 - T 24 54 BRCA TCGA-BH-A0DK GRID1 SNP Missense_Mutation 10 87898775 C T 19 98 BRCA TCGA-BH-A0DK RNF214 SNP Missense_Mutation 11 117152922 C A 21 71 BRCA TCGA-BH-A0DK UBE4A SNP Missense_Mutation 11 118267106 T A 50 92 BRCA TCGA-BH-A0DK OR5B2 SNP Missense_Mutation 11 58190572 T G 59 55 BRCA TCGA-BH-A0DK BSCL2 SNP Missense_Mutation 11 62458135 C T 32 74 BRCA TCGA-BH-A0DK BSCL2 SNP Missense_Mutation 11 62458334 C T 29 53 BRCA TCGA-BH-A0DK MEN1 SNP Missense_Mutation 11 64575553 G A 41 90 BRCA TCGA-BH-A0DK MPHOSPH9 SNP Missense_Mutation 12 123687511 C G 32 75 BRCA TCGA-BH-A0DK ITGB7 SNP Silent 12 53587622 G T 39 59 BRCA TCGA-BH-A0DK CAND1 SNP Missense_Mutation 12 67699121 C T 31 77 BRCA TCGA-BH-A0DK SCFD1 SNP Missense_Mutation 14 31119774 C A 20 66 BRCA TCGA-BH-A0DK STRN3 SNP Silent 14 31381224 A C 9 73 BRCA TCGA-BH-A0DK TRPM7 SNP Missense_Mutation 15 50884259 T C 57 67 BRCA TCGA-BH-A0DK CYP11A1 SNP Missense_Mutation 15 74631030 C A 31 81 BRCA TCGA-BH-A0DK SRRM2 SNP Silent 16 2817327 G A 39 53 BRCA TCGA-BH-A0DK DOC2A SNP Missense_Mutation 16 30017763 T C 49 70 BRCA TCGA-BH-A0DK PRSS53 DEL Frame_Shift_Del 16 31098970 CT - 20 50 BRCA TCGA-BH-A0DK AARS SNP Missense_Mutation 16 70299461 C T 32 83 BRCA TCGA-BH-A0DK ANKRD11 INS Frame_Shift_Ins 16 89351746 - T 28 74 BRCA TCGA-BH-A0DK NGFR SNP Nonsense_Mutation 17 47589366 C T 21 80 BRCA TCGA-BH-A0DK KIF1C SNP Missense_Mutation 17 4906970 G A 43 98 BRCA TCGA-BH-A0DK DSC2 SNP Missense_Mutation 18 28659860 G A 44 49 BRCA TCGA-BH-A0DK ANKRD12 DEL Frame_Shift_Del 18 9255963 AG - 7 65 BRCA TCGA-BH-A0DK ABCA7 SNP Missense_Mutation 19 1043431 T A 56 81 BRCA TCGA-BH-A0DK SPRED3 SNP Missense_Mutation 19 38882594 G T 47 75 BRCA TCGA-BH-A0DK ATP1A3 SNP Missense_Mutation 19 42482107 C T 19 79 BRCA TCGA-BH-A0DK PRKD2 SNP Missense_Mutation 19 47181714 G C 44 66 BRCA TCGA-BH-A0DK MUC16 SNP Silent 19 9091401 T C 62 50 BRCA TCGA-BH-A0DK LONRF2 SNP Missense_Mutation 2 100903408 C A 21 99 BRCA TCGA-BH-A0DK EPB41L5 SNP Missense_Mutation 2 120918514 G T 46 41 BRCA TCGA-BH-A0DK COBLL1 SNP Missense_Mutation 2 165550903 C A 20 62 BRCA TCGA-BH-A0DK LRP2 SNP Missense_Mutation 2 170022539 G T 44 50 BRCA TCGA-BH-A0DK CYP20A1 SNP Silent 2 204154590 T C 62 54 BRCA TCGA-BH-A0DK NRP2 SNP Missense_Mutation 2 206617652 G A 39 50 BRCA TCGA-BH-A0DK SPHKAP SNP Missense_Mutation 2 228881884 C T 31 94 BRCA TCGA-BH-A0DK ATAD2B SNP Silent 2 24011446 T C 62 56 BRCA TCGA-BH-A0DK CTNNA2 SNP Silent 2 80540719 A G 15 50 BRCA TCGA-BH-A0DK CPXM1 SNP Silent 20 2774881 C T 23 35 BRCA TCGA-BH-A0DK RPRD1B SNP Silent 20 36676792 G A 45 69 BRCA TCGA-BH-A0DK CDH4 SNP Silent 20 60348142 C T 19 51 BRCA TCGA-BH-A0DK PWP2 SNP Missense_Mutation 21 45540528 A T 6 85 BRCA TCGA-BH-A0DK PES1 SNP Missense_Mutation 22 30975882 C T 27 98 BRCA TCGA-BH-A0DK ADSL SNP Missense_Mutation 22 40760339 G C 47 95 BRCA TCGA-BH-A0DK COL4A5 SNP Missense_Mutation 23 107924151 G T 42 92 BRCA TCGA-BH-A0DK DOCK11 SNP Missense_Mutation 23 117749569 G C 42 60 BRCA TCGA-BH-A0DK CBLB SNP Splice_site 3 105452983 T C 62 89 BRCA TCGA-BH-A0DK KIAA1524 SNP Nonsense_Mutation 3 108287044 T A 64 84 BRCA TCGA-BH-A0DK P2RY1 SNP Missense_Mutation 3 152554217 A T 8 54 BRCA TCGA-BH-A0DK PIK3CA SNP Missense_Mutation 3 178927980 T C 55 89 BRCA TCGA-BH-A0DK FHDC1 DEL Frame_Shift_Del 4 153893569 AA - 5 49 BRCA TCGA-BH-A0DK PI4K2B SNP Missense_Mutation 4 25258269 G C 36 57 BRCA TCGA-BH-A0DK ODAM SNP Missense_Mutation 4 71062264 A G 9 61 BRCA TCGA-BH-A0DK ANKHD1 SNP Missense_Mutation 5 139889608 G T 34 87 BRCA TCGA-BH-A0DK HEATR7B2 SNP Silent 5 41058279 C T 26 52 BRCA TCGA-BH-A0DK CEP72 SNP Missense_Mutation 5 620293 A G 10 82 BRCA TCGA-BH-A0DK AP3B1 SNP Missense_Mutation 5 77423976 G A 45 88 BRCA TCGA-BH-A0DK ZFYVE16 SNP Missense_Mutation 5 79734566 A C 6 57 BRCA TCGA-BH-A0DK LIX1 SNP Silent 5 96430596 G T 47 65 BRCA TCGA-BH-A0DK ZBTB24 SNP Missense_Mutation 6 109787472 G T 33 72 BRCA TCGA-BH-A0DK HBS1L SNP Missense_Mutation 6 135287593 C G 32 87 BRCA TCGA-BH-A0DK GINM1 SNP Missense_Mutation 6 149893676 G A 44 58 BRCA TCGA-BH-A0DK C6orf136 SNP Nonsense_Mutation 6 30617375 G A 47 58 BRCA TCGA-BH-A0DK METTL2B SNP Missense_Mutation 7 128119302 C G 18 73 BRCA TCGA-BH-A0DK PKD1L1 SNP Missense_Mutation 7 47847972 C T 30 66 BRCA TCGA-BH-A0DK DDC SNP Silent 7 50611610 G A 40 39 BRCA TCGA-BH-A0DK PTPN12 SNP Missense_Mutation 7 77256423 C G 32 51 BRCA TCGA-BH-A0DK PHTF2 INS Splice_Site 7 77469618 - T 44 81 BRCA TCGA-BH-A0DK TATDN1 SNP Silent 8 125528004 G T 47 50 BRCA TCGA-BH-A0DK ARFGEF1 SNP Silent 8 68204307 G A 33 62 BRCA TCGA-BH-A0DK ARFGEF1 SNP Missense_Mutation 8 68204310 G A 45 61 BRCA TCGA-BH-A0DK POP1 SNP Missense_Mutation 8 99135672 G C 36 50 BRCA TCGA-BH-A0DK CNTRL SNP Missense_Mutation 9 123888093 C A 26 76 BRCA TCGA-BH-A0DK GPR107 SNP Missense_Mutation 9 132863474 A T 3 91 BRCA TCGA-BH-A0DK ADAMTS13 SNP Missense_Mutation 9 136323154 A G 8 62 BRCA TCGA-BH-A0DK SEC16A SNP Missense_Mutation 9 139357554 G T 33 49 BRCA TCGA-BH-A0DK CA9 SNP Missense_Mutation 9 35676160 C T 23 61 BRCA TCGA-BH-A0DL HRNR SNP Missense_Mutation 1 152185679 C A 22 43 BRCA TCGA-BH-A0DL SEC16B SNP Missense_Mutation 1 177911130 C T 19 51 BRCA TCGA-BH-A0DL VWA5B1 SNP Missense_Mutation 1 20656786 C G 18 65 BRCA TCGA-BH-A0DL GHITM SNP Missense_Mutation 10 85902493 T C 51 57 BRCA TCGA-BH-A0DL MUC5B SNP Silent 11 1155537 G A 38 34 BRCA TCGA-BH-A0DL OR4C15 SNP Silent 11 55322145 C T 30 45 BRCA TCGA-BH-A0DL ANAPC5 SNP Missense_Mutation 12 121775176 T A 50 90 BRCA TCGA-BH-A0DL POLE SNP Missense_Mutation 12 133253205 G T 44 100 BRCA TCGA-BH-A0DL PCDH17 SNP Silent 13 58208939 T A 59 53 BRCA TCGA-BH-A0DL SLITRK6 SNP Missense_Mutation 13 86369908 C A 17 78 BRCA TCGA-BH-A0DL SPTLC2 SNP Missense_Mutation 14 78043232 A C 2 92 BRCA TCGA-BH-A0DL PDXDC1 SNP Missense_Mutation 16 15100357 T C 56 87 BRCA TCGA-BH-A0DL NUDT7 SNP Missense_Mutation 16 77759477 A G 11 73 BRCA TCGA-BH-A0DL TP53 SNP Missense_Mutation 17 7577081 T G 62 75 BRCA TCGA-BH-A0DL MYL12A SNP Missense_Mutation 18 3253901 G A 45 100 BRCA TCGA-BH-A0DL MYL12A SNP Missense_Mutation 18 3254033 G C 45 100 BRCA TCGA-BH-A0DL CD97 SNP Missense_Mutation 19 14517708 G A 40 69 BRCA TCGA-BH-A0DL ZNF320 SNP Silent 19 53384563 A G 3 40 BRCA TCGA-BH-A0DL TTN SNP Missense_Mutation 2 179463325 G T 33 51 BRCA TCGA-BH-A0DL LOC100131482 SNP Silent 2 180679175 A T 14 54 BRCA TCGA-BH-A0DL LTBP1 SNP Missense_Mutation 2 33500981 C G 23 54 BRCA TCGA-BH-A0DL ZNFX1 SNP Missense_Mutation 20 47855789 G A 39 53 BRCA TCGA-BH-A0DL LAMA5 SNP Missense_Mutation 20 60912928 C T 27 51 BRCA TCGA-BH-A0DL CLDN5 SNP Missense_Mutation 22 19511619 A G 6 75 BRCA TCGA-BH-A0DL L3MBTL2 SNP Missense_Mutation 22 41605850 C T 31 58 BRCA TCGA-BH-A0DL SLC25A53 SNP Missense_Mutation 23 103349780 C T 23 85 BRCA TCGA-BH-A0DL ARHGAP6 SNP Silent 23 11162155 G A 42 53 BRCA TCGA-BH-A0DL NDUFA1 SNP Silent 23 119005892 C T 30 42 BRCA TCGA-BH-A0DL PTCHD1 SNP Missense_Mutation 23 23353126 G A 38 94 BRCA TCGA-BH-A0DL KDM6A DEL Splice_site 23 44894229 AAGT - 1 69 BRCA TCGA-BH-A0DL ARHGEF9 SNP Missense_Mutation 23 62917109 C T 29 93 BRCA TCGA-BH-A0DL ABCB7 SNP Missense_Mutation 23 74296386 G A 46 71 BRCA TCGA-BH-A0DL PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A0DL CCR1 SNP Missense_Mutation 3 46244889 C T 29 72 BRCA TCGA-BH-A0DL GNAI2 SNP Missense_Mutation 3 50273876 C A 28 82 BRCA TCGA-BH-A0DL ANKRD50 SNP Missense_Mutation 4 125593120 T C 49 89 BRCA TCGA-BH-A0DL CHD1 SNP Missense_Mutation 5 98235337 T C 64 70 BRCA TCGA-BH-A0DL KCNQ5 SNP Missense_Mutation 6 73787062 G A 38 100 BRCA TCGA-BH-A0DL COL12A1 SNP Missense_Mutation 6 75834939 A C 3 56 BRCA TCGA-BH-A0DL LAMB4 SNP Missense_Mutation 7 107688451 C T 23 69 BRCA TCGA-BH-A0DL SNTB1 SNP Missense_Mutation 8 121823729 C G 30 94 BRCA TCGA-BH-A0DL ADCY8 SNP Missense_Mutation 8 131826458 G A 39 61 BRCA TCGA-BH-A0DL CARD9 SNP Missense_Mutation 9 139266463 G A 37 60 BRCA TCGA-BH-A0DL CDC37L1 SNP Missense_Mutation 9 4697194 C T 29 82 BRCA TCGA-BH-A0DO TCHH SNP Silent 1 152079924 G A 41 48 BRCA TCGA-BH-A0DO OR6A2 SNP Missense_Mutation 11 6816047 C T 27 57 BRCA TCGA-BH-A0DO SLITRK1 SNP Missense_Mutation 13 84454919 C T 31 82 BRCA TCGA-BH-A0DO MAPK8IP3 SNP Missense_Mutation 16 1793389 G C 40 98 BRCA TCGA-BH-A0DO ZNF568 SNP Missense_Mutation 19 37441513 G A 48 54 BRCA TCGA-BH-A0DO WDR87 SNP Silent 19 38380122 G A 34 51 BRCA TCGA-BH-A0DO SFRS16 SNP Missense_Mutation 19 45567648 C G 30 66 BRCA TCGA-BH-A0DO SIGLEC6 SNP Silent 19 52033695 G A 38 47 BRCA TCGA-BH-A0DO STAM2 SNP Missense_Mutation 2 152988657 C T 29 60 BRCA TCGA-BH-A0DO PASK SNP Missense_Mutation 2 242051776 C T 31 68 BRCA TCGA-BH-A0DO MX1 SNP Missense_Mutation 21 42823096 A G 16 51 BRCA TCGA-BH-A0DO PTCHD1 SNP Silent 23 23411483 C T 24 67 BRCA TCGA-BH-A0DO PIK3CA SNP Missense_Mutation 3 178952074 G A 45 100 BRCA TCGA-BH-A0DO CACNA1D SNP Silent 3 53779689 C T 31 48 BRCA TCGA-BH-A0DO HIVEP2 DEL Frame_Shift_Del 6 143074830 G - 48 63 BRCA TCGA-BH-A0DO EGR3 DEL Frame_Shift_Del 8 22548686 GAGTAGAG - 45 70 BRCA TCGA-BH-A0DO CSMD1 SNP Missense_Mutation 8 4494943 G A 47 64 BRCA TCGA-BH-A0DO SETX SNP Missense_Mutation 9 135153491 T G 61 61 BRCA TCGA-BH-A0DP FLG SNP Missense_Mutation 1 152282524 G A 37 54 BRCA TCGA-BH-A0DP NUP160 SNP Missense_Mutation 11 47814420 T C 60 68 BRCA TCGA-BH-A0DP SLCO1B7 SNP Missense_Mutation 12 21168658 G A 35 85 BRCA TCGA-BH-A0DP GPR182 SNP Silent 12 57389644 G A 39 48 BRCA TCGA-BH-A0DP DCLK1 SNP Silent 13 36700119 G A 39 44 BRCA TCGA-BH-A0DP FAN1 DEL Frame_Shift_Del 15 31197787 TG - 55 52 BRCA TCGA-BH-A0DP NOB1 DEL Frame_Shift_Del 16 69776213 TTTGCCTGCGGGAACTCGCTCTTCACCT - 52 39 BRCA TCGA-BH-A0DP MAP2K4 SNP Missense_Mutation 17 12011144 C T 31 98 BRCA TCGA-BH-A0DP GRN SNP Missense_Mutation 17 42427851 T G 59 40 BRCA TCGA-BH-A0DP CCDC11 SNP Missense_Mutation 18 47777321 T C 51 52 BRCA TCGA-BH-A0DP NINL SNP Missense_Mutation 20 25459629 G C 35 49 BRCA TCGA-BH-A0DP SGSM1 SNP Missense_Mutation 22 25308612 G T 42 99 BRCA TCGA-BH-A0DP ITGB5 SNP Missense_Mutation 3 124540269 T C 50 79 BRCA TCGA-BH-A0DP PIK3R4 SNP Missense_Mutation 3 130452677 G C 35 86 BRCA TCGA-BH-A0DP PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-BH-A0DP RPSA SNP Missense_Mutation 3 39452384 A C 6 84 BRCA TCGA-BH-A0DP PCDHB12 SNP Silent 5 140590267 G A 39 47 BRCA TCGA-BH-A0DP EXOC3 SNP Missense_Mutation 5 453697 A G 12 62 BRCA TCGA-BH-A0DP RNGTT SNP Missense_Mutation 6 89600290 C T 17 84 BRCA TCGA-BH-A0DP EBF2 SNP Missense_Mutation 8 25897605 C T 31 97 BRCA TCGA-BH-A0DQ SMYD2 SNP Silent 1 214504346 C T 21 53 BRCA TCGA-BH-A0DQ COL16A1 SNP Silent 1 32127285 G A 42 46 BRCA TCGA-BH-A0DQ ACSL5 SNP Splice_Site 10 114168281 T C 57 91 BRCA TCGA-BH-A0DQ KIAA0913 DEL Frame_Shift_Del 10 75560085 A - 7 50 BRCA TCGA-BH-A0DQ TECTA INS Frame_Shift_Ins 11 121030932 - C 34 79 BRCA TCGA-BH-A0DQ SBF2 SNP Silent 11 9853808 G A 37 46 BRCA TCGA-BH-A0DQ SLC24A6 SNP Missense_Mutation 12 113737727 C T 28 75 BRCA TCGA-BH-A0DQ GTF2H3 SNP Splice_site 12 124144342 T A 59 89 BRCA TCGA-BH-A0DQ MIS18BP1 SNP Missense_Mutation 14 45687625 C A 18 80 BRCA TCGA-BH-A0DQ GDPGP1 SNP Missense_Mutation 15 90784678 C T 27 55 BRCA TCGA-BH-A0DQ WWP2 SNP Missense_Mutation 16 69965057 C T 19 56 BRCA TCGA-BH-A0DQ C1QL1 SNP Silent 17 43045000 G A 43 48 BRCA TCGA-BH-A0DQ MINK1 SNP Missense_Mutation 17 4796018 G A 39 60 BRCA TCGA-BH-A0DQ LAMA1 SNP Missense_Mutation 18 7040119 C T 22 100 BRCA TCGA-BH-A0DQ KCNC3 SNP Nonsense_Mutation 19 50831788 G T 34 64 BRCA TCGA-BH-A0DQ ZNF460 SNP Missense_Mutation 19 57802202 G A 43 47 BRCA TCGA-BH-A0DQ MAP2K7 INS Frame_Shift_Ins 19 7974955 - TT 12 84 BRCA TCGA-BH-A0DQ PGAP1 SNP Splice_site 2 197709249 A G 6 56 BRCA TCGA-BH-A0DQ SF3B1 SNP Missense_Mutation 2 198266834 T C 62 93 BRCA TCGA-BH-A0DQ NRP2 SNP Missense_Mutation 2 206610543 G A 39 100 BRCA TCGA-BH-A0DQ COLEC11 SNP Missense_Mutation 2 3691410 G A 38 84 BRCA TCGA-BH-A0DQ TSGA10 SNP Nonsense_Mutation 2 99634761 A T 12 54 BRCA TCGA-BH-A0DQ ACTRT1 SNP Missense_Mutation 23 127186074 C T 19 59 BRCA TCGA-BH-A0DQ FAM127C SNP Silent 23 134156265 G A 39 29 BRCA TCGA-BH-A0DQ WNK3 SNP Missense_Mutation 23 54335680 C T 22 95 BRCA TCGA-BH-A0DQ VSIG4 SNP Silent 23 65244946 G A 45 49 BRCA TCGA-BH-A0DQ MFI2 SNP Missense_Mutation 3 196751207 G A 39 65 BRCA TCGA-BH-A0DQ INPP4B SNP Missense_Mutation 4 143067052 C T 26 67 BRCA TCGA-BH-A0DQ RNF44 SNP Missense_Mutation 5 175957174 T G 59 61 BRCA TCGA-BH-A0DQ AP3B1 SNP Missense_Mutation 5 77385315 C A 20 59 BRCA TCGA-BH-A0DQ PERP SNP Missense_Mutation 6 138413301 C T 23 96 BRCA TCGA-BH-A0DQ CDYL SNP Missense_Mutation 6 4892446 A G 10 91 BRCA TCGA-BH-A0DQ NOD1 SNP Missense_Mutation 7 30491714 C T 28 73 BRCA TCGA-BH-A0DQ CSMD3 SNP Missense_Mutation 8 113564901 G C 33 99 BRCA TCGA-BH-A0DS IER5 SNP Silent 1 181058081 C T 32 69 BRCA TCGA-BH-A0DS PIK3C2B SNP Silent 1 204394861 G A 41 52 BRCA TCGA-BH-A0DS MIA3 SNP Silent 1 222803199 C T 18 49 BRCA TCGA-BH-A0DS GGPS1 SNP Silent 1 235505826 A G 8 49 BRCA TCGA-BH-A0DS HPDL SNP Silent 1 45792976 G C 39 7 BRCA TCGA-BH-A0DS ZNF644 SNP Nonsense_Mutation 1 91405737 C A 29 90 BRCA TCGA-BH-A0DS DCLRE1C SNP Missense_Mutation 10 14961809 A G 9 61 BRCA TCGA-BH-A0DS PITRM1 SNP Silent 10 3208485 C T 19 9 BRCA TCGA-BH-A0DS GATA3 INS Frame_Shift_Ins 10 8115733 - CATCCAGACC 42 100 BRCA TCGA-BH-A0DS LRIT1 SNP Silent 10 85991725 A G 5 52 BRCA TCGA-BH-A0DS SH2B3 SNP Missense_Mutation 12 111885304 C T 27 58 BRCA TCGA-BH-A0DS NCKAP1L SNP Missense_Mutation 12 54925050 G A 39 69 BRCA TCGA-BH-A0DS TTLL5 SNP Missense_Mutation 14 76232419 G A 34 65 BRCA TCGA-BH-A0DS UNC79 SNP Silent 14 94088208 C T 19 41 BRCA TCGA-BH-A0DS BRCA1 SNP Missense_Mutation 17 41199695 T A 55 71 BRCA TCGA-BH-A0DS LUC7L3 SNP Missense_Mutation 17 48822101 G A 39 100 BRCA TCGA-BH-A0DS SMCHD1 SNP Missense_Mutation 18 2722567 G T 48 76 BRCA TCGA-BH-A0DS ZNF44 SNP Splice_site 19 12385848 C G 30 58 BRCA TCGA-BH-A0DS MYH14 SNP Missense_Mutation 19 50753926 T C 60 84 BRCA TCGA-BH-A0DS IL36RN SNP Missense_Mutation 2 113819727 C T 31 64 BRCA TCGA-BH-A0DS TRPM8 SNP Nonsense_Mutation 2 234878392 G A 41 87 BRCA TCGA-BH-A0DS RPL23AP32 SNP Missense_Mutation 2 54756755 A C 3 59 BRCA TCGA-BH-A0DS SIRPA SNP Missense_Mutation 20 1902268 G A 40 63 BRCA TCGA-BH-A0DS XKR7 SNP Missense_Mutation 20 30584668 G A 38 84 BRCA TCGA-BH-A0DS HNF4A SNP Silent 20 43031282 G A 41 52 BRCA TCGA-BH-A0DS AKAP14 SNP Silent 23 119037537 C T 19 27 BRCA TCGA-BH-A0DS FAM123B SNP Missense_Mutation 23 63411758 C T 18 79 BRCA TCGA-BH-A0DS IQCF1 SNP Missense_Mutation 3 51929268 G A 37 53 BRCA TCGA-BH-A0DS DNAH1 SNP Missense_Mutation 3 52417430 T A 50 89 BRCA TCGA-BH-A0DS CORIN SNP Missense_Mutation 4 47839941 G A 39 49 BRCA TCGA-BH-A0DS PCDHB11 SNP Missense_Mutation 5 140581301 C T 27 67 BRCA TCGA-BH-A0DS GRK6 SNP Silent 5 176859087 C T 27 61 BRCA TCGA-BH-A0DS RAB3C SNP Silent 5 58120940 C T 19 45 BRCA TCGA-BH-A0DS ESR1 SNP Missense_Mutation 6 152201810 C T 30 100 BRCA TCGA-BH-A0DS HIST1H2BB SNP Missense_Mutation 6 26043672 C T 31 98 BRCA TCGA-BH-A0DS VWA7 SNP Silent 6 31734300 C T 23 48 BRCA TCGA-BH-A0DS CREB5 SNP Silent 7 28848830 G A 34 80 BRCA TCGA-BH-A0DS RIMS2 SNP Missense_Mutation 8 104933950 A G 14 93 BRCA TCGA-BH-A0DS PPP2CB SNP Missense_Mutation 8 30651456 G A 37 74 BRCA TCGA-BH-A0DS STAU2 DEL Frame_Shift_Del 8 74585370 A - 13 91 BRCA TCGA-BH-A0DS KIF27 SNP Missense_Mutation 9 86465140 G A 40 69 BRCA TCGA-BH-A0DS PTCH1 SNP Missense_Mutation 9 98218641 C T 23 96 BRCA TCGA-BH-A0DT LOC100287102 INS Frame_Shift_Ins 1 13417 - GAGA 23 57 BRCA TCGA-BH-A0DT GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-BH-A0DT CACNA1C SNP Silent 12 2800326 G A 35 63 BRCA TCGA-BH-A0DT RPAP3 SNP Missense_Mutation 12 48091472 C A 31 62 BRCA TCGA-BH-A0DT CBFB SNP Missense_Mutation 16 67063313 G A 46 81 BRCA TCGA-BH-A0DT NOL10 SNP Missense_Mutation 2 10729809 A T 8 50 BRCA TCGA-BH-A0DT MTA3 SNP Missense_Mutation 2 42909567 A C 10 48 BRCA TCGA-BH-A0DT DNAH6 SNP Missense_Mutation 2 84784910 C T 30 57 BRCA TCGA-BH-A0DT PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-BH-A0DT BMPR1B DEL Frame_Shift_Del 4 96045009 CTGT - 20 75 BRCA TCGA-BH-A0DT NUP155 SNP Missense_Mutation 5 37314414 T G 64 57 BRCA TCGA-BH-A0DT MAP3K1 DEL Frame_Shift_Del 5 56160697 CTAA - 24 90 BRCA TCGA-BH-A0DT MAP3K1 INS Frame_Shift_Ins 5 56161690 - T 40 94 BRCA TCGA-BH-A0DT RNF180 SNP Missense_Mutation 5 63510190 C T 29 54 BRCA TCGA-BH-A0DT EGFR SNP Silent 7 55266456 C T 19 36 BRCA TCGA-BH-A0DV NUAK2 SNP Missense_Mutation 1 205274440 C A 18 88 BRCA TCGA-BH-A0DV RSAD1 SNP Silent 17 48557115 G A 43 54 BRCA TCGA-BH-A0DV SHANK1 SNP Missense_Mutation 19 51165616 C A 26 68 BRCA TCGA-BH-A0DV PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-BH-A0DV MLL3 DEL Splice_Site 7 151859200 A - 14 83 BRCA TCGA-BH-A0DX SCAMP3 SNP Missense_Mutation 1 155228722 G C 33 61 BRCA TCGA-BH-A0DX KIRREL SNP Missense_Mutation 1 158058164 G A 47 82 BRCA TCGA-BH-A0DX CROCC SNP Missense_Mutation 1 17273343 G C 33 74 BRCA TCGA-BH-A0DX NUCKS1 SNP Missense_Mutation 1 205689755 G A 45 78 BRCA TCGA-BH-A0DX CSF3R SNP Missense_Mutation 1 36933504 G C 33 43 BRCA TCGA-BH-A0DX WDR63 SNP Missense_Mutation 1 85560164 C A 29 55 BRCA TCGA-BH-A0DX GUCY1A2 SNP Missense_Mutation 11 106680934 G A 33 99 BRCA TCGA-BH-A0DX BCL9L SNP Silent 11 118772067 C T 29 61 BRCA TCGA-BH-A0DX CCDC15 SNP Missense_Mutation 11 124856675 C T 29 52 BRCA TCGA-BH-A0DX ANO5 SNP Missense_Mutation 11 22272388 C T 29 97 BRCA TCGA-BH-A0DX EXT2 SNP Missense_Mutation 11 44228348 C T 32 71 BRCA TCGA-BH-A0DX OR5M1 SNP Silent 11 56380151 G T 33 47 BRCA TCGA-BH-A0DX CCDC87 DEL In_Frame_Del 11 66358631 TCT - 54 71 BRCA TCGA-BH-A0DX MTUS2 SNP Silent 13 29933532 C T 27 52 BRCA TCGA-BH-A0DX NEK5 SNP Missense_Mutation 13 52667302 C A 29 64 BRCA TCGA-BH-A0DX DIS3 SNP Missense_Mutation 13 73348184 A G 14 63 BRCA TCGA-BH-A0DX PACS2 SNP Missense_Mutation 14 105843115 C T 31 73 BRCA TCGA-BH-A0DX TTC5 SNP Missense_Mutation 14 20757805 G A 37 72 BRCA TCGA-BH-A0DX ACIN1 SNP Silent 14 23559213 C T 21 61 BRCA TCGA-BH-A0DX MYH6 SNP Missense_Mutation 14 23858207 G A 38 56 BRCA TCGA-BH-A0DX MBIP SNP Silent 14 36781172 G A 40 51 BRCA TCGA-BH-A0DX LRR1 SNP Nonsense_Mutation 14 50065856 C T 29 54 BRCA TCGA-BH-A0DX LOC100133063 SNP Missense_Mutation 15 21286656 C T 30 62 BRCA TCGA-BH-A0DX RYR3 SNP Missense_Mutation 15 34032055 G C 37 72 BRCA TCGA-BH-A0DX UBN1 SNP Silent 16 4923065 C T 29 60 BRCA TCGA-BH-A0DX ADCY7 SNP Missense_Mutation 16 50345963 G A 38 98 BRCA TCGA-BH-A0DX NLRC5 SNP Missense_Mutation 16 57060870 G A 48 90 BRCA TCGA-BH-A0DX ENSG00000154898 SNP Nonsense_Mutation 17 20242871 C T 25 43 BRCA TCGA-BH-A0DX MED24 DEL Splice_Site 17 38179081 TAGTGCGCAGGAA - 53 77 BRCA TCGA-BH-A0DX TRAPPC8 SNP Nonsense_Mutation 18 29470718 G A 37 78 BRCA TCGA-BH-A0DX IL28B SNP Missense_Mutation 19 39734315 G A 40 41 BRCA TCGA-BH-A0DX CLASRP SNP Missense_Mutation 19 45574072 C T 30 63 BRCA TCGA-BH-A0DX NLRP2 SNP Missense_Mutation 19 55505775 G C 45 55 BRCA TCGA-BH-A0DX PPP6R1 SNP Silent 19 55743172 G A 45 60 BRCA TCGA-BH-A0DX DUS3L SNP Missense_Mutation 19 5787632 C A 19 70 BRCA TCGA-BH-A0DX IL18R1 SNP Missense_Mutation 2 102988423 C G 29 43 BRCA TCGA-BH-A0DX DPP4 SNP Missense_Mutation 2 162890159 C G 30 90 BRCA TCGA-BH-A0DX TTN SNP Missense_Mutation 2 179471955 C T 21 100 BRCA TCGA-BH-A0DX TTN SNP Missense_Mutation 2 179615735 C G 29 61 BRCA TCGA-BH-A0DX CYP20A1 SNP Missense_Mutation 2 204116801 C T 32 69 BRCA TCGA-BH-A0DX EPAS1 SNP Missense_Mutation 2 46574149 C T 30 85 BRCA TCGA-BH-A0DX NRXN1 SNP Missense_Mutation 2 51254720 C T 30 100 BRCA TCGA-BH-A0DX PDYN SNP Missense_Mutation 20 1961312 G T 46 45 BRCA TCGA-BH-A0DX ITGB2 SNP Nonsense_Mutation 21 46319038 C A 29 95 BRCA TCGA-BH-A0DX AFF2 SNP Missense_Mutation 23 148037760 C A 25 92 BRCA TCGA-BH-A0DX SPIN2B SNP Missense_Mutation 23 57146372 G C 47 81 BRCA TCGA-BH-A0DX RUVBL1 SNP Missense_Mutation 3 127816231 C T 29 100 BRCA TCGA-BH-A0DX TOPBP1 SNP Missense_Mutation 3 133335748 G A 45 53 BRCA TCGA-BH-A0DX PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-BH-A0DX MAP3K13 SNP Missense_Mutation 3 185198193 C T 19 85 BRCA TCGA-BH-A0DX SCN11A SNP Missense_Mutation 3 38962717 G A 40 93 BRCA TCGA-BH-A0DX ZNF621 SNP Missense_Mutation 3 40573701 G A 41 89 BRCA TCGA-BH-A0DX ZNF445 SNP Missense_Mutation 3 44489889 G A 45 67 BRCA TCGA-BH-A0DX KIF15 SNP Missense_Mutation 3 44893829 G A 45 74 BRCA TCGA-BH-A0DX DNAH1 SNP Silent 3 52396484 C T 19 42 BRCA TCGA-BH-A0DX TBC1D9 SNP Nonsense_Mutation 4 141598222 G T 44 72 BRCA TCGA-BH-A0DX FAT1 SNP Missense_Mutation 4 187519128 C G 32 56 BRCA TCGA-BH-A0DX PCDHA10 SNP Missense_Mutation 5 140236913 G A 39 51 BRCA TCGA-BH-A0DX PARK2 SNP Missense_Mutation 6 161969999 C A 17 76 BRCA TCGA-BH-A0DX THBS2 SNP Missense_Mutation 6 169626349 C T 29 98 BRCA TCGA-BH-A0DX ADRA1A SNP Missense_Mutation 8 26623598 C A 25 51 BRCA TCGA-BH-A0DX GRIN3A SNP Missense_Mutation 9 104499768 G A 43 93 BRCA TCGA-BH-A0DX PRRC2B SNP Missense_Mutation 9 134351790 G A 33 97 BRCA TCGA-BH-A0DX DDX31 SNP Missense_Mutation 9 135537878 T G 51 29 BRCA TCGA-BH-A0DX NXNL2 SNP Silent 9 91159324 C G 21 56 BRCA TCGA-BH-A0DZ MTOR SNP Missense_Mutation 1 11317097 G C 33 96 BRCA TCGA-BH-A0DZ FAM46C SNP Silent 1 118166486 C T 29 85 BRCA TCGA-BH-A0DZ NOTCH2 SNP Silent 1 120484367 C T 32 61 BRCA TCGA-BH-A0DZ FLG SNP Missense_Mutation 1 152279083 C G 32 44 BRCA TCGA-BH-A0DZ MEX3A SNP Missense_Mutation 1 156046487 G A 35 70 BRCA TCGA-BH-A0DZ FCRL3 SNP Missense_Mutation 1 157659599 C T 31 49 BRCA TCGA-BH-A0DZ ATP1A4 SNP Missense_Mutation 1 160136489 G C 45 61 BRCA TCGA-BH-A0DZ ARHGAP30 SNP Silent 1 161026205 G C 45 73 BRCA TCGA-BH-A0DZ OLFML2B SNP Silent 1 161970068 G A 33 64 BRCA TCGA-BH-A0DZ SPEN SNP Silent 1 16260889 G A 45 63 BRCA TCGA-BH-A0DZ GORAB SNP Silent 1 170501403 G C 45 63 BRCA TCGA-BH-A0DZ FMO2 SNP Missense_Mutation 1 171154948 G C 33 57 BRCA TCGA-BH-A0DZ SUCO SNP Missense_Mutation 1 172558405 G C 45 82 BRCA TCGA-BH-A0DZ CROCC SNP Missense_Mutation 1 17292567 C A 18 43 BRCA TCGA-BH-A0DZ CEP350 SNP Missense_Mutation 1 180034352 G A 45 97 BRCA TCGA-BH-A0DZ DENND1B SNP Missense_Mutation 1 197479960 G C 33 71 BRCA TCGA-BH-A0DZ KIF14 SNP Missense_Mutation 1 200586951 G C 41 33 BRCA TCGA-BH-A0DZ PKP1 SNP Missense_Mutation 1 201292174 G C 33 95 BRCA TCGA-BH-A0DZ NAV1 SNP Missense_Mutation 1 201751591 G A 48 100 BRCA TCGA-BH-A0DZ USH2A SNP Missense_Mutation 1 216373262 G A 45 61 BRCA TCGA-BH-A0DZ CAPN2 SNP Silent 1 223940585 G A 33 61 BRCA TCGA-BH-A0DZ COX20 SNP Missense_Mutation 1 245006446 G C 45 57 BRCA TCGA-BH-A0DZ OR14I1 SNP Silent 1 248845114 C T 28 51 BRCA TCGA-BH-A0DZ CEP85 SNP Missense_Mutation 1 26603638 G C 33 71 BRCA TCGA-BH-A0DZ LCK SNP Missense_Mutation 1 32740653 G C 45 64 BRCA TCGA-BH-A0DZ INPP5B SNP Missense_Mutation 1 38345821 C G 32 100 BRCA TCGA-BH-A0DZ NFYC SNP Missense_Mutation 1 41213269 G A 33 95 BRCA TCGA-BH-A0DZ LRRC41 SNP Missense_Mutation 1 46763977 C T 29 82 BRCA TCGA-BH-A0DZ CYP4X1 SNP Missense_Mutation 1 47501739 T G 64 47 BRCA TCGA-BH-A0DZ HOOK1 SNP Missense_Mutation 1 60336717 G A 45 77 BRCA TCGA-BH-A0DZ SFXN2 SNP Silent 10 104486423 C T 31 50 BRCA TCGA-BH-A0DZ FAM160B1 SNP Missense_Mutation 10 116593004 C T 21 100 BRCA TCGA-BH-A0DZ CCDC172 SNP Missense_Mutation 10 118138002 G A 33 80 BRCA TCGA-BH-A0DZ ZNF248 SNP Missense_Mutation 10 38121754 C G 29 54 BRCA TCGA-BH-A0DZ ZNF248 SNP Missense_Mutation 10 38121798 C T 32 66 BRCA TCGA-BH-A0DZ ASAH2 SNP Silent 10 52003088 C T 32 82 BRCA TCGA-BH-A0DZ NUDT13 SNP Missense_Mutation 10 74874153 G C 41 52 BRCA TCGA-BH-A0DZ FUT11 SNP Silent 10 75532727 C G 32 51 BRCA TCGA-BH-A0DZ IFIT2 SNP Missense_Mutation 10 91066299 G A 45 50 BRCA TCGA-BH-A0DZ KIF11 SNP Missense_Mutation 10 94366119 G A 45 100 BRCA TCGA-BH-A0DZ AVPI1 SNP Missense_Mutation 10 99439583 G A 37 66 BRCA TCGA-BH-A0DZ CNTN5 SNP Missense_Mutation 11 100064234 G C 33 89 BRCA TCGA-BH-A0DZ ARHGAP20 SNP Missense_Mutation 11 110450435 C T 21 51 BRCA TCGA-BH-A0DZ OR8D1 SNP Silent 11 124180243 G C 33 46 BRCA TCGA-BH-A0DZ SRPR SNP Nonsense_Mutation 11 126136689 G A 45 75 BRCA TCGA-BH-A0DZ SRPR SNP Missense_Mutation 11 126137590 G C 41 57 BRCA TCGA-BH-A0DZ SRPR SNP Missense_Mutation 11 126137924 C T 30 96 BRCA TCGA-BH-A0DZ AGBL2 SNP Missense_Mutation 11 47731963 C G 29 53 BRCA TCGA-BH-A0DZ OR56A1 SNP Missense_Mutation 11 6048366 G C 33 58 BRCA TCGA-BH-A0DZ FADS2 SNP Missense_Mutation 11 61583860 C T 29 55 BRCA TCGA-BH-A0DZ CABP2 SNP Silent 11 67287358 G A 45 71 BRCA TCGA-BH-A0DZ ALDH3B2 SNP Missense_Mutation 11 67431978 G C 33 72 BRCA TCGA-BH-A0DZ IL18BP SNP Splice_site 11 71712941 G T 45 55 BRCA TCGA-BH-A0DZ NR1H4 SNP Silent 12 100928777 G C 45 68 BRCA TCGA-BH-A0DZ NFYB SNP Silent 12 104517031 C A 29 59 BRCA TCGA-BH-A0DZ C12orf51 SNP Missense_Mutation 12 112669495 C T 32 99 BRCA TCGA-BH-A0DZ DTX1 SNP Silent 12 113515419 C T 29 67 BRCA TCGA-BH-A0DZ HPD SNP Silent 12 122294305 G A 38 25 BRCA TCGA-BH-A0DZ HCAR1 SNP Silent 12 123214247 G T 37 61 BRCA TCGA-BH-A0DZ C12orf36 SNP Missense_Mutation 12 13529169 C G 32 52 BRCA TCGA-BH-A0DZ ADIPOR2 SNP Translation_Start_Site 12 1863507 C G 30 76 BRCA TCGA-BH-A0DZ PFKM SNP Nonsense_Mutation 12 48539433 C A 29 99 BRCA TCGA-BH-A0DZ C12orf66 SNP Silent 12 64609478 G A 45 59 BRCA TCGA-BH-A0DZ CLSTN3 SNP Missense_Mutation 12 7294698 G C 33 61 BRCA TCGA-BH-A0DZ NAV3 SNP Nonsense_Mutation 12 78598796 C T 29 70 BRCA TCGA-BH-A0DZ NALCN SNP Missense_Mutation 13 101910796 C T 30 97 BRCA TCGA-BH-A0DZ PDS5B SNP Missense_Mutation 13 33252979 G A 45 100 BRCA TCGA-BH-A0DZ ELF1 SNP Missense_Mutation 13 41515065 C G 32 54 BRCA TCGA-BH-A0DZ ELF1 SNP Nonsense_Mutation 13 41515219 G C 45 86 BRCA TCGA-BH-A0DZ UGGT2 SNP Missense_Mutation 13 96589256 C T 29 54 BRCA TCGA-BH-A0DZ OXGR1 SNP Nonsense_Mutation 13 97639086 G A 45 71 BRCA TCGA-BH-A0DZ TPPP2 SNP Silent 14 21499252 G A 33 55 BRCA TCGA-BH-A0DZ PSMB11 SNP Silent 14 23512055 C T 27 36 BRCA TCGA-BH-A0DZ RNF31 SNP Silent 14 24617199 C T 29 64 BRCA TCGA-BH-A0DZ RNF31 SNP Silent 14 24617253 C T 29 49 BRCA TCGA-BH-A0DZ RNF31 SNP Nonsense_Mutation 14 24617260 C T 29 66 BRCA TCGA-BH-A0DZ RABGGTA SNP Silent 14 24740088 C T 32 58 BRCA TCGA-BH-A0DZ SOS2 SNP Missense_Mutation 14 50623790 C G 32 78 BRCA TCGA-BH-A0DZ ZFYVE26 SNP Missense_Mutation 14 68229412 C T 31 100 BRCA TCGA-BH-A0DZ SIPA1L1 SNP Missense_Mutation 14 72176230 G C 33 87 BRCA TCGA-BH-A0DZ MLH3 SNP Missense_Mutation 14 75515335 C T 30 88 BRCA TCGA-BH-A0DZ SPTLC2 SNP Missense_Mutation 14 77987865 C G 32 71 BRCA TCGA-BH-A0DZ SNW1 SNP Missense_Mutation 14 78198836 C A 29 89 BRCA TCGA-BH-A0DZ TRIP11 SNP Missense_Mutation 14 92471025 C T 32 99 BRCA TCGA-BH-A0DZ ATP10A SNP Silent 15 25928589 G A 33 69 BRCA TCGA-BH-A0DZ MYEF2 SNP Missense_Mutation 15 48443305 G C 33 69 BRCA TCGA-BH-A0DZ BBS4 SNP Silent 15 73024024 C T 29 87 BRCA TCGA-BH-A0DZ ZNF592 SNP Nonsense_Mutation 15 85326354 G T 45 95 BRCA TCGA-BH-A0DZ NTRK3 SNP Missense_Mutation 15 88472506 C G 30 61 BRCA TCGA-BH-A0DZ GSPT1 SNP Missense_Mutation 16 11971338 C G 32 93 BRCA TCGA-BH-A0DZ CACNA1H SNP Silent 16 1270974 G A 47 44 BRCA TCGA-BH-A0DZ NDE1 SNP Missense_Mutation 16 15785109 C T 30 93 BRCA TCGA-BH-A0DZ ARHGAP17 SNP Missense_Mutation 16 24965944 C T 30 84 BRCA TCGA-BH-A0DZ SRRM2 SNP Missense_Mutation 16 2815760 G A 37 80 BRCA TCGA-BH-A0DZ MAZ SNP Missense_Mutation 16 29819563 C G 29 59 BRCA TCGA-BH-A0DZ PRR14 SNP Missense_Mutation 16 30667567 G C 41 55 BRCA TCGA-BH-A0DZ RPGRIP1L SNP Missense_Mutation 16 53639477 C G 30 87 BRCA TCGA-BH-A0DZ THAP11 SNP Missense_Mutation 16 67876858 C T 29 77 BRCA TCGA-BH-A0DZ DPEP3 SNP Silent 16 68014005 G A 37 30 BRCA TCGA-BH-A0DZ NFATC3 SNP Missense_Mutation 16 68224697 G C 33 97 BRCA TCGA-BH-A0DZ NFATC3 SNP Missense_Mutation 16 68224886 G A 45 60 BRCA TCGA-BH-A0DZ FTSJD1 SNP Missense_Mutation 16 71319082 C G 32 98 BRCA TCGA-BH-A0DZ DNAH9 SNP Missense_Mutation 17 11806120 G A 37 94 BRCA TCGA-BH-A0DZ ZNF286B SNP Missense_Mutation 17 18566541 C T 32 75 BRCA TCGA-BH-A0DZ KRT9 SNP Missense_Mutation 17 39723875 C T 21 66 BRCA TCGA-BH-A0DZ KRT9 SNP Silent 17 39724461 C T 24 51 BRCA TCGA-BH-A0DZ KRT9 SNP Silent 17 39724521 C T 32 49 BRCA TCGA-BH-A0DZ KRT9 SNP Silent 17 39724602 C T 32 67 BRCA TCGA-BH-A0DZ KRT9 SNP Silent 17 39724823 C T 24 55 BRCA TCGA-BH-A0DZ JUP SNP Silent 17 39919553 C T 29 68 BRCA TCGA-BH-A0DZ EFTUD2 SNP Silent 17 42929858 G A 37 47 BRCA TCGA-BH-A0DZ TRIM37 SNP Missense_Mutation 17 57139966 G C 45 99 BRCA TCGA-BH-A0DZ RNFT1 SNP Missense_Mutation 17 58031484 C G 32 58 BRCA TCGA-BH-A0DZ MED13 SNP Missense_Mutation 17 60023893 G A 45 95 BRCA TCGA-BH-A0DZ MARCH10 SNP Missense_Mutation 17 60802440 C T 30 99 BRCA TCGA-BH-A0DZ MARCH10 SNP Silent 17 60821843 C G 29 58 BRCA TCGA-BH-A0DZ TEX2 SNP Missense_Mutation 17 62272330 C G 30 54 BRCA TCGA-BH-A0DZ KIAA0753 SNP Missense_Mutation 17 6515265 C G 32 63 BRCA TCGA-BH-A0DZ BPTF SNP Missense_Mutation 17 65916216 C G 29 61 BRCA TCGA-BH-A0DZ ABCA8 SNP Missense_Mutation 17 66881408 C T 29 47 BRCA TCGA-BH-A0DZ FBXO39 SNP Missense_Mutation 17 6690652 G A 45 76 BRCA TCGA-BH-A0DZ ABCA5 SNP Missense_Mutation 17 67260917 G A 45 75 BRCA TCGA-BH-A0DZ ABCA5 SNP Missense_Mutation 17 67260950 G C 33 81 BRCA TCGA-BH-A0DZ KCNJ2 SNP Missense_Mutation 17 68171693 C G 31 38 BRCA TCGA-BH-A0DZ TP53 SNP Missense_Mutation 17 7577509 C G 30 80 BRCA TCGA-BH-A0DZ PER1 SNP Silent 17 8051337 G A 45 50 BRCA TCGA-BH-A0DZ CCDC42 SNP Missense_Mutation 17 8647906 C G 32 66 BRCA TCGA-BH-A0DZ ANKRD30B SNP Missense_Mutation 18 14752623 G C 33 72 BRCA TCGA-BH-A0DZ C18orf25 DEL In_Frame_Del 18 43795948 TGTAGAACTGGAATCTCAAGTTCAGAA - 55 68 BRCA TCGA-BH-A0DZ DCC SNP Missense_Mutation 18 50929215 G A 40 73 BRCA TCGA-BH-A0DZ ZNF439 SNP Missense_Mutation 19 11978285 C T 32 72 BRCA TCGA-BH-A0DZ C19orf53 SNP Silent 19 13888907 G A 47 51 BRCA TCGA-BH-A0DZ CC2D1A SNP Missense_Mutation 19 14029787 G C 44 55 BRCA TCGA-BH-A0DZ ATP8B3 SNP Missense_Mutation 19 1783049 G A 37 38 BRCA TCGA-BH-A0DZ TMEM59L SNP Missense_Mutation 19 18731260 G A 37 60 BRCA TCGA-BH-A0DZ ZNF492 SNP Nonsense_Mutation 19 22847268 C G 29 52 BRCA TCGA-BH-A0DZ ZNF554 SNP Missense_Mutation 19 2832427 C A 30 50 BRCA TCGA-BH-A0DZ SCGB2B2 SNP Silent 19 35085143 G A 45 51 BRCA TCGA-BH-A0DZ TIMM50 SNP Missense_Mutation 19 39971368 G C 37 48 BRCA TCGA-BH-A0DZ ZNF780A SNP Missense_Mutation 19 40581547 G C 45 46 BRCA TCGA-BH-A0DZ PSG9 SNP Missense_Mutation 19 43763165 G C 45 49 BRCA TCGA-BH-A0DZ ZNF180 SNP Silent 19 45001414 G A 45 57 BRCA TCGA-BH-A0DZ LRG1 SNP Missense_Mutation 19 4538658 C T 23 40 BRCA TCGA-BH-A0DZ IRF2BP1 SNP Missense_Mutation 19 46388255 C T 31 92 BRCA TCGA-BH-A0DZ TRIM28 SNP Silent 19 59059687 C G 29 52 BRCA TCGA-BH-A0DZ TRIM28 SNP Missense_Mutation 19 59059946 C G 32 76 BRCA TCGA-BH-A0DZ REV1 SNP Silent 2 100065947 C T 29 59 BRCA TCGA-BH-A0DZ GPR17 SNP Silent 2 128409206 C T 31 43 BRCA TCGA-BH-A0DZ KIF5C SNP Silent 2 149806935 C T 29 88 BRCA TCGA-BH-A0DZ PKP4 SNP Missense_Mutation 2 159488403 G A 41 64 BRCA TCGA-BH-A0DZ ITGB6 SNP Missense_Mutation 2 160994606 C G 32 62 BRCA TCGA-BH-A0DZ IFIH1 SNP Silent 2 163139083 G A 36 76 BRCA TCGA-BH-A0DZ COL3A1 SNP Silent 2 189875538 G C 45 57 BRCA TCGA-BH-A0DZ SPHKAP SNP Missense_Mutation 2 228884261 C G 32 62 BRCA TCGA-BH-A0DZ ASXL2 SNP Missense_Mutation 2 25972681 C G 30 69 BRCA TCGA-BH-A0DZ C2orf16 SNP Missense_Mutation 2 27801094 C T 29 53 BRCA TCGA-BH-A0DZ EFEMP1 SNP Splice_Site 2 56144798 A T 14 84 BRCA TCGA-BH-A0DZ SMYD5 SNP Missense_Mutation 2 73447268 G C 33 96 BRCA TCGA-BH-A0DZ SNRNP200 SNP Silent 2 96944592 G A 33 75 BRCA TCGA-BH-A0DZ ANKRD36 SNP Silent 2 97783882 C T 32 51 BRCA TCGA-BH-A0DZ DZANK1 SNP Missense_Mutation 20 18429657 C T 29 56 BRCA TCGA-BH-A0DZ NINL SNP Missense_Mutation 20 25443055 C A 32 52 BRCA TCGA-BH-A0DZ ZNF337 SNP Missense_Mutation 20 25656844 C A 20 42 BRCA TCGA-BH-A0DZ PDRG1 SNP Silent 20 30534327 C A 29 66 BRCA TCGA-BH-A0DZ TTI1 SNP Silent 20 36641850 C T 29 57 BRCA TCGA-BH-A0DZ LPIN3 SNP Missense_Mutation 20 39985752 C T 23 84 BRCA TCGA-BH-A0DZ TNNC2 SNP Missense_Mutation 20 44452972 C G 32 81 BRCA TCGA-BH-A0DZ ARFGEF2 SNP Missense_Mutation 20 47601269 C G 29 65 BRCA TCGA-BH-A0DZ BRWD1 SNP Missense_Mutation 21 40571393 G C 33 63 BRCA TCGA-BH-A0DZ PDE9A SNP Splice_Site 21 44153465 G A 33 82 BRCA TCGA-BH-A0DZ ARVCF SNP Splice_Site 22 19959495 C G 32 88 BRCA TCGA-BH-A0DZ CABIN1 SNP Missense_Mutation 22 24481034 C G 29 97 BRCA TCGA-BH-A0DZ HPS4 SNP Missense_Mutation 22 26868878 C G 29 64 BRCA TCGA-BH-A0DZ DUSP18 SNP Silent 22 31059955 G A 41 60 BRCA TCGA-BH-A0DZ EP300 SNP Missense_Mutation 22 41573738 C T 32 58 BRCA TCGA-BH-A0DZ RANGAP1 SNP Missense_Mutation 22 41677000 G C 45 60 BRCA TCGA-BH-A0DZ ATXN10 SNP Missense_Mutation 22 46136266 C T 29 89 BRCA TCGA-BH-A0DZ LUZP4 SNP Missense_Mutation 23 114524374 C T 29 45 BRCA TCGA-BH-A0DZ MSL3 SNP Silent 23 11779010 C G 32 50 BRCA TCGA-BH-A0DZ IL13RA1 SNP Missense_Mutation 23 117895249 C G 32 49 BRCA TCGA-BH-A0DZ RNF113A SNP Missense_Mutation 23 119005192 C T 31 94 BRCA TCGA-BH-A0DZ GRIA3 SNP Silent 23 122528932 G A 45 64 BRCA TCGA-BH-A0DZ MAP7D3 SNP Missense_Mutation 23 135310810 C T 32 55 BRCA TCGA-BH-A0DZ CSF2RA SNP Silent 23 1407734 G A 37 39 BRCA TCGA-BH-A0DZ MAGEC1 SNP Missense_Mutation 23 140995393 G A 41 57 BRCA TCGA-BH-A0DZ PCYT1B SNP Missense_Mutation 23 24580566 C G 32 60 BRCA TCGA-BH-A0DZ FAM47B SNP Silent 23 34961041 G A 37 47 BRCA TCGA-BH-A0DZ MED14 SNP Silent 23 40569291 C T 32 58 BRCA TCGA-BH-A0DZ USP51 SNP Silent 23 55514740 C G 29 54 BRCA TCGA-BH-A0DZ MTMR8 SNP Silent 23 63548723 G A 45 58 BRCA TCGA-BH-A0DZ PJA1 SNP Missense_Mutation 23 68382802 C T 29 66 BRCA TCGA-BH-A0DZ TAF1 SNP Missense_Mutation 23 70683834 G A 37 71 BRCA TCGA-BH-A0DZ ERCC6L SNP Missense_Mutation 23 71426743 C G 32 62 BRCA TCGA-BH-A0DZ KIAA2022 SNP Missense_Mutation 23 73960911 C T 29 66 BRCA TCGA-BH-A0DZ MAGEE2 SNP Missense_Mutation 23 75004401 G C 41 47 BRCA TCGA-BH-A0DZ KLHL4 SNP Missense_Mutation 23 86869457 C A 32 94 BRCA TCGA-BH-A0DZ MYH15 SNP Missense_Mutation 3 108107918 G A 37 50 BRCA TCGA-BH-A0DZ ARHGAP31 SNP Missense_Mutation 3 119134755 G C 33 83 BRCA TCGA-BH-A0DZ POLQ SNP Missense_Mutation 3 121238843 G T 33 97 BRCA TCGA-BH-A0DZ ILDR1 SNP Silent 3 121720279 G A 45 61 BRCA TCGA-BH-A0DZ SEMA5B SNP Silent 3 122662297 G T 45 57 BRCA TCGA-BH-A0DZ ZXDC SNP Silent 3 126185056 G C 33 60 BRCA TCGA-BH-A0DZ VPS8 SNP Missense_Mutation 3 184543993 C G 30 95 BRCA TCGA-BH-A0DZ MAP3K13 SNP Silent 3 185165697 G C 45 54 BRCA TCGA-BH-A0DZ GOLGA4 SNP Nonsense_Mutation 3 37367848 C T 25 61 BRCA TCGA-BH-A0DZ GOLGA4 SNP Nonsense_Mutation 3 37368485 C G 29 66 BRCA TCGA-BH-A0DZ SCN5A SNP Silent 3 38655497 C T 29 72 BRCA TCGA-BH-A0DZ CDCP1 SNP Silent 3 45134773 G A 45 55 BRCA TCGA-BH-A0DZ FOXP1 SNP Silent 3 71247211 G C 45 41 BRCA TCGA-BH-A0DZ KIAA1109 SNP Missense_Mutation 4 123239318 G C 45 96 BRCA TCGA-BH-A0DZ TTC29 SNP Silent 4 147724765 G A 33 57 BRCA TCGA-BH-A0DZ FGA SNP Missense_Mutation 4 155507703 C A 30 76 BRCA TCGA-BH-A0DZ CLRN2 SNP Silent 4 17528651 G A 33 71 BRCA TCGA-BH-A0DZ SORBS2 SNP Missense_Mutation 4 186510869 C T 29 100 BRCA TCGA-BH-A0DZ PTTG2 SNP Missense_Mutation 4 37962331 G C 33 54 BRCA TCGA-BH-A0DZ FAM114A1 SNP Missense_Mutation 4 38879718 G A 45 63 BRCA TCGA-BH-A0DZ RFC1 SNP Silent 4 39310356 G C 45 59 BRCA TCGA-BH-A0DZ ZNF721 SNP Missense_Mutation 4 437193 G C 45 79 BRCA TCGA-BH-A0DZ TXK SNP Silent 4 48081956 C T 32 64 BRCA TCGA-BH-A0DZ PAICS SNP Missense_Mutation 4 57314891 G C 45 63 BRCA TCGA-BH-A0DZ TBC1D14 SNP Silent 4 7026815 C T 30 47 BRCA TCGA-BH-A0DZ UGT2B4 SNP Missense_Mutation 4 70346610 C G 29 64 BRCA TCGA-BH-A0DZ SHROOM3 SNP Missense_Mutation 4 77357221 G A 45 82 BRCA TCGA-BH-A0DZ FRAS1 SNP Missense_Mutation 4 79188530 G A 45 52 BRCA TCGA-BH-A0DZ WDFY3 SNP Splice_Site 4 85762417 C A 32 100 BRCA TCGA-BH-A0DZ HERC5 SNP Nonsense_Mutation 4 89388332 C A 29 69 BRCA TCGA-BH-A0DZ TRPC7 SNP Missense_Mutation 5 135549141 G T 48 57 BRCA TCGA-BH-A0DZ CD14 SNP Splice_Site 5 140012778 C T 32 53 BRCA TCGA-BH-A0DZ CAMK2A SNP Missense_Mutation 5 149636190 G C 41 63 BRCA TCGA-BH-A0DZ SLC38A9 SNP Silent 5 54923793 C G 29 53 BRCA TCGA-BH-A0DZ MAP3K1 SNP Missense_Mutation 5 56171088 T C 55 87 BRCA TCGA-BH-A0DZ DEPDC1B SNP Missense_Mutation 5 59941334 G A 33 94 BRCA TCGA-BH-A0DZ ARSB SNP Missense_Mutation 5 78181569 C T 31 99 BRCA TCGA-BH-A0DZ HS3ST5 SNP Silent 6 114379009 G A 45 56 BRCA TCGA-BH-A0DZ ECHDC1 SNP Missense_Mutation 6 127648195 G C 33 52 BRCA TCGA-BH-A0DZ KIAA0408 SNP Missense_Mutation 6 127771455 C T 29 64 BRCA TCGA-BH-A0DZ MAP3K5 SNP Missense_Mutation 6 136990511 C T 29 98 BRCA TCGA-BH-A0DZ CCDC90A SNP Missense_Mutation 6 13801528 C G 32 72 BRCA TCGA-BH-A0DZ UTRN SNP Nonsense_Mutation 6 145103087 G T 45 73 BRCA TCGA-BH-A0DZ RMND1 SNP Missense_Mutation 6 151766844 C T 30 57 BRCA TCGA-BH-A0DZ SYNE1 SNP Missense_Mutation 6 152642474 C G 32 97 BRCA TCGA-BH-A0DZ FNDC1 SNP Silent 6 159650875 C G 29 82 BRCA TCGA-BH-A0DZ MLLT4 SNP Missense_Mutation 6 168352759 G C 33 70 BRCA TCGA-BH-A0DZ NUP153 SNP Missense_Mutation 6 17637546 C G 29 62 BRCA TCGA-BH-A0DZ KIF13A SNP Silent 6 17797021 G A 33 57 BRCA TCGA-BH-A0DZ KIAA0319 SNP Missense_Mutation 6 24596268 C G 30 55 BRCA TCGA-BH-A0DZ C6orf62 SNP Splice_site 6 24706365 C G 32 60 BRCA TCGA-BH-A0DZ HIST1H1C SNP Missense_Mutation 6 26056039 C A 32 70 BRCA TCGA-BH-A0DZ MAS1L SNP Silent 6 29455047 G A 41 50 BRCA TCGA-BH-A0DZ MAS1L SNP Missense_Mutation 6 29455193 G A 33 50 BRCA TCGA-BH-A0DZ PRRT1 SNP Silent 6 32117479 C T 23 41 BRCA TCGA-BH-A0DZ C6orf10 SNP Silent 6 32261367 C T 29 50 BRCA TCGA-BH-A0DZ DNAH8 SNP Missense_Mutation 6 38891783 C G 32 58 BRCA TCGA-BH-A0DZ CUL7 SNP Splice_Site 6 43010724 T G 55 90 BRCA TCGA-BH-A0DZ MEP1A SNP Missense_Mutation 6 46806828 G C 45 52 BRCA TCGA-BH-A0DZ PKHD1 SNP Missense_Mutation 6 51503731 C G 32 55 BRCA TCGA-BH-A0DZ PKHD1 SNP Missense_Mutation 6 51890550 G C 41 57 BRCA TCGA-BH-A0DZ MLIP SNP Silent 6 54066989 C T 29 54 BRCA TCGA-BH-A0DZ FAM83B SNP Missense_Mutation 6 54806423 C T 32 77 BRCA TCGA-BH-A0DZ MTO1 SNP Nonsense_Mutation 6 74192270 G T 45 58 BRCA TCGA-BH-A0DZ MAP3K7 SNP Missense_Mutation 6 91260217 C T 29 77 BRCA TCGA-BH-A0DZ COQ3 SNP Missense_Mutation 6 99817588 G A 41 74 BRCA TCGA-BH-A0DZ RELN SNP Missense_Mutation 7 103322585 C T 32 91 BRCA TCGA-BH-A0DZ DOCK4 SNP Silent 7 111575671 C T 32 70 BRCA TCGA-BH-A0DZ CHPF2 SNP Silent 7 150932659 C T 29 54 BRCA TCGA-BH-A0DZ FERD3L SNP Silent 7 19184707 C T 32 63 BRCA TCGA-BH-A0DZ DNAH11 SNP Missense_Mutation 7 21813441 G C 45 66 BRCA TCGA-BH-A0DZ TAX1BP1 SNP Silent 7 27839637 G A 45 73 BRCA TCGA-BH-A0DZ BBS9 SNP Silent 7 33545131 C T 29 52 BRCA TCGA-BH-A0DZ C7orf10 SNP Splice_Site 7 40220545 G C 33 84 BRCA TCGA-BH-A0DZ POM121 SNP Missense_Mutation 7 72397433 G C 33 65 BRCA TCGA-BH-A0DZ ACN9 SNP Missense_Mutation 7 96747105 C T 26 93 BRCA TCGA-BH-A0DZ VPS13B SNP Missense_Mutation 8 100866400 G A 45 97 BRCA TCGA-BH-A0DZ ABRA SNP Silent 8 107781891 C T 29 65 BRCA TCGA-BH-A0DZ ADCY8 SNP Missense_Mutation 8 131826325 C T 31 84 BRCA TCGA-BH-A0DZ COL22A1 SNP Missense_Mutation 8 139606409 G A 39 97 BRCA TCGA-BH-A0DZ PHYHIP SNP Missense_Mutation 8 22084524 C A 28 56 BRCA TCGA-BH-A0DZ WRN SNP Silent 8 30982427 C T 29 72 BRCA TCGA-BH-A0DZ UNC5D SNP Silent 8 35542203 C G 29 64 BRCA TCGA-BH-A0DZ CHD7 SNP Missense_Mutation 8 61654206 A G 16 68 BRCA TCGA-BH-A0DZ RNF20 SNP Missense_Mutation 9 104313984 C T 29 99 BRCA TCGA-BH-A0DZ ST6GALNAC6 SNP Silent 9 130653020 G A 41 99 BRCA TCGA-BH-A0DZ CERCAM SNP Silent 9 131196437 G A 33 61 BRCA TCGA-BH-A0DZ PTGDS SNP Missense_Mutation 9 139873688 G A 45 64 BRCA TCGA-BH-A0DZ IFNA1 SNP Missense_Mutation 9 21441024 G A 33 55 BRCA TCGA-BH-A0DZ CCL21 SNP Missense_Mutation 9 34709557 C T 24 48 BRCA TCGA-BH-A0DZ RANBP6 SNP Missense_Mutation 9 6015088 C G 32 61 BRCA TCGA-BH-A0DZ TMEM252 SNP Silent 9 71155566 C T 29 64 BRCA TCGA-BH-A0DZ PCSK5 SNP Missense_Mutation 9 78804645 G C 41 95 BRCA TCGA-BH-A0E0 RPTN SNP Missense_Mutation 1 152128599 C A 24 51 BRCA TCGA-BH-A0E0 APCS SNP Missense_Mutation 1 159558311 A G 3 52 BRCA TCGA-BH-A0E0 EPRS INS In_Frame_Ins 1 220162120 - ATC 45 75 BRCA TCGA-BH-A0E0 COL8A2 SNP Missense_Mutation 1 36563540 A G 11 90 BRCA TCGA-BH-A0E0 ZC3H12A SNP Missense_Mutation 1 37949096 G A 47 77 BRCA TCGA-BH-A0E0 C1orf122 SNP Missense_Mutation 1 38274781 C A 30 63 BRCA TCGA-BH-A0E0 TUBGCP2 SNP Silent 10 135106688 C T 23 34 BRCA TCGA-BH-A0E0 SKIDA1 SNP Missense_Mutation 10 21805245 C G 23 58 BRCA TCGA-BH-A0E0 WAC SNP Missense_Mutation 10 28905131 A G 4 80 BRCA TCGA-BH-A0E0 SNP Missense_Mutation 10 30998304 G A 40 50 BRCA TCGA-BH-A0E0 VSTM4 SNP Missense_Mutation 10 50285301 G C 37 54 BRCA TCGA-BH-A0E0 DPAGT1 SNP Missense_Mutation 11 118967995 G A 35 72 BRCA TCGA-BH-A0E0 ODZ4 SNP Silent 11 78437179 C A 19 49 BRCA TCGA-BH-A0E0 FAM186A SNP Missense_Mutation 12 50747920 T C 64 49 BRCA TCGA-BH-A0E0 WNK1 SNP Missense_Mutation 12 977147 C G 23 98 BRCA TCGA-BH-A0E0 FAM63B SNP Missense_Mutation 15 59063938 C T 26 75 BRCA TCGA-BH-A0E0 TUFM SNP Missense_Mutation 16 28855746 C T 19 57 BRCA TCGA-BH-A0E0 HYDIN SNP Missense_Mutation 16 70916787 C T 31 71 BRCA TCGA-BH-A0E0 ACE DEL Frame_Shift_Del 17 61557164 C - 19 45 BRCA TCGA-BH-A0E0 TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-BH-A0E0 LAMA1 SNP Nonsense_Mutation 18 7050726 A C 4 52 BRCA TCGA-BH-A0E0 ZNF516 SNP Missense_Mutation 18 74091656 C A 28 50 BRCA TCGA-BH-A0E0 ZNF808 SNP Missense_Mutation 19 53056786 A G 4 69 BRCA TCGA-BH-A0E0 ZNF470 SNP Silent 19 57089741 T C 56 50 BRCA TCGA-BH-A0E0 ZNF548 SNP Missense_Mutation 19 57910907 G C 33 74 BRCA TCGA-BH-A0E0 SNTG2 SNP Silent 2 1204905 G A 39 47 BRCA TCGA-BH-A0E0 NEB SNP Missense_Mutation 2 152501038 G A 41 66 BRCA TCGA-BH-A0E0 ALK SNP Nonsense_Mutation 2 29432665 G A 39 74 BRCA TCGA-BH-A0E0 MXRA5 SNP Missense_Mutation 23 3238686 T G 60 40 BRCA TCGA-BH-A0E0 MXRA5 SNP Missense_Mutation 23 3239606 A T 3 49 BRCA TCGA-BH-A0E0 SLC16A2 SNP Missense_Mutation 23 73744298 G A 38 96 BRCA TCGA-BH-A0E0 SCN11A SNP Missense_Mutation 3 38941399 G A 38 63 BRCA TCGA-BH-A0E0 RHOA SNP Missense_Mutation 3 49413010 G A 39 52 BRCA TCGA-BH-A0E0 ARSB SNP Missense_Mutation 5 78181573 C T 19 46 BRCA TCGA-BH-A0E0 SYNE1 SNP Missense_Mutation 6 152472809 C T 19 100 BRCA TCGA-BH-A0E0 FGD2 SNP Missense_Mutation 6 36976680 G A 37 41 BRCA TCGA-BH-A0E0 TNFRSF21 SNP Silent 6 47221133 G A 40 43 BRCA TCGA-BH-A0E0 MUC17 SNP Missense_Mutation 7 100683830 A T 3 56 BRCA TCGA-BH-A0E0 SDK1 SNP Silent 7 4285428 A C 7 15 BRCA TCGA-BH-A0E0 RABGAP1 SNP Nonsense_Mutation 9 125746848 G T 41 68 BRCA TCGA-BH-A0E0 NELF SNP Silent 9 140344399 A T 9 46 BRCA TCGA-BH-A0E0 DAPK1 SNP Missense_Mutation 9 90321914 C T 31 71 BRCA TCGA-BH-A0E1 UFC1 SNP Missense_Mutation 1 161127913 G C 44 94 BRCA TCGA-BH-A0E1 DDR2 SNP Missense_Mutation 1 162731228 G C 33 63 BRCA TCGA-BH-A0E1 SERPINC1 SNP Missense_Mutation 1 173886366 G A 33 57 BRCA TCGA-BH-A0E1 UBR4 SNP Missense_Mutation 1 19468234 C G 32 60 BRCA TCGA-BH-A0E1 PCNXL2 SNP Missense_Mutation 1 233344363 C G 29 84 BRCA TCGA-BH-A0E1 OSCP1 SNP Missense_Mutation 1 36915874 C G 32 92 BRCA TCGA-BH-A0E1 OR8H2 SNP Silent 11 55872938 C T 32 49 BRCA TCGA-BH-A0E1 TAS2R10 SNP Nonsense_Mutation 12 10978407 A C 16 42 BRCA TCGA-BH-A0E1 PRPF40B DEL Frame_Shift_Del 12 50025689 CGGTGCCTGTC - 27 61 BRCA TCGA-BH-A0E1 KRT71 SNP Missense_Mutation 12 52940265 G A 34 67 BRCA TCGA-BH-A0E1 NCAPD2 SNP Silent 12 6630248 C G 32 52 BRCA TCGA-BH-A0E1 CHD4 SNP Missense_Mutation 12 6702280 G A 37 54 BRCA TCGA-BH-A0E1 ISM2 SNP Missense_Mutation 14 77948868 T C 62 65 BRCA TCGA-BH-A0E1 ITGA11 SNP Silent 15 68631959 G T 37 22 BRCA TCGA-BH-A0E1 MAPK3 SNP Missense_Mutation 16 30129759 G A 38 84 BRCA TCGA-BH-A0E1 TMEM106A SNP Silent 17 41368593 T C 56 55 BRCA TCGA-BH-A0E1 VAMP2 SNP Silent 17 8064834 G A 45 52 BRCA TCGA-BH-A0E1 DDX49 SNP Missense_Mutation 19 19031392 G A 37 74 BRCA TCGA-BH-A0E1 APOB SNP Missense_Mutation 2 21236250 C T 31 44 BRCA TCGA-BH-A0E1 ALK SNP Silent 2 29917810 C T 32 61 BRCA TCGA-BH-A0E1 TLR7 SNP Missense_Mutation 23 12903835 C T 24 83 BRCA TCGA-BH-A0E1 DCAF8L2 SNP Silent 23 27765579 C T 31 48 BRCA TCGA-BH-A0E1 DGKG SNP Silent 3 185985540 C T 19 43 BRCA TCGA-BH-A0E1 PPARGC1A SNP Missense_Mutation 4 23814725 C T 28 67 BRCA TCGA-BH-A0E1 TMEM167A SNP Missense_Mutation 5 82352947 C T 20 61 BRCA TCGA-BH-A0E1 SIM1 SNP Silent 6 100897266 G A 40 46 BRCA TCGA-BH-A0E1 MTHFD1L SNP Splice_site 6 151247259 G A 45 99 BRCA TCGA-BH-A0E1 ZBTB22 SNP Missense_Mutation 6 33284027 C T 32 72 BRCA TCGA-BH-A0E1 ESYT2 SNP Silent 7 158552764 C T 19 15 BRCA TCGA-BH-A0E1 VPS13B SNP Missense_Mutation 8 100520093 T C 50 77 BRCA TCGA-BH-A0E1 TLR4 SNP Missense_Mutation 9 120476816 C T 27 46 BRCA TCGA-BH-A0E2 CASZ1 SNP Missense_Mutation 1 10711031 T C 58 73 BRCA TCGA-BH-A0E2 C1orf144 SNP Missense_Mutation 1 16721598 G A 44 97 BRCA TCGA-BH-A0E2 SELP SNP Missense_Mutation 1 169588391 G A 35 51 BRCA TCGA-BH-A0E2 MLLT10 SNP Nonsense_Mutation 10 21884363 T A 49 49 BRCA TCGA-BH-A0E2 TET1 SNP Silent 10 70406122 A G 1 64 BRCA TCGA-BH-A0E2 C10orf27 SNP Missense_Mutation 10 72539416 C T 21 51 BRCA TCGA-BH-A0E2 MMP8 SNP Silent 11 102586044 G A 35 50 BRCA TCGA-BH-A0E2 POLE SNP Missense_Mutation 12 133248878 G A 38 67 BRCA TCGA-BH-A0E2 SCN8A SNP Missense_Mutation 12 52145348 T G 52 90 BRCA TCGA-BH-A0E2 ATN1 SNP Silent 12 7047646 G A 36 56 BRCA TCGA-BH-A0E2 TPH2 SNP Missense_Mutation 12 72388322 G A 45 100 BRCA TCGA-BH-A0E2 KCNC2 SNP Silent 12 75444552 G A 40 51 BRCA TCGA-BH-A0E2 PCK2 SNP Splice_site 14 24568928 A C 3 44 BRCA TCGA-BH-A0E2 FANCM INS Frame_Shift_Ins 14 45644374 - T 36 46 BRCA TCGA-BH-A0E2 CGRRF1 SNP Missense_Mutation 14 54996904 G T 33 66 BRCA TCGA-BH-A0E2 MED24 SNP Missense_Mutation 17 38182541 A T 6 90 BRCA TCGA-BH-A0E2 EMILIN2 SNP Missense_Mutation 18 2909695 C T 23 50 BRCA TCGA-BH-A0E2 MYOM1 SNP Silent 18 3090726 C T 24 57 BRCA TCGA-BH-A0E2 LONP1 SNP Splice_Site 19 5708352 C T 18 77 BRCA TCGA-BH-A0E2 DCAF17 SNP Missense_Mutation 2 172291597 G A 36 73 BRCA TCGA-BH-A0E2 SP140 SNP Missense_Mutation 2 231176276 G A 38 57 BRCA TCGA-BH-A0E2 BPI SNP Splice_site 20 36962894 C T 19 37 BRCA TCGA-BH-A0E2 PPP1R3D SNP Missense_Mutation 20 58514508 G C 39 56 BRCA TCGA-BH-A0E2 GDI1 SNP Missense_Mutation 23 153668416 C T 23 66 BRCA TCGA-BH-A0E2 GLT8D1 SNP Missense_Mutation 3 52728920 C A 32 100 BRCA TCGA-BH-A0E2 MAML3 SNP Missense_Mutation 4 140811265 G A 39 74 BRCA TCGA-BH-A0E2 LETM1 SNP Missense_Mutation 4 1836578 G T 41 53 BRCA TCGA-BH-A0E2 OTP SNP Missense_Mutation 5 76932789 G T 48 98 BRCA TCGA-BH-A0E2 REV3L SNP Missense_Mutation 6 111695272 A G 4 55 BRCA TCGA-BH-A0E2 KPNA5 SNP Missense_Mutation 6 117050794 T C 58 93 BRCA TCGA-BH-A0E2 PEX6 SNP Silent 6 42942732 G A 34 60 BRCA TCGA-BH-A0E2 ABCF2 SNP Silent 7 150919671 G A 35 69 BRCA TCGA-BH-A0E2 FAM188B SNP Silent 7 30818062 A C 8 44 BRCA TCGA-BH-A0E2 TSNARE1 SNP Missense_Mutation 8 143425597 G A 37 52 BRCA TCGA-BH-A0E2 RB1CC1 SNP Missense_Mutation 8 53558327 C T 32 65 BRCA TCGA-BH-A0E2 APTX SNP Missense_Mutation 9 32987555 G C 46 49 BRCA TCGA-BH-A0E6 MTOR SNP Missense_Mutation 1 11313969 T C 52 88 BRCA TCGA-BH-A0E6 NOTCH2 DEL Frame_Shift_Del 1 120484229 G - 40 46 BRCA TCGA-BH-A0E6 RIIAD1 SNP Missense_Mutation 1 151687003 G T 44 59 BRCA TCGA-BH-A0E6 UBR4 SNP Missense_Mutation 1 19404496 C G 19 94 BRCA TCGA-BH-A0E6 OR2T12 SNP Missense_Mutation 1 248458340 C T 19 49 BRCA TCGA-BH-A0E6 EIF2C1 SNP Missense_Mutation 1 36372581 G A 46 100 BRCA TCGA-BH-A0E6 POLL SNP Missense_Mutation 10 103339232 T C 62 74 BRCA TCGA-BH-A0E6 SVIL SNP Missense_Mutation 10 29756715 G A 42 100 BRCA TCGA-BH-A0E6 LRIT2 SNP Missense_Mutation 10 85984158 A T 3 48 BRCA TCGA-BH-A0E6 SORBS1 SNP Missense_Mutation 10 97158839 G A 38 53 BRCA TCGA-BH-A0E6 KIAA1377 SNP Missense_Mutation 11 101833078 G A 33 55 BRCA TCGA-BH-A0E6 DRD2 SNP Silent 11 113286299 G A 37 48 BRCA TCGA-BH-A0E6 API5 SNP Missense_Mutation 11 43364082 G A 34 52 BRCA TCGA-BH-A0E6 RELA SNP Splice_Site 11 65427261 T C 53 49 BRCA TCGA-BH-A0E6 NOX4 SNP Missense_Mutation 11 89166019 C T 21 77 BRCA TCGA-BH-A0E6 P2RX7 SNP Silent 12 121615126 C T 31 59 BRCA TCGA-BH-A0E6 SLC6A12 SNP Missense_Mutation 12 306621 C A 26 82 BRCA TCGA-BH-A0E6 ADCY6 SNP Missense_Mutation 12 49176644 C G 19 52 BRCA TCGA-BH-A0E6 LRIG3 SNP Missense_Mutation 12 59271347 C T 31 88 BRCA TCGA-BH-A0E6 RASA3 SNP Splice_site 13 114806570 C G 22 92 BRCA TCGA-BH-A0E6 NHLRC3 SNP Missense_Mutation 13 39612843 C G 27 63 BRCA TCGA-BH-A0E6 AHNAK2 SNP Silent 14 105409182 C T 23 25 BRCA TCGA-BH-A0E6 NEK9 SNP Nonsense_Mutation 14 75580953 G A 47 68 BRCA TCGA-BH-A0E6 WDR76 SNP Missense_Mutation 15 44149283 C A 18 54 BRCA TCGA-BH-A0E6 TMEM101 SNP Missense_Mutation 17 42092199 C T 24 95 BRCA TCGA-BH-A0E6 ABCA9 SNP Silent 17 66981200 C T 28 59 BRCA TCGA-BH-A0E6 TP53 INS Frame_Shift_Ins 17 7577566 - A 61 85 BRCA TCGA-BH-A0E6 VAPA SNP Missense_Mutation 18 9931897 G C 38 100 BRCA TCGA-BH-A0E6 RPS5 SNP Missense_Mutation 19 58904744 G C 44 91 BRCA TCGA-BH-A0E6 TIMM44 SNP Silent 19 8006002 G A 38 40 BRCA TCGA-BH-A0E6 MYO1F SNP Silent 19 8592341 C T 27 41 BRCA TCGA-BH-A0E6 MYL1 SNP Missense_Mutation 2 211159027 G C 48 80 BRCA TCGA-BH-A0E6 ASXL2 SNP Nonsense_Mutation 2 25973203 G A 48 76 BRCA TCGA-BH-A0E6 TMCC1 SNP Missense_Mutation 3 129546708 C G 28 74 BRCA TCGA-BH-A0E6 GBE1 SNP Missense_Mutation 3 81695559 A C 3 89 BRCA TCGA-BH-A0E6 GALNT7 SNP Nonsense_Mutation 4 174216642 C T 19 58 BRCA TCGA-BH-A0E6 LNX1 SNP Silent 4 54364837 G T 39 62 BRCA TCGA-BH-A0E6 PRDM8 SNP Missense_Mutation 4 81124519 C T 23 72 BRCA TCGA-BH-A0E6 ZFR SNP Missense_Mutation 5 32397416 C T 23 88 BRCA TCGA-BH-A0E6 TNPO1 SNP Missense_Mutation 5 72187661 C T 30 96 BRCA TCGA-BH-A0E6 OPRM1 SNP Missense_Mutation 6 154414532 G A 40 46 BRCA TCGA-BH-A0E6 TIAM2 SNP Missense_Mutation 6 155450938 C T 23 92 BRCA TCGA-BH-A0E6 INTS1 SNP Missense_Mutation 7 1527532 G A 39 66 BRCA TCGA-BH-A0E6 TSPAN13 SNP Silent 7 16816717 C T 27 56 BRCA TCGA-BH-A0E6 LANCL2 SNP Splice_site 7 55492947 G T 44 54 BRCA TCGA-BH-A0E6 FAM220A SNP Missense_Mutation 7 6370439 C T 23 44 BRCA TCGA-BH-A0E6 LRP12 DEL Frame_Shift_Del 8 105503549 GTGA - 48 77 BRCA TCGA-BH-A0E6 SLCO5A1 SNP Missense_Mutation 8 70585447 C T 19 100 BRCA TCGA-BH-A0E6 PRPF4 SNP Silent 9 116038854 C T 20 55 BRCA TCGA-BH-A0E7 KIRREL SNP Missense_Mutation 1 158061187 C A 24 63 BRCA TCGA-BH-A0E7 MST1P9 SNP Missense_Mutation 1 17084538 G C 41 54 BRCA TCGA-BH-A0E7 ARID1A SNP Splice_site 1 27099478 G A 35 97 BRCA TCGA-BH-A0E7 MTF1 SNP Splice_site 1 38289483 G A 44 61 BRCA TCGA-BH-A0E7 ADAM12 SNP Missense_Mutation 10 127708377 G T 44 50 BRCA TCGA-BH-A0E7 PALD1 SNP Missense_Mutation 10 72298084 C T 22 68 BRCA TCGA-BH-A0E7 PRF1 SNP Missense_Mutation 10 72358324 G A 38 50 BRCA TCGA-BH-A0E7 MYOZ1 SNP Splice_Site 10 75394240 G A 46 54 BRCA TCGA-BH-A0E7 SLC22A11 SNP Silent 11 64323714 G T 42 51 BRCA TCGA-BH-A0E7 DPF2 SNP Silent 11 65116380 G A 40 42 BRCA TCGA-BH-A0E7 SCYL1 SNP Nonsense_Mutation 11 65305349 C T 29 52 BRCA TCGA-BH-A0E7 PDE2A SNP Splice_site 11 72300219 G A 39 48 BRCA TCGA-BH-A0E7 TBX3 DEL Frame_Shift_Del 12 115109800 T - 60 65 BRCA TCGA-BH-A0E7 XPOT SNP Missense_Mutation 12 64818467 T C 55 91 BRCA TCGA-BH-A0E7 TRPC4 SNP Missense_Mutation 13 38237581 A T 8 94 BRCA TCGA-BH-A0E7 C14orf39 SNP Nonsense_Mutation 14 60938273 G A 37 49 BRCA TCGA-BH-A0E7 LYSMD4 SNP Missense_Mutation 15 100271565 T C 49 54 BRCA TCGA-BH-A0E7 CDC27 SNP Missense_Mutation 17 45219239 C T 29 98 BRCA TCGA-BH-A0E7 ZNF98 SNP Missense_Mutation 19 22586248 C T 27 49 BRCA TCGA-BH-A0E7 UQCRFS1 SNP Silent 19 29698494 C T 19 27 BRCA TCGA-BH-A0E7 UXS1 SNP Missense_Mutation 2 106761718 C T 19 99 BRCA TCGA-BH-A0E7 CYP20A1 SNP Missense_Mutation 2 204137424 A G 12 83 BRCA TCGA-BH-A0E7 C2orf16 SNP Silent 2 27804476 C T 27 52 BRCA TCGA-BH-A0E7 DYSF SNP Missense_Mutation 2 71744138 T C 54 69 BRCA TCGA-BH-A0E7 C2orf90 SNP Silent 2 905334 A G 1 51 BRCA TCGA-BH-A0E7 HIRA SNP Nonsense_Mutation 22 19349345 G A 38 60 BRCA TCGA-BH-A0E7 RGL4 SNP Missense_Mutation 22 24040406 G A 37 52 BRCA TCGA-BH-A0E7 ARHGEF6 SNP Silent 23 135772826 T C 51 47 BRCA TCGA-BH-A0E7 F8 SNP Silent 23 154194350 T A 50 47 BRCA TCGA-BH-A0E7 PHEX SNP Missense_Mutation 23 22245690 T A 52 64 BRCA TCGA-BH-A0E7 ZMYM3 DEL Frame_Shift_Del 23 70467688 AGTA - 7 85 BRCA TCGA-BH-A0E7 EPHB1 SNP Missense_Mutation 3 134880927 G A 39 79 BRCA TCGA-BH-A0E7 CISH SNP Silent 3 50645371 T C 59 35 BRCA TCGA-BH-A0E7 TLR2 SNP Nonsense_Mutation 4 154624747 C T 27 53 BRCA TCGA-BH-A0E7 ZNF131 SNP Silent 5 43174806 A G 14 47 BRCA TCGA-BH-A0E7 MAP3K1 DEL Frame_Shift_Del 5 56155572 G - 47 78 BRCA TCGA-BH-A0E7 SLC35B2 SNP Missense_Mutation 6 44223035 T G 62 92 BRCA TCGA-BH-A0E7 CD36 SNP Splice_site 7 80285857 A T 5 71 BRCA TCGA-BH-A0E7 MTMR9 INS Frame_Shift_Ins 8 11180161 - TT 32 95 BRCA TCGA-BH-A0E7 COL22A1 SNP Missense_Mutation 8 139890151 C T 27 54 BRCA TCGA-BH-A0E7 TMOD1 SNP Missense_Mutation 9 100308545 C A 28 97 BRCA TCGA-BH-A0E9 LMO4 SNP Missense_Mutation 1 87805767 C T 23 100 BRCA TCGA-BH-A0E9 PTEN DEL Splice_Site 10 89685316 T - 57 89 BRCA TCGA-BH-A0E9 INTS4 INS Frame_Shift_Ins 11 77702264 - T 28 97 BRCA TCGA-BH-A0E9 ACACB SNP Missense_Mutation 12 109617027 G T 34 77 BRCA TCGA-BH-A0E9 ESPL1 SNP Silent 12 53663662 C A 21 52 BRCA TCGA-BH-A0E9 CDH1 INS Frame_Shift_Ins 16 68862178 - AT 45 98 BRCA TCGA-BH-A0E9 CAMTA2 SNP Missense_Mutation 17 4883016 G C 44 53 BRCA TCGA-BH-A0E9 SLC25A53 SNP Missense_Mutation 23 103349492 C T 27 64 BRCA TCGA-BH-A0E9 KLHL6 SNP Silent 3 183209733 G A 39 20 BRCA TCGA-BH-A0E9 RBM5 DEL Frame_Shift_Del 3 50151449 T - 56 78 BRCA TCGA-BH-A0E9 PCDHB3 SNP Silent 5 140482342 T C 64 34 BRCA TCGA-BH-A0E9 CNBD1 SNP Silent 8 88365988 C T 25 57 BRCA TCGA-BH-A0EA PTPRU SNP Missense_Mutation 1 29630376 G A 38 55 BRCA TCGA-BH-A0EA GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-BH-A0EA GPR162 SNP Missense_Mutation 12 6936041 G A 38 59 BRCA TCGA-BH-A0EA CLEC4C SNP Missense_Mutation 12 7890152 G T 44 43 BRCA TCGA-BH-A0EA CLEC4A SNP Missense_Mutation 12 8290866 A T 12 49 BRCA TCGA-BH-A0EA TC2N SNP Missense_Mutation 14 92278710 A G 12 61 BRCA TCGA-BH-A0EA RABEP2 SNP Silent 16 28935782 C T 21 63 BRCA TCGA-BH-A0EA CBFB SNP Missense_Mutation 16 67100613 A G 4 89 BRCA TCGA-BH-A0EA SDK2 SNP Missense_Mutation 17 71394498 G A 41 94 BRCA TCGA-BH-A0EA RTTN SNP Nonsense_Mutation 18 67727270 C A 30 80 BRCA TCGA-BH-A0EA TSHZ3 SNP Missense_Mutation 19 31767562 C T 25 100 BRCA TCGA-BH-A0EA PTPN4 SNP Missense_Mutation 2 120725478 A G 4 63 BRCA TCGA-BH-A0EA CD93 SNP Silent 20 23066476 G A 38 42 BRCA TCGA-BH-A0EA PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A0EA TXNDC15 SNP Nonsense_Mutation 5 134210139 C T 19 59 BRCA TCGA-BH-A0EA PKD2L2 SNP Missense_Mutation 5 137244512 G A 40 100 BRCA TCGA-BH-A0EA PDZD2 SNP Missense_Mutation 5 31799548 G A 37 93 BRCA TCGA-BH-A0EA XPO5 SNP Missense_Mutation 6 43538686 G C 33 53 BRCA TCGA-BH-A0EA ZNF425 SNP Missense_Mutation 7 148801590 C T 27 42 BRCA TCGA-BH-A0EA EIF2AK1 SNP Silent 7 6085747 T A 61 51 BRCA TCGA-BH-A0EA COL14A1 SNP Missense_Mutation 8 121238949 G A 45 84 BRCA TCGA-BH-A0EA PRKDC SNP Missense_Mutation 8 48839867 C T 26 74 BRCA TCGA-BH-A0EB CHRNB2 INS Frame_Shift_Ins 1 154544053 - CCATC 34 73 BRCA TCGA-BH-A0EB NTRK1 SNP Missense_Mutation 1 156843599 G A 39 61 BRCA TCGA-BH-A0EB SPEN SNP Silent 1 16254679 G A 43 49 BRCA TCGA-BH-A0EB GCLM SNP Missense_Mutation 1 94354623 A C 14 92 BRCA TCGA-BH-A0EB WDR96 SNP Missense_Mutation 10 105922136 G A 39 65 BRCA TCGA-BH-A0EB SORCS1 SNP Missense_Mutation 10 108412155 C G 21 66 BRCA TCGA-BH-A0EB DNAH10 SNP Silent 12 124387592 C T 29 60 BRCA TCGA-BH-A0EB SENP1 DEL Frame_Shift_Del 12 48440181 AT - 8 54 BRCA TCGA-BH-A0EB SRGAP1 SNP Missense_Mutation 12 64472709 C T 19 98 BRCA TCGA-BH-A0EB ABCC6 SNP Missense_Mutation 16 16315544 C A 22 56 BRCA TCGA-BH-A0EB ATP2A1 SNP Silent 16 28909329 C A 26 58 BRCA TCGA-BH-A0EB RAVER1 SNP Missense_Mutation 19 10434107 C T 27 89 BRCA TCGA-BH-A0EB DOCK6 SNP Missense_Mutation 19 11311605 C T 17 94 BRCA TCGA-BH-A0EB MYO9B SNP Splice_site 19 17313112 G T 35 85 BRCA TCGA-BH-A0EB MEGF8 SNP Missense_Mutation 19 42840407 C T 19 53 BRCA TCGA-BH-A0EB ZNF765 SNP Missense_Mutation 19 53911368 A G 8 53 BRCA TCGA-BH-A0EB IL1RL2 SNP Missense_Mutation 2 102804317 C G 22 62 BRCA TCGA-BH-A0EB PDE11A SNP Missense_Mutation 2 178565928 G A 42 98 BRCA TCGA-BH-A0EB USP39 SNP Silent 2 85857864 T G 54 61 BRCA TCGA-BH-A0EB PRND SNP Missense_Mutation 20 4705538 C T 27 51 BRCA TCGA-BH-A0EB UPF3B SNP Missense_Mutation 23 118968924 C T 29 81 BRCA TCGA-BH-A0EB MOSPD2 SNP Silent 23 14910870 T A 59 61 BRCA TCGA-BH-A0EB PHKA2 SNP Silent 23 18943843 G T 41 47 BRCA TCGA-BH-A0EB XK SNP Missense_Mutation 23 37553705 C T 23 56 BRCA TCGA-BH-A0EB FAM123B SNP Missense_Mutation 23 63412178 T G 58 84 BRCA TCGA-BH-A0EB GHRL SNP Missense_Mutation 3 10331484 C T 24 46 BRCA TCGA-BH-A0EB PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A0EB CNTN4 SNP Splice_site 3 3085276 C T 25 100 BRCA TCGA-BH-A0EB PRDM8 SNP Missense_Mutation 4 81124648 C G 27 66 BRCA TCGA-BH-A0EB FSTL4 SNP Missense_Mutation 5 132535364 T G 59 73 BRCA TCGA-BH-A0EB MLLT4 SNP Nonsense_Mutation 6 168312082 C G 17 69 BRCA TCGA-BH-A0EB C6orf141 SNP Missense_Mutation 6 49519103 G C 33 60 BRCA TCGA-BH-A0EB IMPG1 SNP Missense_Mutation 6 76751758 C T 17 50 BRCA TCGA-BH-A0EB ZSCAN21 SNP Missense_Mutation 7 99654841 G A 48 79 BRCA TCGA-BH-A0EB C8orf4 SNP Silent 8 40011156 C T 23 12 BRCA TCGA-BH-A0EB ANK1 SNP Missense_Mutation 8 41591581 A T 2 49 BRCA TCGA-BH-A0EB ZFHX4 SNP Missense_Mutation 8 77768353 C T 31 100 BRCA TCGA-BH-A0EB PAPPA SNP Missense_Mutation 9 118950059 C T 23 100 BRCA TCGA-BH-A0EB NUP214 SNP Missense_Mutation 9 134003062 A G 4 74 BRCA TCGA-BH-A0EB TOPORS SNP Silent 9 32541997 G T 35 58 BRCA TCGA-BH-A0EE RBM15 SNP Missense_Mutation 1 110884723 A G 7 91 BRCA TCGA-BH-A0EE MTOR SNP Missense_Mutation 1 11204742 C G 31 98 BRCA TCGA-BH-A0EE PTGFRN SNP Missense_Mutation 1 117527304 G C 45 58 BRCA TCGA-BH-A0EE GPA33 SNP Silent 1 167024317 G A 37 43 BRCA TCGA-BH-A0EE ARID1A SNP Missense_Mutation 1 27089586 C T 22 83 BRCA TCGA-BH-A0EE NPHP4 SNP Missense_Mutation 1 5969237 G A 39 48 BRCA TCGA-BH-A0EE SNX7 SNP Missense_Mutation 1 99164273 G A 45 97 BRCA TCGA-BH-A0EE SMC3 SNP Missense_Mutation 10 112340713 G A 33 98 BRCA TCGA-BH-A0EE KIF5B SNP Missense_Mutation 10 32326302 C T 29 100 BRCA TCGA-BH-A0EE PARG SNP Silent 10 51087829 C T 27 47 BRCA TCGA-BH-A0EE GLUD1 SNP Silent 10 88820732 A G 7 52 BRCA TCGA-BH-A0EE TLL2 SNP Missense_Mutation 10 98165021 C T 23 98 BRCA TCGA-BH-A0EE ARCN1 DEL Frame_Shift_Del 11 118471344 C - 18 99 BRCA TCGA-BH-A0EE ARHGEF12 SNP Silent 11 120347958 A T 8 39 BRCA TCGA-BH-A0EE FOXRED1 SNP Silent 11 126147521 G T 45 59 BRCA TCGA-BH-A0EE KLC2 SNP Splice_Site 11 66032708 T G 59 86 BRCA TCGA-BH-A0EE LRTOMT SNP Missense_Mutation 11 71804648 T A 50 51 BRCA TCGA-BH-A0EE LOC341378 SNP Missense_Mutation 12 106565213 G C 45 66 BRCA TCGA-BH-A0EE SBNO1 SNP Silent 12 123789180 C A 30 62 BRCA TCGA-BH-A0EE GRIN2B SNP Missense_Mutation 12 13722841 C A 26 100 BRCA TCGA-BH-A0EE IPO8 SNP Missense_Mutation 12 30814170 C G 29 83 BRCA TCGA-BH-A0EE IPO8 SNP Missense_Mutation 12 30815380 C T 30 97 BRCA TCGA-BH-A0EE IPO8 SNP Missense_Mutation 12 30819121 C G 32 57 BRCA TCGA-BH-A0EE SLC38A4 SNP Silent 12 47173627 G T 46 55 BRCA TCGA-BH-A0EE CCT2 SNP Missense_Mutation 12 69981336 G C 45 97 BRCA TCGA-BH-A0EE GALNT4 DEL Frame_Shift_Del 12 89917958 CTCATACATTCTTTTATCCTCTATGTGT - 20 71 BRCA TCGA-BH-A0EE MARK3 SNP Missense_Mutation 14 103969315 T G 50 32 BRCA TCGA-BH-A0EE IRF9 SNP Missense_Mutation 14 24631474 C A 30 96 BRCA TCGA-BH-A0EE EML5 SNP Missense_Mutation 14 89178714 C T 31 95 BRCA TCGA-BH-A0EE CATSPERB SNP Missense_Mutation 14 92105498 C T 27 46 BRCA TCGA-BH-A0EE GRAMD2 SNP Missense_Mutation 15 72455727 G A 39 63 BRCA TCGA-BH-A0EE CNOT1 SNP Missense_Mutation 16 58577381 A C 10 42 BRCA TCGA-BH-A0EE GAS8 SNP Missense_Mutation 16 90097863 G A 41 100 BRCA TCGA-BH-A0EE COX10 SNP Splice_site 17 14110529 G T 45 57 BRCA TCGA-BH-A0EE RGS9 SNP Missense_Mutation 17 63221447 G A 42 69 BRCA TCGA-BH-A0EE FN3KRP SNP Missense_Mutation 17 80676816 T C 61 92 BRCA TCGA-BH-A0EE NOL4 SNP Missense_Mutation 18 31599298 C G 32 74 BRCA TCGA-BH-A0EE PHLPP1 SNP Missense_Mutation 18 60642691 G A 45 100 BRCA TCGA-BH-A0EE RASAL3 SNP Missense_Mutation 19 15565183 C T 29 77 BRCA TCGA-BH-A0EE DOT1L SNP Missense_Mutation 19 2202727 G A 47 91 BRCA TCGA-BH-A0EE MAP3K10 SNP Missense_Mutation 19 40711051 G A 39 60 BRCA TCGA-BH-A0EE NLRP2 SNP Splice_Site 19 55501561 G A 40 64 BRCA TCGA-BH-A0EE TTC21B SNP Missense_Mutation 2 166771856 G T 33 72 BRCA TCGA-BH-A0EE ERBB4 SNP Missense_Mutation 2 212652791 G C 35 81 BRCA TCGA-BH-A0EE CUL3 SNP Missense_Mutation 2 225368461 C T 29 100 BRCA TCGA-BH-A0EE LHCGR SNP Missense_Mutation 2 48982717 C T 29 71 BRCA TCGA-BH-A0EE CDC25B SNP Missense_Mutation 20 3782704 G A 39 52 BRCA TCGA-BH-A0EE DSCR6 SNP Missense_Mutation 21 38390475 T G 54 47 BRCA TCGA-BH-A0EE UPB1 SNP Missense_Mutation 22 24898389 G A 40 44 BRCA TCGA-BH-A0EE ZCCHC12 SNP Missense_Mutation 23 117959442 G A 45 65 BRCA TCGA-BH-A0EE CUL4B SNP Nonsense_Mutation 23 119679331 G T 40 46 BRCA TCGA-BH-A0EE CNKSR2 SNP Nonsense_Mutation 23 21458841 C G 29 92 BRCA TCGA-BH-A0EE PCYT1B SNP Missense_Mutation 23 24580504 G A 45 71 BRCA TCGA-BH-A0EE HEPH SNP Missense_Mutation 23 65408292 G T 42 93 BRCA TCGA-BH-A0EE EDA SNP Missense_Mutation 23 68836169 T G 59 49 BRCA TCGA-BH-A0EE CXorf26 SNP Missense_Mutation 23 75397565 G A 41 44 BRCA TCGA-BH-A0EE RPS6KA6 SNP Missense_Mutation 23 83361977 T C 49 48 BRCA TCGA-BH-A0EE ATG7 SNP Missense_Mutation 3 11596291 G A 41 93 BRCA TCGA-BH-A0EE ADCY5 SNP Missense_Mutation 3 123166519 C T 27 60 BRCA TCGA-BH-A0EE ASTE1 SNP Missense_Mutation 3 130743358 G T 45 65 BRCA TCGA-BH-A0EE HPS3 SNP Missense_Mutation 3 148871407 G A 33 94 BRCA TCGA-BH-A0EE PIK3CA SNP Splice_site 3 178942489 C T 28 84 BRCA TCGA-BH-A0EE TWF2 SNP Missense_Mutation 3 52265976 G A 37 100 BRCA TCGA-BH-A0EE CACNA2D3 SNP Missense_Mutation 3 54603876 G A 37 100 BRCA TCGA-BH-A0EE ELF2 SNP Missense_Mutation 4 139980483 G C 36 76 BRCA TCGA-BH-A0EE MRFAP1 SNP Missense_Mutation 4 6642662 G A 37 51 BRCA TCGA-BH-A0EE KIAA0232 SNP Missense_Mutation 4 6865866 C G 30 69 BRCA TCGA-BH-A0EE SEMA6A SNP Silent 5 115782654 A G 16 56 BRCA TCGA-BH-A0EE PPP2R2B SNP Silent 5 145969747 G A 37 50 BRCA TCGA-BH-A0EE ERGIC1 INS Frame_Shift_Ins 5 172359501 - CT 5 68 BRCA TCGA-BH-A0EE ERGIC1 SNP Missense_Mutation 5 172359502 A T 3 73 BRCA TCGA-BH-A0EE PIK3R1 DEL In_Frame_Del 5 67591104 TTAAACCAGACC - 52 90 BRCA TCGA-BH-A0EE VCAN SNP Missense_Mutation 5 82837218 T C 51 52 BRCA TCGA-BH-A0EE EPHA7 SNP Missense_Mutation 6 93969111 C G 32 100 BRCA TCGA-BH-A0EE DOCK4 SNP Missense_Mutation 7 111387340 C T 19 76 BRCA TCGA-BH-A0EE KCND2 SNP Silent 7 119915571 C T 30 65 BRCA TCGA-BH-A0EE GRID2IP SNP Silent 7 6541514 C T 29 56 BRCA TCGA-BH-A0EE SEMA3C SNP Missense_Mutation 7 80434993 G A 38 99 BRCA TCGA-BH-A0EE ZNF3 SNP Missense_Mutation 7 99662422 C T 29 50 BRCA TCGA-BH-A0EE WDR67 SNP Missense_Mutation 8 124141389 G A 40 64 BRCA TCGA-BH-A0EE OR13F1 SNP Missense_Mutation 9 107267045 C T 32 51 BRCA TCGA-BH-A0EI ZNF496 SNP Missense_Mutation 1 247473058 G A 40 55 BRCA TCGA-BH-A0EI SF3B2 SNP Silent 11 65819873 C T 23 34 BRCA TCGA-BH-A0EI ZNF143 SNP Silent 11 9494303 A G 2 45 BRCA TCGA-BH-A0EI SCFD1 SNP Missense_Mutation 14 31118737 C T 28 95 BRCA TCGA-BH-A0EI SNAPC1 SNP Missense_Mutation 14 62229257 G A 37 98 BRCA TCGA-BH-A0EI SERPINA9 SNP Silent 14 94933670 T A 51 41 BRCA TCGA-BH-A0EI SLC9A3R2 SNP Missense_Mutation 16 2086421 C T 23 78 BRCA TCGA-BH-A0EI MAP2K4 SNP Missense_Mutation 17 12011150 A G 12 90 BRCA TCGA-BH-A0EI FLII SNP Missense_Mutation 17 18157896 G A 39 87 BRCA TCGA-BH-A0EI SIGLEC15 SNP Missense_Mutation 18 43422104 G T 45 57 BRCA TCGA-BH-A0EI ATRN SNP Missense_Mutation 20 3559378 G C 48 100 BRCA TCGA-BH-A0EI PLCG1 SNP Missense_Mutation 20 39802876 G A 38 83 BRCA TCGA-BH-A0EI MAGEE2 SNP Missense_Mutation 23 75004148 G A 35 55 BRCA TCGA-BH-A0EI KLHL4 SNP Missense_Mutation 23 86887332 G A 35 96 BRCA TCGA-BH-A0EI GPR149 SNP Missense_Mutation 3 154055726 C T 19 100 BRCA TCGA-BH-A0EI DSPP INS Frame_Shift_Ins 4 88533705 - GGAAAGAA 47 70 BRCA TCGA-BH-A0EI LINGO2 SNP Missense_Mutation 9 27950338 C T 27 89 BRCA TCGA-BH-A0GY AGL DEL Frame_Shift_Del 1 100376361 A - 9 92 BRCA TCGA-BH-A0GY AGMAT SNP Missense_Mutation 1 15905362 G A 39 48 BRCA TCGA-BH-A0GY EIF2C1 SNP Silent 1 36358236 G A 33 88 BRCA TCGA-BH-A0GY IL23R SNP Missense_Mutation 1 67648572 A C 5 50 BRCA TCGA-BH-A0GY LRRC8D SNP Missense_Mutation 1 90400639 G A 38 89 BRCA TCGA-BH-A0GY HPS6 SNP Missense_Mutation 10 103826282 G T 33 73 BRCA TCGA-BH-A0GY KCNA1 SNP Missense_Mutation 12 5021358 G A 37 98 BRCA TCGA-BH-A0GY ALG11 SNP Silent 13 52586563 C T 23 39 BRCA TCGA-BH-A0GY ZNF646 SNP Missense_Mutation 16 31090899 C T 30 61 BRCA TCGA-BH-A0GY GPT2 SNP Missense_Mutation 16 46960909 G A 39 99 BRCA TCGA-BH-A0GY ABAT SNP Missense_Mutation 16 8829606 A G 8 49 BRCA TCGA-BH-A0GY MAP2K4 SNP Missense_Mutation 17 12028665 G T 48 98 BRCA TCGA-BH-A0GY TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-BH-A0GY DNMT1 SNP Missense_Mutation 19 10249146 C G 30 99 BRCA TCGA-BH-A0GY CARM1 DEL Frame_Shift_Del 19 11024609 G - 47 61 BRCA TCGA-BH-A0GY LPHN1 DEL Frame_Shift_Del 19 14262349 A - 5 82 BRCA TCGA-BH-A0GY DPY19L3 SNP Missense_Mutation 19 32949349 A G 16 85 BRCA TCGA-BH-A0GY ARHGAP35 SNP Nonsense_Mutation 19 47424158 C G 19 47 BRCA TCGA-BH-A0GY SLC27A5 INS Frame_Shift_Ins 19 59022779 - C 9 50 BRCA TCGA-BH-A0GY NEB DEL Frame_Shift_Del 2 152362016 CT - 24 65 BRCA TCGA-BH-A0GY TTN SNP Missense_Mutation 2 179639817 C G 18 100 BRCA TCGA-BH-A0GY FBXO41 DEL Frame_Shift_Del 2 73491166 C - 26 76 BRCA TCGA-BH-A0GY TRPC4AP DEL In_Frame_Del 20 33598008 GCT - 34 98 BRCA TCGA-BH-A0GY MAGEC2 SNP Missense_Mutation 23 141291740 C T 19 35 BRCA TCGA-BH-A0GY PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A0GY MAML3 SNP Missense_Mutation 4 140811230 G A 42 70 BRCA TCGA-BH-A0GY USP38 SNP Missense_Mutation 4 144116875 T G 63 92 BRCA TCGA-BH-A0GY RELL1 SNP Silent 4 37640083 C A 17 53 BRCA TCGA-BH-A0GY PCDHGA2 SNP Silent 5 140720425 G A 38 48 BRCA TCGA-BH-A0GY SLC1A3 SNP Missense_Mutation 5 36679791 G T 44 72 BRCA TCGA-BH-A0GY VWA7 SNP Missense_Mutation 6 31740805 C T 27 59 BRCA TCGA-BH-A0GY ARMC12 SNP Silent 6 35716413 C T 19 34 BRCA TCGA-BH-A0GY POU3F2 SNP Missense_Mutation 6 99284014 C G 26 80 BRCA TCGA-BH-A0GY ABCA13 SNP Missense_Mutation 7 48284232 T C 55 55 BRCA TCGA-BH-A0GZ NPR1 SNP Missense_Mutation 1 153662393 C T 27 61 BRCA TCGA-BH-A0GZ USF1 SNP Missense_Mutation 1 161011928 G C 35 91 BRCA TCGA-BH-A0GZ GORAB SNP Missense_Mutation 1 170508668 C A 30 66 BRCA TCGA-BH-A0GZ CACNA1S SNP Missense_Mutation 1 201030559 C T 19 49 BRCA TCGA-BH-A0GZ DNMBP SNP Missense_Mutation 10 101728874 C T 31 99 BRCA TCGA-BH-A0GZ PTEN DEL Frame_Shift_Del 10 89692748 TGAGGTTATCTTTTTACCACAGTTGCACAATATCCTTT - 55 64 BRCA TCGA-BH-A0GZ NADSYN1 SNP Missense_Mutation 11 71164404 G A 42 90 BRCA TCGA-BH-A0GZ C3AR1 SNP Missense_Mutation 12 8212541 G A 45 60 BRCA TCGA-BH-A0GZ COL4A1 SNP Silent 13 110845223 G A 40 51 BRCA TCGA-BH-A0GZ ZFYVE26 SNP Splice_Site 14 68241732 C G 18 85 BRCA TCGA-BH-A0GZ GALNTL1 SNP Missense_Mutation 14 69791471 A G 4 91 BRCA TCGA-BH-A0GZ YLPM1 SNP Nonsense_Mutation 14 75247171 C T 25 79 BRCA TCGA-BH-A0GZ CYFIP1 SNP Missense_Mutation 15 22990097 G T 39 85 BRCA TCGA-BH-A0GZ FBN1 SNP Missense_Mutation 15 48757774 C T 20 71 BRCA TCGA-BH-A0GZ PDE8A SNP Missense_Mutation 15 85659299 A T 11 60 BRCA TCGA-BH-A0GZ ZNF688 SNP Missense_Mutation 16 30581301 C G 31 60 BRCA TCGA-BH-A0GZ ZNF276 SNP Silent 16 89789201 G A 43 49 BRCA TCGA-BH-A0GZ PRPF8 SNP Missense_Mutation 17 1564332 G A 48 100 BRCA TCGA-BH-A0GZ TADA2A SNP Silent 17 35837018 G A 33 80 BRCA TCGA-BH-A0GZ KRTAP1-1 SNP Missense_Mutation 17 39197306 C A 19 73 BRCA TCGA-BH-A0GZ GPR42 SNP Silent 19 35862846 C A 30 46 BRCA TCGA-BH-A0GZ SBSN SNP Silent 19 36017756 C T 23 48 BRCA TCGA-BH-A0GZ TMEM87B SNP Missense_Mutation 2 112854701 T A 61 47 BRCA TCGA-BH-A0GZ NEB SNP Missense_Mutation 2 152432783 G T 42 100 BRCA TCGA-BH-A0GZ PPIG SNP Silent 2 170493412 A G 4 55 BRCA TCGA-BH-A0GZ SLC40A1 SNP Silent 2 190430090 A G 4 63 BRCA TCGA-BH-A0GZ SP100 SNP Missense_Mutation 2 231307660 C T 19 36 BRCA TCGA-BH-A0GZ TRMT61B DEL Frame_Shift_Del 2 29092602 T - 52 57 BRCA TCGA-BH-A0GZ FOXN2 SNP Missense_Mutation 2 48600495 A C 15 54 BRCA TCGA-BH-A0GZ CEP68 SNP Missense_Mutation 2 65299971 G T 39 52 BRCA TCGA-BH-A0GZ CPXM1 SNP Missense_Mutation 20 2776476 G A 35 61 BRCA TCGA-BH-A0GZ ARMCX2 SNP Missense_Mutation 23 100912411 G C 34 64 BRCA TCGA-BH-A0GZ SELT SNP Missense_Mutation 3 150340928 G T 34 82 BRCA TCGA-BH-A0GZ SETD2 SNP Missense_Mutation 3 47142959 G C 41 52 BRCA TCGA-BH-A0GZ FAM193A SNP Missense_Mutation 4 2695544 C T 24 67 BRCA TCGA-BH-A0GZ TAS2R16 SNP Missense_Mutation 7 122634847 G A 35 62 BRCA TCGA-BH-A0GZ RB1CC1 SNP Missense_Mutation 8 53543057 C T 24 83 BRCA TCGA-BH-A0H0 FAM131C SNP Missense_Mutation 1 16386385 G A 38 66 BRCA TCGA-BH-A0H0 MST1P9 SNP Silent 1 17083778 C T 27 54 BRCA TCGA-BH-A0H0 CALML6 SNP Silent 1 1848228 A G 13 50 BRCA TCGA-BH-A0H0 OR6C1 SNP Silent 12 55714623 G A 47 57 BRCA TCGA-BH-A0H0 RNASE3 SNP Silent 14 21359857 A G 2 44 BRCA TCGA-BH-A0H0 C16orf45 SNP Missense_Mutation 16 15609228 C A 25 61 BRCA TCGA-BH-A0H0 PCMTD2 SNP Missense_Mutation 20 62896720 G A 45 86 BRCA TCGA-BH-A0H0 NIPSNAP1 SNP Nonsense_Mutation 22 29956799 G T 44 77 BRCA TCGA-BH-A0H0 XPNPEP2 SNP Missense_Mutation 23 128887190 A G 2 64 BRCA TCGA-BH-A0H0 DCAF8L2 SNP Missense_Mutation 23 27765025 G A 33 54 BRCA TCGA-BH-A0H0 PPM1L SNP Missense_Mutation 3 160783305 A C 12 87 BRCA TCGA-BH-A0H0 CADPS SNP Silent 3 62423869 C G 21 53 BRCA TCGA-BH-A0H0 PROK2 SNP Splice_Site 3 71821981 T C 53 85 BRCA TCGA-BH-A0H0 ARPC4-TTLL3 SNP Missense_Mutation 3 9859333 G T 44 93 BRCA TCGA-BH-A0H0 TMEM155 SNP Missense_Mutation 4 122681612 C T 27 40 BRCA TCGA-BH-A0H0 SORCS2 SNP Silent 4 7714487 C T 23 28 BRCA TCGA-BH-A0H0 PCDHA13 SNP Silent 5 140263650 C T 23 44 BRCA TCGA-BH-A0H0 ZNF354B SNP Missense_Mutation 5 178310408 A C 4 69 BRCA TCGA-BH-A0H0 RICTOR SNP Silent 5 38958580 G A 43 45 BRCA TCGA-BH-A0H0 AHRR SNP Missense_Mutation 5 434581 C G 26 57 BRCA TCGA-BH-A0H0 EZR DEL Frame_Shift_Del 6 159192434 A - 5 48 BRCA TCGA-BH-A0H0 OR6V1 SNP Missense_Mutation 7 142749782 C A 17 54 BRCA TCGA-BH-A0H0 BMPER SNP Missense_Mutation 7 34192803 G T 46 99 BRCA TCGA-BH-A0H0 AOAH SNP Silent 7 36552857 C T 28 55 BRCA TCGA-BH-A0H0 TMEM71 SNP Missense_Mutation 8 133764098 C T 31 69 BRCA TCGA-BH-A0H0 OR1N1 SNP Silent 9 125289198 G A 42 52 BRCA TCGA-BH-A0H0 S1PR3 SNP Missense_Mutation 9 91617190 G C 34 58 BRCA TCGA-BH-A0H3 ATP1B1 INS Splice_site 1 169094123 - T 12 54 BRCA TCGA-BH-A0H3 GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-BH-A0H3 MUC6 DEL Frame_Shift_Del 11 1015877 AGGG - 7 25 BRCA TCGA-BH-A0H3 NUP160 SNP Missense_Mutation 11 47804690 C T 17 97 BRCA TCGA-BH-A0H3 PPP1R13B SNP Missense_Mutation 14 104206651 G A 38 100 BRCA TCGA-BH-A0H3 DNAAF1 SNP Silent 16 84203706 G A 40 50 BRCA TCGA-BH-A0H3 NCOR1 SNP Nonsense_Mutation 17 16012217 T A 64 69 BRCA TCGA-BH-A0H3 PDE11A SNP Missense_Mutation 2 178936669 G A 43 93 BRCA TCGA-BH-A0H3 NGEF SNP Missense_Mutation 2 233759485 C T 19 86 BRCA TCGA-BH-A0H3 DDX17 SNP Missense_Mutation 22 38890089 G T 48 98 BRCA TCGA-BH-A0H3 PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA TCGA-BH-A0H3 PABPC4L SNP Silent 4 135121899 C T 29 43 BRCA TCGA-BH-A0H3 BRPF3 SNP Missense_Mutation 6 36181879 A G 4 53 BRCA TCGA-BH-A0H3 FZD3 SNP Missense_Mutation 8 28385071 A G 4 90 BRCA TCGA-BH-A0H3 TEX15 SNP Silent 8 30705430 C T 30 59 BRCA TCGA-BH-A0H5 CEP104 SNP Silent 1 3732014 C T 31 44 BRCA TCGA-BH-A0H5 PTEN SNP Missense_Mutation 10 89692905 G C 37 96 BRCA TCGA-BH-A0H5 STARD9 SNP Missense_Mutation 15 42984625 G A 45 63 BRCA TCGA-BH-A0H5 TBX4 SNP Missense_Mutation 17 59557513 C T 29 84 BRCA TCGA-BH-A0H5 PITPNC1 SNP Missense_Mutation 17 65665709 C T 30 100 BRCA TCGA-BH-A0H5 SHARPIN SNP Silent 8 145154289 G A 45 54 BRCA TCGA-BH-A0H6 FAM212B SNP Silent 1 112270004 G A 40 53 BRCA TCGA-BH-A0H6 GBP6 SNP Missense_Mutation 1 89843685 G T 41 72 BRCA TCGA-BH-A0H6 LMBR1L SNP Splice_site 12 49496159 T A 50 60 BRCA TCGA-BH-A0H6 SACS SNP Splice_Site 13 23930148 T G 55 93 BRCA TCGA-BH-A0H6 NAA60 SNP Missense_Mutation 16 3534810 G A 39 35 BRCA TCGA-BH-A0H6 SEZ6 SNP Missense_Mutation 17 27308950 C T 19 48 BRCA TCGA-BH-A0H6 SMCHD1 SNP Missense_Mutation 18 2700752 C T 30 95 BRCA TCGA-BH-A0H6 ZNF45 SNP Silent 19 44419341 G A 33 59 BRCA TCGA-BH-A0H6 CNTNAP5 SNP Silent 2 125504906 C T 19 37 BRCA TCGA-BH-A0H6 GULP1 SNP Missense_Mutation 2 189405977 T C 52 78 BRCA TCGA-BH-A0H6 INO80B SNP Silent 2 74684835 G C 38 37 BRCA TCGA-BH-A0H6 C20orf132 SNP Missense_Mutation 20 35772133 A G 9 56 BRCA TCGA-BH-A0H6 CHGB SNP Nonsense_Mutation 20 5903619 C T 19 63 BRCA TCGA-BH-A0H6 ABCG1 SNP Splice_site 21 43693544 T A 51 87 BRCA TCGA-BH-A0H6 EWSR1 DEL Frame_Shift_Del 22 29668221 C - 26 69 BRCA TCGA-BH-A0H6 SCUBE1 SNP Missense_Mutation 22 43603586 C T 27 93 BRCA TCGA-BH-A0H6 ATXN10 SNP Silent 22 46088888 G A 37 23 BRCA TCGA-BH-A0H6 DCAF8L2 SNP Silent 23 27765399 A G 3 53 BRCA TCGA-BH-A0H6 TSPYL2 SNP Missense_Mutation 23 53112279 T G 59 50 BRCA TCGA-BH-A0H6 GAP43 SNP Missense_Mutation 3 115395170 G T 43 51 BRCA TCGA-BH-A0H6 CACNA1D SNP Missense_Mutation 3 53844194 C T 23 76 BRCA TCGA-BH-A0H6 UGT2A1 SNP Missense_Mutation 4 70504971 T A 52 50 BRCA TCGA-BH-A0H6 COMMD10 SNP Missense_Mutation 5 115428339 C T 32 72 BRCA TCGA-BH-A0H6 MAP3K1 DEL Frame_Shift_Del 5 56184070 GTATGGAAGGAGCTGTGAT - 36 66 BRCA TCGA-BH-A0H6 DNAH8 SNP Silent 6 38851106 G A 46 63 BRCA TCGA-BH-A0H6 RUNX1T1 SNP Silent 8 92972572 C T 27 46 BRCA TCGA-BH-A0H7 DYRK3 SNP Missense_Mutation 1 206820860 G T 36 42 BRCA TCGA-BH-A0H7 HOOK1 SNP Missense_Mutation 1 60328544 G A 37 96 BRCA TCGA-BH-A0H7 FRMPD2 SNP Missense_Mutation 10 49381051 G A 40 43 BRCA TCGA-BH-A0H7 ANK3 SNP Silent 10 61842433 T C 63 40 BRCA TCGA-BH-A0H7 MUC5B SNP Missense_Mutation 11 1268585 C T 30 49 BRCA TCGA-BH-A0H7 KCNA4 SNP Missense_Mutation 11 30033717 C T 27 83 BRCA TCGA-BH-A0H7 OR4A15 SNP Missense_Mutation 11 55135676 C A 28 56 BRCA TCGA-BH-A0H7 FAM160A2 SNP Missense_Mutation 11 6239359 T C 58 88 BRCA TCGA-BH-A0H7 MRPS31 SNP Missense_Mutation 13 41333178 C G 29 64 BRCA TCGA-BH-A0H7 LOC220429 SNP Missense_Mutation 13 50467044 G C 38 25 BRCA TCGA-BH-A0H7 METTL9 SNP Missense_Mutation 16 21636383 G C 33 68 BRCA TCGA-BH-A0H7 CCL4L2 SNP Nonsense_Mutation 17 34641454 C T 21 56 BRCA TCGA-BH-A0H7 ZNF536 SNP Silent 19 31038893 G A 38 53 BRCA TCGA-BH-A0H7 CD22 SNP Splice_Site 19 35827245 G A 40 72 BRCA TCGA-BH-A0H7 PXDN SNP Missense_Mutation 2 1652010 G A 38 100 BRCA TCGA-BH-A0H7 SPAG16 SNP Silent 2 214215282 G A 37 53 BRCA TCGA-BH-A0H7 ZNF513 SNP Missense_Mutation 2 27600657 G A 40 73 BRCA TCGA-BH-A0H7 THUMPD2 SNP Missense_Mutation 2 39983082 C T 32 78 BRCA TCGA-BH-A0H7 USP34 SNP Missense_Mutation 2 61417673 T C 51 64 BRCA TCGA-BH-A0H7 SPR SNP Silent 2 73118645 C T 19 53 BRCA TCGA-BH-A0H7 ASXL1 SNP Missense_Mutation 20 31021655 A G 4 75 BRCA TCGA-BH-A0H7 CHD6 SNP Nonsense_Mutation 20 40126068 G A 38 87 BRCA TCGA-BH-A0H7 PI3 SNP Missense_Mutation 20 43804672 G A 38 52 BRCA TCGA-BH-A0H7 CDH26 SNP Missense_Mutation 20 58571003 C G 32 47 BRCA TCGA-BH-A0H7 ANGPT4 SNP Silent 20 865878 C T 27 51 BRCA TCGA-BH-A0H7 CDC45 SNP Missense_Mutation 22 19504407 G A 45 95 BRCA TCGA-BH-A0H7 XPNPEP3 SNP Nonsense_Mutation 22 41265020 C T 17 69 BRCA TCGA-BH-A0H7 HS6ST2 SNP Missense_Mutation 23 131762517 G A 40 65 BRCA TCGA-BH-A0H7 GLRA2 SNP Missense_Mutation 23 14627177 G C 33 99 BRCA TCGA-BH-A0H7 FAM47B SNP Missense_Mutation 23 34962578 G A 47 54 BRCA TCGA-BH-A0H7 IQSEC2 SNP Missense_Mutation 23 53283878 G A 37 95 BRCA TCGA-BH-A0H7 SKIL SNP Missense_Mutation 3 170078760 A G 4 68 BRCA TCGA-BH-A0H7 TRAIP SNP Silent 3 49878478 C A 30 57 BRCA TCGA-BH-A0H7 SEC24B SNP Missense_Mutation 4 110394171 T G 64 51 BRCA TCGA-BH-A0H7 CHSY3 SNP Missense_Mutation 5 129520729 G A 45 84 BRCA TCGA-BH-A0H7 GRXCR2 SNP Missense_Mutation 5 145239466 G A 41 56 BRCA TCGA-BH-A0H7 EMB SNP Missense_Mutation 5 49707043 T C 49 52 BRCA TCGA-BH-A0H7 HOMER1 SNP Missense_Mutation 5 78742884 G C 44 87 BRCA TCGA-BH-A0H7 GPR116 SNP Silent 6 46830787 C T 23 45 BRCA TCGA-BH-A0H7 MOGAT3 SNP Missense_Mutation 7 100839208 C T 27 47 BRCA TCGA-BH-A0H7 DGKB SNP Splice_Site 7 14216525 C T 24 97 BRCA TCGA-BH-A0H7 GIMAP6 SNP Missense_Mutation 7 150324841 G A 42 46 BRCA TCGA-BH-A0H7 MIOS SNP Silent 7 7636043 A T 12 57 BRCA TCGA-BH-A0H7 FGL2 SNP Missense_Mutation 7 76826243 C G 29 83 BRCA TCGA-BH-A0H7 CCDC146 SNP Missense_Mutation 7 76871096 G C 45 85 BRCA TCGA-BH-A0H7 C8orf34 SNP Missense_Mutation 8 69434116 C T 22 91 BRCA TCGA-BH-A0H7 PLEKHF2 SNP Silent 8 96166776 T C 55 51 BRCA TCGA-BH-A0H7 LHX6 SNP Silent 9 124971974 C T 25 71 BRCA TCGA-BH-A0H7 PRRC2B SNP Silent 9 134312031 G A 38 96 BRCA TCGA-BH-A0H7 CA9 SNP Missense_Mutation 9 35676375 G T 38 62 BRCA TCGA-BH-A0H7 FAM75A3 SNP Missense_Mutation 9 40705542 C T 27 42 BRCA TCGA-BH-A0H9 ZNF124 SNP Silent 1 247320267 A G 4 62 BRCA TCGA-BH-A0H9 CLCA2 SNP Silent 1 86919248 T G 56 48 BRCA TCGA-BH-A0H9 OBFC1 SNP Missense_Mutation 10 105664860 T C 54 56 BRCA TCGA-BH-A0H9 ABI1 SNP Missense_Mutation 10 27040638 G A 43 99 BRCA TCGA-BH-A0H9 USP54 SNP Silent 10 75277121 A C 11 54 BRCA TCGA-BH-A0H9 NOC3L SNP Missense_Mutation 10 96121599 G A 37 72 BRCA TCGA-BH-A0H9 DGKA SNP Missense_Mutation 12 56347471 C G 29 60 BRCA TCGA-BH-A0H9 KL SNP Missense_Mutation 13 33634928 A G 14 79 BRCA TCGA-BH-A0H9 SERPINA9 SNP Missense_Mutation 14 94933642 G C 46 51 BRCA TCGA-BH-A0H9 CTRL SNP Splice_site 16 67964902 C T 30 52 BRCA TCGA-BH-A0H9 NF1 SNP Missense_Mutation 17 29685563 A G 4 88 BRCA TCGA-BH-A0H9 CA11 DEL Frame_Shift_Del 19 49147687 CTCTC - 32 57 BRCA TCGA-BH-A0H9 IL18RAP SNP Missense_Mutation 2 103039784 G A 37 49 BRCA TCGA-BH-A0H9 COBLL1 SNP Missense_Mutation 2 165551456 C T 29 51 BRCA TCGA-BH-A0H9 TTN SNP Missense_Mutation 2 179604078 A G 12 60 BRCA TCGA-BH-A0H9 BMPR2 SNP Silent 2 203417447 G A 44 51 BRCA TCGA-BH-A0H9 TOX2 SNP Silent 20 42680113 G A 38 50 BRCA TCGA-BH-A0H9 ARFGEF2 SNP Missense_Mutation 20 47601333 G A 45 87 BRCA TCGA-BH-A0H9 TCFL5 SNP Silent 20 61488983 C T 27 62 BRCA TCGA-BH-A0H9 NKAIN4 SNP Missense_Mutation 20 61881347 G C 45 51 BRCA TCGA-BH-A0H9 MAGEB4 SNP Missense_Mutation 23 30260727 G A 41 56 BRCA TCGA-BH-A0H9 DMD SNP Missense_Mutation 23 31950337 C G 32 85 BRCA TCGA-BH-A0H9 MAOA INS Frame_Shift_Ins 23 43603045 - T 12 58 BRCA TCGA-BH-A0H9 ELK1 SNP Missense_Mutation 23 47500696 G A 40 78 BRCA TCGA-BH-A0H9 PQBP1 SNP Missense_Mutation 23 48758524 C T 26 66 BRCA TCGA-BH-A0H9 KIAA2022 SNP Missense_Mutation 23 73961666 G A 42 67 BRCA TCGA-BH-A0H9 ATP7A SNP Missense_Mutation 23 77244986 T C 50 90 BRCA TCGA-BH-A0H9 PLCL2 SNP Nonsense_Mutation 3 17052713 C A 25 47 BRCA TCGA-BH-A0H9 PIK3CA SNP Missense_Mutation 3 178951964 G C 47 98 BRCA TCGA-BH-A0H9 LMOD3 SNP Nonsense_Mutation 3 69168311 G A 46 100 BRCA TCGA-BH-A0H9 ACSL1 SNP Silent 4 185678828 C T 29 69 BRCA TCGA-BH-A0H9 HNRPDL SNP Silent 4 83348622 C T 17 48 BRCA TCGA-BH-A0H9 PCDHGA3 SNP Silent 5 140724038 G A 39 42 BRCA TCGA-BH-A0H9 ODZ2 SNP Missense_Mutation 5 167671462 G A 37 98 BRCA TCGA-BH-A0H9 HIVEP2 SNP Missense_Mutation 6 143093972 C A 22 59 BRCA TCGA-BH-A0H9 BTN3A1 SNP Missense_Mutation 6 26406257 G C 36 60 BRCA TCGA-BH-A0H9 COL11A2 DEL Frame_Shift_Del 6 33135615 C - 27 49 BRCA TCGA-BH-A0H9 PPP1R9A DEL Frame_Shift_Del 7 94540216 GAGGTGTT - 37 44 BRCA TCGA-BH-A0H9 RIMS2 SNP Missense_Mutation 8 104709351 G A 44 87 BRCA TCGA-BH-A0H9 MCM4 SNP Missense_Mutation 8 48887308 G A 45 98 BRCA TCGA-BH-A0H9 FABP9 SNP Missense_Mutation 8 82371416 T C 58 76 BRCA TCGA-BH-A0H9 MELK SNP Silent 9 36643017 C T 27 51 BRCA TCGA-BH-A0H9 ALDH1A1 SNP Missense_Mutation 9 75533714 C A 25 87 BRCA TCGA-BH-A0H9 PRUNE2 SNP Missense_Mutation 9 79259823 G T 41 51 BRCA TCGA-BH-A0HA DDX20 SNP Missense_Mutation 1 112305336 T C 60 89 BRCA TCGA-BH-A0HA KRTCAP2 SNP Silent 1 155145235 A G 10 55 BRCA TCGA-BH-A0HA SLC25A44 SNP Missense_Mutation 1 156180034 G A 45 93 BRCA TCGA-BH-A0HA KCNJ10 SNP Missense_Mutation 1 160012073 C T 19 64 BRCA TCGA-BH-A0HA CFH SNP Silent 1 196695952 C T 22 49 BRCA TCGA-BH-A0HA DENND1B SNP Missense_Mutation 1 197480015 C T 31 90 BRCA TCGA-BH-A0HA PKP1 DNP Missense_Mutation 1 201282534 CG TA 23 68 BRCA TCGA-BH-A0HA PRELP SNP Silent 1 203452615 G A 38 34 BRCA TCGA-BH-A0HA BROX SNP Silent 1 222897497 A G 2 58 BRCA TCGA-BH-A0HA MORN1 SNP Missense_Mutation 1 2319730 C T 19 38 BRCA TCGA-BH-A0HA NID1 SNP Missense_Mutation 1 236212189 G A 38 69 BRCA TCGA-BH-A0HA OR2W3 SNP Silent 1 248058990 G A 40 41 BRCA TCGA-BH-A0HA ADC SNP Missense_Mutation 1 33562360 G A 42 78 BRCA TCGA-BH-A0HA ZNF362 SNP Missense_Mutation 1 33745989 C T 23 98 BRCA TCGA-BH-A0HA BMP8B SNP Missense_Mutation 1 40228838 A G 13 84 BRCA TCGA-BH-A0HA PTPRF SNP Missense_Mutation 1 44069494 C T 23 59 BRCA TCGA-BH-A0HA CHD5 SNP Splice_site 1 6181297 C T 26 59 BRCA TCGA-BH-A0HA L1TD1 SNP Missense_Mutation 1 62672476 T A 51 61 BRCA TCGA-BH-A0HA NOL9 SNP Silent 1 6610529 G A 36 49 BRCA TCGA-BH-A0HA FAM73A SNP Missense_Mutation 1 78272735 A T 16 43 BRCA TCGA-BH-A0HA ARHGAP29 DEL Frame_Shift_Del 1 94668215 TT - 56 71 BRCA TCGA-BH-A0HA GBF1 SNP Missense_Mutation 10 104122393 A G 15 47 BRCA TCGA-BH-A0HA CCDC147 SNP Missense_Mutation 10 106118199 A G 9 79 BRCA TCGA-BH-A0HA ATRNL1 SNP Missense_Mutation 10 117221463 T C 52 88 BRCA TCGA-BH-A0HA TACC2 SNP Missense_Mutation 10 123844494 G C 45 49 BRCA TCGA-BH-A0HA CPXM2 SNP Silent 10 125521407 G T 35 51 BRCA TCGA-BH-A0HA MAP3K8 SNP Missense_Mutation 10 30747044 G T 35 96 BRCA TCGA-BH-A0HA ARHGAP22 SNP Silent 10 49659122 C T 23 32 BRCA TCGA-BH-A0HA SLC18A3 SNP Missense_Mutation 10 50819070 C T 26 50 BRCA TCGA-BH-A0HA ENSG00000214982 DEL Frame_Shift_Del 10 51631508 T - 58 51 BRCA TCGA-BH-A0HA MCU SNP Missense_Mutation 10 74618991 C T 23 87 BRCA TCGA-BH-A0HA KAT6B SNP Silent 10 76789124 G A 34 50 BRCA TCGA-BH-A0HA HECTD2 SNP Missense_Mutation 10 93247499 G C 33 44 BRCA TCGA-BH-A0HA SORBS1 SNP Silent 10 97170460 G A 46 73 BRCA TCGA-BH-A0HA MUC2 SNP Silent 11 1101943 T C 55 49 BRCA TCGA-BH-A0HA TIRAP SNP Silent 11 126162826 C T 25 62 BRCA TCGA-BH-A0HA PIK3C2A DEL In_Frame_Del 11 17122898 AAC - 1 92 BRCA TCGA-BH-A0HA MRGPRX1 SNP Nonsense_Mutation 11 18955816 C T 18 55 BRCA TCGA-BH-A0HA KIAA1549L SNP Missense_Mutation 11 33640180 G A 39 75 BRCA TCGA-BH-A0HA NAT10 SNP Missense_Mutation 11 34164994 A G 14 89 BRCA TCGA-BH-A0HA LRP4 SNP Missense_Mutation 11 46898298 T C 59 90 BRCA TCGA-BH-A0HA OR5T2 SNP Silent 11 55999765 C T 29 46 BRCA TCGA-BH-A0HA C11orf84 SNP Missense_Mutation 11 63585474 C T 25 64 BRCA TCGA-BH-A0HA SPDYC SNP Missense_Mutation 11 64938932 G A 38 42 BRCA TCGA-BH-A0HA RAD9A DEL In_Frame_Del 11 67163284 GAG - 37 82 BRCA TCGA-BH-A0HA TBC1D10C SNP Silent 11 67171808 C T 25 56 BRCA TCGA-BH-A0HA INTS4 SNP Silent 11 77618841 A G 5 60 BRCA TCGA-BH-A0HA CLEC2A SNP Splice_site 12 10078860 T C 53 59 BRCA TCGA-BH-A0HA PIWIL1 SNP Missense_Mutation 12 130833950 A G 5 92 BRCA TCGA-BH-A0HA POLE SNP Silent 12 133220438 G A 38 41 BRCA TCGA-BH-A0HA SLCO1B1 SNP Missense_Mutation 12 21377736 C T 19 54 BRCA TCGA-BH-A0HA FOXM1 SNP Missense_Mutation 12 2968543 C A 20 58 BRCA TCGA-BH-A0HA KCNH3 SNP Missense_Mutation 12 49934840 G A 40 63 BRCA TCGA-BH-A0HA PCBP2 SNP Missense_Mutation 12 53848642 A G 16 89 BRCA TCGA-BH-A0HA LGR5 SNP Splice_Site 12 71974205 T C 57 77 BRCA TCGA-BH-A0HA NALCN SNP Missense_Mutation 13 101714459 T C 57 90 BRCA TCGA-BH-A0HA ATP12A SNP Silent 13 25272825 C T 19 37 BRCA TCGA-BH-A0HA EDNRB SNP Missense_Mutation 13 78477305 T C 58 68 BRCA TCGA-BH-A0HA RNF113B SNP Missense_Mutation 13 98828674 G A 46 78 BRCA TCGA-BH-A0HA LOC100288131 SNP Missense_Mutation 14 101194837 G A 38 61 BRCA TCGA-BH-A0HA AHNAK2 SNP Silent 14 105418263 C T 19 50 BRCA TCGA-BH-A0HA RAB2B DEL In_Frame_Del 14 21944734 AGG - 7 77 BRCA TCGA-BH-A0HA IL25 SNP Missense_Mutation 14 23844943 T C 54 69 BRCA TCGA-BH-A0HA MTHFD1 SNP Missense_Mutation 14 64891576 C T 26 100 BRCA TCGA-BH-A0HA SLC39A9 SNP Missense_Mutation 14 69908917 G A 40 98 BRCA TCGA-BH-A0HA NEK9 SNP Silent 14 75577041 T C 59 52 BRCA TCGA-BH-A0HA SAMD15 SNP Missense_Mutation 14 77845125 T A 64 47 BRCA TCGA-BH-A0HA TDP1 SNP Silent 14 90429977 A G 11 50 BRCA TCGA-BH-A0HA TM2D3 SNP Missense_Mutation 15 102182699 C A 21 96 BRCA TCGA-BH-A0HA THBS1 SNP Silent 15 39885373 C T 26 49 BRCA TCGA-BH-A0HA MAPKBP1 SNP Silent 15 42110267 C T 19 52 BRCA TCGA-BH-A0HA PPIP5K1 SNP Silent 15 43831723 A G 14 52 BRCA TCGA-BH-A0HA SLC27A2 SNP Missense_Mutation 15 50526110 A G 2 54 BRCA TCGA-BH-A0HA WDR72 SNP Splice_site 15 54025194 C T 24 65 BRCA TCGA-BH-A0HA SLC24A1 INS In_Frame_Ins 15 65918176 - CTG 26 78 BRCA TCGA-BH-A0HA RAB11A SNP Nonsense_Mutation 15 66180167 C T 29 100 BRCA TCGA-BH-A0HA TBC1D21 SNP Missense_Mutation 15 74177124 C T 19 62 BRCA TCGA-BH-A0HA MAN2A2 SNP Silent 15 91453858 C A 29 100 BRCA TCGA-BH-A0HA ABCC1 SNP Missense_Mutation 16 16218677 A G 5 77 BRCA TCGA-BH-A0HA TRAF7 SNP Splice_site 16 2220730 C T 23 59 BRCA TCGA-BH-A0HA SH2B1 SNP Silent 16 28884850 G A 40 64 BRCA TCGA-BH-A0HA KIF22 SNP Missense_Mutation 16 29809769 A G 6 87 BRCA TCGA-BH-A0HA ZNF785 SNP Silent 16 30594700 C T 27 40 BRCA TCGA-BH-A0HA PRSS8 SNP Missense_Mutation 16 31143790 A C 6 74 BRCA TCGA-BH-A0HA VPS4A DEL Frame_Shift_Del 16 69358203 AG - 3 56 BRCA TCGA-BH-A0HA STUB1 DEL In_Frame_Del 16 731505 GAA - 37 55 BRCA TCGA-BH-A0HA GRIN2A SNP Missense_Mutation 16 9858202 G A 37 62 BRCA TCGA-BH-A0HA MAP2K4 SNP Splice_Site 17 12028690 T C 57 90 BRCA TCGA-BH-A0HA FLII SNP Missense_Mutation 17 18149770 G A 40 74 BRCA TCGA-BH-A0HA SUPT6H INS In_Frame_Ins 17 27027201 - AGC 53 61 BRCA TCGA-BH-A0HA RHOT1 SNP Missense_Mutation 17 30521111 A G 9 93 BRCA TCGA-BH-A0HA PIGW SNP Missense_Mutation 17 34893944 C G 17 58 BRCA TCGA-BH-A0HA NR1D1 SNP Missense_Mutation 17 38252334 C T 19 83 BRCA TCGA-BH-A0HA KRTAP4-2 SNP Missense_Mutation 17 39334274 G A 39 68 BRCA TCGA-BH-A0HA QRICH2 SNP Missense_Mutation 17 74278024 C T 23 52 BRCA TCGA-BH-A0HA GPS1 SNP Splice_Site 17 80010320 T C 57 50 BRCA TCGA-BH-A0HA PER1 SNP Silent 17 8048217 G A 40 50 BRCA TCGA-BH-A0HA TBCD SNP Missense_Mutation 17 80895232 G A 38 50 BRCA TCGA-BH-A0HA LAMA3 SNP Splice_Site 18 21419894 G T 44 81 BRCA TCGA-BH-A0HA OSBPL1A SNP Splice_site 18 21759703 G A 38 65 BRCA TCGA-BH-A0HA GALNT1 SNP Silent 18 33234665 C T 24 74 BRCA TCGA-BH-A0HA MBD1 SNP Missense_Mutation 18 47803052 G A 40 77 BRCA TCGA-BH-A0HA CDH20 SNP Missense_Mutation 18 59157855 G T 43 57 BRCA TCGA-BH-A0HA RTTN SNP Missense_Mutation 18 67698148 C A 26 82 BRCA TCGA-BH-A0HA FBXO15 SNP Missense_Mutation 18 71807443 A G 7 71 BRCA TCGA-BH-A0HA ADNP2 SNP Silent 18 77895840 C T 20 59 BRCA TCGA-BH-A0HA CDKN2D SNP Silent 19 10677827 G A 40 48 BRCA TCGA-BH-A0HA GTPBP3 SNP Missense_Mutation 19 17450401 C T 23 66 BRCA TCGA-BH-A0HA PPAP2C SNP Missense_Mutation 19 287568 C T 19 73 BRCA TCGA-BH-A0HA SHD SNP Missense_Mutation 19 4280122 C A 22 89 BRCA TCGA-BH-A0HA MEGF8 DEL In_Frame_Del 19 42841287 TCT - 50 83 BRCA TCGA-BH-A0HA HDGFRP2 INS In_Frame_Ins 19 4493798 - TCC 56 41 BRCA TCGA-BH-A0HA GRWD1 SNP Silent 19 48953639 C T 28 79 BRCA TCGA-BH-A0HA GYS1 SNP Missense_Mutation 19 49490492 C T 27 74 BRCA TCGA-BH-A0HA RPS5 SNP Missense_Mutation 19 58904783 A G 6 84 BRCA TCGA-BH-A0HA TUBB4A SNP Silent 19 6495769 G A 40 54 BRCA TCGA-BH-A0HA ENSG00000186629 SNP Missense_Mutation 19 6986335 C A 24 46 BRCA TCGA-BH-A0HA CAMSAP3 SNP Missense_Mutation 19 7676815 C T 26 90 BRCA TCGA-BH-A0HA R3HDM4 SNP Silent 19 900926 G T 39 32 BRCA TCGA-BH-A0HA ANAPC1 SNP Missense_Mutation 2 112560009 A G 3 73 BRCA TCGA-BH-A0HA FOXD4L1 SNP Missense_Mutation 2 114257228 G A 42 66 BRCA TCGA-BH-A0HA LCT SNP Missense_Mutation 2 136558374 A T 11 72 BRCA TCGA-BH-A0HA TPO SNP Splice_Site 2 1440158 T C 57 73 BRCA TCGA-BH-A0HA SCN3A SNP Missense_Mutation 2 165996102 G A 40 87 BRCA TCGA-BH-A0HA TTN SNP Missense_Mutation 2 179430671 A G 14 93 BRCA TCGA-BH-A0HA MYT1L INS In_Frame_Ins 2 1946770 - TCC 56 50 BRCA TCGA-BH-A0HA DYTN SNP Missense_Mutation 2 207527867 C T 26 50 BRCA TCGA-BH-A0HA PRKD3 SNP Splice_site 2 37507071 T C 60 50 BRCA TCGA-BH-A0HA EPAS1 SNP Nonsense_Mutation 2 46607728 G A 42 96 BRCA TCGA-BH-A0HA NRXN1 SNP Silent 2 50758375 C T 23 63 BRCA TCGA-BH-A0HA LOXL3 SNP Missense_Mutation 2 74761116 A T 10 87 BRCA TCGA-BH-A0HA CPSF3 DEL In_Frame_Del 2 9570133 CTC - 32 72 BRCA TCGA-BH-A0HA ANKRD36 SNP Silent 2 97868069 C T 19 38 BRCA TCGA-BH-A0HA LYG2 SNP Missense_Mutation 2 99858889 C T 32 68 BRCA TCGA-BH-A0HA FLRT3 SNP Missense_Mutation 20 14307596 C T 27 100 BRCA TCGA-BH-A0HA RIN2 SNP Silent 20 19915793 G A 46 57 BRCA TCGA-BH-A0HA NAA20 SNP Splice_site 20 20003100 T C 57 60 BRCA TCGA-BH-A0HA ADNP SNP Silent 20 49508350 G A 40 47 BRCA TCGA-BH-A0HA BIRC7 SNP Missense_Mutation 20 61869314 G A 39 76 BRCA TCGA-BH-A0HA ITGB2 SNP Missense_Mutation 21 46310051 T C 58 75 BRCA TCGA-BH-A0HA MCM3AP SNP Missense_Mutation 21 47663439 C T 27 57 BRCA TCGA-BH-A0HA POTEH SNP Silent 22 16287406 G A 40 40 BRCA TCGA-BH-A0HA TXNRD2 SNP Silent 22 19903309 G A 38 32 BRCA TCGA-BH-A0HA TOP3B SNP Missense_Mutation 22 22326278 C T 31 87 BRCA TCGA-BH-A0HA LIMK2 SNP Missense_Mutation 22 31658675 C T 26 78 BRCA TCGA-BH-A0HA C1QTNF6 SNP Missense_Mutation 22 37578518 A G 2 91 BRCA TCGA-BH-A0HA CACNA1I SNP Splice_site 22 40043828 T C 51 55 BRCA TCGA-BH-A0HA PLXNB2 SNP Silent 22 50727190 G A 40 52 BRCA TCGA-BH-A0HA SBF1 SNP Missense_Mutation 22 50906253 C T 27 74 BRCA TCGA-BH-A0HA LUZP4 SNP Missense_Mutation 23 114536623 A G 2 41 BRCA TCGA-BH-A0HA ODZ1 SNP Silent 23 123657271 C T 27 48 BRCA TCGA-BH-A0HA GPR101 SNP Missense_Mutation 23 136113257 T C 59 57 BRCA TCGA-BH-A0HA FMR1 SNP Missense_Mutation 23 147026442 G A 37 95 BRCA TCGA-BH-A0HA IDS SNP Missense_Mutation 23 148579795 C T 25 93 BRCA TCGA-BH-A0HA GDI1 SNP Splice_site 23 153667353 G A 42 47 BRCA TCGA-BH-A0HA CNKSR2 INS In_Frame_Ins 23 21627677 - GAG 3 55 BRCA TCGA-BH-A0HA ZNF645 SNP Nonsense_Mutation 23 22292144 C T 29 59 BRCA TCGA-BH-A0HA POLA1 SNP Silent 23 24830822 T C 63 49 BRCA TCGA-BH-A0HA MAGEB4 SNP Silent 23 30260720 G A 34 47 BRCA TCGA-BH-A0HA FAM47A SNP Missense_Mutation 23 34148695 A T 12 42 BRCA TCGA-BH-A0HA FAM47A SNP Missense_Mutation 23 34150200 C T 31 57 BRCA TCGA-BH-A0HA KDM6A SNP Missense_Mutation 23 44945128 A G 2 87 BRCA TCGA-BH-A0HA TRO SNP Missense_Mutation 23 54956207 T C 58 41 BRCA TCGA-BH-A0HA FAM123B SNP Missense_Mutation 23 63411278 G A 42 56 BRCA TCGA-BH-A0HA ZC4H2 SNP Missense_Mutation 23 64137672 C T 24 41 BRCA TCGA-BH-A0HA PJA1 SNP Missense_Mutation 23 68382828 G A 37 66 BRCA TCGA-BH-A0HA NLGN3 SNP Missense_Mutation 23 70389300 C A 24 97 BRCA TCGA-BH-A0HA ABCB7 SNP Missense_Mutation 23 74296459 T C 61 85 BRCA TCGA-BH-A0HA SH3BGRL SNP Missense_Mutation 23 80457737 C T 32 73 BRCA TCGA-BH-A0HA IMPG2 DEL In_Frame_Del 3 100992437 TTC - 52 45 BRCA TCGA-BH-A0HA MYH15 SNP Missense_Mutation 3 108129537 T C 55 57 BRCA TCGA-BH-A0HA MYH15 SNP Missense_Mutation 3 108189615 G A 42 58 BRCA TCGA-BH-A0HA ADCY5 SNP Missense_Mutation 3 123010174 C T 23 97 BRCA TCGA-BH-A0HA SMC4 SNP Silent 3 160131390 A G 3 57 BRCA TCGA-BH-A0HA PLD1 SNP Silent 3 171431831 A G 2 55 BRCA TCGA-BH-A0HA PIK3CA DEL In_Frame_Del 3 178916938 GAA - 45 97 BRCA TCGA-BH-A0HA VWA5B2 SNP Silent 3 183954187 C T 22 48 BRCA TCGA-BH-A0HA ATP13A4 SNP Splice_Site 3 193183869 A G 14 75 BRCA TCGA-BH-A0HA MLH1 SNP Nonsense_Mutation 3 37042542 G T 45 96 BRCA TCGA-BH-A0HA WDR6 SNP Missense_Mutation 3 49049490 A G 8 48 BRCA TCGA-BH-A0HA DALRD3 DEL Frame_Shift_Del 3 49053683 GT - 36 93 BRCA TCGA-BH-A0HA BAP1 SNP Missense_Mutation 3 52440905 T C 54 93 BRCA TCGA-BH-A0HA LRTM1 SNP Missense_Mutation 3 54952776 C T 25 56 BRCA TCGA-BH-A0HA FAM208A SNP Missense_Mutation 3 56667416 C T 29 78 BRCA TCGA-BH-A0HA CENPE SNP Missense_Mutation 4 104096015 T C 61 55 BRCA TCGA-BH-A0HA SEC24B SNP Missense_Mutation 4 110442315 A G 16 79 BRCA TCGA-BH-A0HA SEC24D SNP Missense_Mutation 4 119745855 C T 17 53 BRCA TCGA-BH-A0HA CRIPAK SNP Silent 4 1389289 C T 23 51 BRCA TCGA-BH-A0HA MAML3 SNP Silent 4 140640648 T C 56 46 BRCA TCGA-BH-A0HA ADAM29 SNP Missense_Mutation 4 175897313 C T 31 59 BRCA TCGA-BH-A0HA ODZ3 SNP Nonsense_Mutation 4 183714372 C T 31 83 BRCA TCGA-BH-A0HA SLC34A2 SNP Missense_Mutation 4 25675985 C A 29 60 BRCA TCGA-BH-A0HA HGFAC SNP Missense_Mutation 4 3451048 C T 27 49 BRCA TCGA-BH-A0HA SLC30A9 SNP Missense_Mutation 4 42065022 C T 27 100 BRCA TCGA-BH-A0HA POLR2B DEL Frame_Shift_Del 4 57896449 TTGT - 52 50 BRCA TCGA-BH-A0HA PDE6B SNP Missense_Mutation 4 660344 G A 42 79 BRCA TCGA-BH-A0HA TMPRSS11F SNP Missense_Mutation 4 68925078 G A 34 79 BRCA TCGA-BH-A0HA UGT2B4 SNP Silent 4 70350946 C T 32 44 BRCA TCGA-BH-A0HA SLC2A9 SNP Missense_Mutation 4 9828107 C T 26 58 BRCA TCGA-BH-A0HA NKD2 SNP Splice_Site 5 1033615 G A 40 66 BRCA TCGA-BH-A0HA APC SNP Missense_Mutation 5 112175041 A C 3 62 BRCA TCGA-BH-A0HA DNAH5 SNP Silent 5 13871098 G A 37 46 BRCA TCGA-BH-A0HA PCDHGA3 SNP Missense_Mutation 5 140724340 A G 14 92 BRCA TCGA-BH-A0HA PCDHGB7 SNP Missense_Mutation 5 140799608 G C 45 60 BRCA TCGA-BH-A0HA SQSTM1 SNP Missense_Mutation 5 179260660 C T 23 94 BRCA TCGA-BH-A0HA UGT3A1 SNP Missense_Mutation 5 35955790 C T 31 59 BRCA TCGA-BH-A0HA ADAMTS16 SNP Silent 5 5242243 T A 55 22 BRCA TCGA-BH-A0HA FAM151B SNP Silent 5 79797660 T C 61 53 BRCA TCGA-BH-A0HA LOC100131573 DEL In_Frame_Del 5 93928714 AGA - 7 67 BRCA TCGA-BH-A0HA CAST SNP Silent 5 96101008 A G 2 49 BRCA TCGA-BH-A0HA RFX6 SNP Missense_Mutation 6 117248313 C A 21 64 BRCA TCGA-BH-A0HA MED23 DEL Frame_Shift_Del 6 131923494 TA - 61 51 BRCA TCGA-BH-A0HA HIVEP2 SNP Missense_Mutation 6 143095539 T C 59 56 BRCA TCGA-BH-A0HA LTV1 SNP Missense_Mutation 6 144179065 G A 38 98 BRCA TCGA-BH-A0HA ALDH5A1 SNP Missense_Mutation 6 24502792 A G 14 43 BRCA TCGA-BH-A0HA BTN2A1 SNP Missense_Mutation 6 26468547 G A 40 51 BRCA TCGA-BH-A0HA VPS52 SNP Missense_Mutation 6 33235071 C T 28 93 BRCA TCGA-BH-A0HA ARMC12 SNP Missense_Mutation 6 35715084 C T 19 57 BRCA TCGA-BH-A0HA FGD2 SNP Missense_Mutation 6 36978804 C T 27 65 BRCA TCGA-BH-A0HA KIAA0240 SNP Missense_Mutation 6 42797791 C T 26 67 BRCA TCGA-BH-A0HA CUL7 SNP Missense_Mutation 6 43005511 A G 11 55 BRCA TCGA-BH-A0HA DST DEL In_Frame_Del 6 56495093 CTT - 28 67 BRCA TCGA-BH-A0HA RWDD2A SNP Missense_Mutation 6 83904358 T C 52 83 BRCA TCGA-BH-A0HA FLNC SNP Missense_Mutation 7 128488091 G A 40 100 BRCA TCGA-BH-A0HA ZNF786 SNP Missense_Mutation 7 148769157 A G 14 50 BRCA TCGA-BH-A0HA ZNF282 SNP Missense_Mutation 7 148921569 A G 9 52 BRCA TCGA-BH-A0HA GALNTL5 SNP Splice_Site 7 151699798 G A 35 96 BRCA TCGA-BH-A0HA GALNT11 SNP Missense_Mutation 7 151805352 G T 35 41 BRCA TCGA-BH-A0HA KLHL7 DEL In_Frame_Del 7 23145676 AAG - 5 81 BRCA TCGA-BH-A0HA FKBP9 SNP Silent 7 33044891 G A 41 50 BRCA TCGA-BH-A0HA TRIM50 INS Frame_Shift_Ins 7 72730631 - T 28 61 BRCA TCGA-BH-A0HA FZD9 SNP Missense_Mutation 7 72849076 G A 38 69 BRCA TCGA-BH-A0HA DTX2 SNP Missense_Mutation 7 76126704 C T 23 63 BRCA TCGA-BH-A0HA GRM3 SNP Nonsense_Mutation 7 86468223 C T 27 60 BRCA TCGA-BH-A0HA CROT SNP Missense_Mutation 7 86998781 A G 6 88 BRCA TCGA-BH-A0HA ARPC1B SNP Silent 7 98991736 T C 51 44 BRCA TCGA-BH-A0HA AP4M1 SNP Nonsense_Mutation 7 99704464 C T 27 57 BRCA TCGA-BH-A0HA TMEM74 SNP Missense_Mutation 8 109796495 A G 9 93 BRCA TCGA-BH-A0HA WISP1 SNP Missense_Mutation 8 134237699 G A 46 100 BRCA TCGA-BH-A0HA XPO7 SNP Missense_Mutation 8 21844747 G A 40 100 BRCA TCGA-BH-A0HA CSMD1 SNP Missense_Mutation 8 2815319 G A 40 53 BRCA TCGA-BH-A0HA MBOAT4 SNP Silent 8 29990074 T C 58 40 BRCA TCGA-BH-A0HA FUT10 SNP Splice_Site 8 33318928 A G 6 63 BRCA TCGA-BH-A0HA GINS4 SNP Silent 8 41397268 G A 38 45 BRCA TCGA-BH-A0HA PEX2 SNP Silent 8 77896091 A G 1 53 BRCA TCGA-BH-A0HA DCAF4L2 SNP Missense_Mutation 8 88885440 G A 38 60 BRCA TCGA-BH-A0HA INTS8 SNP Nonsense_Mutation 8 95869179 C T 19 82 BRCA TCGA-BH-A0HA FKBP15 SNP Missense_Mutation 9 115936859 A G 11 81 BRCA TCGA-BH-A0HA TRIM32 SNP Nonsense_Mutation 9 119460577 C T 21 97 BRCA TCGA-BH-A0HA SLC27A4 SNP Splice_Site 9 131115028 T C 59 86 BRCA TCGA-BH-A0HA CRAT SNP Missense_Mutation 9 131864323 T C 50 75 BRCA TCGA-BH-A0HA DPP7 SNP Missense_Mutation 9 140006430 A G 2 71 BRCA TCGA-BH-A0HA ADAMTSL1 SNP Silent 9 18775842 G A 38 17 BRCA TCGA-BH-A0HA IFNA16 SNP Missense_Mutation 9 21216922 C T 22 52 BRCA TCGA-BH-A0HA NPR2 SNP Missense_Mutation 9 35792578 G A 39 61 BRCA TCGA-BH-A0HA PRUNE2 SNP Missense_Mutation 9 79319782 G A 42 51 BRCA TCGA-BH-A0HA ZCCHC6 SNP Missense_Mutation 9 88938113 T C 58 68 BRCA TCGA-BH-A0HB PDE4DIP SNP Missense_Mutation 1 144879284 G A 37 92 BRCA TCGA-BH-A0HB CLCNKB SNP Missense_Mutation 1 16376146 G A 39 49 BRCA TCGA-BH-A0HB MYCL1 SNP Missense_Mutation 1 40363231 G A 38 87 BRCA TCGA-BH-A0HB LEPR DEL Frame_Shift_Del 1 66083718 C - 18 66 BRCA TCGA-BH-A0HB FBXO18 SNP Splice_Site 10 5963220 G T 33 96 BRCA TCGA-BH-A0HB MMP13 SNP Missense_Mutation 11 102826428 G T 41 50 BRCA TCGA-BH-A0HB APOA4 SNP Silent 11 116692402 G A 37 50 BRCA TCGA-BH-A0HB LRIG3 SNP Missense_Mutation 12 59271349 C T 25 100 BRCA TCGA-BH-A0HB FAM90A1 SNP Silent 12 8374829 C T 23 39 BRCA TCGA-BH-A0HB NUPL1 SNP Silent 13 25905699 C T 32 99 BRCA TCGA-BH-A0HB FEM1B SNP Missense_Mutation 15 68582349 A T 8 91 BRCA TCGA-BH-A0HB PRKCB SNP Missense_Mutation 16 24192242 C T 26 100 BRCA TCGA-BH-A0HB EFCAB5 SNP Missense_Mutation 17 28381157 C T 29 48 BRCA TCGA-BH-A0HB VEZF1 SNP Missense_Mutation 17 56060288 C G 20 83 BRCA TCGA-BH-A0HB METRNL SNP Missense_Mutation 17 81052054 G A 34 57 BRCA TCGA-BH-A0HB LRRC30 SNP Missense_Mutation 18 7231362 C G 20 100 BRCA TCGA-BH-A0HB RPSAP58 SNP Nonsense_Mutation 19 24010490 G A 47 82 BRCA TCGA-BH-A0HB PRKCG SNP Missense_Mutation 19 54395012 G A 39 62 BRCA TCGA-BH-A0HB ST6GAL2 SNP Silent 2 107459975 G A 39 45 BRCA TCGA-BH-A0HB ACVR2A SNP Missense_Mutation 2 148657378 C G 20 70 BRCA TCGA-BH-A0HB SPHKAP SNP Missense_Mutation 2 228996728 C T 23 48 BRCA TCGA-BH-A0HB L3MBTL1 SNP Missense_Mutation 20 42169439 G A 38 61 BRCA TCGA-BH-A0HB CHEK2 SNP Missense_Mutation 22 29092948 G A 39 62 BRCA TCGA-BH-A0HB NR3C2 SNP Missense_Mutation 4 149357669 G A 34 98 BRCA TCGA-BH-A0HB LRBA SNP Nonsense_Mutation 4 151412073 T A 55 78 BRCA TCGA-BH-A0HB LDB2 SNP Silent 4 16504398 C T 23 55 BRCA TCGA-BH-A0HB CDS1 SNP Silent 4 85540676 C T 32 54 BRCA TCGA-BH-A0HB ARHGAP24 SNP Missense_Mutation 4 86898785 C T 19 100 BRCA TCGA-BH-A0HB CCNJL SNP Silent 5 159686723 C T 31 48 BRCA TCGA-BH-A0HB DOCK2 SNP Silent 5 169477280 C T 27 39 BRCA TCGA-BH-A0HB IFNA14 SNP Missense_Mutation 9 21239924 G A 43 45 BRCA TCGA-BH-A0HB TAF1L SNP Missense_Mutation 9 32634836 C T 31 63 BRCA TCGA-BH-A0HI SEMA6C SNP Missense_Mutation 1 151111915 G A 40 62 BRCA TCGA-BH-A0HI RYR2 SNP Silent 1 237954734 T C 52 68 BRCA TCGA-BH-A0HI MYPN SNP Missense_Mutation 10 69934047 C T 18 63 BRCA TCGA-BH-A0HI HSPA8 DEL In_Frame_Del 11 122930294 AGG - 7 90 BRCA TCGA-BH-A0HI NRXN2 SNP Missense_Mutation 11 64421180 C T 23 76 BRCA TCGA-BH-A0HI VEZT SNP Missense_Mutation 12 95645809 G A 33 70 BRCA TCGA-BH-A0HI TRIP11 SNP Splice_Site 14 92460257 C T 32 87 BRCA TCGA-BH-A0HI GINS2 DEL Frame_Shift_Del 16 85711840 CTCT - 20 58 BRCA TCGA-BH-A0HI MTMR4 SNP Missense_Mutation 17 56581178 C G 21 63 BRCA TCGA-BH-A0HI LOXHD1 SNP Missense_Mutation 18 44122702 G A 47 96 BRCA TCGA-BH-A0HI MAST1 SNP Missense_Mutation 19 12969490 G A 44 93 BRCA TCGA-BH-A0HI ZEB2 SNP Missense_Mutation 2 145158777 C T 31 100 BRCA TCGA-BH-A0HI TTN SNP Missense_Mutation 2 179427389 T C 57 56 BRCA TCGA-BH-A0HI SULF2 SNP Missense_Mutation 20 46307432 C T 23 71 BRCA TCGA-BH-A0HI PLXNB3 SNP Silent 23 153033170 G A 39 30 BRCA TCGA-BH-A0HI PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-BH-A0HI OR5H1 SNP Silent 3 97851563 T C 52 46 BRCA TCGA-BH-A0HI PDE6B SNP Missense_Mutation 4 658672 C T 26 88 BRCA TCGA-BH-A0HI RGMB SNP Silent 5 98115336 C T 31 47 BRCA TCGA-BH-A0HI ZNF184 SNP Missense_Mutation 6 27419341 C T 22 72 BRCA TCGA-BH-A0HI TRBC1 SNP Missense_Mutation 7 142428804 G T 37 73 BRCA TCGA-BH-A0HI SLC26A7 SNP Missense_Mutation 8 92406479 C A 32 43 BRCA TCGA-BH-A0HI TLR4 SNP Missense_Mutation 9 120474783 C T 29 54 BRCA TCGA-BH-A0HI FAM129B SNP Missense_Mutation 9 130289586 G A 38 69 BRCA TCGA-BH-A0HK MAN1A2 SNP Silent 1 117944862 G A 47 50 BRCA TCGA-BH-A0HK GJA8 SNP Silent 1 147381246 G A 39 32 BRCA TCGA-BH-A0HK TUFT1 SNP Silent 1 151536442 G A 33 59 BRCA TCGA-BH-A0HK LCE2D SNP Missense_Mutation 1 152636817 G A 40 44 BRCA TCGA-BH-A0HK KIF21B SNP Missense_Mutation 1 200973964 G A 45 100 BRCA TCGA-BH-A0HK RASSF5 DEL Frame_Shift_Del 1 206730957 A - 9 81 BRCA TCGA-BH-A0HK PROX1 SNP Missense_Mutation 1 214171121 G A 40 100 BRCA TCGA-BH-A0HK WNT3A SNP Missense_Mutation 1 228210498 G A 37 96 BRCA TCGA-BH-A0HK CCSAP SNP Missense_Mutation 1 229462694 C G 29 55 BRCA TCGA-BH-A0HK FMN2 SNP Missense_Mutation 1 240255687 C T 30 96 BRCA TCGA-BH-A0HK AHDC1 SNP Silent 1 27878126 G A 33 63 BRCA TCGA-BH-A0HK SSBP3 SNP Missense_Mutation 1 54704821 G T 35 71 BRCA TCGA-BH-A0HK KANK4 SNP Missense_Mutation 1 62738879 C T 20 46 BRCA TCGA-BH-A0HK CAMTA1 SNP Missense_Mutation 1 7723467 C G 31 98 BRCA TCGA-BH-A0HK COL17A1 SNP Missense_Mutation 10 105836073 C T 27 73 BRCA TCGA-BH-A0HK C10orf120 SNP Silent 10 124457606 G A 43 21 BRCA TCGA-BH-A0HK MGMT SNP Missense_Mutation 10 131557478 G A 33 62 BRCA TCGA-BH-A0HK CSTF2T SNP Missense_Mutation 10 53457893 C T 21 53 BRCA TCGA-BH-A0HK RNLS SNP Silent 10 90341439 G A 38 42 BRCA TCGA-BH-A0HK PI4K2A SNP Silent 10 99410715 C T 29 77 BRCA TCGA-BH-A0HK AMBRA1 SNP Silent 11 46567261 C T 23 59 BRCA TCGA-BH-A0HK MTA2 SNP Missense_Mutation 11 62363528 C T 29 68 BRCA TCGA-BH-A0HK SLCO2B1 SNP Silent 11 74880255 G T 46 50 BRCA TCGA-BH-A0HK CCDC63 SNP Missense_Mutation 12 111319049 G A 40 40 BRCA TCGA-BH-A0HK CCDC62 SNP Missense_Mutation 12 123285673 G C 33 59 BRCA TCGA-BH-A0HK CCDC62 SNP Missense_Mutation 12 123285827 G C 33 53 BRCA TCGA-BH-A0HK MLL2 SNP Silent 12 49428419 G A 33 55 BRCA TCGA-BH-A0HK AHNAK2 SNP Missense_Mutation 14 105420827 G A 38 50 BRCA TCGA-BH-A0HK TOX4 SNP Missense_Mutation 14 21964747 G A 36 78 BRCA TCGA-BH-A0HK SYNE2 SNP Silent 14 64457239 C T 29 53 BRCA TCGA-BH-A0HK NRXN3 SNP Silent 14 79111725 C T 19 67 BRCA TCGA-BH-A0HK LOC653061 SNP Missense_Mutation 15 23605389 G A 38 40 BRCA TCGA-BH-A0HK CASC4 SNP Missense_Mutation 15 44581304 T C 58 60 BRCA TCGA-BH-A0HK HSP90AB4P SNP Missense_Mutation 15 58983795 G T 33 65 BRCA TCGA-BH-A0HK RHCG SNP Missense_Mutation 15 90020416 A T 9 52 BRCA TCGA-BH-A0HK RNPS1 SNP Silent 16 2313111 C T 26 59 BRCA TCGA-BH-A0HK ITGAX SNP Missense_Mutation 16 31371302 G A 38 44 BRCA TCGA-BH-A0HK TFAP4 SNP Missense_Mutation 16 4310234 G A 41 94 BRCA TCGA-BH-A0HK TEKT3 SNP Silent 17 15234729 G A 37 27 BRCA TCGA-BH-A0HK C17orf53 SNP Splice_Site 17 42230004 G C 33 72 BRCA TCGA-BH-A0HK PELP1 SNP Silent 17 4594696 T A 59 46 BRCA TCGA-BH-A0HK PDK2 SNP Missense_Mutation 17 48174889 G A 37 74 BRCA TCGA-BH-A0HK MC4R SNP Silent 18 58039364 C T 32 84 BRCA TCGA-BH-A0HK OCEL1 SNP Silent 19 17339695 C T 31 41 BRCA TCGA-BH-A0HK RHPN2 SNP Silent 19 33470935 G A 45 66 BRCA TCGA-BH-A0HK EIF3K SNP Missense_Mutation 19 39110987 G C 45 93 BRCA TCGA-BH-A0HK STAM2 SNP Silent 2 152982824 C T 29 69 BRCA TCGA-BH-A0HK FSIP2 SNP Missense_Mutation 2 186671695 G A 33 53 BRCA TCGA-BH-A0HK COL3A1 SNP Nonsense_Mutation 2 189872623 C T 29 85 BRCA TCGA-BH-A0HK ECEL1 SNP Missense_Mutation 2 233347143 T A 58 88 BRCA TCGA-BH-A0HK PPP1R21 SNP Silent 2 48722823 C T 32 46 BRCA TCGA-BH-A0HK TRABD2A SNP Missense_Mutation 2 85051114 G A 39 50 BRCA TCGA-BH-A0HK SNX5 SNP Splice_Site 20 17934762 C A 32 100 BRCA TCGA-BH-A0HK DZANK1 SNP Missense_Mutation 20 18374937 C T 31 65 BRCA TCGA-BH-A0HK ZNFX1 SNP Silent 20 47864113 C T 29 52 BRCA TCGA-BH-A0HK EWSR1 SNP Missense_Mutation 22 29693913 G A 33 91 BRCA TCGA-BH-A0HK MYH9 DEL In_Frame_Del 22 36689510 CTC - 32 75 BRCA TCGA-BH-A0HK ATG4A SNP Missense_Mutation 23 107381041 G A 48 69 BRCA TCGA-BH-A0HK IRS4 SNP Missense_Mutation 23 107976114 C G 30 71 BRCA TCGA-BH-A0HK KIAA1210 SNP Missense_Mutation 23 118284464 G A 45 53 BRCA TCGA-BH-A0HK GRPR SNP Missense_Mutation 23 16142101 C G 32 50 BRCA TCGA-BH-A0HK BRWD3 SNP Missense_Mutation 23 79980464 G A 39 64 BRCA TCGA-BH-A0HK IQCB1 SNP Missense_Mutation 3 121527844 C G 32 65 BRCA TCGA-BH-A0HK ATP2C1 SNP Silent 3 130714935 C T 31 57 BRCA TCGA-BH-A0HK LOC256374 SNP Missense_Mutation 3 138363214 C T 30 56 BRCA TCGA-BH-A0HK HTR3E SNP Missense_Mutation 3 183823927 G A 38 54 BRCA TCGA-BH-A0HK UBP1 SNP Missense_Mutation 3 33434910 G A 45 72 BRCA TCGA-BH-A0HK GNL3 SNP Silent 3 52724624 G A 33 53 BRCA TCGA-BH-A0HK FAT4 SNP Nonsense_Mutation 4 126337775 C G 29 65 BRCA TCGA-BH-A0HK LAP3 SNP Silent 4 17585131 G A 47 75 BRCA TCGA-BH-A0HK POLN SNP Missense_Mutation 4 2172878 G A 45 77 BRCA TCGA-BH-A0HK ABLIM2 SNP Silent 4 8098975 G A 37 53 BRCA TCGA-BH-A0HK MYO10 SNP Silent 5 16761623 C T 32 63 BRCA TCGA-BH-A0HK SLIT3 SNP Silent 5 168310287 G A 45 54 BRCA TCGA-BH-A0HK ITGA1 SNP Missense_Mutation 5 52216230 G C 33 75 BRCA TCGA-BH-A0HK ANKRD32 SNP Missense_Mutation 5 94030568 G A 43 86 BRCA TCGA-BH-A0HK UTRN SNP Missense_Mutation 6 144784000 G A 45 65 BRCA TCGA-BH-A0HK HIST1H3B DEL Frame_Shift_Del 6 26031883 CT - 28 98 BRCA TCGA-BH-A0HK ZSCAN16 SNP Missense_Mutation 6 28093465 G A 33 78 BRCA TCGA-BH-A0HK GSTA1 SNP Missense_Mutation 6 52661025 G A 42 85 BRCA TCGA-BH-A0HK TINAG SNP Nonsense_Mutation 6 54173424 C T 29 57 BRCA TCGA-BH-A0HK ORC3 SNP Missense_Mutation 6 88313147 G A 45 73 BRCA TCGA-BH-A0HK PRSS58 SNP Missense_Mutation 7 141952311 C T 30 73 BRCA TCGA-BH-A0HK VPS13B SNP Silent 8 100205158 C G 29 52 BRCA TCGA-BH-A0HK UBR5 SNP Missense_Mutation 8 103274157 C T 32 100 BRCA TCGA-BH-A0HK HEATR7A SNP Missense_Mutation 8 145246717 G A 38 50 BRCA TCGA-BH-A0HK ZBTB10 SNP Missense_Mutation 8 81399907 C T 30 62 BRCA TCGA-BH-A0HK ZFAND1 SNP Missense_Mutation 8 82629498 G A 45 96 BRCA TCGA-BH-A0HK TXN SNP Missense_Mutation 9 113006463 C T 29 77 BRCA TCGA-BH-A0HK AQP7 SNP Missense_Mutation 9 33386975 C T 27 51 BRCA TCGA-BH-A0HK MAMDC2 SNP Silent 9 72723278 G A 45 54 BRCA TCGA-BH-A0HL VANGL1 SNP Missense_Mutation 1 116226619 G A 39 66 BRCA TCGA-BH-A0HL ABL2 SNP Missense_Mutation 1 179078567 C T 32 81 BRCA TCGA-BH-A0HL RAB3GAP2 SNP Silent 1 220325077 G C 41 48 BRCA TCGA-BH-A0HL GATA3 DEL Frame_Shift_Del 10 8115948 CCACACCACCCCT - 18 82 BRCA TCGA-BH-A0HL MLL DEL Frame_Shift_Del 11 118363887 AGCCTTTAGATCTAGAAGGAGTCAAG - 7 61 BRCA TCGA-BH-A0HL MUC5B DEL Frame_Shift_Del 11 1269750 C - 26 43 BRCA TCGA-BH-A0HL MTUS2 SNP Missense_Mutation 13 29600570 C T 19 51 BRCA TCGA-BH-A0HL IGHV3-30 SNP Missense_Mutation 14 106791268 C T 19 47 BRCA TCGA-BH-A0HL PELI2 SNP Silent 14 56757012 C T 23 43 BRCA TCGA-BH-A0HL CIRH1A SNP Missense_Mutation 16 69184739 C T 31 80 BRCA TCGA-BH-A0HL RAI1 SNP Nonsense_Mutation 17 17697697 C T 21 71 BRCA TCGA-BH-A0HL IFI35 SNP Splice_Site 17 41164295 G A 44 75 BRCA TCGA-BH-A0HL AFG3L2 SNP Missense_Mutation 18 12329635 C T 24 98 BRCA TCGA-BH-A0HL NEDD4L SNP Silent 18 55990551 G A 33 53 BRCA TCGA-BH-A0HL TMIGD2 DEL Frame_Shift_Del 19 4292606 C - 30 46 BRCA TCGA-BH-A0HL GYS1 SNP Missense_Mutation 19 49472669 G A 38 70 BRCA TCGA-BH-A0HL TTN SNP Missense_Mutation 2 179499272 C T 31 85 BRCA TCGA-BH-A0HL IQCA1 SNP Missense_Mutation 2 237308121 T G 62 73 BRCA TCGA-BH-A0HL ITSN2 SNP Missense_Mutation 2 24531572 G A 45 65 BRCA TCGA-BH-A0HL SAMD10 SNP Missense_Mutation 20 62607179 G A 46 95 BRCA TCGA-BH-A0HL FAM47C SNP Missense_Mutation 23 37027222 C T 23 45 BRCA TCGA-BH-A0HL PIM2 SNP Missense_Mutation 23 48772372 G A 40 53 BRCA TCGA-BH-A0HL ZCCHC5 SNP Missense_Mutation 23 77913883 A C 7 57 BRCA TCGA-BH-A0HL DNASE1L3 SNP Missense_Mutation 3 58190568 C T 29 79 BRCA TCGA-BH-A0HL CABS1 SNP Silent 4 71200897 C T 19 48 BRCA TCGA-BH-A0HL RICTOR SNP Silent 5 38952359 T C 61 34 BRCA TCGA-BH-A0HL SOBP SNP Missense_Mutation 6 107955025 C T 23 76 BRCA TCGA-BH-A0HL SPACA1 SNP Missense_Mutation 6 88769255 G T 41 81 BRCA TCGA-BH-A0HL WBSCR22 SNP Missense_Mutation 7 73107983 C T 31 65 BRCA TCGA-BH-A0HL GALNT12 SNP Silent 9 101589095 C T 27 35 BRCA TCGA-BH-A0HL COL5A1 SNP Silent 9 137591855 G A 34 70 BRCA TCGA-BH-A0HN GNB1 SNP Missense_Mutation 1 1720602 A G 12 90 BRCA TCGA-BH-A0HN COL16A1 SNP Missense_Mutation 1 32124115 C T 23 90 BRCA TCGA-BH-A0HN OPTN SNP Missense_Mutation 10 13166055 G A 33 73 BRCA TCGA-BH-A0HN GRID1 SNP Missense_Mutation 10 87362239 G A 39 66 BRCA TCGA-BH-A0HN GLB1L3 SNP Missense_Mutation 11 134147635 G A 37 68 BRCA TCGA-BH-A0HN SLC39A13 SNP Silent 11 47436878 C T 31 47 BRCA TCGA-BH-A0HN CARNS1 DEL In_Frame_Del 11 67187071 GGA - 47 56 BRCA TCGA-BH-A0HN AMOTL1 SNP Missense_Mutation 11 94554978 G T 34 65 BRCA TCGA-BH-A0HN MRPL45 DEL In_Frame_Del 17 36476574 GTTCAA - 48 78 BRCA TCGA-BH-A0HN C17orf53 SNP Silent 17 42225492 C T 21 44 BRCA TCGA-BH-A0HN TIMM22 SNP Missense_Mutation 17 900500 C T 23 59 BRCA TCGA-BH-A0HN GIPC3 SNP Nonsense_Mutation 19 3586586 C T 27 60 BRCA TCGA-BH-A0HN TSKS SNP Missense_Mutation 19 50251415 G A 33 66 BRCA TCGA-BH-A0HN ATP7A SNP Missense_Mutation 23 77268400 A G 8 69 BRCA TCGA-BH-A0HN PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA TCGA-BH-A0HN ANK2 SNP Silent 4 114158316 C T 19 50 BRCA TCGA-BH-A0HN SGCB SNP Missense_Mutation 4 52899712 C A 30 98 BRCA TCGA-BH-A0HN BMP2K SNP Missense_Mutation 4 79780777 T C 49 89 BRCA TCGA-BH-A0HN C4orf36 SNP Missense_Mutation 4 87809322 G C 34 63 BRCA TCGA-BH-A0HN LAMA2 DEL Frame_Shift_Del 6 129813116 GTTAAAAAGCTTTT - 36 73 BRCA TCGA-BH-A0HN MDN1 DEL Frame_Shift_Del 6 90402199 T - 58 64 BRCA TCGA-BH-A0HN NUP205 SNP Missense_Mutation 7 135311088 G A 38 80 BRCA TCGA-BH-A0HN OR6B1 DEL Frame_Shift_Del 7 143701973 TCAAGGAAGC - 58 85 BRCA TCGA-BH-A0HN MLL3 SNP Missense_Mutation 7 151962208 G A 45 98 BRCA TCGA-BH-A0HN C7orf57 SNP Missense_Mutation 7 48086112 C G 29 81 BRCA TCGA-BH-A0HN PXDNL SNP Silent 8 52361599 G A 40 36 BRCA TCGA-BH-A0HN ABCA1 SNP Missense_Mutation 9 107568529 G A 35 100 BRCA TCGA-BH-A0HN SVEP1 SNP Missense_Mutation 9 113169227 C T 31 46 BRCA TCGA-BH-A0HN LPAR1 SNP Silent 9 113637890 G A 45 88 BRCA TCGA-BH-A0HO KPRP SNP Missense_Mutation 1 152732639 G A 42 44 BRCA TCGA-BH-A0HO FOXD3 SNP Silent 1 63789206 G A 33 92 BRCA TCGA-BH-A0HO CHST11 SNP Silent 12 105150939 C T 23 38 BRCA TCGA-BH-A0HO NDN SNP Missense_Mutation 15 23931940 C T 27 61 BRCA TCGA-BH-A0HO LINGO1 SNP Missense_Mutation 15 77907821 C T 28 86 BRCA TCGA-BH-A0HO SMCHD1 SNP Missense_Mutation 18 2747542 G T 33 56 BRCA TCGA-BH-A0HO FCGBP SNP Silent 19 40408747 C T 25 58 BRCA TCGA-BH-A0HO TMC4 SNP Missense_Mutation 19 54676772 G A 41 57 BRCA TCGA-BH-A0HO BACH1 SNP Nonsense_Mutation 21 30699316 C T 27 65 BRCA TCGA-BH-A0HO ENTHD1 SNP Nonsense_Mutation 22 40161426 C A 30 66 BRCA TCGA-BH-A0HO FNDC3B SNP Missense_Mutation 3 171851264 A G 16 83 BRCA TCGA-BH-A0HO DOCK2 SNP Missense_Mutation 5 169127104 G A 44 80 BRCA TCGA-BH-A0HO RAI14 SNP Missense_Mutation 5 34812309 A C 3 75 BRCA TCGA-BH-A0HO ITGA2 SNP Missense_Mutation 5 52356790 C T 31 64 BRCA TCGA-BH-A0HO POLD2 SNP Silent 7 44156512 G A 40 41 BRCA TCGA-BH-A0HO PLEC SNP Silent 8 145001190 G A 47 55 BRCA TCGA-BH-A0HO ZBTB43 SNP Silent 9 129595094 T C 60 66 BRCA TCGA-BH-A0HP FRRS1 SNP Missense_Mutation 1 100174482 G A 45 46 BRCA TCGA-BH-A0HP VAV3 SNP Missense_Mutation 1 108303488 C G 32 98 BRCA TCGA-BH-A0HP PROK1 SNP Silent 1 110998922 C T 30 51 BRCA TCGA-BH-A0HP MTOR SNP Missense_Mutation 1 11174872 C G 30 95 BRCA TCGA-BH-A0HP ADORA3 SNP Silent 1 112043016 G A 45 49 BRCA TCGA-BH-A0HP PRAMEF4 SNP Silent 1 12939611 C T 21 48 BRCA TCGA-BH-A0HP PRAMEF4 SNP Missense_Mutation 1 12943161 G T 35 60 BRCA TCGA-BH-A0HP PEX11B SNP Silent 1 145522859 C T 31 28 BRCA TCGA-BH-A0HP CHD1L SNP Nonsense_Mutation 1 146759364 C T 27 65 BRCA TCGA-BH-A0HP PSMB4 SNP Missense_Mutation 1 151372187 C G 30 64 BRCA TCGA-BH-A0HP RPTN SNP Missense_Mutation 1 152129019 C G 29 62 BRCA TCGA-BH-A0HP ARHGAP30 SNP Silent 1 161018228 G A 33 53 BRCA TCGA-BH-A0HP SPEN SNP Nonsense_Mutation 1 16257914 C T 21 68 BRCA TCGA-BH-A0HP RGS4 SNP Missense_Mutation 1 163043290 G A 45 94 BRCA TCGA-BH-A0HP NUF2 SNP Missense_Mutation 1 163318851 G A 35 57 BRCA TCGA-BH-A0HP HSPB7 SNP Splice_site 1 16342076 C T 29 71 BRCA TCGA-BH-A0HP FMO1 SNP Silent 1 171251126 G A 45 46 BRCA TCGA-BH-A0HP CACNA1E SNP Splice_site 1 181767970 G A 33 67 BRCA TCGA-BH-A0HP HMCN1 SNP Missense_Mutation 1 186014856 C T 32 97 BRCA TCGA-BH-A0HP CFH SNP Missense_Mutation 1 196695948 C T 32 78 BRCA TCGA-BH-A0HP CACNA1S SNP Silent 1 201030419 C T 32 60 BRCA TCGA-BH-A0HP DSTYK SNP Missense_Mutation 1 205130512 C T 30 100 BRCA TCGA-BH-A0HP SLC45A3 SNP Missense_Mutation 1 205628672 C T 20 56 BRCA TCGA-BH-A0HP EIF2D SNP Silent 1 206776375 G C 33 34 BRCA TCGA-BH-A0HP SLC30A1 SNP Missense_Mutation 1 211751624 G T 46 71 BRCA TCGA-BH-A0HP USH2A SNP Missense_Mutation 1 216061968 G C 33 60 BRCA TCGA-BH-A0HP SUSD4 SNP Missense_Mutation 1 223402560 G C 45 94 BRCA TCGA-BH-A0HP ENAH SNP Silent 1 225742783 G A 37 48 BRCA TCGA-BH-A0HP OR2T27 SNP Missense_Mutation 1 248813498 C T 31 48 BRCA TCGA-BH-A0HP POU3F1 SNP Missense_Mutation 1 38511359 C A 27 91 BRCA TCGA-BH-A0HP KIAA0754 SNP Missense_Mutation 1 39877483 G C 33 81 BRCA TCGA-BH-A0HP KIAA0754 SNP Missense_Mutation 1 39877816 G C 33 59 BRCA TCGA-BH-A0HP RLF SNP Missense_Mutation 1 40705986 G A 48 98 BRCA TCGA-BH-A0HP NFYC SNP Silent 1 41228646 G A 33 63 BRCA TCGA-BH-A0HP PTPRF SNP Missense_Mutation 1 44079330 G A 41 100 BRCA TCGA-BH-A0HP PTPRF SNP Missense_Mutation 1 44087660 C A 21 100 BRCA TCGA-BH-A0HP PTCH2 SNP Missense_Mutation 1 45295617 C T 30 96 BRCA TCGA-BH-A0HP CYP4B1 SNP Missense_Mutation 1 47283813 C T 32 83 BRCA TCGA-BH-A0HP CHD5 SNP Silent 1 6215763 C T 23 41 BRCA TCGA-BH-A0HP ESPN SNP Missense_Mutation 1 6504709 C A 21 87 BRCA TCGA-BH-A0HP AK4 SNP Silent 1 65656505 C T 30 29 BRCA TCGA-BH-A0HP DNAJC6 SNP Splice_site 1 65878608 C G 28 99 BRCA TCGA-BH-A0HP DNAJC11 SNP Missense_Mutation 1 6727831 C G 30 83 BRCA TCGA-BH-A0HP ZNHIT6 SNP Missense_Mutation 1 86144457 C A 32 84 BRCA TCGA-BH-A0HP CLSTN1 SNP Missense_Mutation 1 9794165 C T 31 73 BRCA TCGA-BH-A0HP LZIC SNP Missense_Mutation 1 9995660 C T 29 100 BRCA TCGA-BH-A0HP CNNM2 SNP Silent 10 104836880 G A 33 74 BRCA TCGA-BH-A0HP TTC40 SNP Missense_Mutation 10 134751139 C T 30 68 BRCA TCGA-BH-A0HP FRMD4A SNP Missense_Mutation 10 13838563 C A 32 88 BRCA TCGA-BH-A0HP KIF5B SNP Missense_Mutation 10 32344886 C T 31 99 BRCA TCGA-BH-A0HP AKR1C1 SNP Missense_Mutation 10 5014915 G A 45 53 BRCA TCGA-BH-A0HP A1CF SNP Missense_Mutation 10 52595854 G A 38 75 BRCA TCGA-BH-A0HP ZWINT SNP Missense_Mutation 10 58120134 C T 29 46 BRCA TCGA-BH-A0HP ANK3 SNP Missense_Mutation 10 61815778 C G 32 95 BRCA TCGA-BH-A0HP ANK3 SNP Missense_Mutation 10 61832745 C G 29 89 BRCA TCGA-BH-A0HP DDX21 SNP Silent 10 70719576 G A 33 56 BRCA TCGA-BH-A0HP GATA3 SNP Missense_Mutation 10 8106058 T A 51 92 BRCA TCGA-BH-A0HP PTEN SNP Splice_Site 10 89712018 T C 57 90 BRCA TCGA-BH-A0HP IDE SNP Missense_Mutation 10 94230067 G C 45 98 BRCA TCGA-BH-A0HP CYP2C18 SNP Nonsense_Mutation 10 96447986 C T 29 53 BRCA TCGA-BH-A0HP TCTN3 SNP Silent 10 97424016 C T 29 67 BRCA TCGA-BH-A0HP OPALIN SNP Missense_Mutation 10 98108092 C T 32 51 BRCA TCGA-BH-A0HP TLL2 SNP Missense_Mutation 10 98205902 C G 29 75 BRCA TCGA-BH-A0HP USP28 SNP Nonsense_Mutation 11 113723334 G A 45 78 BRCA TCGA-BH-A0HP SIK3 SNP Splice_Site 11 116798097 C A 32 97 BRCA TCGA-BH-A0HP CDON SNP Missense_Mutation 11 125871671 C G 32 87 BRCA TCGA-BH-A0HP ARHGAP32 SNP Missense_Mutation 11 128844843 G C 33 84 BRCA TCGA-BH-A0HP CSTF3 SNP Missense_Mutation 11 33107491 G A 41 95 BRCA TCGA-BH-A0HP CREB3L1 SNP Missense_Mutation 11 46334219 G C 33 57 BRCA TCGA-BH-A0HP OR51D1 SNP Silent 11 4661785 C T 32 51 BRCA TCGA-BH-A0HP PACSIN3 DNP Missense_Mutation 11 47201107 CT TG 32 100 BRCA TCGA-BH-A0HP TRIM51 SNP Nonsense_Mutation 11 55653691 G A 41 51 BRCA TCGA-BH-A0HP OR52N4 SNP Missense_Mutation 11 5776902 C T 29 50 BRCA TCGA-BH-A0HP PLAC1L SNP Silent 11 59810970 G A 45 67 BRCA TCGA-BH-A0HP PCNXL3 SNP Nonsense_Mutation 11 65403698 C G 29 80 BRCA TCGA-BH-A0HP UTP20 SNP Missense_Mutation 12 101776918 G A 33 60 BRCA TCGA-BH-A0HP FBXO21 SNP Missense_Mutation 12 117583909 C T 32 69 BRCA TCGA-BH-A0HP HCAR1 SNP Silent 12 123214164 G A 33 45 BRCA TCGA-BH-A0HP SCARB1 SNP Nonsense_Mutation 12 125292447 G T 45 61 BRCA TCGA-BH-A0HP TMEM132D SNP Silent 12 129558669 G A 45 51 BRCA TCGA-BH-A0HP TMEM132D SNP Silent 12 130015639 G A 37 49 BRCA TCGA-BH-A0HP ANKLE2 SNP Missense_Mutation 12 133306539 C G 29 66 BRCA TCGA-BH-A0HP C12orf32 SNP Silent 12 2997577 C T 29 55 BRCA TCGA-BH-A0HP DDX11 SNP Missense_Mutation 12 31249282 G A 37 57 BRCA TCGA-BH-A0HP LIMA1 SNP Missense_Mutation 12 50616256 G C 33 62 BRCA TCGA-BH-A0HP MON2 SNP Missense_Mutation 12 62954645 G C 45 100 BRCA TCGA-BH-A0HP XPOT SNP Missense_Mutation 12 64814203 G C 45 100 BRCA TCGA-BH-A0HP LAG3 SNP Missense_Mutation 12 6886451 C T 29 45 BRCA TCGA-BH-A0HP MGAT4C SNP Missense_Mutation 12 86383282 C G 29 83 BRCA TCGA-BH-A0HP ATP2B1 SNP Silent 12 90005123 C T 32 100 BRCA TCGA-BH-A0HP A2ML1 SNP Missense_Mutation 12 9001389 C G 32 56 BRCA TCGA-BH-A0HP APAF1 SNP Missense_Mutation 12 99042512 C T 32 65 BRCA TCGA-BH-A0HP NEK5 SNP Nonsense_Mutation 13 52663415 G A 45 80 BRCA TCGA-BH-A0HP SLAIN1 SNP Missense_Mutation 13 78327410 C T 32 95 BRCA TCGA-BH-A0HP AHNAK2 SNP Silent 14 105409680 G A 41 38 BRCA TCGA-BH-A0HP AHNAK2 SNP Silent 14 105414690 G T 45 45 BRCA TCGA-BH-A0HP CDCA4 SNP Missense_Mutation 14 105478091 G A 45 73 BRCA TCGA-BH-A0HP BTBD6 SNP Silent 14 105716550 C T 31 33 BRCA TCGA-BH-A0HP EDDM3A SNP Missense_Mutation 14 21216085 G A 33 55 BRCA TCGA-BH-A0HP PSMC6 SNP Silent 14 53177881 C T 29 52 BRCA TCGA-BH-A0HP EXOC5 SNP Silent 14 57696455 A G 16 65 BRCA TCGA-BH-A0HP STON2 SNP Missense_Mutation 14 81737194 G T 33 70 BRCA TCGA-BH-A0HP C14orf142 SNP Silent 14 93673338 C T 32 68 BRCA TCGA-BH-A0HP MGA SNP Missense_Mutation 15 42052536 C G 32 43 BRCA TCGA-BH-A0HP MAP1A SNP Missense_Mutation 15 43820850 G T 42 78 BRCA TCGA-BH-A0HP CATSPER2 SNP Silent 15 43940233 C T 32 47 BRCA TCGA-BH-A0HP ITGA11 SNP Silent 15 68600011 G A 33 47 BRCA TCGA-BH-A0HP SHISA9 SNP Missense_Mutation 16 13010601 G A 33 81 BRCA TCGA-BH-A0HP FOPNL SNP Missense_Mutation 16 15973705 G C 45 57 BRCA TCGA-BH-A0HP DNAH3 SNP Missense_Mutation 16 20975814 C G 30 100 BRCA TCGA-BH-A0HP ERN2 SNP Silent 16 23702689 C T 30 94 BRCA TCGA-BH-A0HP HS3ST4 SNP Silent 16 26147248 C T 22 47 BRCA TCGA-BH-A0HP KIF22 SNP Missense_Mutation 16 29814143 G A 34 50 BRCA TCGA-BH-A0HP SRL SNP Missense_Mutation 16 4247856 G T 33 100 BRCA TCGA-BH-A0HP PPL SNP Silent 16 4935302 G C 45 51 BRCA TCGA-BH-A0HP CDH1 SNP Splice_Site 16 68844099 G A 34 94 BRCA TCGA-BH-A0HP WWP2 SNP Silent 16 69973789 G C 45 57 BRCA TCGA-BH-A0HP ZFHX3 SNP Silent 16 72830257 C T 32 57 BRCA TCGA-BH-A0HP CENPN SNP Missense_Mutation 16 81062223 G C 33 55 BRCA TCGA-BH-A0HP FAM38A SNP Missense_Mutation 16 88783032 C G 32 62 BRCA TCGA-BH-A0HP FANCA SNP Missense_Mutation 16 89831324 C G 32 64 BRCA TCGA-BH-A0HP FANCA SNP Silent 16 89831364 C T 32 52 BRCA TCGA-BH-A0HP NCOR1 SNP Missense_Mutation 17 16068438 G A 33 95 BRCA TCGA-BH-A0HP MMP28 SNP Missense_Mutation 17 34105959 C G 32 68 BRCA TCGA-BH-A0HP ARHGAP23 SNP Silent 17 36623403 G A 33 69 BRCA TCGA-BH-A0HP TUBD1 SNP Missense_Mutation 17 57968254 C G 32 51 BRCA TCGA-BH-A0HP SCN4A SNP Missense_Mutation 17 62041972 G C 33 67 BRCA TCGA-BH-A0HP ARMC7 SNP Missense_Mutation 17 73106677 G A 45 100 BRCA TCGA-BH-A0HP CABYR SNP Splice_Site 18 21741479 G C 33 76 BRCA TCGA-BH-A0HP NEDD4L SNP Missense_Mutation 18 55916155 G C 33 92 BRCA TCGA-BH-A0HP OR7A17 SNP Silent 19 14992033 G A 45 58 BRCA TCGA-BH-A0HP RASAL3 SNP Missense_Mutation 19 15575074 C A 32 53 BRCA TCGA-BH-A0HP GLT25D1 SNP Missense_Mutation 19 17690311 G C 33 63 BRCA TCGA-BH-A0HP TSHZ3 SNP Silent 19 31768347 G C 45 53 BRCA TCGA-BH-A0HP LTBP4 SNP Missense_Mutation 19 41114263 C G 31 48 BRCA TCGA-BH-A0HP ZNF283 SNP Nonsense_Mutation 19 44351927 C T 31 49 BRCA TCGA-BH-A0HP EML2 SNP Missense_Mutation 19 46116900 C G 29 75 BRCA TCGA-BH-A0HP ZNF83 SNP Missense_Mutation 19 53116808 C T 32 52 BRCA TCGA-BH-A0HP ZNF28 SNP Missense_Mutation 19 53303801 G A 45 72 BRCA TCGA-BH-A0HP LILRB5 SNP Silent 19 54756786 G T 41 47 BRCA TCGA-BH-A0HP PTPRH SNP Nonsense_Mutation 19 55715306 G A 45 51 BRCA TCGA-BH-A0HP EVI5L SNP Silent 19 7918195 G A 33 51 BRCA TCGA-BH-A0HP MED16 SNP Missense_Mutation 19 880067 G C 41 78 BRCA TCGA-BH-A0HP AFF3 SNP Missense_Mutation 2 100625289 G T 45 67 BRCA TCGA-BH-A0HP BUB1 SNP Missense_Mutation 2 111398712 C G 32 99 BRCA TCGA-BH-A0HP NEB SNP Missense_Mutation 2 152404198 C T 31 88 BRCA TCGA-BH-A0HP UPP2 SNP Silent 2 158991285 C G 31 36 BRCA TCGA-BH-A0HP METTL8 SNP Missense_Mutation 2 172196014 G C 45 98 BRCA TCGA-BH-A0HP TTN SNP Missense_Mutation 2 179497091 C G 32 52 BRCA TCGA-BH-A0HP ZNF385B SNP Nonsense_Mutation 2 180634302 G A 40 63 BRCA TCGA-BH-A0HP MFSD6 SNP Silent 2 191301691 C T 29 36 BRCA TCGA-BH-A0HP SF3B1 SNP Missense_Mutation 2 198267361 T C 61 92 BRCA TCGA-BH-A0HP FAM126B SNP Silent 2 201887608 C G 30 58 BRCA TCGA-BH-A0HP NOP58 SNP Missense_Mutation 2 203139857 C G 29 95 BRCA TCGA-BH-A0HP MAP2 SNP Missense_Mutation 2 210557864 C G 32 63 BRCA TCGA-BH-A0HP ERBB4 SNP Silent 2 212285277 C T 21 61 BRCA TCGA-BH-A0HP DNPEP SNP Missense_Mutation 2 220251466 G T 34 98 BRCA TCGA-BH-A0HP SPEG SNP Missense_Mutation 2 220338317 C G 29 56 BRCA TCGA-BH-A0HP TRIP12 DEL Splice_Site 2 230678948 C - 18 100 BRCA TCGA-BH-A0HP TRPM8 SNP Missense_Mutation 2 234878931 C T 30 80 BRCA TCGA-BH-A0HP ATAD2B SNP Missense_Mutation 2 24011418 G C 45 81 BRCA TCGA-BH-A0HP PRR21 SNP Missense_Mutation 2 240982327 G C 45 57 BRCA TCGA-BH-A0HP KIF3C SNP Silent 2 26203692 G T 45 53 BRCA TCGA-BH-A0HP HAAO SNP Silent 2 42997320 G A 45 64 BRCA TCGA-BH-A0HP SPTBN1 SNP Missense_Mutation 2 54891600 C T 19 59 BRCA TCGA-BH-A0HP XPO1 SNP Missense_Mutation 2 61708356 G C 45 72 BRCA TCGA-BH-A0HP ZNF638 SNP Missense_Mutation 2 71576606 G C 45 54 BRCA TCGA-BH-A0HP C2orf89 SNP Missense_Mutation 2 85051283 G C 33 70 BRCA TCGA-BH-A0HP INPP4A SNP Missense_Mutation 2 99203969 G C 33 85 BRCA TCGA-BH-A0HP TTLL9 SNP Splice_Site 20 30486275 G A 33 77 BRCA TCGA-BH-A0HP EIF2S2 SNP Missense_Mutation 20 32685285 G C 33 56 BRCA TCGA-BH-A0HP C20orf111 SNP Missense_Mutation 20 42835595 C G 29 94 BRCA TCGA-BH-A0HP SLC13A3 SNP Missense_Mutation 20 45188729 C T 29 44 BRCA TCGA-BH-A0HP PREX1 DEL Frame_Shift_Del 20 47267491 G - 39 65 BRCA TCGA-BH-A0HP ADNP SNP Missense_Mutation 20 49508007 C T 29 83 BRCA TCGA-BH-A0HP ADNP SNP Missense_Mutation 20 49508164 C G 32 76 BRCA TCGA-BH-A0HP ADNP SNP Missense_Mutation 20 49508270 C G 30 66 BRCA TCGA-BH-A0HP ADNP SNP Missense_Mutation 20 49508298 C G 29 88 BRCA TCGA-BH-A0HP ADNP SNP Missense_Mutation 20 49508391 C G 29 96 BRCA TCGA-BH-A0HP ADNP SNP Missense_Mutation 20 49508687 C G 32 77 BRCA TCGA-BH-A0HP TSHZ2 SNP Missense_Mutation 20 51872856 G A 45 84 BRCA TCGA-BH-A0HP TRMT6 SNP Silent 20 5921753 C T 32 54 BRCA TCGA-BH-A0HP RUNX1 INS Frame_Shift_Ins 21 36252856 - T 32 100 BRCA TCGA-BH-A0HP DYRK1A SNP Missense_Mutation 21 38845021 C T 31 100 BRCA TCGA-BH-A0HP DYRK1A SNP Missense_Mutation 21 38853104 G C 45 50 BRCA TCGA-BH-A0HP C22orf28 SNP Missense_Mutation 22 32788229 C G 32 100 BRCA TCGA-BH-A0HP LARGE SNP Missense_Mutation 22 33960864 C G 32 100 BRCA TCGA-BH-A0HP CSF2RB SNP Missense_Mutation 22 37334464 C A 29 74 BRCA TCGA-BH-A0HP SREBF2 SNP Missense_Mutation 22 42293122 G A 45 61 BRCA TCGA-BH-A0HP RRP7A SNP Missense_Mutation 22 42912034 G A 45 49 BRCA TCGA-BH-A0HP ACR SNP Missense_Mutation 22 51183213 C G 32 57 BRCA TCGA-BH-A0HP ARMCX2 SNP Missense_Mutation 23 100910882 C G 32 69 BRCA TCGA-BH-A0HP ARMCX2 SNP Missense_Mutation 23 100910946 C A 32 52 BRCA TCGA-BH-A0HP ARMCX2 SNP Missense_Mutation 23 100910996 C T 29 69 BRCA TCGA-BH-A0HP ARMCX2 SNP Silent 23 100911132 C T 29 54 BRCA TCGA-BH-A0HP ARMCX2 SNP Missense_Mutation 23 100911530 C G 32 72 BRCA TCGA-BH-A0HP LONRF3 SNP Missense_Mutation 23 118108919 C T 32 58 BRCA TCGA-BH-A0HP RENBP DEL Frame_Shift_Del 23 153206997 G - 39 38 BRCA TCGA-BH-A0HP BRCC3 SNP Silent 23 154327650 G A 33 57 BRCA TCGA-BH-A0HP PHKA2 SNP Silent 23 18936866 G A 45 68 BRCA TCGA-BH-A0HP PQBP1 SNP Missense_Mutation 23 48759632 G A 45 83 BRCA TCGA-BH-A0HP CCNB3 SNP Missense_Mutation 23 50052923 C T 31 58 BRCA TCGA-BH-A0HP WNK3 SNP Missense_Mutation 23 54319370 G A 45 57 BRCA TCGA-BH-A0HP GDPD2 SNP Nonsense_Mutation 23 69652507 C T 21 65 BRCA TCGA-BH-A0HP TAF1 SNP Missense_Mutation 23 70607298 G A 37 93 BRCA TCGA-BH-A0HP PCDH19 SNP Missense_Mutation 23 99662072 G C 45 63 BRCA TCGA-BH-A0HP C3orf36 SNP Missense_Mutation 3 133647431 C T 29 54 BRCA TCGA-BH-A0HP TFDP2 SNP Splice_Site 3 141671859 C G 32 72 BRCA TCGA-BH-A0HP C3orf33 SNP Missense_Mutation 3 155493550 C G 29 71 BRCA TCGA-BH-A0HP KPNA4 SNP Missense_Mutation 3 160225904 C G 32 96 BRCA TCGA-BH-A0HP YEATS2 SNP Missense_Mutation 3 183432996 G A 37 92 BRCA TCGA-BH-A0HP RTP4 SNP Silent 3 187088789 G A 45 54 BRCA TCGA-BH-A0HP KAT2B SNP Silent 3 20161094 C A 29 76 BRCA TCGA-BH-A0HP GLB1 SNP Missense_Mutation 3 33059951 C G 25 48 BRCA TCGA-BH-A0HP GOLGA4 SNP Missense_Mutation 3 37369998 G A 33 96 BRCA TCGA-BH-A0HP CTDSPL SNP Missense_Mutation 3 38006086 G A 33 98 BRCA TCGA-BH-A0HP SCN11A SNP Missense_Mutation 3 38968358 G C 33 55 BRCA TCGA-BH-A0HP SMARCC1 SNP Missense_Mutation 3 47680259 C G 32 69 BRCA TCGA-BH-A0HP STAB1 SNP Silent 3 52547786 C T 19 41 BRCA TCGA-BH-A0HP TMEM155 SNP Silent 4 122682808 G A 33 65 BRCA TCGA-BH-A0HP PROM1 SNP Missense_Mutation 4 16010727 G C 45 56 BRCA TCGA-BH-A0HP STOX2 SNP Silent 4 184932148 G C 37 3 BRCA TCGA-BH-A0HP KIAA1239 SNP Missense_Mutation 4 37445636 G A 41 99 BRCA TCGA-BH-A0HP CHRNA9 SNP Silent 4 40351124 C T 29 65 BRCA TCGA-BH-A0HP BMP2K SNP Missense_Mutation 4 79831828 C G 29 49 BRCA TCGA-BH-A0HP WDFY3 SNP Missense_Mutation 4 85638146 C G 32 75 BRCA TCGA-BH-A0HP AFF1 SNP Missense_Mutation 4 87968288 C T 30 54 BRCA TCGA-BH-A0HP DSPP SNP Missense_Mutation 4 88537602 C T 32 61 BRCA TCGA-BH-A0HP HERC5 SNP Missense_Mutation 4 89388340 G A 45 78 BRCA TCGA-BH-A0HP DMXL1 SNP Missense_Mutation 5 118468832 G A 45 92 BRCA TCGA-BH-A0HP KDM3B SNP Missense_Mutation 5 137721882 G A 45 94 BRCA TCGA-BH-A0HP PCDHA5 SNP Silent 5 140202458 G A 39 21 BRCA TCGA-BH-A0HP TNIP1 SNP Missense_Mutation 5 150439923 C T 29 79 BRCA TCGA-BH-A0HP ITK SNP Missense_Mutation 5 156672782 C T 32 100 BRCA TCGA-BH-A0HP C1QTNF2 SNP Missense_Mutation 5 159776212 A T 15 90 BRCA TCGA-BH-A0HP SH3PXD2B SNP Silent 5 171777551 C T 32 60 BRCA TCGA-BH-A0HP SNCB SNP Missense_Mutation 5 176048277 C T 29 91 BRCA TCGA-BH-A0HP DROSHA SNP Missense_Mutation 5 31401613 C G 32 99 BRCA TCGA-BH-A0HP LIFR SNP Missense_Mutation 5 38493737 G A 45 73 BRCA TCGA-BH-A0HP OXCT1 SNP Missense_Mutation 5 41731843 C G 32 58 BRCA TCGA-BH-A0HP SREK1 SNP Silent 5 65474672 C T 32 50 BRCA TCGA-BH-A0HP SLC30A5 SNP Silent 5 68419174 G A 45 56 BRCA TCGA-BH-A0HP GRIK2 SNP Missense_Mutation 6 102124653 G A 45 87 BRCA TCGA-BH-A0HP SLC22A16 SNP Missense_Mutation 6 110763662 G A 45 58 BRCA TCGA-BH-A0HP TAAR9 SNP Nonsense_Mutation 6 132859522 C T 31 67 BRCA TCGA-BH-A0HP MDC1 SNP Nonsense_Mutation 6 30671702 G C 45 49 BRCA TCGA-BH-A0HP RIPK1 SNP Missense_Mutation 6 3085612 G T 34 53 BRCA TCGA-BH-A0HP TAP1 SNP Missense_Mutation 6 32816574 G T 41 77 BRCA TCGA-BH-A0HP POLH SNP Missense_Mutation 6 43550143 G C 45 63 BRCA TCGA-BH-A0HP PHIP SNP Missense_Mutation 6 79672892 C T 29 83 BRCA TCGA-BH-A0HP MUC12 SNP Missense_Mutation 7 100635483 C A 29 47 BRCA TCGA-BH-A0HP CDHR3 SNP Silent 7 105662855 C T 29 55 BRCA TCGA-BH-A0HP THSD7A SNP Missense_Mutation 7 11676040 C T 31 73 BRCA TCGA-BH-A0HP TTC26 SNP Missense_Mutation 7 138865859 G C 33 66 BRCA TCGA-BH-A0HP CNPY1 SNP Missense_Mutation 7 155301698 G A 40 73 BRCA TCGA-BH-A0HP HNRNPA2B1 SNP Missense_Mutation 7 26237271 C G 31 80 BRCA TCGA-BH-A0HP ABCA13 SNP Missense_Mutation 7 48427518 C T 32 84 BRCA TCGA-BH-A0HP ZNF736 SNP Missense_Mutation 7 63797334 G A 33 45 BRCA TCGA-BH-A0HP MAGI2 SNP Silent 7 77789382 G A 45 73 BRCA TCGA-BH-A0HP KRIT1 SNP Silent 7 91842614 G A 45 68 BRCA TCGA-BH-A0HP AP4M1 SNP Silent 7 99701112 C T 29 75 BRCA TCGA-BH-A0HP LRP12 SNP Silent 8 105503585 C T 32 63 BRCA TCGA-BH-A0HP ENPP2 SNP Silent 8 120598503 G C 47 61 BRCA TCGA-BH-A0HP ZHX1 SNP Nonsense_Mutation 8 124266322 G C 45 84 BRCA TCGA-BH-A0HP LRRC6 SNP Missense_Mutation 8 133637540 G C 40 54 BRCA TCGA-BH-A0HP FAM160B2 SNP Splice_site 8 21957402 G A 45 97 BRCA TCGA-BH-A0HP RGS20 SNP Silent 8 54852243 C T 19 38 BRCA TCGA-BH-A0HP TCEA1 SNP Missense_Mutation 8 54897032 C G 32 100 BRCA TCGA-BH-A0HP ZBTB10 SNP Missense_Mutation 8 81412521 C G 30 95 BRCA TCGA-BH-A0HP ORM2 SNP Missense_Mutation 9 117092822 G C 33 50 BRCA TCGA-BH-A0HP OR1L4 SNP Silent 9 125487177 G A 33 51 BRCA TCGA-BH-A0HP ADAMTS13 SNP Silent 9 136289592 C G 29 58 BRCA TCGA-BH-A0HP FAM166A DEL Frame_Shift_Del 9 140140154 G - 47 47 BRCA TCGA-BH-A0HP KIAA1432 SNP Silent 9 5762597 G A 33 68 BRCA TCGA-BH-A0HP SMC5 SNP Silent 9 72913049 G C 45 57 BRCA TCGA-BH-A0HQ ENSG00000234905 SNP Missense_Mutation 1 149286469 C G 22 53 BRCA TCGA-BH-A0HQ KIF21B SNP Missense_Mutation 1 200958025 C T 23 84 BRCA TCGA-BH-A0HQ SNRNP40 SNP Silent 1 31769548 G A 45 51 BRCA TCGA-BH-A0HQ VCL SNP Missense_Mutation 10 75843202 G T 38 97 BRCA TCGA-BH-A0HQ TBX3 SNP Missense_Mutation 12 115118782 G A 45 100 BRCA TCGA-BH-A0HQ NYNRIN SNP Silent 14 24884006 C T 19 9 BRCA TCGA-BH-A0HQ SFTA3 SNP Silent 14 36946266 G A 37 51 BRCA TCGA-BH-A0HQ RDH11 SNP Missense_Mutation 14 68157923 C T 20 89 BRCA TCGA-BH-A0HQ ADPGK SNP Missense_Mutation 15 73048722 T C 60 92 BRCA TCGA-BH-A0HQ SHCBP1 SNP Missense_Mutation 16 46617506 T G 61 81 BRCA TCGA-BH-A0HQ CDH3 SNP Silent 16 68714903 C T 21 42 BRCA TCGA-BH-A0HQ ZFHX3 SNP Nonsense_Mutation 16 72830109 G A 39 61 BRCA TCGA-BH-A0HQ HECW2 SNP Missense_Mutation 2 197081794 T C 52 91 BRCA TCGA-BH-A0HQ TMEM150A SNP Missense_Mutation 2 85826426 C T 17 49 BRCA TCGA-BH-A0HQ FER1L5 SNP Missense_Mutation 2 97312826 G A 38 43 BRCA TCGA-BH-A0HQ SYNDIG1 SNP Missense_Mutation 20 24524055 G A 38 41 BRCA TCGA-BH-A0HQ RUNX1 INS Splice_Site 21 36259138 - C 14 75 BRCA TCGA-BH-A0HQ PIWIL3 SNP Missense_Mutation 22 25158460 C T 21 64 BRCA TCGA-BH-A0HQ UPF3B SNP Missense_Mutation 23 118971905 G A 38 64 BRCA TCGA-BH-A0HQ MXRA5 SNP Missense_Mutation 23 3238811 G A 44 51 BRCA TCGA-BH-A0HQ IQCG SNP Silent 3 197670853 G A 38 26 BRCA TCGA-BH-A0HQ KIAA0922 SNP Missense_Mutation 4 154556719 C T 32 60 BRCA TCGA-BH-A0HQ MYB INS Frame_Shift_Ins 6 135511376 - CA 30 100 BRCA TCGA-BH-A0HQ HIST1H3G SNP Silent 6 26271388 G A 37 82 BRCA TCGA-BH-A0HQ COL11A2 SNP Silent 6 33147259 C T 27 19 BRCA TCGA-BH-A0HQ MLL3 DEL Frame_Shift_Del 7 151859396 C - 28 59 BRCA TCGA-BH-A0HQ CTSB SNP Missense_Mutation 8 11703257 C T 25 99 BRCA TCGA-BH-A0HQ TRIM14 SNP Nonsense_Mutation 9 100862246 G A 45 47 BRCA TCGA-BH-A0HQ AQP7 DEL Frame_Shift_Del 9 33387044 T - 49 48 BRCA TCGA-BH-A0HU OR6P1 SNP Silent 1 158532693 G C 42 48 BRCA TCGA-BH-A0HU FMN2 SNP Missense_Mutation 1 240371704 C A 30 80 BRCA TCGA-BH-A0HU INSL5 SNP Missense_Mutation 1 67266829 C A 17 49 BRCA TCGA-BH-A0HU MUC2 SNP Missense_Mutation 11 1090919 A C 6 51 BRCA TCGA-BH-A0HU PIWIL1 SNP Missense_Mutation 12 130827144 G A 43 91 BRCA TCGA-BH-A0HU TMEM30B DEL Frame_Shift_Del 14 61746982 GCGCGCA - 38 64 BRCA TCGA-BH-A0HU TMEM30B DEL Frame_Shift_Del 14 61746991 GGGTAGTTGTA - 39 93 BRCA TCGA-BH-A0HU SERPINA1 SNP Splice_Site 14 94845800 C T 18 87 BRCA TCGA-BH-A0HU GOLGA6L1 SNP Missense_Mutation 15 22742829 T G 49 51 BRCA TCGA-BH-A0HU AKAP13 SNP Silent 15 86123003 G A 39 0 BRCA TCGA-BH-A0HU MYH8 SNP Missense_Mutation 17 10303934 G A 38 61 BRCA TCGA-BH-A0HU SPATA22 SNP Missense_Mutation 17 3346557 C A 29 71 BRCA TCGA-BH-A0HU CAMTA2 SNP Silent 17 4876086 T G 59 50 BRCA TCGA-BH-A0HU ZNF443 SNP Missense_Mutation 19 12541421 T C 51 78 BRCA TCGA-BH-A0HU ZNF420 SNP Missense_Mutation 19 37619086 A G 3 73 BRCA TCGA-BH-A0HU ZNF606 SNP Missense_Mutation 19 58489891 C G 32 53 BRCA TCGA-BH-A0HU ZNF324 SNP Silent 19 58983206 C T 27 25 BRCA TCGA-BH-A0HU RIF1 SNP Missense_Mutation 2 152320145 A T 13 59 BRCA TCGA-BH-A0HU ABCB11 SNP Missense_Mutation 2 169842673 C T 23 88 BRCA TCGA-BH-A0HU CHRNA1 SNP Missense_Mutation 2 175624061 G T 48 100 BRCA TCGA-BH-A0HU ASIC4 SNP Silent 2 220402756 T C 52 70 BRCA TCGA-BH-A0HU EIF5B SNP Missense_Mutation 2 99993052 C T 31 65 BRCA TCGA-BH-A0HU CXorf40A SNP Missense_Mutation 23 148627391 T G 54 66 BRCA TCGA-BH-A0HU GPKOW SNP Missense_Mutation 23 48972279 T C 60 60 BRCA TCGA-BH-A0HU PIK3CA DEL In_Frame_Del 3 178916929 GGCAACCGT - 35 97 BRCA TCGA-BH-A0HU DCHS2 SNP Missense_Mutation 4 155180776 T A 50 84 BRCA TCGA-BH-A0HU CYP4V2 DEL Frame_Shift_Del 4 187113181 GGACG - 39 38 BRCA TCGA-BH-A0HU TADA2B DEL In_Frame_Del 4 7056249 TGAAGCGCAAGA - 55 50 BRCA TCGA-BH-A0HU ZNF608 SNP Silent 5 123982737 G A 34 58 BRCA TCGA-BH-A0HU POC5 SNP Missense_Mutation 5 74998503 C A 28 49 BRCA TCGA-BH-A0HU COL19A1 SNP Missense_Mutation 6 70639432 G A 40 97 BRCA TCGA-BH-A0HU MDN1 SNP Missense_Mutation 6 90402292 C G 26 46 BRCA TCGA-BH-A0HU TRBV5-6 SNP Silent 7 142131461 G A 40 50 BRCA TCGA-BH-A0HU RP1L1 SNP Silent 8 10466220 G T 46 48 BRCA TCGA-BH-A0HU TSTA3 SNP Missense_Mutation 8 144696871 C T 27 43 BRCA TCGA-BH-A0HU NR4A3 SNP Missense_Mutation 9 102626006 G A 37 69 BRCA TCGA-BH-A0HU HSPA5 SNP Silent 9 128001807 G A 43 47 BRCA TCGA-BH-A0HW FAM63A SNP Missense_Mutation 1 150973769 T A 56 62 BRCA TCGA-BH-A0HW CRTC2 SNP Missense_Mutation 1 153925831 G C 33 76 BRCA TCGA-BH-A0HW OR10K2 SNP Silent 1 158390579 C T 25 52 BRCA TCGA-BH-A0HW ARID1A SNP Nonsense_Mutation 1 27087880 C T 21 97 BRCA TCGA-BH-A0HW NODAL DEL Frame_Shift_Del 10 72195490 A - 5 63 BRCA TCGA-BH-A0HW CEP55 INS Frame_Shift_Ins 10 95287850 - C 14 31 BRCA TCGA-BH-A0HW CAPRIN1 SNP Missense_Mutation 11 34093289 A G 14 90 BRCA TCGA-BH-A0HW FOLH1 SNP Missense_Mutation 11 49192781 T A 62 78 BRCA TCGA-BH-A0HW TTC9C SNP Missense_Mutation 11 62505789 A T 10 74 BRCA TCGA-BH-A0HW DNAJC22 SNP Missense_Mutation 12 49742746 G A 38 93 BRCA TCGA-BH-A0HW KRT81 SNP Nonsense_Mutation 12 52681780 C T 18 82 BRCA TCGA-BH-A0HW LOC400352 DEL Frame_Shift_Del 15 32792075 G - 48 48 BRCA TCGA-BH-A0HW RAD51 SNP Missense_Mutation 15 41021711 T G 55 93 BRCA TCGA-BH-A0HW SLC16A13 SNP Missense_Mutation 17 6940081 C T 26 57 BRCA TCGA-BH-A0HW LRP3 SNP Missense_Mutation 19 33693784 C T 19 68 BRCA TCGA-BH-A0HW LRP3 DEL Frame_Shift_Del 19 33695733 G - 35 80 BRCA TCGA-BH-A0HW CATSPERG SNP Missense_Mutation 19 38861256 C T 23 58 BRCA TCGA-BH-A0HW ZSCAN5B SNP Missense_Mutation 19 56703268 C T 27 56 BRCA TCGA-BH-A0HW ZNF135 INS Frame_Shift_Ins 19 58578672 - A 29 50 BRCA TCGA-BH-A0HW ELAVL1 SNP Missense_Mutation 19 8056669 C T 31 75 BRCA TCGA-BH-A0HW WNT6 SNP Missense_Mutation 2 219735910 G A 38 97 BRCA TCGA-BH-A0HW PID1 SNP Missense_Mutation 2 229890461 C T 27 74 BRCA TCGA-BH-A0HW KHK DEL Frame_Shift_Del 2 27320451 C - 30 85 BRCA TCGA-BH-A0HW PORCN SNP Missense_Mutation 23 48378800 A T 11 73 BRCA TCGA-BH-A0HW RPS4X SNP Missense_Mutation 23 71493102 T G 63 83 BRCA TCGA-BH-A0HW MECOM SNP Silent 3 168813030 G A 46 82 BRCA TCGA-BH-A0HW MUC4 SNP Missense_Mutation 3 195512080 C T 22 53 BRCA TCGA-BH-A0HW LOC100128827 DEL Frame_Shift_Del 3 197837548 G - 35 51 BRCA TCGA-BH-A0HW EOMES SNP Missense_Mutation 3 27761733 G A 38 84 BRCA TCGA-BH-A0HW WHSC2 DEL Frame_Shift_Del 4 1987550 C - 18 63 BRCA TCGA-BH-A0HW PCDHA6 SNP Silent 5 140209681 C T 28 60 BRCA TCGA-BH-A0HW CNOT8 SNP Missense_Mutation 5 154254920 C T 26 66 BRCA TCGA-BH-A0HW SLC9A3 DEL Frame_Shift_Del 5 475689 G - 39 34 BRCA TCGA-BH-A0HW WBSCR28 SNP Silent 7 73279580 C T 26 52 BRCA TCGA-BH-A0HW TACC1 SNP Missense_Mutation 8 38696043 G A 39 68 BRCA TCGA-BH-A0HW GDF6 SNP Missense_Mutation 8 97172770 T A 50 58 BRCA TCGA-BH-A0HW GABBR2 SNP Silent 9 101052989 G A 40 55 BRCA TCGA-BH-A0HW IFNB1 SNP Missense_Mutation 9 21077643 C T 27 47 BRCA TCGA-BH-A0HW PTPRD SNP Missense_Mutation 9 8486284 G T 43 99 BRCA TCGA-BH-A0HX NUP210L SNP Missense_Mutation 1 153991518 G C 42 79 BRCA TCGA-BH-A0HX FMO3 SNP Splice_Site 1 171086238 A T 7 91 BRCA TCGA-BH-A0HX HMCN1 SNP Missense_Mutation 1 185964013 C T 21 69 BRCA TCGA-BH-A0HX HMCN1 SNP Missense_Mutation 1 185985185 C A 22 99 BRCA TCGA-BH-A0HX USH2A SNP Missense_Mutation 1 216390881 C G 17 91 BRCA TCGA-BH-A0HX ESRRG SNP Silent 1 216737742 C T 25 69 BRCA TCGA-BH-A0HX MACF1 SNP Missense_Mutation 1 39888058 G C 33 100 BRCA TCGA-BH-A0HX ASB17 SNP Silent 1 76387978 C T 32 75 BRCA TCGA-BH-A0HX IDI1 SNP Missense_Mutation 10 1087317 G T 43 100 BRCA TCGA-BH-A0HX FAM171A1 INS Frame_Shift_Ins 10 15256542 - TG 30 82 BRCA TCGA-BH-A0HX PRKCQ SNP Missense_Mutation 10 6472861 C T 22 97 BRCA TCGA-BH-A0HX SSRP1 SNP Silent 11 57102000 G A 42 50 BRCA TCGA-BH-A0HX SHANK2 SNP Missense_Mutation 11 70331861 C T 19 100 BRCA TCGA-BH-A0HX LOC341378 SNP Missense_Mutation 12 106565245 C T 27 58 BRCA TCGA-BH-A0HX EP400 SNP Silent 12 132529374 C T 19 51 BRCA TCGA-BH-A0HX MCRS1 SNP Missense_Mutation 12 49956786 G C 48 71 BRCA TCGA-BH-A0HX LOC100288809 SNP Missense_Mutation 12 53201094 G A 42 51 BRCA TCGA-BH-A0HX AAAS SNP Missense_Mutation 12 53702291 C T 30 81 BRCA TCGA-BH-A0HX PTPN6 SNP Silent 12 7069339 G A 36 85 BRCA TCGA-BH-A0HX ERCC5 SNP Missense_Mutation 13 103504559 T G 50 59 BRCA TCGA-BH-A0HX TTC5 SNP Missense_Mutation 14 20764583 G C 33 79 BRCA TCGA-BH-A0HX PRMT5 SNP Missense_Mutation 14 23391766 G A 41 74 BRCA TCGA-BH-A0HX MYH7 SNP Missense_Mutation 14 23886884 G A 42 99 BRCA TCGA-BH-A0HX LRRC16B SNP Silent 14 24525586 C T 18 65 BRCA TCGA-BH-A0HX UACA SNP Splice_site 15 70949465 C A 18 98 BRCA TCGA-BH-A0HX SPSB3 SNP Missense_Mutation 16 1827142 G C 37 61 BRCA TCGA-BH-A0HX ATXN2L SNP Missense_Mutation 16 28842013 G A 42 74 BRCA TCGA-BH-A0HX HAS3 SNP Missense_Mutation 16 69143684 A G 10 79 BRCA TCGA-BH-A0HX CACNA1G SNP Missense_Mutation 17 48694930 G A 37 99 BRCA TCGA-BH-A0HX HELZ SNP Silent 17 65074482 C T 28 81 BRCA TCGA-BH-A0HX TP53 SNP Missense_Mutation 17 7578525 G C 42 63 BRCA TCGA-BH-A0HX ASXL3 SNP Silent 18 31325065 G C 38 45 BRCA TCGA-BH-A0HX CNDP1 SNP Missense_Mutation 18 72244205 C G 32 54 BRCA TCGA-BH-A0HX ZNF540 SNP Missense_Mutation 19 38103478 C A 29 74 BRCA TCGA-BH-A0HX AP2A1 SNP Nonsense_Mutation 19 50295238 C T 31 72 BRCA TCGA-BH-A0HX ZNF320 SNP Missense_Mutation 19 53384808 A G 8 78 BRCA TCGA-BH-A0HX PLA2R1 SNP Missense_Mutation 2 160885378 T C 49 63 BRCA TCGA-BH-A0HX MYT1L SNP Silent 2 1812867 G A 45 56 BRCA TCGA-BH-A0HX TLR7 SNP Missense_Mutation 23 12905642 G A 44 76 BRCA TCGA-BH-A0HX PPEF1 SNP Missense_Mutation 23 18822016 G C 45 66 BRCA TCGA-BH-A0HX RPGR SNP Splice_Site 23 38160625 C A 32 95 BRCA TCGA-BH-A0HX TNIK SNP Silent 3 170819279 G T 43 47 BRCA TCGA-BH-A0HX GADL1 SNP Missense_Mutation 3 30769808 T A 50 68 BRCA TCGA-BH-A0HX ALPK1 SNP Missense_Mutation 4 113333139 C T 22 93 BRCA TCGA-BH-A0HX FBXO8 SNP Silent 4 175184103 G T 41 61 BRCA TCGA-BH-A0HX LOC644578 SNP Missense_Mutation 4 64216347 G A 40 51 BRCA TCGA-BH-A0HX PCDHB6 SNP Missense_Mutation 5 140530844 C G 24 43 BRCA TCGA-BH-A0HX PCDHGB4 SNP Silent 5 140769020 G T 46 64 BRCA TCGA-BH-A0HX FAT2 SNP Silent 5 150947878 C T 21 54 BRCA TCGA-BH-A0HX EGFLAM SNP Missense_Mutation 5 38407032 C G 22 52 BRCA TCGA-BH-A0HX SEMA5A SNP Missense_Mutation 5 9154711 T A 54 85 BRCA TCGA-BH-A0HX UNC5D SNP Splice_Site 8 35563480 G T 36 86 BRCA TCGA-BH-A0HY RBM8A SNP Missense_Mutation 1 145507682 G A 33 94 BRCA TCGA-BH-A0HY CGN SNP Nonsense_Mutation 1 151509266 C T 27 70 BRCA TCGA-BH-A0HY PKLR SNP Missense_Mutation 1 155265012 C T 27 65 BRCA TCGA-BH-A0HY GORAB SNP Missense_Mutation 1 170521254 C T 19 96 BRCA TCGA-BH-A0HY LBR SNP Missense_Mutation 1 225609886 G A 43 83 BRCA TCGA-BH-A0HY OR2L1P SNP Missense_Mutation 1 248154135 C T 19 53 BRCA TCGA-BH-A0HY OR2L5 SNP Silent 1 248185375 A G 16 24 BRCA TCGA-BH-A0HY NUP160 SNP Missense_Mutation 11 47861966 C A 18 46 BRCA TCGA-BH-A0HY OR4C16 SNP Missense_Mutation 11 55340113 T A 51 63 BRCA TCGA-BH-A0HY PKP2 SNP Missense_Mutation 12 32955486 G A 39 82 BRCA TCGA-BH-A0HY SMUG1 SNP Splice_site 12 54577726 T C 51 52 BRCA TCGA-BH-A0HY CHD4 SNP Silent 12 6697539 G A 42 67 BRCA TCGA-BH-A0HY TSPAN8 SNP Silent 12 71519153 C T 17 51 BRCA TCGA-BH-A0HY HTR2A SNP Missense_Mutation 13 47466593 T C 59 93 BRCA TCGA-BH-A0HY DCAF11 SNP Missense_Mutation 14 24586486 C T 22 96 BRCA TCGA-BH-A0HY AKAP6 SNP Missense_Mutation 14 33004940 C A 32 71 BRCA TCGA-BH-A0HY MYH11 SNP Missense_Mutation 16 15853452 G T 34 100 BRCA TCGA-BH-A0HY OSBPL7 SNP Missense_Mutation 17 45895952 C T 18 80 BRCA TCGA-BH-A0HY ALPK2 SNP Missense_Mutation 18 56203182 C G 32 64 BRCA TCGA-BH-A0HY CD226 SNP Missense_Mutation 18 67562982 C T 27 50 BRCA TCGA-BH-A0HY QPCTL SNP Silent 19 46206220 G A 39 28 BRCA TCGA-BH-A0HY LILRA2 SNP Missense_Mutation 19 55086420 C T 31 50 BRCA TCGA-BH-A0HY SAFB2 SNP Missense_Mutation 19 5587936 C T 27 48 BRCA TCGA-BH-A0HY HCN2 DEL In_Frame_Del 19 615906 TGG - 51 85 BRCA TCGA-BH-A0HY HECW2 SNP Missense_Mutation 2 197080599 C A 25 72 BRCA TCGA-BH-A0HY SF3B1 SNP Missense_Mutation 2 198266542 T C 49 93 BRCA TCGA-BH-A0HY C2orf47 SNP Missense_Mutation 2 200820884 G T 43 99 BRCA TCGA-BH-A0HY EIF2B4 SNP Silent 2 27591877 G A 35 49 BRCA TCGA-BH-A0HY SLC4A1AP SNP Nonsense_Mutation 2 27910885 C A 29 76 BRCA TCGA-BH-A0HY REG1A SNP Splice_site 2 79349250 A C 3 56 BRCA TCGA-BH-A0HY FAM217B SNP Silent 20 58519658 C T 26 57 BRCA TCGA-BH-A0HY RRP1 SNP Missense_Mutation 21 45213278 T G 62 57 BRCA TCGA-BH-A0HY TRAPPC10 SNP Missense_Mutation 21 45513998 G A 33 76 BRCA TCGA-BH-A0HY TSSK2 SNP Missense_Mutation 22 19119862 C A 26 67 BRCA TCGA-BH-A0HY ODZ1 SNP Silent 23 123615597 G A 36 67 BRCA TCGA-BH-A0HY ZNF280C SNP Missense_Mutation 23 129349834 T C 64 57 BRCA TCGA-BH-A0HY SAGE1 SNP Missense_Mutation 23 134990730 T G 61 49 BRCA TCGA-BH-A0HY CXorf66 SNP Silent 23 139038667 T C 51 50 BRCA TCGA-BH-A0HY SLC9A7 SNP Missense_Mutation 23 46491044 C T 31 76 BRCA TCGA-BH-A0HY SSX1 DNP Missense_Mutation 23 48117208 TC AT 54 59 BRCA TCGA-BH-A0HY ACPP SNP Missense_Mutation 3 132047117 C T 31 71 BRCA TCGA-BH-A0HY SERPINI1 SNP Missense_Mutation 3 167510446 G T 48 53 BRCA TCGA-BH-A0HY TBC1D5 SNP Nonsense_Mutation 3 17415993 C T 18 98 BRCA TCGA-BH-A0HY FILIP1L SNP Missense_Mutation 3 99567698 G A 40 89 BRCA TCGA-BH-A0HY PPIP5K2 SNP Silent 5 102502945 G A 33 59 BRCA TCGA-BH-A0HY PCDHA4 SNP Silent 5 140187582 C T 19 49 BRCA TCGA-BH-A0HY GEMIN5 SNP Splice_Site 5 154282237 C A 24 97 BRCA TCGA-BH-A0HY NSD1 SNP Silent 5 176721812 G A 33 51 BRCA TCGA-BH-A0HY CDH18 SNP Missense_Mutation 5 19483502 A C 6 74 BRCA TCGA-BH-A0HY RICTOR SNP Missense_Mutation 5 39002728 C T 28 98 BRCA TCGA-BH-A0HY SLC38A9 SNP Silent 5 54931405 A G 3 46 BRCA TCGA-BH-A0HY TPPP SNP Splice_site 5 677867 G C 45 73 BRCA TCGA-BH-A0HY UBD SNP Silent 6 29523762 A G 5 51 BRCA TCGA-BH-A0HY BACH2 SNP Missense_Mutation 6 90660896 T G 58 67 BRCA TCGA-BH-A0HY ABCA13 SNP Silent 7 48284230 A T 6 45 BRCA TCGA-BH-A0HY STYXL1 SNP Missense_Mutation 7 75630222 C T 31 47 BRCA TCGA-BH-A0HY ZFHX4 SNP Missense_Mutation 8 77767190 C T 23 99 BRCA TCGA-BH-A0HY MMP16 SNP Missense_Mutation 8 89086840 G T 33 67 BRCA TCGA-BH-A0HY MAMDC2 SNP Splice_Site 9 72723399 G T 44 97 BRCA TCGA-BH-A0RX KIAA1324 SNP Missense_Mutation 1 109727733 C T 19 97 BRCA TCGA-BH-A0RX POLR3C SNP Missense_Mutation 1 145608467 C T 23 94 BRCA TCGA-BH-A0RX VANGL2 SNP Missense_Mutation 1 160389104 C T 23 93 BRCA TCGA-BH-A0RX TUBGCP2 SNP Missense_Mutation 10 135099043 G T 44 51 BRCA TCGA-BH-A0RX TACR2 SNP Missense_Mutation 10 71175895 C T 23 47 BRCA TCGA-BH-A0RX MUC6 DEL Frame_Shift_Del 11 1019367 GC - 42 55 BRCA TCGA-BH-A0RX CHRM4 SNP Silent 11 46406905 C T 31 59 BRCA TCGA-BH-A0RX HELB SNP Missense_Mutation 12 66717817 G T 41 57 BRCA TCGA-BH-A0RX TFDP1 SNP Missense_Mutation 13 114292199 G T 35 69 BRCA TCGA-BH-A0RX PCNX SNP Missense_Mutation 14 71543011 G A 48 81 BRCA TCGA-BH-A0RX ERCC4 SNP Missense_Mutation 16 14029554 C T 31 95 BRCA TCGA-BH-A0RX SHISA6 SNP Silent 17 11461156 C A 30 64 BRCA TCGA-BH-A0RX C17orf102 DNP Missense_Mutation 17 32906191 CT TA 32 54 BRCA TCGA-BH-A0RX ARHGAP27 SNP Missense_Mutation 17 43473379 A G 11 58 BRCA TCGA-BH-A0RX CYGB SNP Silent 17 74527737 G A 45 71 BRCA TCGA-BH-A0RX TP53 SNP Nonsense_Mutation 17 7574003 G A 39 57 BRCA TCGA-BH-A0RX FAM117B DEL Frame_Shift_Del 2 203591033 AAAG - 13 86 BRCA TCGA-BH-A0RX NCAM2 SNP Missense_Mutation 21 22696711 G A 34 73 BRCA TCGA-BH-A0RX DZIP1L SNP Missense_Mutation 3 137813715 G A 38 58 BRCA TCGA-BH-A0RX ZIC4 SNP Silent 3 147108957 C T 27 54 BRCA TCGA-BH-A0RX FAM53C DEL Frame_Shift_Del 5 137681156 GGCGACC - 47 71 BRCA TCGA-BH-A0RX ITPR3 SNP Silent 6 33655053 G A 39 23 BRCA TCGA-BH-A0RX CARD11 SNP Missense_Mutation 7 2987388 G A 40 67 BRCA TCGA-BH-A0RX SEMA3E SNP Missense_Mutation 7 82997122 G A 37 76 BRCA TCGA-BH-A0RX GRM3 SNP Silent 7 86469059 C T 19 43 BRCA TCGA-BH-A0RX ST18 SNP Missense_Mutation 8 53038615 C T 21 79 BRCA TCGA-BH-A0RX C9orf144B SNP Missense_Mutation 9 34725432 C T 27 59 BRCA TCGA-BH-A0RX C9orf144B SNP Missense_Mutation 9 34725438 A G 5 59 BRCA TCGA-BH-A0W3 MMRN2 SNP Silent 10 88703812 G A 47 59 BRCA TCGA-BH-A0W3 KCNK4 SNP Missense_Mutation 11 64064601 T A 51 58 BRCA TCGA-BH-A0W3 PDE2A SNP Splice_Site 11 72290428 C G 24 82 BRCA TCGA-BH-A0W3 PDE2A SNP Silent 11 72290581 C T 30 61 BRCA TCGA-BH-A0W3 PDE2A SNP Missense_Mutation 11 72290595 C T 29 93 BRCA TCGA-BH-A0W3 TMEM120B SNP Missense_Mutation 12 122212588 G A 39 99 BRCA TCGA-BH-A0W3 AICDA SNP Missense_Mutation 12 8759472 G T 33 94 BRCA TCGA-BH-A0W3 ELK3 SNP Missense_Mutation 12 96653588 C A 23 98 BRCA TCGA-BH-A0W3 MYO16 SNP Missense_Mutation 13 109617223 G T 46 58 BRCA TCGA-BH-A0W3 LRCH1 SNP Missense_Mutation 13 47279264 G A 34 57 BRCA TCGA-BH-A0W3 LMO7 SNP Silent 13 76370783 A G 8 41 BRCA TCGA-BH-A0W3 GOLGA8F SNP Missense_Mutation 15 28630358 A C 11 55 BRCA TCGA-BH-A0W3 CATSPER2 SNP Missense_Mutation 15 43939311 G C 33 45 BRCA TCGA-BH-A0W3 COQ9 DEL Frame_Shift_Del 16 57493549 T - 54 57 BRCA TCGA-BH-A0W3 ELAC2 SNP Silent 17 12901771 G A 39 91 BRCA TCGA-BH-A0W3 SCN2A SNP Silent 2 166245338 C T 19 49 BRCA TCGA-BH-A0W3 MYH7B SNP Silent 20 33568852 C T 21 51 BRCA TCGA-BH-A0W3 CP SNP Silent 3 148930395 G A 35 56 BRCA TCGA-BH-A0W3 PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-BH-A0W3 SPATA5 SNP Silent 4 123850227 T C 55 54 BRCA TCGA-BH-A0W3 FSTL4 SNP Missense_Mutation 5 132585181 A T 10 88 BRCA TCGA-BH-A0W3 WEE2 SNP Silent 7 141427142 A T 7 48 BRCA TCGA-BH-A0W3 ZKSCAN1 SNP Missense_Mutation 7 99631717 C G 30 60 BRCA TCGA-BH-A0W4 VCAM1 SNP Splice_Site 1 101196752 A G 7 76 BRCA TCGA-BH-A0W4 CDK11A SNP Missense_Mutation 1 1653040 T A 56 52 BRCA TCGA-BH-A0W4 TCEB3 SNP Missense_Mutation 1 24077576 A G 4 51 BRCA TCGA-BH-A0W4 ZRANB1 SNP Missense_Mutation 10 126655277 A T 12 93 BRCA TCGA-BH-A0W4 PPYR1 SNP Missense_Mutation 10 47087301 C G 22 95 BRCA TCGA-BH-A0W4 PCDH15 SNP Nonsense_Mutation 10 55626527 C A 30 100 BRCA TCGA-BH-A0W4 C11orf40 SNP Missense_Mutation 11 4594539 A G 14 58 BRCA TCGA-BH-A0W4 C11orf84 SNP Missense_Mutation 11 63585750 G A 37 77 BRCA TCGA-BH-A0W4 EED SNP Missense_Mutation 11 85977150 T C 49 90 BRCA TCGA-BH-A0W4 KIAA1033 SNP Nonsense_Mutation 12 105543489 C T 31 68 BRCA TCGA-BH-A0W4 CDKN1B DEL Frame_Shift_Del 12 12870900 CG - 23 64 BRCA TCGA-BH-A0W4 POLE SNP Missense_Mutation 12 133250202 C T 32 100 BRCA TCGA-BH-A0W4 AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-BH-A0W4 GOLGA6L2 SNP Missense_Mutation 15 23685275 C T 17 50 BRCA TCGA-BH-A0W4 CORO2B SNP Missense_Mutation 15 69003905 G T 43 100 BRCA TCGA-BH-A0W4 ZNF592 DEL Frame_Shift_Del 15 85325994 A - 8 74 BRCA TCGA-BH-A0W4 CTCF SNP Missense_Mutation 16 67645919 C T 31 100 BRCA TCGA-BH-A0W4 EFTUD2 SNP Missense_Mutation 17 42964087 C A 30 75 BRCA TCGA-BH-A0W4 GNA15 SNP Silent 19 3151786 C G 21 61 BRCA TCGA-BH-A0W4 OR7D2 SNP Silent 19 9296535 C T 29 47 BRCA TCGA-BH-A0W4 ANO7 SNP Silent 2 242155637 C T 19 40 BRCA TCGA-BH-A0W4 HLCS SNP Missense_Mutation 21 38308910 C T 31 53 BRCA TCGA-BH-A0W4 TAF1 SNP Missense_Mutation 23 70598836 C T 30 97 BRCA TCGA-BH-A0W4 CHCHD6 SNP Missense_Mutation 3 126445927 G A 45 72 BRCA TCGA-BH-A0W4 LEPREL1 SNP Missense_Mutation 3 189692391 C T 19 83 BRCA TCGA-BH-A0W4 ITPR1 SNP Missense_Mutation 3 4726865 A G 11 91 BRCA TCGA-BH-A0W4 NPY1R SNP Missense_Mutation 4 164247028 T G 49 79 BRCA TCGA-BH-A0W4 APBB3 SNP Missense_Mutation 5 139939900 T C 49 91 BRCA TCGA-BH-A0W4 DAB2 SNP Missense_Mutation 5 39394418 G A 33 91 BRCA TCGA-BH-A0W4 MET SNP Missense_Mutation 7 116371755 C G 27 65 BRCA TCGA-BH-A0W4 PRKAG2 SNP Missense_Mutation 7 151573642 C T 23 55 BRCA TCGA-BH-A0W5 ZP4 SNP Missense_Mutation 1 238053448 C A 32 58 BRCA TCGA-BH-A0W5 MMACHC SNP Missense_Mutation 1 45966053 T C 51 55 BRCA TCGA-BH-A0W5 PTPN5 SNP Missense_Mutation 11 18764029 G A 44 53 BRCA TCGA-BH-A0W5 APLNR SNP Missense_Mutation 11 57003835 G A 44 55 BRCA TCGA-BH-A0W5 RTN4RL2 SNP Missense_Mutation 11 57235426 A C 6 77 BRCA TCGA-BH-A0W5 ANO4 SNP Missense_Mutation 12 101505394 G A 46 100 BRCA TCGA-BH-A0W5 HNF1A SNP Missense_Mutation 12 121431482 G A 37 95 BRCA TCGA-BH-A0W5 TRIP11 SNP Missense_Mutation 14 92505990 G C 47 100 BRCA TCGA-BH-A0W5 LARP6 SNP Silent 15 71125333 G A 40 39 BRCA TCGA-BH-A0W5 KIFC3 DEL In_Frame_Del 16 57794309 TTC - 60 86 BRCA TCGA-BH-A0W5 CTCF SNP Missense_Mutation 16 67645923 A C 6 91 BRCA TCGA-BH-A0W5 SLC35G3 SNP Missense_Mutation 17 33520540 C T 27 53 BRCA TCGA-BH-A0W5 CHAF1A SNP Missense_Mutation 19 4429539 A G 14 90 BRCA TCGA-BH-A0W5 SCN9A SNP Missense_Mutation 2 167159635 A G 16 62 BRCA TCGA-BH-A0W5 ELF4 SNP Silent 23 129206310 G A 39 37 BRCA TCGA-BH-A0W5 MAGEB4 SNP Missense_Mutation 23 30261121 C A 26 51 BRCA TCGA-BH-A0W5 SLITRK3 SNP Missense_Mutation 3 164908518 A G 16 91 BRCA TCGA-BH-A0W5 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A0W5 PPARGC1B SNP Missense_Mutation 5 149216402 G A 34 75 BRCA TCGA-BH-A0W5 MAP3K1 SNP Nonsense_Mutation 5 56177500 A T 3 58 BRCA TCGA-BH-A0W5 MAP3K1 DEL Frame_Shift_Del 5 56178253 C - 30 56 BRCA TCGA-BH-A0W5 NKAPL SNP Missense_Mutation 6 28227597 G A 37 83 BRCA TCGA-BH-A0W5 STK19 SNP Missense_Mutation 6 31939963 C G 27 54 BRCA TCGA-BH-A0W5 RPL10A SNP Silent 6 35436736 G A 39 48 BRCA TCGA-BH-A0W5 MUC17 SNP Missense_Mutation 7 100677967 C G 25 67 BRCA TCGA-BH-A0W5 SSNA1 SNP Missense_Mutation 9 140083619 G A 33 91 BRCA TCGA-BH-A0W7 SASS6 SNP Missense_Mutation 1 100598368 C G 29 77 BRCA TCGA-BH-A0W7 VPS13D SNP Missense_Mutation 1 12374365 C G 29 96 BRCA TCGA-BH-A0W7 LOC440563 SNP Missense_Mutation 1 13183034 C A 30 52 BRCA TCGA-BH-A0W7 HIST2H2AC SNP Silent 1 149858776 C G 30 60 BRCA TCGA-BH-A0W7 RPTN SNP Silent 1 152130351 C G 29 54 BRCA TCGA-BH-A0W7 GATAD2B SNP Missense_Mutation 1 153785831 C G 32 62 BRCA TCGA-BH-A0W7 KIFAP3 SNP Splice_Site 1 170008430 C G 32 75 BRCA TCGA-BH-A0W7 OR2L8 SNP Missense_Mutation 1 248112192 C A 29 54 BRCA TCGA-BH-A0W7 LRRC41 SNP Silent 1 46763262 C G 29 63 BRCA TCGA-BH-A0W7 SPATA6 SNP Missense_Mutation 1 48865165 G A 45 87 BRCA TCGA-BH-A0W7 ICMT SNP Missense_Mutation 1 6292039 G C 33 66 BRCA TCGA-BH-A0W7 ALG6 SNP Missense_Mutation 1 63862213 T G 61 89 BRCA TCGA-BH-A0W7 ABCC2 SNP Missense_Mutation 10 101567200 G C 33 53 BRCA TCGA-BH-A0W7 FAM208B SNP Nonsense_Mutation 10 5798685 C G 29 63 BRCA TCGA-BH-A0W7 SFMBT2 SNP Missense_Mutation 10 7217979 A G 7 90 BRCA TCGA-BH-A0W7 NUDT13 SNP Silent 10 74890577 C T 32 58 BRCA TCGA-BH-A0W7 PDE6C SNP Missense_Mutation 10 95380536 G A 45 86 BRCA TCGA-BH-A0W7 TM9SF3 SNP Silent 10 98303890 G A 45 84 BRCA TCGA-BH-A0W7 TRPC6 SNP Missense_Mutation 11 101324393 C T 29 100 BRCA TCGA-BH-A0W7 NXPE1 SNP Missense_Mutation 11 114401498 C G 32 53 BRCA TCGA-BH-A0W7 BTBD10 SNP Missense_Mutation 11 13443293 C T 31 98 BRCA TCGA-BH-A0W7 OR52K1 SNP Missense_Mutation 11 4510827 C G 29 51 BRCA TCGA-BH-A0W7 OR5D14 SNP Missense_Mutation 11 55563592 C G 32 45 BRCA TCGA-BH-A0W7 AHNAK SNP Missense_Mutation 11 62287266 C T 29 77 BRCA TCGA-BH-A0W7 KIAA1731 SNP Missense_Mutation 11 93431181 G C 45 63 BRCA TCGA-BH-A0W7 AMOTL1 SNP Silent 11 94501722 G A 45 57 BRCA TCGA-BH-A0W7 AP2A2 SNP Missense_Mutation 11 986843 G A 37 93 BRCA TCGA-BH-A0W7 KIAA1033 SNP Missense_Mutation 12 105557985 G A 33 76 BRCA TCGA-BH-A0W7 HNF1A SNP Missense_Mutation 12 121426669 G T 36 54 BRCA TCGA-BH-A0W7 GPR133 SNP Silent 12 131476808 C T 29 54 BRCA TCGA-BH-A0W7 SLCO1B3 SNP Missense_Mutation 12 21054322 G C 45 86 BRCA TCGA-BH-A0W7 BICD1 SNP Silent 12 32491861 C T 29 83 BRCA TCGA-BH-A0W7 ALG10B SNP Missense_Mutation 12 38712174 A C 12 69 BRCA TCGA-BH-A0W7 KCNA5 SNP Silent 12 5155077 C T 29 55 BRCA TCGA-BH-A0W7 KRT72 SNP Missense_Mutation 12 52992731 C T 30 79 BRCA TCGA-BH-A0W7 ESPL1 SNP Missense_Mutation 12 53662952 G C 41 65 BRCA TCGA-BH-A0W7 ERBB3 SNP Missense_Mutation 12 56490901 C G 32 68 BRCA TCGA-BH-A0W7 ESYT1 SNP Missense_Mutation 12 56531365 C T 29 81 BRCA TCGA-BH-A0W7 HMGA2 SNP Missense_Mutation 12 66308905 C T 29 58 BRCA TCGA-BH-A0W7 TMBIM4 SNP Missense_Mutation 12 66563728 C G 26 77 BRCA TCGA-BH-A0W7 LGR5 SNP Missense_Mutation 12 71976250 G C 45 96 BRCA TCGA-BH-A0W7 TRHDE SNP Missense_Mutation 12 73012710 C G 29 63 BRCA TCGA-BH-A0W7 OTOGL SNP Nonsense_Mutation 12 80650138 C T 29 80 BRCA TCGA-BH-A0W7 OTOGL SNP Missense_Mutation 12 80650216 C A 30 65 BRCA TCGA-BH-A0W7 HSPH1 SNP Missense_Mutation 13 31719870 C G 32 66 BRCA TCGA-BH-A0W7 OR4K15 SNP Missense_Mutation 14 20443846 C A 20 50 BRCA TCGA-BH-A0W7 CHD8 SNP Silent 14 21863271 C A 29 57 BRCA TCGA-BH-A0W7 PCNX SNP Missense_Mutation 14 71492886 G C 46 100 BRCA TCGA-BH-A0W7 SERPINA12 SNP Silent 14 94964318 G A 45 50 BRCA TCGA-BH-A0W7 GABRA5 SNP Silent 15 27188366 C T 29 48 BRCA TCGA-BH-A0W7 RYR3 SNP Silent 15 33952547 G A 45 63 BRCA TCGA-BH-A0W7 MAPKBP1 SNP Missense_Mutation 15 42104774 G A 45 78 BRCA TCGA-BH-A0W7 ACSBG1 SNP Silent 15 78475050 G A 48 55 BRCA TCGA-BH-A0W7 ADAMTSL3 SNP Missense_Mutation 15 84651757 C T 26 63 BRCA TCGA-BH-A0W7 PDXDC1 SNP Silent 16 15127253 G A 37 47 BRCA TCGA-BH-A0W7 GPR139 SNP Missense_Mutation 16 20043114 G C 45 63 BRCA TCGA-BH-A0W7 NSMCE1 SNP Silent 16 27238139 G A 35 54 BRCA TCGA-BH-A0W7 XPO6 SNP Silent 16 28109862 G C 33 57 BRCA TCGA-BH-A0W7 ZNF174 SNP Silent 16 3452196 C T 32 49 BRCA TCGA-BH-A0W7 CREBBP SNP Missense_Mutation 16 3778745 G C 45 50 BRCA TCGA-BH-A0W7 COG8 SNP Silent 16 69370510 G A 45 46 BRCA TCGA-BH-A0W7 HYDIN SNP Silent 16 70852401 G A 45 62 BRCA TCGA-BH-A0W7 MAP2K4 SNP Nonsense_Mutation 17 12032510 C T 29 98 BRCA TCGA-BH-A0W7 NLK SNP Silent 17 26495572 G A 45 67 BRCA TCGA-BH-A0W7 TEFM SNP Silent 17 29226322 G A 33 66 BRCA TCGA-BH-A0W7 OR1A2 SNP Missense_Mutation 17 3101617 G C 33 67 BRCA TCGA-BH-A0W7 KRTAP1-5 SNP Missense_Mutation 17 39183074 C T 17 37 BRCA TCGA-BH-A0W7 JUP SNP Silent 17 39919445 C G 29 68 BRCA TCGA-BH-A0W7 NBR1 SNP Missense_Mutation 17 41341611 G A 33 94 BRCA TCGA-BH-A0W7 HDAC5 SNP Missense_Mutation 17 42164964 C T 30 61 BRCA TCGA-BH-A0W7 HSF5 SNP Nonsense_Mutation 17 56540556 G A 45 79 BRCA TCGA-BH-A0W7 BCAS3 SNP Missense_Mutation 17 59118217 G A 33 97 BRCA TCGA-BH-A0W7 UBE2O SNP Silent 17 74392693 C T 29 54 BRCA TCGA-BH-A0W7 TMC6 SNP Silent 17 76116778 G A 37 56 BRCA TCGA-BH-A0W7 DNAH17 SNP Missense_Mutation 17 76455115 C T 32 85 BRCA TCGA-BH-A0W7 DNAH2 SNP Splice_Site 17 7671380 G T 44 75 BRCA TCGA-BH-A0W7 TCF4 SNP Missense_Mutation 18 52896088 C G 28 77 BRCA TCGA-BH-A0W7 PPP4R1 SNP Missense_Mutation 18 9588772 T C 51 53 BRCA TCGA-BH-A0W7 BEST2 SNP Missense_Mutation 19 12864087 G A 37 71 BRCA TCGA-BH-A0W7 CD97 SNP Missense_Mutation 19 14513553 C T 32 75 BRCA TCGA-BH-A0W7 OR7A17 SNP Missense_Mutation 19 14991294 G C 33 68 BRCA TCGA-BH-A0W7 ZNF570 SNP Missense_Mutation 19 37975503 G A 33 80 BRCA TCGA-BH-A0W7 PSG6 SNP Silent 19 43420539 G C 41 52 BRCA TCGA-BH-A0W7 LMTK3 SNP Silent 19 49001389 C G 29 54 BRCA TCGA-BH-A0W7 TFPT SNP Missense_Mutation 19 54610364 G C 33 57 BRCA TCGA-BH-A0W7 SHISA7 SNP Silent 19 55949000 C T 29 58 BRCA TCGA-BH-A0W7 PTBP1 SNP Missense_Mutation 19 810756 T G 52 78 BRCA TCGA-BH-A0W7 RFX8 SNP Splice_site 2 102083311 G C 45 57 BRCA TCGA-BH-A0W7 TTN SNP Silent 2 179569097 C G 29 58 BRCA TCGA-BH-A0W7 ITGAV SNP Missense_Mutation 2 187487072 G C 33 83 BRCA TCGA-BH-A0W7 ANKAR SNP Missense_Mutation 2 190611197 C G 29 75 BRCA TCGA-BH-A0W7 RFTN2 SNP Missense_Mutation 2 198495903 C G 29 82 BRCA TCGA-BH-A0W7 C2orf47 SNP Missense_Mutation 2 200824060 G C 33 97 BRCA TCGA-BH-A0W7 ZFP36L2 SNP Missense_Mutation 2 43452567 C G 31 82 BRCA TCGA-BH-A0W7 DYSF SNP Silent 2 71913616 C T 29 60 BRCA TCGA-BH-A0W7 LRRTM1 SNP Silent 2 80530006 C G 30 52 BRCA TCGA-BH-A0W7 PCSK2 SNP Missense_Mutation 20 17389950 C T 30 95 BRCA TCGA-BH-A0W7 RALGAPA2 SNP Missense_Mutation 20 20484088 C G 32 53 BRCA TCGA-BH-A0W7 NFS1 SNP Silent 20 34262522 G A 33 53 BRCA TCGA-BH-A0W7 DSN1 SNP Silent 20 35395197 G A 45 73 BRCA TCGA-BH-A0W7 TRIB3 SNP Missense_Mutation 20 368750 G C 33 55 BRCA TCGA-BH-A0W7 CSNK2A1 SNP Missense_Mutation 20 480564 C A 32 84 BRCA TCGA-BH-A0W7 SPO11 SNP Missense_Mutation 20 55909851 G A 37 99 BRCA TCGA-BH-A0W7 GRIK1 SNP Nonsense_Mutation 21 30909633 G C 45 83 BRCA TCGA-BH-A0W7 IL10RB SNP Missense_Mutation 21 34668591 G C 45 55 BRCA TCGA-BH-A0W7 SON SNP Missense_Mutation 21 34932323 C G 29 77 BRCA TCGA-BH-A0W7 PISD SNP Silent 22 32019790 C T 29 58 BRCA TCGA-BH-A0W7 GPRASP1 SNP Silent 23 101912816 C T 32 35 BRCA TCGA-BH-A0W7 NRK SNP Nonsense_Mutation 23 105156652 G T 45 67 BRCA TCGA-BH-A0W7 ATG4A SNP Missense_Mutation 23 107381127 C G 32 59 BRCA TCGA-BH-A0W7 TMEM27 SNP Missense_Mutation 23 15646168 C T 29 76 BRCA TCGA-BH-A0W7 PDHA1 SNP Missense_Mutation 23 19373844 G A 35 47 BRCA TCGA-BH-A0W7 UBA1 SNP Missense_Mutation 23 47058918 G A 37 81 BRCA TCGA-BH-A0W7 WAS SNP Missense_Mutation 23 48547760 G C 33 79 BRCA TCGA-BH-A0W7 CACNA1F SNP Missense_Mutation 23 49075818 C T 27 94 BRCA TCGA-BH-A0W7 SSX8 SNP Missense_Mutation 23 52657313 T C 51 39 BRCA TCGA-BH-A0W7 NHSL2 SNP Missense_Mutation 23 71360031 C T 26 76 BRCA TCGA-BH-A0W7 MORC1 SNP Missense_Mutation 3 108818304 C G 29 90 BRCA TCGA-BH-A0W7 C3orf52 SNP Missense_Mutation 3 111805372 G A 37 54 BRCA TCGA-BH-A0W7 SIDT1 SNP Silent 3 113325917 C T 32 79 BRCA TCGA-BH-A0W7 A4GNT SNP Silent 3 137843658 G A 45 64 BRCA TCGA-BH-A0W7 HPS3 SNP Missense_Mutation 3 148858903 C G 32 67 BRCA TCGA-BH-A0W7 MED12L SNP Missense_Mutation 3 151107914 C T 32 63 BRCA TCGA-BH-A0W7 PIK3CA SNP Missense_Mutation 3 178938934 G A 45 98 BRCA TCGA-BH-A0W7 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A0W7 USP13 SNP Splice_Site 3 179474867 G T 40 80 BRCA TCGA-BH-A0W7 TRANK1 SNP Missense_Mutation 3 36873648 G C 33 56 BRCA TCGA-BH-A0W7 LARS2 SNP Nonsense_Mutation 3 45561759 C T 29 79 BRCA TCGA-BH-A0W7 NBEAL2 SNP Missense_Mutation 3 47047285 C A 22 96 BRCA TCGA-BH-A0W7 RBM6 SNP Missense_Mutation 3 50091809 C G 32 54 BRCA TCGA-BH-A0W7 VPRBP SNP Nonsense_Mutation 3 51456160 G C 45 100 BRCA TCGA-BH-A0W7 DNAH1 SNP Silent 3 52400784 G A 45 60 BRCA TCGA-BH-A0W7 PDE12 SNP Silent 3 57543084 G A 47 63 BRCA TCGA-BH-A0W7 C3orf14 SNP Missense_Mutation 3 62307654 G A 45 53 BRCA TCGA-BH-A0W7 SETD5 SNP Missense_Mutation 3 9517426 C G 32 62 BRCA TCGA-BH-A0W7 FAM160A1 SNP Missense_Mutation 4 152583754 G A 45 59 BRCA TCGA-BH-A0W7 TLR2 SNP Silent 4 154626261 C T 29 44 BRCA TCGA-BH-A0W7 ADAM29 SNP Nonsense_Mutation 4 175898316 C G 29 50 BRCA TCGA-BH-A0W7 ATP10D SNP Missense_Mutation 4 47559850 G T 37 66 BRCA TCGA-BH-A0W7 DMXL1 SNP Missense_Mutation 5 118454657 G C 33 56 BRCA TCGA-BH-A0W7 MEGF10 SNP Silent 5 126755761 C T 29 71 BRCA TCGA-BH-A0W7 SLC27A6 SNP Silent 5 128326091 G A 33 50 BRCA TCGA-BH-A0W7 LOC100288105 DEL Frame_Shift_Del 5 140242452 C - 26 66 BRCA TCGA-BH-A0W7 PCDHA12 SNP Missense_Mutation 5 140256808 C T 31 66 BRCA TCGA-BH-A0W7 PCDHAC2 SNP Silent 5 140347416 C T 31 46 BRCA TCGA-BH-A0W7 PCDHGB2 SNP Nonsense_Mutation 5 140739809 C G 29 100 BRCA TCGA-BH-A0W7 NDST1 SNP Silent 5 149921221 G A 33 59 BRCA TCGA-BH-A0W7 CYFIP2 SNP Missense_Mutation 5 156746911 C T 19 59 BRCA TCGA-BH-A0W7 SH3PXD2B SNP Silent 5 171766111 G A 45 54 BRCA TCGA-BH-A0W7 TRIM41 SNP Missense_Mutation 5 180651352 A G 10 67 BRCA TCGA-BH-A0W7 GOLPH3 SNP Missense_Mutation 5 32126446 G C 33 56 BRCA TCGA-BH-A0W7 SLC30A5 SNP Missense_Mutation 5 68414426 C T 30 100 BRCA TCGA-BH-A0W7 XRCC4 SNP Missense_Mutation 5 82500653 G C 45 51 BRCA TCGA-BH-A0W7 QRSL1 SNP Missense_Mutation 6 107096913 G C 33 98 BRCA TCGA-BH-A0W7 ARHGAP18 SNP Silent 6 129939947 G A 37 29 BRCA TCGA-BH-A0W7 ARID1B SNP Missense_Mutation 6 157511206 G C 33 99 BRCA TCGA-BH-A0W7 TNFRSF21 SNP Silent 6 47254254 G A 44 70 BRCA TCGA-BH-A0W7 MUC17 SNP Missense_Mutation 7 100675920 C G 32 64 BRCA TCGA-BH-A0W7 TRPV6 SNP Missense_Mutation 7 142571218 C T 29 99 BRCA TCGA-BH-A0W7 PAXIP1 SNP Missense_Mutation 7 154754071 G A 47 95 BRCA TCGA-BH-A0W7 HECW1 SNP Missense_Mutation 7 43532742 G A 33 100 BRCA TCGA-BH-A0W7 FIGNL1 SNP Missense_Mutation 7 50513589 G T 33 87 BRCA TCGA-BH-A0W7 KRIT1 SNP Splice_site 7 91855841 C G 32 100 BRCA TCGA-BH-A0W7 COL1A2 SNP Missense_Mutation 7 94041910 C G 31 40 BRCA TCGA-BH-A0W7 TRRAP SNP Splice_site 7 98602971 G A 35 98 BRCA TCGA-BH-A0W7 PILRA SNP Silent 7 99987590 C G 29 50 BRCA TCGA-BH-A0W7 VPS13B SNP Silent 8 100732756 C T 32 62 BRCA TCGA-BH-A0W7 LONRF1 SNP Missense_Mutation 8 12586696 C T 29 97 BRCA TCGA-BH-A0W7 CHRNB3 SNP Missense_Mutation 8 42587035 C G 32 54 BRCA TCGA-BH-A0W7 RP1 SNP Missense_Mutation 8 55538461 G T 33 58 BRCA TCGA-BH-A0W7 ALG2 SNP Missense_Mutation 9 101980615 C A 29 64 BRCA TCGA-BH-A0W7 SVEP1 SNP Missense_Mutation 9 113141752 C G 31 100 BRCA TCGA-BH-A0W7 SVEP1 SNP Missense_Mutation 9 113169407 C G 29 75 BRCA TCGA-BH-A0W7 RC3H2 SNP Silent 9 125642124 C T 21 50 BRCA TCGA-BH-A0W7 PNPLA7 SNP Silent 9 140437118 C A 26 53 BRCA TCGA-BH-A0W7 RLN2 SNP Missense_Mutation 9 5300346 C T 29 52 BRCA TCGA-BH-A0W7 PCSK5 SNP Missense_Mutation 9 78638713 G C 33 72 BRCA TCGA-BH-A0W7 FAM75D1 SNP Missense_Mutation 9 84609355 C G 29 43 BRCA TCGA-BH-A0WA PRUNE DEL Splice_Site 1 151006280 A - 15 79 BRCA TCGA-BH-A0WA SYT11 SNP Missense_Mutation 1 155850298 T A 50 67 BRCA TCGA-BH-A0WA RCOR3 SNP Missense_Mutation 1 211486914 A T 7 70 BRCA TCGA-BH-A0WA USH2A SNP Missense_Mutation 1 215847863 A T 7 89 BRCA TCGA-BH-A0WA SZT2 DEL Frame_Shift_Del 1 43902942 GATCC - 45 58 BRCA TCGA-BH-A0WA FBXW4 DEL Frame_Shift_Del 10 103432723 CA - 21 69 BRCA TCGA-BH-A0WA ELOVL3 SNP Missense_Mutation 10 103988761 G C 42 98 BRCA TCGA-BH-A0WA WDR37 SNP Silent 10 1123883 C T 32 58 BRCA TCGA-BH-A0WA HSPA12A SNP Missense_Mutation 10 118439170 G A 46 99 BRCA TCGA-BH-A0WA NET1 SNP Missense_Mutation 10 5493833 C T 19 83 BRCA TCGA-BH-A0WA DDX50 SNP Missense_Mutation 10 70706250 C T 29 66 BRCA TCGA-BH-A0WA MMRN2 DEL In_Frame_Del 10 88702441 CTCCCGCGCCAGCCCGGC - 28 56 BRCA TCGA-BH-A0WA SAAL1 SNP Splice_Site 11 18124894 C T 32 81 BRCA TCGA-BH-A0WA TNNT3 SNP Splice_Site 11 1950349 G A 33 54 BRCA TCGA-BH-A0WA AMBRA1 SNP Missense_Mutation 11 46563919 T G 59 58 BRCA TCGA-BH-A0WA NDUFV1 SNP Missense_Mutation 11 67377047 G A 38 93 BRCA TCGA-BH-A0WA FAT3 SNP Missense_Mutation 11 92532859 C G 24 80 BRCA TCGA-BH-A0WA PWP1 SNP Silent 12 108086667 G A 45 50 BRCA TCGA-BH-A0WA MSI1 SNP Missense_Mutation 12 120791150 T G 55 74 BRCA TCGA-BH-A0WA ETNK1 SNP Missense_Mutation 12 22797179 A G 14 31 BRCA TCGA-BH-A0WA NAV3 SNP Missense_Mutation 12 78513062 T A 53 81 BRCA TCGA-BH-A0WA WDHD1 SNP Missense_Mutation 14 55408276 T G 61 69 BRCA TCGA-BH-A0WA GSTZ1 SNP Missense_Mutation 14 77793827 T A 56 75 BRCA TCGA-BH-A0WA UBR7 SNP Silent 14 93686633 T C 51 52 BRCA TCGA-BH-A0WA C15orf55 SNP Silent 15 34647278 G A 33 54 BRCA TCGA-BH-A0WA SPG11 SNP Missense_Mutation 15 44944117 G A 45 53 BRCA TCGA-BH-A0WA EDC3 SNP Missense_Mutation 15 74948230 T C 50 88 BRCA TCGA-BH-A0WA GSPT1 SNP Silent 16 12009404 C T 22 44 BRCA TCGA-BH-A0WA AXIN1 SNP Missense_Mutation 16 396580 A G 4 92 BRCA TCGA-BH-A0WA BRCA1 SNP Splice_Site 17 41223256 C T 32 74 BRCA TCGA-BH-A0WA ADAM11 SNP Missense_Mutation 17 42856604 G A 41 90 BRCA TCGA-BH-A0WA TP53 SNP Missense_Mutation 17 7577559 G C 41 58 BRCA TCGA-BH-A0WA ESCO1 SNP Missense_Mutation 18 19153877 T C 52 66 BRCA TCGA-BH-A0WA ASXL3 SNP Missense_Mutation 18 31319718 G T 33 66 BRCA TCGA-BH-A0WA EPG5 SNP Missense_Mutation 18 43534805 G A 33 58 BRCA TCGA-BH-A0WA ARHGEF1 SNP Missense_Mutation 19 42396123 G T 43 50 BRCA TCGA-BH-A0WA LYPD5 SNP Missense_Mutation 19 44303921 T G 51 48 BRCA TCGA-BH-A0WA TRPM4 SNP Silent 19 49692303 C A 21 55 BRCA TCGA-BH-A0WA GCC2 DEL Frame_Shift_Del 2 109098250 AATT - 5 68 BRCA TCGA-BH-A0WA PCDP1 SNP Silent 2 120362809 C G 32 48 BRCA TCGA-BH-A0WA LCT SNP Missense_Mutation 2 136558268 C A 26 100 BRCA TCGA-BH-A0WA ZNF804A SNP Silent 2 185803357 C T 25 66 BRCA TCGA-BH-A0WA CCDC150 SNP Splice_site 2 197565833 C G 28 45 BRCA TCGA-BH-A0WA ALPP SNP Missense_Mutation 2 233244985 G C 42 50 BRCA TCGA-BH-A0WA ALPPL2 SNP Missense_Mutation 2 233273066 G C 42 52 BRCA TCGA-BH-A0WA LGALSL SNP Silent 2 64683524 T A 56 50 BRCA TCGA-BH-A0WA WISP2 SNP Missense_Mutation 20 43348649 C T 19 64 BRCA TCGA-BH-A0WA NCOA3 SNP Missense_Mutation 20 46264187 C G 26 79 BRCA TCGA-BH-A0WA DIDO1 SNP Silent 20 61512736 T G 59 49 BRCA TCGA-BH-A0WA MX2 SNP Missense_Mutation 21 42749839 G A 39 93 BRCA TCGA-BH-A0WA TRPM2 SNP Missense_Mutation 21 45795833 G A 44 80 BRCA TCGA-BH-A0WA TCF20 SNP Missense_Mutation 22 42609210 G A 33 87 BRCA TCGA-BH-A0WA ARMCX5 SNP Missense_Mutation 23 101857506 C G 20 45 BRCA TCGA-BH-A0WA GPRASP1 SNP Missense_Mutation 23 101912281 G A 48 63 BRCA TCGA-BH-A0WA FAM122B SNP Missense_Mutation 23 133906273 A T 12 84 BRCA TCGA-BH-A0WA FHL1 SNP Splice_Site 23 135288565 G A 35 100 BRCA TCGA-BH-A0WA FMR1NB SNP Missense_Mutation 23 147088318 C T 29 51 BRCA TCGA-BH-A0WA MAGEA12 SNP Missense_Mutation 23 151900151 G T 35 48 BRCA TCGA-BH-A0WA CXorf59 SNP Missense_Mutation 23 36117974 A G 12 74 BRCA TCGA-BH-A0WA SLC9A7 SNP Missense_Mutation 23 46539151 G A 42 98 BRCA TCGA-BH-A0WA GPR156 SNP Missense_Mutation 3 119886036 C G 17 93 BRCA TCGA-BH-A0WA ALDH1L1 SNP Silent 3 125828902 G A 39 53 BRCA TCGA-BH-A0WA STAG1 SNP Silent 3 136096565 C T 29 54 BRCA TCGA-BH-A0WA LXN SNP Missense_Mutation 3 158387342 C T 25 84 BRCA TCGA-BH-A0WA ZNF619 SNP Nonsense_Mutation 3 40528623 G T 45 59 BRCA TCGA-BH-A0WA C3orf77 SNP Missense_Mutation 3 44285812 G A 43 59 BRCA TCGA-BH-A0WA LMOD3 SNP Silent 3 69167916 C G 21 56 BRCA TCGA-BH-A0WA CRELD1 SNP Missense_Mutation 3 9976594 A C 5 74 BRCA TCGA-BH-A0WA LPHN3 SNP Missense_Mutation 4 62778445 A T 1 67 BRCA TCGA-BH-A0WA TADA2B SNP Silent 4 7055893 C T 23 37 BRCA TCGA-BH-A0WA FAM71B SNP Missense_Mutation 5 156590215 T C 62 40 BRCA TCGA-BH-A0WA IL6ST SNP Missense_Mutation 5 55256367 G C 41 72 BRCA TCGA-BH-A0WA TAS2R1 SNP Missense_Mutation 5 9629727 T G 50 36 BRCA TCGA-BH-A0WA GCM2 SNP Missense_Mutation 6 10874470 G C 41 60 BRCA TCGA-BH-A0WA ZNF318 SNP Missense_Mutation 6 43316157 T A 56 57 BRCA TCGA-BH-A0WA CYP2W1 SNP Missense_Mutation 7 1024915 C G 32 68 BRCA TCGA-BH-A0WA ABCB5 SNP Missense_Mutation 7 20691242 C G 24 96 BRCA TCGA-BH-A0WA LIMK1 SNP Splice_site 7 73530288 G A 39 92 BRCA TCGA-BH-A0WA NXPH1 SNP Silent 7 8791150 C T 21 69 BRCA TCGA-BH-A0WA LYNX1 SNP Silent 8 143856611 G A 35 74 BRCA TCGA-BH-A0WA PXDNL SNP Missense_Mutation 8 52339306 A T 1 68 BRCA TCGA-BH-A0WA CHD7 SNP Silent 8 61765545 G C 46 68 BRCA TCGA-BH-A0WA RAD23B SNP Missense_Mutation 9 110086219 G A 33 98 BRCA TCGA-BH-A0WA KIAA2026 SNP Missense_Mutation 9 5920327 A T 4 89 BRCA TCGA-BH-A18F EXOSC10 SNP Silent 1 11147520 G A 44 71 BRCA TCGA-BH-A18F MTMR11 SNP Missense_Mutation 1 149901660 G C 33 75 BRCA TCGA-BH-A18F RORC SNP Missense_Mutation 1 151787136 C T 30 82 BRCA TCGA-BH-A18F PRRX1 SNP Missense_Mutation 1 170688909 G A 37 94 BRCA TCGA-BH-A18F ERO1LB SNP Missense_Mutation 1 236385305 T A 52 55 BRCA TCGA-BH-A18F OR2G3 SNP Missense_Mutation 1 247769804 C T 31 50 BRCA TCGA-BH-A18F ATPAF1 SNP Missense_Mutation 1 47130954 C T 29 81 BRCA TCGA-BH-A18F TCERG1L SNP Silent 10 133106511 C T 27 44 BRCA TCGA-BH-A18F PPP3CB SNP Missense_Mutation 10 75231327 C T 28 100 BRCA TCGA-BH-A18F ANXA11 SNP Missense_Mutation 10 81923292 G C 45 93 BRCA TCGA-BH-A18F LRIT2 SNP Silent 10 85984684 C A 21 63 BRCA TCGA-BH-A18F APOA1 SNP Silent 11 116706641 C T 32 58 BRCA TCGA-BH-A18F USP47 SNP Missense_Mutation 11 11977640 G A 40 83 BRCA TCGA-BH-A18F POLR2G SNP Silent 11 62533187 G A 33 65 BRCA TCGA-BH-A18F TSPAN11 SNP Missense_Mutation 12 31136068 G A 39 87 BRCA TCGA-BH-A18F COL2A1 SNP Missense_Mutation 12 48381467 C T 19 95 BRCA TCGA-BH-A18F KRT72 SNP Missense_Mutation 12 52981502 C T 19 77 BRCA TCGA-BH-A18F KIF5A SNP Missense_Mutation 12 57944160 G A 35 72 BRCA TCGA-BH-A18F GDF3 SNP Silent 12 7843251 C T 32 50 BRCA TCGA-BH-A18F GPR97 SNP Silent 16 57713121 C T 27 34 BRCA TCGA-BH-A18F CES3 SNP Silent 16 67006796 C T 29 50 BRCA TCGA-BH-A18F CDH1 INS Frame_Shift_Ins 16 68855935 - CTGC 62 49 BRCA TCGA-BH-A18F NF1 DEL Frame_Shift_Del 17 29562657 TGTT - 55 89 BRCA TCGA-BH-A18F SOCS6 SNP Missense_Mutation 18 67992128 G T 44 100 BRCA TCGA-BH-A18F ZNF257 SNP Missense_Mutation 19 22271888 C A 24 56 BRCA TCGA-BH-A18F CEACAM3 SNP Missense_Mutation 19 42301853 G A 33 25 BRCA TCGA-BH-A18F POLR1B SNP Missense_Mutation 2 113308539 G A 37 63 BRCA TCGA-BH-A18F CNTNAP5 SNP Missense_Mutation 2 125281897 G A 47 95 BRCA TCGA-BH-A18F NEB SNP Missense_Mutation 2 152384078 C T 31 86 BRCA TCGA-BH-A18F INPP5D SNP Missense_Mutation 2 234094557 G A 45 81 BRCA TCGA-BH-A18F NLRC4 SNP Missense_Mutation 2 32476071 G A 40 49 BRCA TCGA-BH-A18F XPO1 SNP Missense_Mutation 2 61719472 C T 31 100 BRCA TCGA-BH-A18F ZFP64 SNP Silent 20 50701381 C T 32 50 BRCA TCGA-BH-A18F TRPM2 SNP Missense_Mutation 21 45826592 G C 43 95 BRCA TCGA-BH-A18F H2BFM SNP Missense_Mutation 23 103268309 C T 27 45 BRCA TCGA-BH-A18F ZCCHC16 SNP Silent 23 111698859 G A 39 52 BRCA TCGA-BH-A18F CUL4B SNP Missense_Mutation 23 119691821 C A 32 69 BRCA TCGA-BH-A18F BEND2 SNP Silent 23 18195777 G A 33 61 BRCA TCGA-BH-A18F ARSE SNP Silent 23 2856150 C T 24 46 BRCA TCGA-BH-A18F PAGE1 SNP Missense_Mutation 23 49459371 C G 21 48 BRCA TCGA-BH-A18F P2RY10 SNP Missense_Mutation 23 78216027 C T 24 56 BRCA TCGA-BH-A18F PIK3CA SNP Missense_Mutation 3 178936094 C A 25 98 BRCA TCGA-BH-A18F PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A18F SCN5A SNP Silent 3 38593036 C T 23 32 BRCA TCGA-BH-A18F GRK4 SNP Silent 4 3040213 C T 28 62 BRCA TCGA-BH-A18F SEC31A INS Frame_Shift_Ins 4 83763540 - T 44 74 BRCA TCGA-BH-A18F C4A SNP Missense_Mutation 6 31962113 G C 34 57 BRCA TCGA-BH-A18F KIFC1 SNP Missense_Mutation 6 33371820 G C 41 61 BRCA TCGA-BH-A18F HMGCLL1 SNP Silent 6 55360322 T C 64 42 BRCA TCGA-BH-A18F FLNC SNP Missense_Mutation 7 128490064 C A 32 59 BRCA TCGA-BH-A18F FAM131B SNP Missense_Mutation 7 143057212 C T 26 79 BRCA TCGA-BH-A18F CLIP2 SNP Missense_Mutation 7 73790952 G C 41 96 BRCA TCGA-BH-A18F GTF2IRD2 SNP Nonsense_Mutation 7 74212296 G A 47 49 BRCA TCGA-BH-A18F AP4M1 DEL Frame_Shift_Del 7 99702544 CTTC - 28 53 BRCA TCGA-BH-A18F VPS13B SNP Silent 8 100479736 T C 60 55 BRCA TCGA-BH-A18F C8orf73 SNP Missense_Mutation 8 144652216 C T 31 79 BRCA TCGA-BH-A18F CNTLN SNP Missense_Mutation 9 17466866 G C 33 73 BRCA TCGA-BH-A18H FCRL3 SNP Silent 1 157650538 C T 31 49 BRCA TCGA-BH-A18H SPEN SNP Nonsense_Mutation 1 16262615 C T 25 81 BRCA TCGA-BH-A18H EMC1 SNP Missense_Mutation 1 19559537 C T 25 94 BRCA TCGA-BH-A18H SLC26A9 SNP Missense_Mutation 1 205899028 T C 51 60 BRCA TCGA-BH-A18H PRMT3 SNP Missense_Mutation 11 20486016 G A 46 93 BRCA TCGA-BH-A18H C11orf40 SNP Missense_Mutation 11 4593466 G C 33 55 BRCA TCGA-BH-A18H CCDC88B SNP Missense_Mutation 11 64111763 G A 41 69 BRCA TCGA-BH-A18H RCE1 SNP Silent 11 66613002 T G 59 51 BRCA TCGA-BH-A18H KLHL35 SNP Missense_Mutation 11 75133746 C T 32 97 BRCA TCGA-BH-A18H PRCP SNP Missense_Mutation 11 82536048 G A 42 64 BRCA TCGA-BH-A18H OR6C65 SNP Silent 12 55794894 G A 34 49 BRCA TCGA-BH-A18H A2M SNP Missense_Mutation 12 9230409 T C 57 53 BRCA TCGA-BH-A18H SPRED1 SNP Missense_Mutation 15 38614571 G A 45 100 BRCA TCGA-BH-A18H NDUFAF1 DEL Frame_Shift_Del 15 41687218 AA - 13 71 BRCA TCGA-BH-A18H SECISBP2L SNP Silent 15 49309150 G A 35 48 BRCA TCGA-BH-A18H ITGAX SNP Missense_Mutation 16 31393187 G A 33 54 BRCA TCGA-BH-A18H TP53 SNP Nonsense_Mutation 17 7576855 G A 45 57 BRCA TCGA-BH-A18H LOC441806 SNP Nonsense_Mutation 18 856809 G T 45 74 BRCA TCGA-BH-A18H BIRC8 SNP Missense_Mutation 19 53793366 C G 29 55 BRCA TCGA-BH-A18H COL6A3 SNP Silent 2 238303252 C T 23 53 BRCA TCGA-BH-A18H LOC728470 SNP Missense_Mutation 23 134326855 T A 52 13 BRCA TCGA-BH-A18H SLC9A6 SNP Silent 23 135126700 T A 55 31 BRCA TCGA-BH-A18H DMD SNP Missense_Mutation 23 32717338 T C 63 86 BRCA TCGA-BH-A18H PIK3CA SNP Missense_Mutation 3 178952054 G A 41 100 BRCA TCGA-BH-A18H MAPKAPK3 SNP Missense_Mutation 3 50679183 C A 18 66 BRCA TCGA-BH-A18H CAMK1 SNP Missense_Mutation 3 9803438 C T 32 98 BRCA TCGA-BH-A18H FRAS1 SNP Missense_Mutation 4 79396611 G A 42 99 BRCA TCGA-BH-A18H ENOPH1 SNP Missense_Mutation 4 83375938 C G 32 57 BRCA TCGA-BH-A18H SHPRH SNP Missense_Mutation 6 146276233 C G 20 41 BRCA TCGA-BH-A18H C9orf114 SNP Missense_Mutation 9 131587316 C T 29 94 BRCA TCGA-BH-A18H WNK2 SNP Missense_Mutation 9 96051418 A C 11 60 BRCA TCGA-BH-A18I IQGAP3 SNP Silent 1 156499903 C T 21 70 BRCA TCGA-BH-A18I GPN2 SNP Missense_Mutation 1 27210723 A T 9 91 BRCA TCGA-BH-A18I MRPL23 SNP Missense_Mutation 11 1977619 G A 39 69 BRCA TCGA-BH-A18I CAMKK2 SNP Missense_Mutation 12 121712041 G A 37 65 BRCA TCGA-BH-A18I UGGT2 SNP Missense_Mutation 13 96529583 C G 30 95 BRCA TCGA-BH-A18I ATP10A SNP Missense_Mutation 15 25947227 G A 39 85 BRCA TCGA-BH-A18I MAP1A SNP Missense_Mutation 15 43814174 G A 38 72 BRCA TCGA-BH-A18I MYO9A SNP Missense_Mutation 15 72192139 A G 4 53 BRCA TCGA-BH-A18I NLRC3 SNP Silent 16 3611738 C T 25 53 BRCA TCGA-BH-A18I CEP192 SNP Missense_Mutation 18 13059100 G A 40 64 BRCA TCGA-BH-A18I POU2F2 SNP Silent 19 42599576 G A 39 35 BRCA TCGA-BH-A18I CNTNAP5 SNP Missense_Mutation 2 125547610 A T 7 63 BRCA TCGA-BH-A18I ARHGEF4 SNP Missense_Mutation 2 131796570 G A 37 89 BRCA TCGA-BH-A18I LCT DEL Frame_Shift_Del 2 136570313 A - 15 92 BRCA TCGA-BH-A18I BCHE SNP Nonsense_Mutation 3 165504044 C A 29 73 BRCA TCGA-BH-A18I PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-BH-A18I GAB1 SNP Missense_Mutation 4 144360988 G A 37 95 BRCA TCGA-BH-A18I PCDHGA1 SNP Missense_Mutation 5 140710391 A G 2 69 BRCA TCGA-BH-A18I PCDHGB6 SNP Missense_Mutation 5 140788500 G A 33 78 BRCA TCGA-BH-A18I GRK6 SNP Missense_Mutation 5 176860631 C T 27 100 BRCA TCGA-BH-A18I HACE1 SNP Silent 6 105198288 G A 45 58 BRCA TCGA-BH-A18I GLCCI1 SNP Missense_Mutation 7 8099816 A G 4 73 BRCA TCGA-BH-A18I HMBOX1 DEL Frame_Shift_Del 8 28827654 A - 13 76 BRCA TCGA-BH-A18I UBAP1 SNP Silent 9 34241932 G A 34 65 BRCA TCGA-BH-A18J C1orf31 SNP Missense_Mutation 1 234519488 G A 33 86 BRCA TCGA-BH-A18J RLF SNP Missense_Mutation 1 40703390 G A 45 63 BRCA TCGA-BH-A18J NEXN SNP Missense_Mutation 1 78381798 G A 45 82 BRCA TCGA-BH-A18J ATRNL1 SNP Missense_Mutation 10 117075136 C T 32 100 BRCA TCGA-BH-A18J SLC37A2 SNP Missense_Mutation 11 124954753 G C 41 54 BRCA TCGA-BH-A18J ANO5 SNP Missense_Mutation 11 22271833 A T 14 88 BRCA TCGA-BH-A18J NUP98 SNP Silent 11 3707308 G A 45 67 BRCA TCGA-BH-A18J DTX4 SNP Silent 11 58949648 G A 45 21 BRCA TCGA-BH-A18J SSH3 SNP Missense_Mutation 11 67077640 G C 45 61 BRCA TCGA-BH-A18J TRIM53 SNP Missense_Mutation 11 89726904 G A 37 48 BRCA TCGA-BH-A18J ABCD2 SNP Nonsense_Mutation 12 39947821 G A 45 100 BRCA TCGA-BH-A18J NELL2 SNP Missense_Mutation 12 44914000 C G 29 99 BRCA TCGA-BH-A18J MLL2 SNP Missense_Mutation 12 49431434 C G 32 56 BRCA TCGA-BH-A18J PAN2 SNP Nonsense_Mutation 12 56718085 C A 21 80 BRCA TCGA-BH-A18J COG3 SNP Missense_Mutation 13 46050340 C T 21 96 BRCA TCGA-BH-A18J MIA2 SNP Missense_Mutation 14 39717240 C G 29 46 BRCA TCGA-BH-A18J AGBL1 SNP Silent 15 87531306 C T 32 44 BRCA TCGA-BH-A18J NOXO1 SNP Silent 16 2029831 C T 23 37 BRCA TCGA-BH-A18J TBC1D24 SNP Nonsense_Mutation 16 2548280 C A 31 99 BRCA TCGA-BH-A18J RBFOX1 SNP Missense_Mutation 16 7568188 C A 29 94 BRCA TCGA-BH-A18J LOC645139 SNP Missense_Mutation 17 18554458 G T 33 76 BRCA TCGA-BH-A18J HLF SNP Silent 17 53342935 G A 45 67 BRCA TCGA-BH-A18J BPTF SNP Silent 17 65909295 C A 29 79 BRCA TCGA-BH-A18J ZNF750 SNP Silent 17 80788525 C T 29 73 BRCA TCGA-BH-A18J ASXL3 SNP Missense_Mutation 18 31320321 G A 45 81 BRCA TCGA-BH-A18J POLI SNP Missense_Mutation 18 51795967 C G 19 51 BRCA TCGA-BH-A18J TCF4 SNP Silent 18 52899811 C T 31 46 BRCA TCGA-BH-A18J NPHS1 SNP Missense_Mutation 19 36322218 G A 38 53 BRCA TCGA-BH-A18J LIMS2 SNP Missense_Mutation 2 128399741 C A 24 60 BRCA TCGA-BH-A18J SCN1A SNP Missense_Mutation 2 166859083 C T 29 69 BRCA TCGA-BH-A18J KBTBD10 SNP Missense_Mutation 2 170366577 G C 45 96 BRCA TCGA-BH-A18J MARS2 SNP Silent 2 198570604 C T 32 75 BRCA TCGA-BH-A18J EEF1B2 SNP Missense_Mutation 2 207027604 C G 32 65 BRCA TCGA-BH-A18J DNMT3A SNP Missense_Mutation 2 25471111 T G 64 73 BRCA TCGA-BH-A18J PPP1R21 SNP Nonsense_Mutation 2 48668100 C A 31 75 BRCA TCGA-BH-A18J PLEK SNP Silent 2 68607462 G C 41 44 BRCA TCGA-BH-A18J APLF SNP Missense_Mutation 2 68804999 G A 45 83 BRCA TCGA-BH-A18J ODZ1 SNP Missense_Mutation 23 123539084 C G 32 96 BRCA TCGA-BH-A18J EIF1AX SNP Nonsense_Mutation 23 20148714 C A 29 79 BRCA TCGA-BH-A18J C3orf30 SNP Silent 3 118865111 C T 26 43 BRCA TCGA-BH-A18J LRRIQ4 SNP Missense_Mutation 3 169539890 G A 45 69 BRCA TCGA-BH-A18J PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-BH-A18J IL17RC SNP Missense_Mutation 3 9959575 G A 34 51 BRCA TCGA-BH-A18J ELMOD2 SNP Missense_Mutation 4 141446688 G A 45 71 BRCA TCGA-BH-A18J SLIT2 SNP Silent 4 20541118 C T 29 49 BRCA TCGA-BH-A18J BEND4 SNP Missense_Mutation 4 42145827 C G 32 64 BRCA TCGA-BH-A18J TSSK1B SNP Silent 5 112770420 C T 31 41 BRCA TCGA-BH-A18J KCNN2 SNP Missense_Mutation 5 113831863 C T 29 96 BRCA TCGA-BH-A18J CDC25C SNP Silent 5 137621494 G T 45 74 BRCA TCGA-BH-A18J MYO10 DEL Frame_Shift_Del 5 16673826 TGCAGGAGCCGCCGCCA - 63 77 BRCA TCGA-BH-A18J MAPK9 SNP Silent 5 179676088 G A 41 87 BRCA TCGA-BH-A18J NNT SNP Missense_Mutation 5 43644857 G C 45 98 BRCA TCGA-BH-A18J RNF180 SNP Missense_Mutation 5 63621163 C A 32 72 BRCA TCGA-BH-A18J SEMA5A SNP Nonsense_Mutation 5 9154769 G A 45 80 BRCA TCGA-BH-A18J RIOK2 SNP Missense_Mutation 5 96503693 C T 32 69 BRCA TCGA-BH-A18J BEND3 SNP Missense_Mutation 6 107391941 C A 19 46 BRCA TCGA-BH-A18J ROS1 SNP Missense_Mutation 6 117622168 G T 48 47 BRCA TCGA-BH-A18J NHLRC1 SNP Missense_Mutation 6 18121699 A G 7 88 BRCA TCGA-BH-A18J ZNF192 SNP Missense_Mutation 6 28120897 A T 7 69 BRCA TCGA-BH-A18J C6orf132 SNP Missense_Mutation 6 42096493 G A 37 68 BRCA TCGA-BH-A18J USP45 SNP Missense_Mutation 6 99936655 C T 29 80 BRCA TCGA-BH-A18J TNRC18 SNP Missense_Mutation 7 5410036 C G 30 93 BRCA TCGA-BH-A18J ZNF394 SNP Missense_Mutation 7 99091324 C T 27 53 BRCA TCGA-BH-A18J ENPP2 SNP Missense_Mutation 8 120608116 G A 45 84 BRCA TCGA-BH-A18J C9orf91 SNP Missense_Mutation 9 117396146 G C 33 66 BRCA TCGA-BH-A18J RANBP6 SNP Missense_Mutation 9 6015273 C G 28 75 BRCA TCGA-BH-A18K ITGA10 SNP Silent 1 145539030 C T 30 61 BRCA TCGA-BH-A18K SLC27A3 SNP Silent 1 153747796 T C 54 55 BRCA TCGA-BH-A18K SPTA1 SNP Silent 1 158644209 G A 36 53 BRCA TCGA-BH-A18K TIMM17A SNP Missense_Mutation 1 201924671 G C 37 92 BRCA TCGA-BH-A18K HP1BP3 SNP Splice_site 1 21097424 T A 55 82 BRCA TCGA-BH-A18K RAP1GAP SNP Silent 1 21928254 G A 38 51 BRCA TCGA-BH-A18K TTLL7 SNP Missense_Mutation 1 84408343 C T 21 80 BRCA TCGA-BH-A18K VPS26B SNP Silent 11 134114938 G C 45 60 BRCA TCGA-BH-A18K LRP4 SNP Missense_Mutation 11 46896381 T C 49 93 BRCA TCGA-BH-A18K SLC22A25 SNP Silent 11 62996780 G A 35 56 BRCA TCGA-BH-A18K TYR SNP Missense_Mutation 11 88911241 C G 27 8 BRCA TCGA-BH-A18K CPNE8 SNP Missense_Mutation 12 39087515 G C 33 64 BRCA TCGA-BH-A18K AKAP6 SNP Missense_Mutation 14 33290671 G C 41 97 BRCA TCGA-BH-A18K SETD1A SNP Silent 16 30977152 T A 54 59 BRCA TCGA-BH-A18K MYO15A SNP Missense_Mutation 17 18065989 T C 51 90 BRCA TCGA-BH-A18K GGNBP2 SNP Silent 17 34937779 C T 23 54 BRCA TCGA-BH-A18K ASB16 SNP Silent 17 42255078 A T 7 37 BRCA TCGA-BH-A18K SOX9 SNP Nonsense_Mutation 17 70117908 C T 21 81 BRCA TCGA-BH-A18K CYTH1 DEL In_Frame_Del 17 76676295 CTT - 24 72 BRCA TCGA-BH-A18K ZNF90 SNP Missense_Mutation 19 20229605 A G 14 25 BRCA TCGA-BH-A18K ZNF569 SNP Missense_Mutation 19 37904255 C G 32 55 BRCA TCGA-BH-A18K ZNF415 SNP Silent 19 53611669 T C 64 49 BRCA TCGA-BH-A18K NLRP2 SNP Silent 19 55494011 C T 23 36 BRCA TCGA-BH-A18K LOC646698 SNP Missense_Mutation 19 56755692 T A 50 52 BRCA TCGA-BH-A18K PLCD4 SNP Silent 2 219492900 C T 24 50 BRCA TCGA-BH-A18K LRRTM1 SNP Silent 2 80530819 C A 17 56 BRCA TCGA-BH-A18K PROM2 SNP Silent 2 95944749 G A 47 58 BRCA TCGA-BH-A18K SYS1 SNP Missense_Mutation 20 43992225 G T 33 93 BRCA TCGA-BH-A18K USP27X SNP Silent 23 49645295 C T 28 84 BRCA TCGA-BH-A18K ATRX SNP Missense_Mutation 23 76940008 T C 60 87 BRCA TCGA-BH-A18K CEP97 SNP Missense_Mutation 3 101477254 G A 45 94 BRCA TCGA-BH-A18K TOPBP1 SNP Missense_Mutation 3 133337228 C G 29 100 BRCA TCGA-BH-A18K CHRD SNP Missense_Mutation 3 184104637 G A 37 85 BRCA TCGA-BH-A18K GOLGA4 SNP Missense_Mutation 3 37356982 G A 33 81 BRCA TCGA-BH-A18K FAM208A SNP Silent 3 56716828 G A 45 67 BRCA TCGA-BH-A18K FLNB SNP Missense_Mutation 3 58134535 G A 39 71 BRCA TCGA-BH-A18K CADPS SNP Missense_Mutation 3 62535703 A C 7 90 BRCA TCGA-BH-A18K PPP4R2 SNP Missense_Mutation 3 73096423 G C 33 100 BRCA TCGA-BH-A18K LOC643446 SNP Missense_Mutation 4 11374478 C T 23 52 BRCA TCGA-BH-A18K ERVMER34-1 SNP Missense_Mutation 4 53610409 C G 30 50 BRCA TCGA-BH-A18K EPB41L4A DEL Frame_Shift_Del 5 111595650 T - 53 50 BRCA TCGA-BH-A18K SEMA6A DEL In_Frame_Del 5 115823840 GAA - 45 56 BRCA TCGA-BH-A18K PCDHA2 SNP Missense_Mutation 5 140176351 C T 29 66 BRCA TCGA-BH-A18K PIK3R1 INS In_Frame_Ins 5 67591111 - GAC 7 37 BRCA TCGA-BH-A18K ROS1 SNP Missense_Mutation 6 117710620 G A 41 58 BRCA TCGA-BH-A18K HFE SNP Missense_Mutation 6 26092916 C T 24 55 BRCA TCGA-BH-A18K VWDE SNP Missense_Mutation 7 12401033 C A 30 54 BRCA TCGA-BH-A18K FGFR1 SNP Silent 8 38271457 G A 37 33 BRCA TCGA-BH-A18K CPNE3 SNP Missense_Mutation 8 87568396 A G 16 80 BRCA TCGA-BH-A18L LOC100132108 SNP Missense_Mutation 1 155815532 G A 45 73 BRCA TCGA-BH-A18L CCDC19 SNP Missense_Mutation 1 159846491 G A 38 72 BRCA TCGA-BH-A18L C1orf222 SNP Missense_Mutation 1 1902246 G A 38 58 BRCA TCGA-BH-A18L AIDA SNP Nonsense_Mutation 1 222876531 G A 47 86 BRCA TCGA-BH-A18L EIF3A SNP Missense_Mutation 10 120795555 C T 19 100 BRCA TCGA-BH-A18L PLXDC2 SNP Silent 10 20357104 G T 45 58 BRCA TCGA-BH-A18L JMJD1C SNP Nonsense_Mutation 10 64974081 G A 38 92 BRCA TCGA-BH-A18L RCOR2 SNP Missense_Mutation 11 63683048 C A 19 63 BRCA TCGA-BH-A18L MAML2 SNP Missense_Mutation 11 96074719 G A 38 52 BRCA TCGA-BH-A18L TMEM132D SNP Missense_Mutation 12 129559467 G T 45 57 BRCA TCGA-BH-A18L OXGR1 SNP Silent 13 97639726 G A 38 30 BRCA TCGA-BH-A18L C14orf80 SNP Missense_Mutation 14 105958575 C G 23 50 BRCA TCGA-BH-A18L ACYP1 SNP Missense_Mutation 14 75520314 G A 39 59 BRCA TCGA-BH-A18L NEK9 SNP Missense_Mutation 14 75551376 G A 41 84 BRCA TCGA-BH-A18L ATG2B SNP Missense_Mutation 14 96792113 C G 18 100 BRCA TCGA-BH-A18L PLIN1 SNP Missense_Mutation 15 90212738 A T 6 64 BRCA TCGA-BH-A18L FANCA DEL In_Frame_Del 16 89805935 GGA - 39 51 BRCA TCGA-BH-A18L MYBBP1A SNP Missense_Mutation 17 4442756 C T 20 51 BRCA TCGA-BH-A18L ALPK2 SNP Silent 18 56203789 G A 40 39 BRCA TCGA-BH-A18L CNOT3 SNP Missense_Mutation 19 54647208 G A 33 95 BRCA TCGA-BH-A18L MUC16 SNP Silent 19 9062672 G T 35 51 BRCA TCGA-BH-A18L FAM98A SNP Missense_Mutation 2 33809886 T G 49 77 BRCA TCGA-BH-A18L ENSG00000181250 SNP Silent 2 33952282 G A 40 61 BRCA TCGA-BH-A18L CDH26 SNP Missense_Mutation 20 58563973 G C 33 35 BRCA TCGA-BH-A18L GRIK1 SNP Missense_Mutation 21 30934056 C T 27 99 BRCA TCGA-BH-A18L APOBEC3G SNP Missense_Mutation 22 39475005 G A 40 47 BRCA TCGA-BH-A18L COL4A6 SNP Silent 23 107412837 G A 39 35 BRCA TCGA-BH-A18L ARHGAP36 SNP Silent 23 130218365 A G 4 37 BRCA TCGA-BH-A18L FAM127B SNP Silent 23 134185956 G A 40 53 BRCA TCGA-BH-A18L KLHL4 SNP Splice_Site 23 86872933 A G 15 85 BRCA TCGA-BH-A18L MYRIP SNP Missense_Mutation 3 40192554 A T 4 67 BRCA TCGA-BH-A18L DEFB131 SNP Silent 4 9452156 T C 51 58 BRCA TCGA-BH-A18L FER SNP Silent 5 108290582 T C 64 54 BRCA TCGA-BH-A18L TRPC7 SNP Silent 5 135587470 G A 37 51 BRCA TCGA-BH-A18L ANKH SNP Missense_Mutation 5 14758638 G A 40 99 BRCA TCGA-BH-A18L FAM169A SNP Nonsense_Mutation 5 74078857 C A 32 70 BRCA TCGA-BH-A18L ZNF391 SNP Missense_Mutation 6 27368399 C G 22 48 BRCA TCGA-BH-A18L AKR1B1 SNP Missense_Mutation 7 134135680 A T 8 53 BRCA TCGA-BH-A18L MEOX2 SNP Missense_Mutation 7 15652133 C T 30 97 BRCA TCGA-BH-A18L PIWIL2 SNP Missense_Mutation 8 22136963 G A 48 52 BRCA TCGA-BH-A18L NEK6 SNP Missense_Mutation 9 127089686 G A 38 100 BRCA TCGA-BH-A18L ROR2 SNP Missense_Mutation 9 94487328 C T 23 64 BRCA TCGA-BH-A18M PGBD5 SNP Silent 1 230492718 G A 40 43 BRCA TCGA-BH-A18M KIF26B SNP Missense_Mutation 1 245849622 G A 40 49 BRCA TCGA-BH-A18M ITGA8 SNP Missense_Mutation 10 15634272 C T 19 57 BRCA TCGA-BH-A18M GATA3 SNP Missense_Mutation 10 8100382 A T 3 70 BRCA TCGA-BH-A18M VWF SNP Splice_site 12 6091157 G A 42 63 BRCA TCGA-BH-A18M SRGAP1 SNP Missense_Mutation 12 64472859 G A 33 85 BRCA TCGA-BH-A18M ENOX1 SNP Missense_Mutation 13 43930084 T C 62 89 BRCA TCGA-BH-A18M CEP152 SNP Missense_Mutation 15 49060439 A C 8 49 BRCA TCGA-BH-A18M LIG3 SNP Missense_Mutation 17 33316500 C G 32 69 BRCA TCGA-BH-A18M GLI2 SNP Missense_Mutation 2 121747788 C T 23 52 BRCA TCGA-BH-A18M SF3B1 SNP Missense_Mutation 2 198266834 T C 62 93 BRCA TCGA-BH-A18M CDH4 SNP Silent 20 60498706 C T 23 24 BRCA TCGA-BH-A18M TCEAL3 DEL In_Frame_Del 23 102864406 GAT - 33 69 BRCA TCGA-BH-A18M FAM123B SNP Missense_Mutation 23 63411027 G C 45 64 BRCA TCGA-BH-A18M FBLN2 SNP Missense_Mutation 3 13671349 C T 23 99 BRCA TCGA-BH-A18M PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A18M CDCP1 DEL Frame_Shift_Del 3 45127233 CT - 20 58 BRCA TCGA-BH-A18M CDCP1 DEL Frame_Shift_Del 3 45127239 GACTCAGG - 33 86 BRCA TCGA-BH-A18M SLMAP SNP Silent 3 57843504 G A 38 33 BRCA TCGA-BH-A18M ADH7 SNP Missense_Mutation 4 100340221 G A 41 61 BRCA TCGA-BH-A18M RAPGEF6 SNP Missense_Mutation 5 130970657 C T 31 75 BRCA TCGA-BH-A18M MAP3K1 SNP Nonsense_Mutation 5 56178571 G T 41 92 BRCA TCGA-BH-A18M MUC3A SNP Silent 7 100551180 C T 23 52 BRCA TCGA-BH-A18M UNC5D SNP Missense_Mutation 8 35579891 C A 29 73 BRCA TCGA-BH-A18M ST18 SNP Silent 8 53050007 C T 29 50 BRCA TCGA-BH-A18N PTCHD2 SNP Missense_Mutation 1 11589972 G A 40 48 BRCA TCGA-BH-A18N SLAMF7 SNP Missense_Mutation 1 160720169 T C 57 47 BRCA TCGA-BH-A18N C1orf86 SNP Missense_Mutation 1 2125495 A G 6 38 BRCA TCGA-BH-A18N PANK4 SNP Missense_Mutation 1 2452259 T C 55 66 BRCA TCGA-BH-A18N CUL5 SNP Silent 11 107925435 A G 8 53 BRCA TCGA-BH-A18N NAV2 SNP Missense_Mutation 11 19955784 A G 2 43 BRCA TCGA-BH-A18N CPT1A SNP Splice_site 11 68579905 G A 38 61 BRCA TCGA-BH-A18N CLIP1 SNP Missense_Mutation 12 122825568 A G 8 80 BRCA TCGA-BH-A18N TESPA1 SNP Missense_Mutation 12 55357565 G A 38 80 BRCA TCGA-BH-A18N IFNG SNP Silent 12 68552013 A G 16 50 BRCA TCGA-BH-A18N CLYBL SNP Missense_Mutation 13 100518497 C G 25 96 BRCA TCGA-BH-A18N ZIC5 SNP Silent 13 100617886 C T 27 33 BRCA TCGA-BH-A18N MDGA2 SNP Missense_Mutation 14 47389322 G T 41 78 BRCA TCGA-BH-A18N CCP110 SNP Missense_Mutation 16 19554266 C A 31 86 BRCA TCGA-BH-A18N CDH8 SNP Missense_Mutation 16 61689592 C G 30 66 BRCA TCGA-BH-A18N PRKAR1A SNP Silent 17 66511561 C T 23 54 BRCA TCGA-BH-A18N CD68 SNP Missense_Mutation 17 7484092 C G 21 49 BRCA TCGA-BH-A18N DCC SNP Silent 18 50432563 C A 23 72 BRCA TCGA-BH-A18N ATP4A SNP Missense_Mutation 19 36051382 C T 18 92 BRCA TCGA-BH-A18N SLC9A4 DEL Frame_Shift_Del 2 103141501 T - 49 54 BRCA TCGA-BH-A18N NT5C1B-RDH14 SNP Missense_Mutation 2 18767558 A T 12 58 BRCA TCGA-BH-A18N HECW2 SNP Missense_Mutation 2 197171902 C T 25 56 BRCA TCGA-BH-A18N ABCA12 SNP Silent 2 215843723 G A 39 34 BRCA TCGA-BH-A18N ZNF341 SNP Missense_Mutation 20 32345105 C T 19 54 BRCA TCGA-BH-A18N TMCO6 SNP Missense_Mutation 5 140024286 T G 60 55 BRCA TCGA-BH-A18N PCDHA1 SNP Missense_Mutation 5 140167950 C T 27 56 BRCA TCGA-BH-A18N PCDHGB6 SNP Nonsense_Mutation 5 140789281 C G 19 47 BRCA TCGA-BH-A18N MAP3K1 INS Frame_Shift_Ins 5 56177058 - GTCA 63 51 BRCA TCGA-BH-A18N MAP3K1 SNP Nonsense_Mutation 5 56177978 C G 29 86 BRCA TCGA-BH-A18N SYNE1 SNP Missense_Mutation 6 152804248 G A 40 60 BRCA TCGA-BH-A18N TULP4 SNP Missense_Mutation 6 158922767 T C 52 93 BRCA TCGA-BH-A18N GNMT SNP Silent 6 42931381 T C 56 43 BRCA TCGA-BH-A18N MGAM SNP Missense_Mutation 7 141721528 A G 4 52 BRCA TCGA-BH-A18N MLL3 DEL Frame_Shift_Del 7 151845844 G - 35 83 BRCA TCGA-BH-A18N NUP188 SNP Silent 9 131757730 C G 24 55 BRCA TCGA-BH-A18N IARS SNP Missense_Mutation 9 95013001 C T 19 47 BRCA TCGA-BH-A18P FRRS1 SNP Missense_Mutation 1 100185140 G A 33 41 BRCA TCGA-BH-A18P LOC126987 SNP Missense_Mutation 1 106623872 C T 30 53 BRCA TCGA-BH-A18P GSTM3 SNP Silent 1 110280959 C T 32 64 BRCA TCGA-BH-A18P C1orf51 SNP Missense_Mutation 1 150255964 G C 33 58 BRCA TCGA-BH-A18P RUSC1 SNP Silent 1 155294933 C T 32 62 BRCA TCGA-BH-A18P NES SNP Silent 1 156640299 C A 31 44 BRCA TCGA-BH-A18P RRNAD1 SNP Splice_site 1 156699007 C G 31 54 BRCA TCGA-BH-A18P CTRC SNP Missense_Mutation 1 15767045 G C 45 53 BRCA TCGA-BH-A18P CD1D SNP Missense_Mutation 1 158152865 G A 48 58 BRCA TCGA-BH-A18P CDK11A SNP Missense_Mutation 1 1647791 C T 32 79 BRCA TCGA-BH-A18P NME7 SNP Missense_Mutation 1 169102038 C G 32 84 BRCA TCGA-BH-A18P ABL2 SNP Silent 1 179095776 C T 32 76 BRCA TCGA-BH-A18P TDRD5 SNP Missense_Mutation 1 179632576 G C 33 75 BRCA TCGA-BH-A18P ASPM SNP Missense_Mutation 1 197071299 G A 41 67 BRCA TCGA-BH-A18P PTPRC SNP Missense_Mutation 1 198711494 G A 33 100 BRCA TCGA-BH-A18P LRRN2 SNP Missense_Mutation 1 204587427 C T 23 45 BRCA TCGA-BH-A18P SLC41A1 SNP Silent 1 205779276 G A 37 50 BRCA TCGA-BH-A18P LAMB3 SNP Missense_Mutation 1 209790817 C T 32 63 BRCA TCGA-BH-A18P LUZP1 SNP Missense_Mutation 1 23418627 C T 32 55 BRCA TCGA-BH-A18P HCRTR1 SNP Missense_Mutation 1 32090605 G A 39 92 BRCA TCGA-BH-A18P PHC2 SNP Missense_Mutation 1 33834190 C G 17 70 BRCA TCGA-BH-A18P SZT2 SNP Missense_Mutation 1 43892993 C G 29 70 BRCA TCGA-BH-A18P GPR153 SNP Silent 1 6313985 G A 37 51 BRCA TCGA-BH-A18P CAMTA1 SNP Silent 1 7309644 G A 37 54 BRCA TCGA-BH-A18P AS3MT SNP Nonsense_Mutation 10 104638240 C T 29 64 BRCA TCGA-BH-A18P NEBL SNP Missense_Mutation 10 21134276 C G 29 86 BRCA TCGA-BH-A18P PDSS1 SNP Missense_Mutation 10 26994296 G C 45 66 BRCA TCGA-BH-A18P VSTM4 SNP Silent 10 50227728 G A 40 30 BRCA TCGA-BH-A18P FAM21A SNP Splice_site 10 51827768 G A 47 67 BRCA TCGA-BH-A18P A1CF SNP Silent 10 52595937 G A 37 44 BRCA TCGA-BH-A18P MRVI1 SNP Missense_Mutation 11 10622555 G C 33 69 BRCA TCGA-BH-A18P ACAT1 SNP Missense_Mutation 11 108002665 C T 29 66 BRCA TCGA-BH-A18P ZBTB44 SNP Missense_Mutation 11 130131407 G A 45 99 BRCA TCGA-BH-A18P C11orf58 SNP Missense_Mutation 11 16776434 G C 41 60 BRCA TCGA-BH-A18P WT1 SNP Missense_Mutation 11 32414250 C T 19 100 BRCA TCGA-BH-A18P PAMR1 SNP Missense_Mutation 11 35515803 C T 29 76 BRCA TCGA-BH-A18P ENSG00000181943 SNP Missense_Mutation 11 55259086 G A 48 43 BRCA TCGA-BH-A18P OR1S2 SNP Missense_Mutation 11 57971065 G C 33 53 BRCA TCGA-BH-A18P GLYATL1 SNP Missense_Mutation 11 58714563 G A 45 49 BRCA TCGA-BH-A18P ENSG00000180923 SNP Missense_Mutation 11 6078656 G C 45 59 BRCA TCGA-BH-A18P ENSG00000180923 SNP Missense_Mutation 11 6078968 G C 33 61 BRCA TCGA-BH-A18P ENSG00000180923 SNP Silent 11 6079155 G A 41 43 BRCA TCGA-BH-A18P VWCE SNP Missense_Mutation 11 61026446 G C 33 74 BRCA TCGA-BH-A18P DNHD1 SNP Silent 11 6541509 G A 48 51 BRCA TCGA-BH-A18P ILK SNP Splice_Site 11 6631267 G A 44 89 BRCA TCGA-BH-A18P ARAP1 SNP Missense_Mutation 11 72409112 C T 30 73 BRCA TCGA-BH-A18P PGM2L1 SNP Silent 11 74062496 C G 29 61 BRCA TCGA-BH-A18P SLC25A22 SNP Missense_Mutation 11 792383 C G 32 44 BRCA TCGA-BH-A18P CD151 SNP Missense_Mutation 11 837971 C A 29 75 BRCA TCGA-BH-A18P CCDC82 SNP Missense_Mutation 11 96117522 T A 61 44 BRCA TCGA-BH-A18P DEPDC4 SNP Silent 12 100660753 C G 29 52 BRCA TCGA-BH-A18P SLC17A8 SNP Nonsense_Mutation 12 100813924 C G 29 66 BRCA TCGA-BH-A18P GAS2L3 SNP Silent 12 101018311 G A 33 50 BRCA TCGA-BH-A18P TPCN1 SNP Missense_Mutation 12 113704123 G A 37 97 BRCA TCGA-BH-A18P CIT SNP Silent 12 120166328 G A 45 65 BRCA TCGA-BH-A18P PUS1 SNP Missense_Mutation 12 132426061 C T 30 70 BRCA TCGA-BH-A18P HIST4H4 SNP Silent 12 14923905 G T 37 32 BRCA TCGA-BH-A18P DENND5B SNP Missense_Mutation 12 31545273 C G 29 85 BRCA TCGA-BH-A18P C12orf40 SNP Missense_Mutation 12 40041721 C T 17 51 BRCA TCGA-BH-A18P SCAF11 SNP Missense_Mutation 12 46321241 G A 33 59 BRCA TCGA-BH-A18P RPAP3 SNP Nonsense_Mutation 12 48062806 G A 45 64 BRCA TCGA-BH-A18P DIP2B SNP Silent 12 51097988 G T 47 61 BRCA TCGA-BH-A18P SCN8A SNP Missense_Mutation 12 52180367 G A 45 100 BRCA TCGA-BH-A18P ERBB3 SNP Missense_Mutation 12 56482607 C T 18 85 BRCA TCGA-BH-A18P SLC39A5 SNP Missense_Mutation 12 56626564 C T 29 49 BRCA TCGA-BH-A18P LRP1 SNP Missense_Mutation 12 57599437 C T 19 61 BRCA TCGA-BH-A18P NOP2 SNP Missense_Mutation 12 6677069 C G 30 86 BRCA TCGA-BH-A18P NINJ2 SNP Silent 12 675158 G A 33 83 BRCA TCGA-BH-A18P FAM155A SNP Missense_Mutation 13 108518787 G C 33 94 BRCA TCGA-BH-A18P TNFSF13B SNP Missense_Mutation 13 108922524 G A 41 54 BRCA TCGA-BH-A18P ATP12A SNP Silent 13 25264553 C T 29 60 BRCA TCGA-BH-A18P FLT1 SNP Missense_Mutation 13 29005385 G C 33 69 BRCA TCGA-BH-A18P SUGT1P3 SNP Silent 13 41495642 G A 33 54 BRCA TCGA-BH-A18P LRCH1 SNP Missense_Mutation 13 47127578 C T 31 55 BRCA TCGA-BH-A18P KPNA3 SNP Missense_Mutation 13 50276031 C T 29 100 BRCA TCGA-BH-A18P WDFY2 SNP Silent 13 52325491 G A 45 53 BRCA TCGA-BH-A18P TBC1D4 SNP Missense_Mutation 13 75866384 C T 29 97 BRCA TCGA-BH-A18P CDC42BPB SNP Missense_Mutation 14 103442325 C T 29 78 BRCA TCGA-BH-A18P BRF1 SNP Silent 14 105685609 C T 31 37 BRCA TCGA-BH-A18P PARP2 SNP Nonsense_Mutation 14 20824784 G A 47 99 BRCA TCGA-BH-A18P RNASE11 SNP Missense_Mutation 14 21052286 C G 30 50 BRCA TCGA-BH-A18P METTL17 SNP Missense_Mutation 14 21463019 G A 45 67 BRCA TCGA-BH-A18P BCL2L2-PABPN1 SNP Missense_Mutation 14 23791462 G A 37 97 BRCA TCGA-BH-A18P FOXA1 SNP Missense_Mutation 14 38061461 G C 33 65 BRCA TCGA-BH-A18P KTN1 SNP Missense_Mutation 14 56138368 G C 33 97 BRCA TCGA-BH-A18P DHRS7 SNP Silent 14 60616218 G A 45 50 BRCA TCGA-BH-A18P HIF1A SNP Missense_Mutation 14 62207737 C T 30 68 BRCA TCGA-BH-A18P PPP1R36 SNP Missense_Mutation 14 65041213 G A 45 63 BRCA TCGA-BH-A18P ADAM21 SNP Missense_Mutation 14 70924304 C G 29 48 BRCA TCGA-BH-A18P ADAM21 SNP Silent 14 70924844 C T 32 52 BRCA TCGA-BH-A18P MAP3K9 SNP Missense_Mutation 14 71267708 C T 30 61 BRCA TCGA-BH-A18P RBM25 SNP Silent 14 73570127 A G 11 59 BRCA TCGA-BH-A18P PSEN1 SNP Missense_Mutation 14 73637628 G A 45 100 BRCA TCGA-BH-A18P ACOT1 SNP Missense_Mutation 14 74010102 G A 45 55 BRCA TCGA-BH-A18P C14orf166B SNP Missense_Mutation 14 77304305 G C 45 61 BRCA TCGA-BH-A18P INO80 DEL Frame_Shift_Del 15 41384317 C - 32 94 BRCA TCGA-BH-A18P RPAP1 SNP Nonsense_Mutation 15 41821754 G A 37 82 BRCA TCGA-BH-A18P LCMT2 SNP Missense_Mutation 15 43621556 C G 32 77 BRCA TCGA-BH-A18P LCMT2 SNP Splice_Site 15 43621844 C T 32 56 BRCA TCGA-BH-A18P LCMT2 SNP Missense_Mutation 15 43622180 C T 30 60 BRCA TCGA-BH-A18P DUOX1 SNP Missense_Mutation 15 45440507 G A 42 55 BRCA TCGA-BH-A18P UNC13C SNP Missense_Mutation 15 54307326 G T 35 49 BRCA TCGA-BH-A18P GLCE SNP Missense_Mutation 15 69548380 C G 29 94 BRCA TCGA-BH-A18P NEO1 SNP Missense_Mutation 15 73428332 G A 45 61 BRCA TCGA-BH-A18P NTAN1 SNP Missense_Mutation 16 15135525 C G 29 81 BRCA TCGA-BH-A18P KIAA0430 SNP Silent 16 15728701 G A 33 54 BRCA TCGA-BH-A18P CACNG3 SNP Missense_Mutation 16 24372874 C T 31 84 BRCA TCGA-BH-A18P CCDC101 SNP Missense_Mutation 16 28602948 C T 30 77 BRCA TCGA-BH-A18P SPN SNP Nonsense_Mutation 16 29675524 G T 41 58 BRCA TCGA-BH-A18P DNAJA3 SNP Nonsense_Mutation 16 4484516 C T 29 82 BRCA TCGA-BH-A18P ADCY7 SNP Missense_Mutation 16 50341017 C G 32 47 BRCA TCGA-BH-A18P CHD9 SNP Silent 16 53337714 G A 41 49 BRCA TCGA-BH-A18P CCDC135 SNP Silent 16 57760057 G A 39 43 BRCA TCGA-BH-A18P CDH1 DEL Frame_Shift_Del 16 68772257 A - 11 60 BRCA TCGA-BH-A18P VAT1L SNP Silent 16 77859274 C T 31 55 BRCA TCGA-BH-A18P FANCA SNP Silent 16 89809343 G A 41 54 BRCA TCGA-BH-A18P ATAD5 SNP Missense_Mutation 17 29221881 C G 32 89 BRCA TCGA-BH-A18P RHOT1 SNP Missense_Mutation 17 30500868 G C 33 100 BRCA TCGA-BH-A18P RHOT1 SNP Silent 17 30551656 C G 29 83 BRCA TCGA-BH-A18P OR1A1 SNP Silent 17 3119721 C T 19 50 BRCA TCGA-BH-A18P LASP1 SNP Missense_Mutation 17 37054741 G A 33 82 BRCA TCGA-BH-A18P ERBB2 SNP Missense_Mutation 17 37880220 T C 63 90 BRCA TCGA-BH-A18P WIPF2 SNP Missense_Mutation 17 38421179 C A 30 97 BRCA TCGA-BH-A18P WIPF2 SNP Missense_Mutation 17 38421273 C G 32 97 BRCA TCGA-BH-A18P ZZEF1 SNP Missense_Mutation 17 3981281 G A 41 86 BRCA TCGA-BH-A18P LOC100131693 SNP Missense_Mutation 17 47501653 G C 36 65 BRCA TCGA-BH-A18P RNF43 SNP Missense_Mutation 17 56435317 G A 37 74 BRCA TCGA-BH-A18P RNF157 SNP Missense_Mutation 17 74154505 G A 33 76 BRCA TCGA-BH-A18P ST6GALNAC1 SNP Missense_Mutation 17 74623561 C G 32 61 BRCA TCGA-BH-A18P NARF SNP Missense_Mutation 17 80441612 G A 41 81 BRCA TCGA-BH-A18P WDR45L SNP Nonsense_Mutation 17 80583301 G A 45 94 BRCA TCGA-BH-A18P MPPE1 SNP Silent 18 11886744 G A 33 53 BRCA TCGA-BH-A18P ANKRD30B SNP Missense_Mutation 18 14850226 C G 29 65 BRCA TCGA-BH-A18P ESCO1 SNP Missense_Mutation 18 19146114 C A 29 62 BRCA TCGA-BH-A18P FAM59A SNP Silent 18 29848311 C T 32 68 BRCA TCGA-BH-A18P ME2 SNP Missense_Mutation 18 48452266 G C 33 63 BRCA TCGA-BH-A18P WDR7 SNP Nonsense_Mutation 18 54606599 C T 29 84 BRCA TCGA-BH-A18P ST8SIA3 SNP Missense_Mutation 18 55020080 G A 45 61 BRCA TCGA-BH-A18P DNM2 SNP Silent 19 10870471 C T 29 69 BRCA TCGA-BH-A18P FARSA SNP Missense_Mutation 19 13041152 C G 30 75 BRCA TCGA-BH-A18P DNAJB1 SNP Missense_Mutation 19 14629014 C G 29 94 BRCA TCGA-BH-A18P RASAL3 SNP Silent 19 15563564 G T 37 49 BRCA TCGA-BH-A18P ATP8B3 SNP Missense_Mutation 19 1783041 T C 64 44 BRCA TCGA-BH-A18P ATP13A1 SNP Missense_Mutation 19 19757018 C T 31 52 BRCA TCGA-BH-A18P ZNF90 SNP Missense_Mutation 19 20229984 G C 33 65 BRCA TCGA-BH-A18P ZNF675 SNP Missense_Mutation 19 23836556 C G 32 79 BRCA TCGA-BH-A18P ZNF345 SNP Missense_Mutation 19 37368413 G C 33 63 BRCA TCGA-BH-A18P TJP3 SNP Missense_Mutation 19 3750636 C T 30 68 BRCA TCGA-BH-A18P ZNF585B SNP Missense_Mutation 19 37676695 C G 29 64 BRCA TCGA-BH-A18P C19orf33 SNP Missense_Mutation 19 38794918 G A 41 47 BRCA TCGA-BH-A18P ANKRD24 SNP Splice_Site 19 4186270 G T 35 45 BRCA TCGA-BH-A18P TMIGD2 SNP Silent 19 4292689 G A 39 46 BRCA TCGA-BH-A18P STAP2 SNP Silent 19 4325220 G C 47 48 BRCA TCGA-BH-A18P ZNF230 SNP Missense_Mutation 19 44512960 G A 41 68 BRCA TCGA-BH-A18P PRKD2 SNP Missense_Mutation 19 47201003 T A 60 61 BRCA TCGA-BH-A18P LIG1 SNP Silent 19 48643316 G A 45 53 BRCA TCGA-BH-A18P ZNF613 SNP Missense_Mutation 19 52448430 G A 45 60 BRCA TCGA-BH-A18P ZNF415 SNP Missense_Mutation 19 53612832 C T 29 50 BRCA TCGA-BH-A18P PRKCG SNP Silent 19 54407909 C T 19 49 BRCA TCGA-BH-A18P KIR2DL4 SNP Missense_Mutation 19 55325488 G C 45 55 BRCA TCGA-BH-A18P PEG3 SNP Missense_Mutation 19 57325872 G T 41 55 BRCA TCGA-BH-A18P PEG3 SNP Silent 19 57327380 G A 37 40 BRCA TCGA-BH-A18P ZNF135 SNP Silent 19 58578710 C T 30 58 BRCA TCGA-BH-A18P ZNF544 SNP Silent 19 58773061 C T 29 62 BRCA TCGA-BH-A18P MUC16 SNP Missense_Mutation 19 9045834 C T 32 70 BRCA TCGA-BH-A18P MUC16 SNP Missense_Mutation 19 9075373 C T 30 43 BRCA TCGA-BH-A18P MYO7B SNP Nonsense_Mutation 2 128389200 C A 18 66 BRCA TCGA-BH-A18P LOC100288504 SNP Silent 2 128410962 G A 40 34 BRCA TCGA-BH-A18P GALNT5 SNP Missense_Mutation 2 158142577 C T 31 75 BRCA TCGA-BH-A18P PKP4 SNP Silent 2 159537087 G A 36 67 BRCA TCGA-BH-A18P MYCN SNP Splice_site 2 16082186 G A 37 51 BRCA TCGA-BH-A18P FAP SNP Nonsense_Mutation 2 163044822 C T 30 98 BRCA TCGA-BH-A18P XIRP2 SNP Nonsense_Mutation 2 167760155 C T 29 59 BRCA TCGA-BH-A18P TTN SNP Nonsense_Mutation 2 179483183 C A 32 100 BRCA TCGA-BH-A18P TTN SNP Missense_Mutation 2 179483357 C G 32 63 BRCA TCGA-BH-A18P TTN SNP Missense_Mutation 2 179613239 G C 33 54 BRCA TCGA-BH-A18P TTN SNP Missense_Mutation 2 179640575 C G 32 99 BRCA TCGA-BH-A18P GLS SNP Nonsense_Mutation 2 191760405 C T 29 80 BRCA TCGA-BH-A18P NBEAL1 SNP Missense_Mutation 2 203995183 G C 33 69 BRCA TCGA-BH-A18P ZDBF2 SNP Missense_Mutation 2 207170370 C T 29 75 BRCA TCGA-BH-A18P APOB SNP Missense_Mutation 2 21242743 C G 30 71 BRCA TCGA-BH-A18P ABCA12 SNP Missense_Mutation 2 215815648 C G 32 67 BRCA TCGA-BH-A18P SLC23A3 SNP Missense_Mutation 2 220032957 G A 45 60 BRCA TCGA-BH-A18P KCNJ13 SNP Silent 2 233633333 G C 33 53 BRCA TCGA-BH-A18P KLHL30 SNP Splice_Site 2 239057647 G A 33 81 BRCA TCGA-BH-A18P CAD SNP Nonsense_Mutation 2 27449092 C T 29 71 BRCA TCGA-BH-A18P LRPPRC SNP Missense_Mutation 2 44202316 C G 32 58 BRCA TCGA-BH-A18P FSHR SNP Missense_Mutation 2 49195939 T C 60 60 BRCA TCGA-BH-A18P CCDC88A SNP Missense_Mutation 2 55591121 C G 29 96 BRCA TCGA-BH-A18P VPS54 SNP Missense_Mutation 2 64148438 C G 32 96 BRCA TCGA-BH-A18P PROKR1 SNP Silent 2 68873196 C T 29 55 BRCA TCGA-BH-A18P ANXA4 SNP Missense_Mutation 2 70033627 G A 45 74 BRCA TCGA-BH-A18P POLR1A SNP Missense_Mutation 2 86258620 C G 29 79 BRCA TCGA-BH-A18P MBOAT2 SNP Missense_Mutation 2 9000774 G C 33 84 BRCA TCGA-BH-A18P PYGB SNP Silent 20 25229006 C T 31 70 BRCA TCGA-BH-A18P REM1 SNP Missense_Mutation 20 30064441 G A 45 50 BRCA TCGA-BH-A18P KIF3B SNP Silent 20 30898414 C T 29 59 BRCA TCGA-BH-A18P RBM12 SNP Missense_Mutation 20 34241075 G A 41 70 BRCA TCGA-BH-A18P ATRN SNP Missense_Mutation 20 3541448 C G 32 98 BRCA TCGA-BH-A18P RALGAPB SNP Missense_Mutation 20 37117154 G A 33 85 BRCA TCGA-BH-A18P SGK2 SNP Missense_Mutation 20 42195143 C G 32 69 BRCA TCGA-BH-A18P WFDC11 SNP Missense_Mutation 20 44279195 G C 33 54 BRCA TCGA-BH-A18P CDH22 SNP Missense_Mutation 20 44828148 G T 38 59 BRCA TCGA-BH-A18P NTSR1 SNP Silent 20 61340967 C T 31 49 BRCA TCGA-BH-A18P URB1 SNP Missense_Mutation 21 33732208 G C 33 58 BRCA TCGA-BH-A18P DYRK1A SNP Missense_Mutation 21 38884772 G C 45 99 BRCA TCGA-BH-A18P COL6A2 SNP Silent 21 47549150 C G 30 72 BRCA TCGA-BH-A18P TBC1D10A SNP Missense_Mutation 22 30722713 C T 27 61 BRCA TCGA-BH-A18P CSF2RB SNP Nonsense_Mutation 22 37325762 C T 23 67 BRCA TCGA-BH-A18P MLC1 SNP Missense_Mutation 22 50512736 G C 33 77 BRCA TCGA-BH-A18P NCAPH2 SNP Missense_Mutation 22 50961305 G A 38 71 BRCA TCGA-BH-A18P WWC3 SNP Missense_Mutation 23 10102535 C T 27 51 BRCA TCGA-BH-A18P GUCY2F SNP Silent 23 108638635 G A 34 60 BRCA TCGA-BH-A18P NKAP SNP Nonsense_Mutation 23 119059227 G A 37 59 BRCA TCGA-BH-A18P THOC2 SNP Missense_Mutation 23 122771967 G C 45 56 BRCA TCGA-BH-A18P ODZ1 SNP Silent 23 123556288 C T 31 45 BRCA TCGA-BH-A18P ODZ1 SNP Missense_Mutation 23 123556368 G A 40 77 BRCA TCGA-BH-A18P GPR112 SNP Missense_Mutation 23 135427024 A G 14 46 BRCA TCGA-BH-A18P FGF13 SNP Missense_Mutation 23 137717749 G A 45 85 BRCA TCGA-BH-A18P OFD1 SNP Missense_Mutation 23 13778539 C G 31 68 BRCA TCGA-BH-A18P SLC25A6 SNP Silent 23 1508405 G A 33 73 BRCA TCGA-BH-A18P ZFP92 SNP Silent 23 152686582 C T 31 53 BRCA TCGA-BH-A18P RPL10 SNP Silent 23 153628919 G C 45 77 BRCA TCGA-BH-A18P MBTPS2 SNP Missense_Mutation 23 21900634 C G 32 96 BRCA TCGA-BH-A18P CXorf22 SNP Silent 23 35966471 C G 29 48 BRCA TCGA-BH-A18P TSPAN7 SNP Silent 23 38420832 G A 45 70 BRCA TCGA-BH-A18P HUWE1 SNP Missense_Mutation 23 53644041 C A 31 93 BRCA TCGA-BH-A18P YIPF6 SNP Missense_Mutation 23 67742612 C G 29 91 BRCA TCGA-BH-A18P HDHD1 SNP Silent 23 7023749 G A 33 49 BRCA TCGA-BH-A18P BRWD3 SNP Missense_Mutation 23 79978166 C G 30 96 BRCA TCGA-BH-A18P POLQ SNP Nonsense_Mutation 3 121228970 G A 45 53 BRCA TCGA-BH-A18P RBP1 SNP Missense_Mutation 3 139244741 C T 29 55 BRCA TCGA-BH-A18P RBP1 SNP Missense_Mutation 3 139258551 G A 41 70 BRCA TCGA-BH-A18P SLC25A36 SNP Silent 3 140695209 C T 32 76 BRCA TCGA-BH-A18P CPB1 SNP Missense_Mutation 3 148559668 G A 33 97 BRCA TCGA-BH-A18P TIPARP SNP Missense_Mutation 3 156422677 G C 33 78 BRCA TCGA-BH-A18P SMC4 SNP Missense_Mutation 3 160122246 G A 37 100 BRCA TCGA-BH-A18P TBL1XR1 INS Frame_Shift_Ins 3 176769295 - TA 28 81 BRCA TCGA-BH-A18P PSMD2 SNP Missense_Mutation 3 184019425 C T 29 94 BRCA TCGA-BH-A18P FBXL2 SNP Splice_Site 3 33420176 G C 33 99 BRCA TCGA-BH-A18P SCN5A SNP Missense_Mutation 3 38627460 C T 22 97 BRCA TCGA-BH-A18P FYCO1 SNP Missense_Mutation 3 46007876 G C 47 64 BRCA TCGA-BH-A18P CADPS SNP Missense_Mutation 3 62477092 C G 32 100 BRCA TCGA-BH-A18P KIAA1109 SNP Missense_Mutation 4 123201085 C T 32 100 BRCA TCGA-BH-A18P PCDH18 SNP Missense_Mutation 4 138451272 G C 45 54 BRCA TCGA-BH-A18P SH3D19 SNP Missense_Mutation 4 152056281 C T 29 83 BRCA TCGA-BH-A18P KIAA0922 SNP Missense_Mutation 4 154544085 G C 41 86 BRCA TCGA-BH-A18P CTSO SNP Missense_Mutation 4 156849527 C T 32 71 BRCA TCGA-BH-A18P ODZ3 SNP Silent 4 183635307 G A 48 45 BRCA TCGA-BH-A18P REST SNP Missense_Mutation 4 57796907 T G 59 44 BRCA TCGA-BH-A18P EPHA5 SNP Missense_Mutation 4 66231763 C T 30 86 BRCA TCGA-BH-A18P UGT2B15 SNP Missense_Mutation 4 69536210 G T 35 62 BRCA TCGA-BH-A18P UGT2B11 SNP Silent 4 70070294 G A 41 49 BRCA TCGA-BH-A18P RCHY1 SNP Missense_Mutation 4 76415808 G C 45 77 BRCA TCGA-BH-A18P SDAD1 SNP Missense_Mutation 4 76888470 G C 33 62 BRCA TCGA-BH-A18P DMXL1 SNP Silent 5 118464937 G A 45 52 BRCA TCGA-BH-A18P DMXL1 SNP Missense_Mutation 5 118582789 G C 45 99 BRCA TCGA-BH-A18P DMXL1 SNP Missense_Mutation 5 118582887 G C 45 54 BRCA TCGA-BH-A18P ANKHD1 SNP Missense_Mutation 5 139908070 C G 32 81 BRCA TCGA-BH-A18P IK SNP Silent 5 140037204 G T 45 58 BRCA TCGA-BH-A18P PCDHA9 SNP Missense_Mutation 5 140229695 G A 37 94 BRCA TCGA-BH-A18P SH3TC2 SNP Nonsense_Mutation 5 148417943 G A 45 70 BRCA TCGA-BH-A18P ATP10B SNP Silent 5 160059229 C T 32 46 BRCA TCGA-BH-A18P MYO10 SNP Silent 5 16670938 G C 45 51 BRCA TCGA-BH-A18P RANBP17 SNP Silent 5 170722917 G A 45 56 BRCA TCGA-BH-A18P TSPAN17 SNP Silent 5 176081937 C G 29 67 BRCA TCGA-BH-A18P HNRNPH1 SNP Silent 5 179044636 G T 45 51 BRCA TCGA-BH-A18P ZFR SNP Silent 5 32364313 C T 29 53 BRCA TCGA-BH-A18P CARD6 SNP Nonsense_Mutation 5 40854270 C T 29 63 BRCA TCGA-BH-A18P PLCXD3 SNP Nonsense_Mutation 5 41382448 G A 37 84 BRCA TCGA-BH-A18P MAP3K1 DEL Frame_Shift_Del 5 56155605 C - 30 74 BRCA TCGA-BH-A18P MAST4 SNP Missense_Mutation 5 66084606 C T 31 66 BRCA TCGA-BH-A18P PIK3R1 SNP Missense_Mutation 5 67592087 G A 45 100 BRCA TCGA-BH-A18P SLC30A5 SNP Missense_Mutation 5 68410315 G A 33 100 BRCA TCGA-BH-A18P REV3L SNP Missense_Mutation 6 111695851 C G 18 54 BRCA TCGA-BH-A18P RSPH4A SNP Nonsense_Mutation 6 116938343 C G 29 58 BRCA TCGA-BH-A18P DCBLD1 SNP Missense_Mutation 6 117846569 C T 32 52 BRCA TCGA-BH-A18P TAAR2 SNP Missense_Mutation 6 132939037 C G 32 77 BRCA TCGA-BH-A18P CD83 SNP Silent 6 14131891 C T 21 48 BRCA TCGA-BH-A18P STXBP5 SNP Silent 6 147684754 G C 40 27 BRCA TCGA-BH-A18P ULBP3 SNP Missense_Mutation 6 150387087 C G 32 20 BRCA TCGA-BH-A18P SYNE1 SNP Silent 6 152650988 C T 29 62 BRCA TCGA-BH-A18P FNDC1 SNP Missense_Mutation 6 159653669 G A 33 55 BRCA TCGA-BH-A18P MLLT4 SNP Missense_Mutation 6 168307891 C G 32 55 BRCA TCGA-BH-A18P KCTD20 SNP Missense_Mutation 6 36447445 C G 32 56 BRCA TCGA-BH-A18P FILIP1 SNP Missense_Mutation 6 76024427 G C 33 88 BRCA TCGA-BH-A18P MYO6 SNP Missense_Mutation 6 76576321 G C 42 100 BRCA TCGA-BH-A18P HTR1B SNP Silent 6 78172401 C T 29 84 BRCA TCGA-BH-A18P MDN1 SNP Missense_Mutation 6 90381945 C T 29 95 BRCA TCGA-BH-A18P SLC26A5 SNP Missense_Mutation 7 103020959 C T 29 85 BRCA TCGA-BH-A18P NRCAM SNP Silent 7 107820851 C T 32 39 BRCA TCGA-BH-A18P WASL SNP Splice_Site 7 123324635 C G 32 96 BRCA TCGA-BH-A18P PLXNA4 SNP Silent 7 132174147 G A 45 71 BRCA TCGA-BH-A18P TRIM24 SNP Silent 7 138210052 G A 45 53 BRCA TCGA-BH-A18P HIPK2 SNP Missense_Mutation 7 139288862 C G 32 73 BRCA TCGA-BH-A18P MGAM SNP Silent 7 141705408 C T 29 51 BRCA TCGA-BH-A18P MLL3 SNP Missense_Mutation 7 151878971 C G 32 100 BRCA TCGA-BH-A18P ESYT2 SNP Missense_Mutation 7 158560422 G C 33 60 BRCA TCGA-BH-A18P DNAH11 SNP Missense_Mutation 7 21599382 G C 33 50 BRCA TCGA-BH-A18P FKBP9 SNP Silent 7 33035890 G C 45 57 BRCA TCGA-BH-A18P UPP1 SNP Missense_Mutation 7 48147085 C G 25 64 BRCA TCGA-BH-A18P AUTS2 SNP Silent 7 69064930 C T 29 55 BRCA TCGA-BH-A18P AKAP9 SNP Missense_Mutation 7 91709273 C T 29 59 BRCA TCGA-BH-A18P CSMD3 SNP Missense_Mutation 8 113364680 C T 20 100 BRCA TCGA-BH-A18P ZNF623 SNP Missense_Mutation 8 144732325 C G 29 57 BRCA TCGA-BH-A18P ZNF623 SNP Nonsense_Mutation 8 144732550 C T 29 66 BRCA TCGA-BH-A18P HEATR7A SNP Silent 8 145246704 C T 30 51 BRCA TCGA-BH-A18P ZNF34 SNP Silent 8 145999827 C T 29 64 BRCA TCGA-BH-A18P LOXL2 SNP Silent 8 23177557 C T 29 68 BRCA TCGA-BH-A18P KAT6A SNP Missense_Mutation 8 41798588 C G 32 42 BRCA TCGA-BH-A18P NCOA2 SNP Nonsense_Mutation 8 71069225 G A 45 99 BRCA TCGA-BH-A18P ZNF704 SNP Silent 8 81599539 G A 39 51 BRCA TCGA-BH-A18P CPQ SNP Missense_Mutation 8 98041678 G A 33 77 BRCA TCGA-BH-A18P ZNF618 SNP Missense_Mutation 9 116811020 G A 37 94 BRCA TCGA-BH-A18P TLR4 SNP Nonsense_Mutation 9 120474783 C G 29 54 BRCA TCGA-BH-A18P GOLGA2 SNP Missense_Mutation 9 131023779 C A 30 52 BRCA TCGA-BH-A18P ASB6 SNP Missense_Mutation 9 132402823 C T 29 81 BRCA TCGA-BH-A18P USP20 SNP Silent 9 132637592 G A 33 73 BRCA TCGA-BH-A18P KCNT1 SNP Missense_Mutation 9 138678205 C T 23 74 BRCA TCGA-BH-A18P C9orf131 SNP Missense_Mutation 9 35043842 G A 33 51 BRCA TCGA-BH-A18P FRMPD1 SNP Silent 9 37692653 G A 33 54 BRCA TCGA-BH-A18P ALDH1A1 SNP Missense_Mutation 9 75516128 G A 45 98 BRCA TCGA-BH-A18Q FLG SNP Silent 1 152283132 C A 17 44 BRCA TCGA-BH-A18Q F5 SNP Missense_Mutation 1 169511020 T C 52 50 BRCA TCGA-BH-A18Q NCF2 SNP Silent 1 183543637 C G 31 59 BRCA TCGA-BH-A18Q HMCN1 SNP Missense_Mutation 1 185815169 G C 36 89 BRCA TCGA-BH-A18Q HMCN1 SNP Missense_Mutation 1 186135346 G T 46 100 BRCA TCGA-BH-A18Q LRRN2 SNP Silent 1 204587204 G C 41 60 BRCA TCGA-BH-A18Q MIA3 SNP Missense_Mutation 1 222818914 G C 45 94 BRCA TCGA-BH-A18Q ZBTB40 SNP Nonsense_Mutation 1 22835081 C G 29 72 BRCA TCGA-BH-A18Q OBSCN SNP Missense_Mutation 1 228559643 C A 21 52 BRCA TCGA-BH-A18Q SLC18A2 SNP Silent 10 119017348 G A 34 66 BRCA TCGA-BH-A18Q MSS51 SNP Missense_Mutation 10 75184874 G A 48 92 BRCA TCGA-BH-A18Q DUPD1 SNP Missense_Mutation 10 76797815 C T 19 98 BRCA TCGA-BH-A18Q MARK2 SNP Missense_Mutation 11 63665731 G C 44 58 BRCA TCGA-BH-A18Q ALDH3B2 SNP Missense_Mutation 11 67431876 G T 48 59 BRCA TCGA-BH-A18Q ACER3 SNP Missense_Mutation 11 76572075 G T 41 76 BRCA TCGA-BH-A18Q ACACB SNP Missense_Mutation 12 109617839 C A 17 98 BRCA TCGA-BH-A18Q SPPL3 SNP Missense_Mutation 12 121248621 C T 18 93 BRCA TCGA-BH-A18Q KCNH3 SNP Silent 12 49951310 T G 55 48 BRCA TCGA-BH-A18Q GPR84 SNP Missense_Mutation 12 54756651 C G 25 52 BRCA TCGA-BH-A18Q CD163 SNP Missense_Mutation 12 7640285 G C 42 57 BRCA TCGA-BH-A18Q LOC283398 SNP Silent 12 94942076 C T 22 59 BRCA TCGA-BH-A18Q UGGT2 SNP Missense_Mutation 13 96536771 C G 29 98 BRCA TCGA-BH-A18Q THBS1 SNP Splice_site 15 39880727 T A 58 93 BRCA TCGA-BH-A18Q EHD4 SNP Silent 15 42192879 G A 43 47 BRCA TCGA-BH-A18Q ABCC12 SNP Silent 16 48173212 C T 17 62 BRCA TCGA-BH-A18Q PMFBP1 SNP Splice_site 16 72198814 G A 38 42 BRCA TCGA-BH-A18Q ZNF778 SNP Missense_Mutation 16 89293296 G C 47 44 BRCA TCGA-BH-A18Q LOC100287244 DEL Frame_Shift_Del 17 20908098 AGCCAATAGTGGAGCTGCG - 7 46 BRCA TCGA-BH-A18Q LOC100287244 SNP Silent 17 20908116 G C 39 57 BRCA TCGA-BH-A18Q NFE2L1 SNP Missense_Mutation 17 46136186 C T 30 63 BRCA TCGA-BH-A18Q PHB SNP Missense_Mutation 17 47486378 C G 24 51 BRCA TCGA-BH-A18Q AIPL1 SNP Missense_Mutation 17 6337305 C A 24 62 BRCA TCGA-BH-A18Q CASKIN2 SNP Missense_Mutation 17 73502696 C A 21 68 BRCA TCGA-BH-A18Q MGAT5B DEL Frame_Shift_Del 17 74900382 GTGGACGGCACCGA - 44 89 BRCA TCGA-BH-A18Q TP53 INS Frame_Shift_Ins 17 7579458 - TGCA 44 47 BRCA TCGA-BH-A18Q DNAH17 SNP Silent 17 76492022 G A 45 55 BRCA TCGA-BH-A18Q SPIRE1 SNP Missense_Mutation 18 12452354 T C 49 77 BRCA TCGA-BH-A18Q SOCS6 SNP Missense_Mutation 18 67992965 T A 60 91 BRCA TCGA-BH-A18Q ATP9B SNP Missense_Mutation 18 77037109 G C 33 97 BRCA TCGA-BH-A18Q EMR2 SNP Missense_Mutation 19 14883280 C G 20 44 BRCA TCGA-BH-A18Q SIN3B DEL Frame_Shift_Del 19 16982088 GGAGCCTGCT - 39 85 BRCA TCGA-BH-A18Q SERTAD3 SNP Missense_Mutation 19 40947491 G A 42 73 BRCA TCGA-BH-A18Q ZFP28 SNP Missense_Mutation 19 57066120 C G 21 63 BRCA TCGA-BH-A18Q PEG3 SNP Nonsense_Mutation 19 57286204 G T 45 68 BRCA TCGA-BH-A18Q EDAR SNP Missense_Mutation 2 109513664 G A 47 98 BRCA TCGA-BH-A18Q ACVR2A SNP Silent 2 148657335 T G 53 51 BRCA TCGA-BH-A18Q DNAJC10 SNP Missense_Mutation 2 183608386 C T 23 95 BRCA TCGA-BH-A18Q INPP4A SNP Splice_Site 2 99189391 G A 44 97 BRCA TCGA-BH-A18Q PAX1 SNP Silent 20 21687302 C A 27 40 BRCA TCGA-BH-A18Q CEP250 SNP Silent 20 34054871 C T 30 55 BRCA TCGA-BH-A18Q COL6A2 SNP Missense_Mutation 21 47552440 G A 37 96 BRCA TCGA-BH-A18Q CECR2 SNP Missense_Mutation 22 18020472 C A 18 67 BRCA TCGA-BH-A18Q PLXNB2 SNP Silent 22 50717396 C T 23 1 BRCA TCGA-BH-A18Q MCF2 SNP Silent 23 138689912 C T 32 54 BRCA TCGA-BH-A18Q FMR1 SNP Missense_Mutation 23 147026507 C T 19 49 BRCA TCGA-BH-A18Q ZBTB20 SNP Missense_Mutation 3 114069805 T G 56 88 BRCA TCGA-BH-A18Q SI SNP Missense_Mutation 3 164727132 C G 32 59 BRCA TCGA-BH-A18Q CTNNB1 SNP Silent 3 41266593 G A 33 65 BRCA TCGA-BH-A18Q EPHA3 DEL Frame_Shift_Del 3 89478293 TGGTTCCT - 51 61 BRCA TCGA-BH-A18Q COL25A1 INS Frame_Shift_Ins 4 109767306 - T 41 84 BRCA TCGA-BH-A18Q LPHN3 SNP Missense_Mutation 4 62936563 C A 17 65 BRCA TCGA-BH-A18Q TADA2B SNP Missense_Mutation 4 7056404 C G 27 82 BRCA TCGA-BH-A18Q SLCO6A1 SNP Silent 5 101834402 C T 18 43 BRCA TCGA-BH-A18Q LMNB1 SNP Missense_Mutation 5 126146015 G C 35 49 BRCA TCGA-BH-A18Q PCDHGA1 SNP Silent 5 140712321 T A 54 32 BRCA TCGA-BH-A18Q PPARGC1B SNP Missense_Mutation 5 149200117 A C 2 49 BRCA TCGA-BH-A18Q HMGCS1 SNP Silent 5 43298903 C T 32 60 BRCA TCGA-BH-A18Q SLC38A9 SNP Silent 5 54965418 T C 51 53 BRCA TCGA-BH-A18Q MCHR2 SNP Missense_Mutation 6 100368976 T C 49 82 BRCA TCGA-BH-A18Q COL10A1 SNP Missense_Mutation 6 116443059 G A 43 69 BRCA TCGA-BH-A18Q DSE SNP Missense_Mutation 6 116720652 C A 30 80 BRCA TCGA-BH-A18Q SAMD3 SNP Nonsense_Mutation 6 130475973 A C 12 54 BRCA TCGA-BH-A18Q AKAP12 SNP Missense_Mutation 6 151674861 C T 20 62 BRCA TCGA-BH-A18Q RGS17 SNP Missense_Mutation 6 153332893 C G 20 100 BRCA TCGA-BH-A18Q OPRM1 SNP Missense_Mutation 6 154412258 A G 9 94 BRCA TCGA-BH-A18Q TULP4 SNP Splice_Site 6 158915879 G T 44 100 BRCA TCGA-BH-A18Q KIF13A SNP Missense_Mutation 6 17856279 A T 1 91 BRCA TCGA-BH-A18Q KIF13A SNP Missense_Mutation 6 17987307 A G 9 48 BRCA TCGA-BH-A18Q BTN3A3 SNP Missense_Mutation 6 26448491 G C 34 53 BRCA TCGA-BH-A18Q C2 SNP Splice_site 6 31895941 C T 19 53 BRCA TCGA-BH-A18Q DAAM2 SNP Missense_Mutation 6 39869637 C A 24 53 BRCA TCGA-BH-A18Q F13A1 SNP Missense_Mutation 6 6145994 G T 43 69 BRCA TCGA-BH-A18Q MUC12 SNP Missense_Mutation 7 100635586 A T 6 47 BRCA TCGA-BH-A18Q AASS DEL Splice_Site 7 121721545 GTCACTCAC - 36 62 BRCA TCGA-BH-A18Q UBE3C SNP Missense_Mutation 7 157016026 C T 21 84 BRCA TCGA-BH-A18Q CBX3 SNP Missense_Mutation 7 26248127 A G 16 54 BRCA TCGA-BH-A18Q ASH2L SNP Missense_Mutation 8 37972459 C A 22 99 BRCA TCGA-BH-A18Q ASPH DEL In_Frame_Del 8 62479849 CTC - 32 75 BRCA TCGA-BH-A18Q RLN1 SNP Missense_Mutation 9 5335559 T C 49 37 BRCA TCGA-BH-A18R AMIGO1 SNP Missense_Mutation 1 110050151 T G 59 65 BRCA TCGA-BH-A18R POGK SNP Missense_Mutation 1 166819372 G C 39 70 BRCA TCGA-BH-A18R CCDC18 DEL Frame_Shift_Del 1 93701816 G - 47 53 BRCA TCGA-BH-A18R DNAH10 SNP Silent 12 124349244 C A 30 49 BRCA TCGA-BH-A18R USPL1 SNP Missense_Mutation 13 31205227 C A 30 53 BRCA TCGA-BH-A18R FAM194B SNP Missense_Mutation 13 46124100 A T 15 35 BRCA TCGA-BH-A18R RYR3 SNP Silent 15 34113500 C T 32 32 BRCA TCGA-BH-A18R LINC00273 SNP Silent 16 33961669 G T 39 52 BRCA TCGA-BH-A18R TOB1 SNP Missense_Mutation 17 48941080 G T 33 98 BRCA TCGA-BH-A18R ATCAY SNP Missense_Mutation 19 3909567 T C 51 89 BRCA TCGA-BH-A18R PSG8 SNP Missense_Mutation 19 43262178 C G 29 60 BRCA TCGA-BH-A18R MUC16 SNP Silent 19 9063011 C T 25 48 BRCA TCGA-BH-A18R ACOXL SNP Missense_Mutation 2 111875316 T A 64 58 BRCA TCGA-BH-A18R POLR1B SNP Silent 2 113317039 G A 46 55 BRCA TCGA-BH-A18R BFSP1 SNP Missense_Mutation 20 17474951 G C 47 50 BRCA TCGA-BH-A18R TBL1XR1 INS Frame_Shift_Ins 3 176769295 - TA 28 81 BRCA TCGA-BH-A18R FAM107A SNP Missense_Mutation 3 58552971 C G 28 62 BRCA TCGA-BH-A18R PITX2 SNP Nonsense_Mutation 4 111539734 G C 40 62 BRCA TCGA-BH-A18R SLC30A9 SNP Missense_Mutation 4 42069113 C G 31 100 BRCA TCGA-BH-A18R PCDHGB5 SNP Missense_Mutation 5 140778016 G A 42 56 BRCA TCGA-BH-A18R ADGB SNP Missense_Mutation 6 147123111 A C 13 42 BRCA TCGA-BH-A18R AKAP12 SNP Silent 6 151672994 G A 35 60 BRCA TCGA-BH-A18R FLNC SNP Silent 7 128477752 C T 19 45 BRCA TCGA-BH-A18R DGKI SNP Missense_Mutation 7 137374734 C T 23 89 BRCA TCGA-BH-A18R ST6GALNAC4 SNP Missense_Mutation 9 130670691 G T 41 95 BRCA TCGA-BH-A18R ARHGEF39 SNP Missense_Mutation 9 35664108 T G 64 73 BRCA TCGA-BH-A18R RECK SNP Silent 9 36052308 T C 51 51 BRCA TCGA-BH-A18R SPIN1 SNP Missense_Mutation 9 91090014 G C 35 98 BRCA TCGA-BH-A18S HCN3 SNP Missense_Mutation 1 155252422 C T 27 76 BRCA TCGA-BH-A18S ARHGEF2 SNP Silent 1 155932874 C T 21 46 BRCA TCGA-BH-A18S STK40 SNP Missense_Mutation 1 36807418 C T 31 80 BRCA TCGA-BH-A18S SLC35D1 SNP Silent 1 67519643 C A 31 56 BRCA TCGA-BH-A18S CCDC147 SNP Silent 10 106153122 T C 61 59 BRCA TCGA-BH-A18S TAOK3 SNP Missense_Mutation 12 118619257 C A 24 66 BRCA TCGA-BH-A18S ATF7IP SNP Missense_Mutation 12 14650900 G A 47 88 BRCA TCGA-BH-A18S KRAS DEL In_Frame_Del 12 25362744 CTTTGT - 20 83 BRCA TCGA-BH-A18S KCNH3 SNP Missense_Mutation 12 49937716 G A 40 97 BRCA TCGA-BH-A18S FBN1 SNP Silent 15 48788403 C A 29 57 BRCA TCGA-BH-A18S PLEKHG4 SNP Missense_Mutation 16 67320712 C T 27 62 BRCA TCGA-BH-A18S GIT1 SNP Missense_Mutation 17 27909785 C G 32 95 BRCA TCGA-BH-A18S CCDC57 SNP Missense_Mutation 17 80159567 T A 62 82 BRCA TCGA-BH-A18S MEX3C SNP Missense_Mutation 18 48703491 C G 32 84 BRCA TCGA-BH-A18S ZNF407 SNP Missense_Mutation 18 72346030 T C 59 95 BRCA TCGA-BH-A18S ARRDC5 SNP Silent 19 4891118 A C 7 22 BRCA TCGA-BH-A18S C2orf65 SNP Nonsense_Mutation 2 74803671 T A 54 62 BRCA TCGA-BH-A18S RAF1 SNP Missense_Mutation 3 12650791 T C 50 61 BRCA TCGA-BH-A18S GABRG1 SNP Missense_Mutation 4 46043235 G T 41 96 BRCA TCGA-BH-A18S LAMA2 SNP Missense_Mutation 6 129581882 C T 28 87 BRCA TCGA-BH-A18S SYNE1 SNP Missense_Mutation 6 152477160 G A 46 100 BRCA TCGA-BH-A18S KIAA1586 SNP Missense_Mutation 6 56918226 A G 11 53 BRCA TCGA-BH-A18S MDN1 SNP Silent 6 90410501 A T 7 50 BRCA TCGA-BH-A18S BACH2 SNP Missense_Mutation 6 90660902 T G 54 88 BRCA TCGA-BH-A18S PTK2 SNP Missense_Mutation 8 141900697 C T 20 56 BRCA TCGA-BH-A18S LOC728683 SNP Missense_Mutation 9 68372402 G A 38 41 BRCA TCGA-BH-A18T DVL1 SNP Missense_Mutation 1 1275510 G A 39 79 BRCA TCGA-BH-A18T C1orf61 SNP Splice_site 1 156384545 G C 34 50 BRCA TCGA-BH-A18T MNDA SNP Silent 1 158813903 G A 40 46 BRCA TCGA-BH-A18T HNRNPR SNP Silent 1 23637052 G A 37 69 BRCA TCGA-BH-A18T ACTN2 SNP Silent 1 236924431 C G 23 44 BRCA TCGA-BH-A18T ACTN2 SNP Missense_Mutation 1 236925789 G A 39 100 BRCA TCGA-BH-A18T WDR65 SNP Missense_Mutation 1 43675636 C A 19 45 BRCA TCGA-BH-A18T AKR1CL1 SNP Missense_Mutation 10 5227011 C T 25 50 BRCA TCGA-BH-A18T PCDH15 SNP Missense_Mutation 10 55582115 G T 41 48 BRCA TCGA-BH-A18T ANK3 SNP Missense_Mutation 10 61831032 C A 18 97 BRCA TCGA-BH-A18T SIDT2 SNP Missense_Mutation 11 117062673 C A 27 40 BRCA TCGA-BH-A18T ROBO4 SNP Missense_Mutation 11 124765517 C A 30 72 BRCA TCGA-BH-A18T PDHX SNP Missense_Mutation 11 34981989 C G 23 70 BRCA TCGA-BH-A18T OR5M11 SNP Missense_Mutation 11 56310715 T G 55 60 BRCA TCGA-BH-A18T FADS2 SNP Missense_Mutation 11 61631214 C G 29 80 BRCA TCGA-BH-A18T KSR2 SNP Silent 12 117962668 G A 47 50 BRCA TCGA-BH-A18T PIP4K2C DEL Frame_Shift_Del 12 57988969 C - 30 49 BRCA TCGA-BH-A18T CD4 SNP Missense_Mutation 12 6924071 C G 28 32 BRCA TCGA-BH-A18T CD4 SNP Silent 12 6925370 C T 29 52 BRCA TCGA-BH-A18T CCT2 SNP Missense_Mutation 12 69991764 G C 45 80 BRCA TCGA-BH-A18T CAPS2 SNP Missense_Mutation 12 75715242 C T 25 44 BRCA TCGA-BH-A18T NUPL1 SNP Missense_Mutation 13 25882072 G A 41 84 BRCA TCGA-BH-A18T KATNAL1 SNP Missense_Mutation 13 30854258 G C 45 66 BRCA TCGA-BH-A18T FOXA1 SNP Missense_Mutation 14 38061531 G A 38 68 BRCA TCGA-BH-A18T MAGEL2 SNP Silent 15 23890637 G T 33 55 BRCA TCGA-BH-A18T LIPC SNP Missense_Mutation 15 58830595 G C 33 48 BRCA TCGA-BH-A18T CSPG4 SNP Missense_Mutation 15 75980944 A G 9 90 BRCA TCGA-BH-A18T ADAMTSL3 SNP Silent 15 84611369 G T 42 24 BRCA TCGA-BH-A18T SSTR5 SNP Silent 16 1129033 G C 47 55 BRCA TCGA-BH-A18T UMOD SNP Missense_Mutation 16 20346808 G C 34 54 BRCA TCGA-BH-A18T LYRM1 SNP Silent 16 20931494 G A 41 61 BRCA TCGA-BH-A18T CACNG3 SNP Missense_Mutation 16 24372732 C A 25 81 BRCA TCGA-BH-A18T OR3A2 SNP Missense_Mutation 17 3181599 C A 17 43 BRCA TCGA-BH-A18T STAT5B SNP Missense_Mutation 17 40364190 C G 19 100 BRCA TCGA-BH-A18T ITGA3 SNP Silent 17 48165666 G A 40 42 BRCA TCGA-BH-A18T RPS6KB1 SNP Silent 17 58011559 A G 16 53 BRCA TCGA-BH-A18T TP53 SNP Missense_Mutation 17 7579368 A C 15 64 BRCA TCGA-BH-A18T COLEC12 SNP Missense_Mutation 18 346546 G A 40 85 BRCA TCGA-BH-A18T WDR7 SNP Missense_Mutation 18 54362267 G T 48 63 BRCA TCGA-BH-A18T ZCCHC2 SNP Silent 18 60209735 A T 14 55 BRCA TCGA-BH-A18T IL12RB1 SNP Missense_Mutation 19 18173028 G T 35 64 BRCA TCGA-BH-A18T LILRA1 SNP Missense_Mutation 19 55107251 G A 42 51 BRCA TCGA-BH-A18T TTN SNP Missense_Mutation 2 179416608 C T 26 100 BRCA TCGA-BH-A18T APOB SNP Missense_Mutation 2 21229507 G C 48 50 BRCA TCGA-BH-A18T SPTBN1 SNP Missense_Mutation 2 54858364 G C 35 59 BRCA TCGA-BH-A18T CCDC88A SNP Missense_Mutation 2 55561331 A G 16 68 BRCA TCGA-BH-A18T CEP68 SNP Silent 2 65298635 G C 45 23 BRCA TCGA-BH-A18T RTKN SNP Missense_Mutation 2 74655820 G C 39 71 BRCA TCGA-BH-A18T SNRNP200 SNP Missense_Mutation 2 96943363 C A 18 73 BRCA TCGA-BH-A18T MYH7B SNP Missense_Mutation 20 33586607 C A 26 82 BRCA TCGA-BH-A18T SCAF4 SNP Silent 21 33076192 A G 5 57 BRCA TCGA-BH-A18T GPRASP2 SNP Missense_Mutation 23 101972006 C T 29 57 BRCA TCGA-BH-A18T KLHL13 SNP Missense_Mutation 23 117033283 G A 38 97 BRCA TCGA-BH-A18T ALAS2 SNP Missense_Mutation 23 55052441 C G 24 53 BRCA TCGA-BH-A18T DIRC2 SNP Missense_Mutation 3 122545663 C G 17 94 BRCA TCGA-BH-A18T RPN1 SNP Missense_Mutation 3 128341012 C G 31 97 BRCA TCGA-BH-A18T MECOM SNP Missense_Mutation 3 169099127 G T 43 98 BRCA TCGA-BH-A18T CLASP2 SNP Missense_Mutation 3 33580407 C T 29 100 BRCA TCGA-BH-A18T STAB1 SNP Silent 3 52548172 C T 17 49 BRCA TCGA-BH-A18T CTNND2 SNP Missense_Mutation 5 11022927 C T 23 100 BRCA TCGA-BH-A18T PDE4D SNP Missense_Mutation 5 58273034 T C 64 92 BRCA TCGA-BH-A18T NOX3 SNP Silent 6 155750089 T A 55 27 BRCA TCGA-BH-A18T KIF13A SNP Missense_Mutation 6 17799628 T C 64 78 BRCA TCGA-BH-A18T ENPP4 SNP Missense_Mutation 6 46111325 C A 21 70 BRCA TCGA-BH-A18T LAMB1 SNP Missense_Mutation 7 107580692 C G 22 97 BRCA TCGA-BH-A18T ELMO1 SNP Silent 7 36934509 G A 41 55 BRCA TCGA-BH-A18T WBSCR27 SNP Missense_Mutation 7 73249185 C A 28 53 BRCA TCGA-BH-A18T PTPN12 SNP Missense_Mutation 7 77200466 A C 1 63 BRCA TCGA-BH-A18T NSMCE2 SNP Missense_Mutation 8 126370005 G C 33 82 BRCA TCGA-BH-A18T PRDM12 SNP Missense_Mutation 9 133543691 G C 35 54 BRCA TCGA-BH-A18U SHC1 SNP Missense_Mutation 1 154938529 G C 41 93 BRCA TCGA-BH-A18U TNN SNP Missense_Mutation 1 175096180 G A 39 79 BRCA TCGA-BH-A18U FAM5B SNP Silent 1 177199234 C T 29 57 BRCA TCGA-BH-A18U EPHB2 SNP Silent 1 23111019 C T 19 49 BRCA TCGA-BH-A18U RBM34 SNP Nonsense_Mutation 1 235301419 G A 46 56 BRCA TCGA-BH-A18U MKI67 SNP Missense_Mutation 10 129913245 G C 33 71 BRCA TCGA-BH-A18U SIRT1 SNP Missense_Mutation 10 69672725 G A 47 78 BRCA TCGA-BH-A18U KIF20B SNP Silent 10 91497970 G A 45 48 BRCA TCGA-BH-A18U GRIA4 SNP Missense_Mutation 11 105481745 G C 33 66 BRCA TCGA-BH-A18U MLL SNP Silent 11 118375784 G A 40 45 BRCA TCGA-BH-A18U GAL SNP Splice_Site 11 68458384 G A 33 70 BRCA TCGA-BH-A18U MRE11A SNP Missense_Mutation 11 94192723 C G 32 100 BRCA TCGA-BH-A18U ERP29 SNP Missense_Mutation 12 112457615 G A 44 86 BRCA TCGA-BH-A18U SRRM4 SNP Silent 12 119419693 G A 37 48 BRCA TCGA-BH-A18U DNAH10 SNP Silent 12 124377793 G A 38 38 BRCA TCGA-BH-A18U POLE SNP Silent 12 133220066 G C 34 65 BRCA TCGA-BH-A18U GOLGA3 SNP Nonsense_Mutation 12 133351861 C A 30 86 BRCA TCGA-BH-A18U NR4A1 SNP Silent 12 52448796 G A 39 24 BRCA TCGA-BH-A18U VWF SNP Silent 12 6091108 C T 27 12 BRCA TCGA-BH-A18U CAND1 SNP Missense_Mutation 12 67686481 G A 45 99 BRCA TCGA-BH-A18U ZFC3H1 SNP Silent 12 72013172 A G 9 55 BRCA TCGA-BH-A18U FAM155A SNP Missense_Mutation 13 107822931 G C 34 80 BRCA TCGA-BH-A18U MCF2L SNP Splice_Site 13 113699676 G T 36 72 BRCA TCGA-BH-A18U SACS SNP Silent 13 23905513 G A 33 78 BRCA TCGA-BH-A18U MTUS2 SNP Missense_Mutation 13 29600997 C T 23 86 BRCA TCGA-BH-A18U KIAA0391 SNP Missense_Mutation 14 35742701 G A 45 100 BRCA TCGA-BH-A18U ATG2B SNP Silent 14 96809459 T G 55 55 BRCA TCGA-BH-A18U FAM98B SNP Missense_Mutation 15 38757568 C T 31 69 BRCA TCGA-BH-A18U CES5A SNP Silent 16 55907861 C T 29 58 BRCA TCGA-BH-A18U FAM192A SNP Missense_Mutation 16 57188374 G A 43 88 BRCA TCGA-BH-A18U TMCO7 DEL Frame_Shift_Del 16 68943146 AG - 7 56 BRCA TCGA-BH-A18U ZZEF1 SNP Missense_Mutation 17 3961435 G C 42 95 BRCA TCGA-BH-A18U ZFP3 SNP Nonsense_Mutation 17 4996237 C T 21 53 BRCA TCGA-BH-A18U MED13 SNP Missense_Mutation 17 60040309 C G 30 97 BRCA TCGA-BH-A18U TP53 DEL Frame_Shift_Del 17 7577067 TGCGGAGATTCTCTTCCTC - 63 86 BRCA TCGA-BH-A18U TP53 SNP Missense_Mutation 17 7577082 C T 30 80 BRCA TCGA-BH-A18U WDR7 SNP Silent 18 54350050 C T 28 64 BRCA TCGA-BH-A18U LGALS4 SNP Silent 19 39292707 G A 42 63 BRCA TCGA-BH-A18U CYP2S1 SNP Missense_Mutation 19 41707218 C T 19 88 BRCA TCGA-BH-A18U FCGRT SNP Silent 19 50017360 C T 32 52 BRCA TCGA-BH-A18U TUBB4A SNP Silent 19 6495820 C T 23 45 BRCA TCGA-BH-A18U C3 SNP Silent 19 6718310 G A 38 43 BRCA TCGA-BH-A18U KCNH7 SNP Missense_Mutation 2 163291915 C A 29 84 BRCA TCGA-BH-A18U KBTBD10 SNP Missense_Mutation 2 170366479 C G 32 96 BRCA TCGA-BH-A18U NRP2 SNP Missense_Mutation 2 206608200 G A 38 75 BRCA TCGA-BH-A18U NRBP1 SNP Missense_Mutation 2 27663559 G C 45 83 BRCA TCGA-BH-A18U C2orf71 SNP Silent 2 29296696 T C 52 45 BRCA TCGA-BH-A18U PLCG1 SNP Missense_Mutation 20 39793935 G T 45 50 BRCA TCGA-BH-A18U ZNF217 SNP Missense_Mutation 20 52198134 G A 33 80 BRCA TCGA-BH-A18U DNAJC5 SNP Missense_Mutation 20 62560669 C T 28 71 BRCA TCGA-BH-A18U LCA5L SNP Nonsense_Mutation 21 40795105 G A 46 58 BRCA TCGA-BH-A18U PI4KA SNP Silent 22 21096566 G A 35 65 BRCA TCGA-BH-A18U ASCC2 SNP Silent 22 30197090 T C 60 58 BRCA TCGA-BH-A18U EP300 SNP Silent 22 41489026 G A 47 90 BRCA TCGA-BH-A18U SREBF2 SNP Missense_Mutation 22 42271676 C G 32 87 BRCA TCGA-BH-A18U CERK DEL In_Frame_Del 22 47095261 TGA - 63 67 BRCA TCGA-BH-A18U RGAG1 SNP Missense_Mutation 23 109695584 T C 51 48 BRCA TCGA-BH-A18U FLNA SNP Missense_Mutation 23 153580968 G A 45 99 BRCA TCGA-BH-A18U CLCN5 SNP Silent 23 49853534 C G 24 52 BRCA TCGA-BH-A18U SPANXN5 SNP Missense_Mutation 23 52825543 C G 32 52 BRCA TCGA-BH-A18U TSPYL2 SNP Missense_Mutation 23 53113974 T C 51 69 BRCA TCGA-BH-A18U FOXO4 SNP Missense_Mutation 23 70320750 G A 37 76 BRCA TCGA-BH-A18U ATRX SNP Missense_Mutation 23 76938781 G A 41 81 BRCA TCGA-BH-A18U PCDH11X SNP Silent 23 91134233 G T 45 57 BRCA TCGA-BH-A18U GPR143 SNP Missense_Mutation 23 9714090 T A 58 48 BRCA TCGA-BH-A18U IRAK2 SNP Missense_Mutation 3 10251290 G A 34 50 BRCA TCGA-BH-A18U STAG1 SNP Silent 3 136062775 T C 59 47 BRCA TCGA-BH-A18U STAG1 SNP Missense_Mutation 3 136076644 C G 32 87 BRCA TCGA-BH-A18U EIF4G1 SNP Missense_Mutation 3 184035137 C T 23 80 BRCA TCGA-BH-A18U MON1A SNP Missense_Mutation 3 49947969 G A 41 100 BRCA TCGA-BH-A18U LRTM1 SNP Silent 3 54959016 G A 35 67 BRCA TCGA-BH-A18U PAPSS1 SNP Missense_Mutation 4 108578129 C T 18 100 BRCA TCGA-BH-A18U NR3C2 SNP Silent 4 149075853 G A 39 44 BRCA TCGA-BH-A18U CCDC111 SNP Missense_Mutation 4 185606574 G C 45 73 BRCA TCGA-BH-A18U KDR SNP Silent 4 55973912 G A 40 56 BRCA TCGA-BH-A18U SPARCL1 SNP Missense_Mutation 4 88415533 A G 1 54 BRCA TCGA-BH-A18U CTNNA1 SNP Missense_Mutation 5 138260325 C T 29 86 BRCA TCGA-BH-A18U PCDHB1 SNP Silent 5 140433272 C T 18 54 BRCA TCGA-BH-A18U PCDHB6 SNP Missense_Mutation 5 140530673 G A 38 49 BRCA TCGA-BH-A18U MYO10 SNP Silent 5 16711286 C T 29 57 BRCA TCGA-BH-A18U RAB3C SNP Missense_Mutation 5 58021869 C A 26 100 BRCA TCGA-BH-A18U GJA10 SNP Nonsense_Mutation 6 90604284 C T 23 85 BRCA TCGA-BH-A18U CFTR SNP Missense_Mutation 7 117306992 G T 37 98 BRCA TCGA-BH-A18U SMARCD3 SNP Missense_Mutation 7 150937577 T C 54 87 BRCA TCGA-BH-A18U WBSCR17 SNP Nonsense_Mutation 7 70886058 G A 47 95 BRCA TCGA-BH-A18U ZNF3 SNP Missense_Mutation 7 99662436 C T 20 65 BRCA TCGA-BH-A18U CYP7B1 DEL Frame_Shift_Del 8 65509394 A - 5 60 BRCA TCGA-BH-A18U DAB2IP SNP Missense_Mutation 9 124528856 G A 39 96 BRCA TCGA-BH-A18U CBWD1 SNP Missense_Mutation 9 156515 C G 32 77 BRCA TCGA-BH-A18U BNC2 SNP Missense_Mutation 9 16436220 C T 29 100 BRCA TCGA-BH-A18U CEP78 SNP Missense_Mutation 9 80880403 G A 45 63 BRCA TCGA-BH-A18U DAPK1 SNP Missense_Mutation 9 90322160 T A 64 51 BRCA TCGA-BH-A18V ACAP3 SNP Missense_Mutation 1 1229567 C T 19 56 BRCA TCGA-BH-A18V FLG SNP Missense_Mutation 1 152279371 C T 28 52 BRCA TCGA-BH-A18V UBE2Q1 SNP Silent 1 154524921 G A 37 33 BRCA TCGA-BH-A18V FCER1A SNP Missense_Mutation 1 159273955 A T 14 51 BRCA TCGA-BH-A18V SLAMF6 SNP Missense_Mutation 1 160461134 G C 45 51 BRCA TCGA-BH-A18V GPA33 SNP Silent 1 167038307 G A 45 50 BRCA TCGA-BH-A18V TIPRL SNP Silent 1 168160639 A G 1 66 BRCA TCGA-BH-A18V F5 SNP Silent 1 169509636 A G 7 46 BRCA TCGA-BH-A18V SCCPDH SNP Missense_Mutation 1 246890259 G C 45 97 BRCA TCGA-BH-A18V COL16A1 SNP Silent 1 32131199 G T 34 50 BRCA TCGA-BH-A18V FNDC5 SNP Silent 1 33333876 G A 33 72 BRCA TCGA-BH-A18V CPT2 SNP Missense_Mutation 1 53675880 G C 45 53 BRCA TCGA-BH-A18V GPR153 SNP Missense_Mutation 1 6311508 G C 42 98 BRCA TCGA-BH-A18V CAMTA1 SNP Missense_Mutation 1 7805917 C G 19 41 BRCA TCGA-BH-A18V SSX2IP SNP Silent 1 85130215 G A 45 48 BRCA TCGA-BH-A18V LZTS2 SNP Missense_Mutation 10 102762473 G A 41 93 BRCA TCGA-BH-A18V MCM10 SNP Silent 10 13251286 T A 53 52 BRCA TCGA-BH-A18V ANKRD30A SNP Missense_Mutation 10 37508523 A G 4 45 BRCA TCGA-BH-A18V SGMS1 SNP Silent 10 52103557 C A 30 50 BRCA TCGA-BH-A18V ARID5B DEL Frame_Shift_Del 10 63661995 AAGA - 5 59 BRCA TCGA-BH-A18V STAMBPL1 SNP Missense_Mutation 10 90661472 C A 29 70 BRCA TCGA-BH-A18V CYP2C8 SNP Missense_Mutation 10 96829054 G A 33 54 BRCA TCGA-BH-A18V R3HCC1L SNP Missense_Mutation 10 99994243 G A 46 89 BRCA TCGA-BH-A18V FLI1 SNP Missense_Mutation 11 128638063 G A 41 76 BRCA TCGA-BH-A18V BARX2 SNP Nonsense_Mutation 11 129306882 G T 37 96 BRCA TCGA-BH-A18V KCNA4 SNP Missense_Mutation 11 30034200 T C 54 74 BRCA TCGA-BH-A18V MYBPC3 DEL Frame_Shift_Del 11 47364566 GCCCACCTTTCACAAAGAGCTCCGTGCTACA - 42 52 BRCA TCGA-BH-A18V TRIM49B SNP Silent 11 49059214 G T 43 40 BRCA TCGA-BH-A18V OR56A4 DEL Frame_Shift_Del 11 6023829 GATGGCA - 41 78 BRCA TCGA-BH-A18V CARNS1 SNP Missense_Mutation 11 67191270 G T 44 81 BRCA TCGA-BH-A18V FAM86C1 SNP Silent 11 71507236 C T 26 50 BRCA TCGA-BH-A18V MYO7A SNP Missense_Mutation 11 76895641 G C 33 63 BRCA TCGA-BH-A18V UTP20 SNP Missense_Mutation 12 101757468 G C 39 100 BRCA TCGA-BH-A18V CLEC9A SNP Splice_Site 12 10205227 A T 3 57 BRCA TCGA-BH-A18V EP400NL SNP Missense_Mutation 12 132589226 G A 43 74 BRCA TCGA-BH-A18V STRAP SNP Missense_Mutation 12 16055855 A T 1 50 BRCA TCGA-BH-A18V PLEKHA5 SNP Missense_Mutation 12 19500091 G C 41 72 BRCA TCGA-BH-A18V PDE3A SNP Missense_Mutation 12 20799535 C T 29 81 BRCA TCGA-BH-A18V RECQL SNP Missense_Mutation 12 21624426 G A 41 81 BRCA TCGA-BH-A18V ETNK1 SNP Silent 12 22796922 G A 41 84 BRCA TCGA-BH-A18V CSRNP2 SNP Missense_Mutation 12 51457830 G C 47 82 BRCA TCGA-BH-A18V MYO1A SNP Missense_Mutation 12 57423998 G C 47 57 BRCA TCGA-BH-A18V NALCN SNP Missense_Mutation 13 101748002 A T 8 74 BRCA TCGA-BH-A18V MTUS2 SNP Silent 13 29600959 C G 32 56 BRCA TCGA-BH-A18V FRY SNP Missense_Mutation 13 32729667 G C 45 100 BRCA TCGA-BH-A18V MAB21L1 SNP Missense_Mutation 13 36049917 G C 41 100 BRCA TCGA-BH-A18V MTRF1 SNP Missense_Mutation 13 41834948 C G 32 55 BRCA TCGA-BH-A18V HTR2A SNP Silent 13 47409443 G A 45 70 BRCA TCGA-BH-A18V KLHL1 SNP Missense_Mutation 13 70456605 C T 32 73 BRCA TCGA-BH-A18V GPR180 SNP Silent 13 95273462 C T 25 51 BRCA TCGA-BH-A18V SLC15A1 SNP Missense_Mutation 13 99376256 G C 48 99 BRCA TCGA-BH-A18V NYNRIN SNP Silent 14 24880591 C G 29 57 BRCA TCGA-BH-A18V MIS18BP1 SNP Nonsense_Mutation 14 45716464 G C 45 58 BRCA TCGA-BH-A18V PPP1R36 SNP Missense_Mutation 14 65053580 G C 33 79 BRCA TCGA-BH-A18V TSHR SNP Missense_Mutation 14 81606112 A T 3 79 BRCA TCGA-BH-A18V STON2 SNP Missense_Mutation 14 81862331 C G 29 69 BRCA TCGA-BH-A18V CLMN SNP Nonsense_Mutation 14 95669354 G A 45 48 BRCA TCGA-BH-A18V ARHGAP11A SNP Missense_Mutation 15 32929259 C G 32 58 BRCA TCGA-BH-A18V LTK SNP Missense_Mutation 15 41800394 C A 32 49 BRCA TCGA-BH-A18V FBN1 SNP Missense_Mutation 15 48717990 G T 45 83 BRCA TCGA-BH-A18V FGF7 SNP Nonsense_Mutation 15 49716609 C T 25 95 BRCA TCGA-BH-A18V TRIP4 SNP Missense_Mutation 15 64687614 A G 9 60 BRCA TCGA-BH-A18V NEO1 SNP Missense_Mutation 15 73593721 C T 23 73 BRCA TCGA-BH-A18V ARID3B SNP Missense_Mutation 15 74836815 G A 45 89 BRCA TCGA-BH-A18V ZNF592 SNP Silent 15 85327556 G T 45 50 BRCA TCGA-BH-A18V ALPK3 SNP Missense_Mutation 15 85405916 G T 45 94 BRCA TCGA-BH-A18V MKL2 SNP Missense_Mutation 16 14334339 C G 29 63 BRCA TCGA-BH-A18V KIAA0430 SNP Missense_Mutation 16 15702342 G C 33 57 BRCA TCGA-BH-A18V IL21R SNP Missense_Mutation 16 27448978 G C 41 62 BRCA TCGA-BH-A18V ATP2C2 SNP Missense_Mutation 16 84473108 C T 19 93 BRCA TCGA-BH-A18V COPS3 SNP Missense_Mutation 17 17171253 G T 48 99 BRCA TCGA-BH-A18V PHF12 SNP Missense_Mutation 17 27240940 A G 3 69 BRCA TCGA-BH-A18V GRB7 SNP Missense_Mutation 17 37899236 T A 55 88 BRCA TCGA-BH-A18V IFI35 SNP Silent 17 41165360 C G 24 49 BRCA TCGA-BH-A18V ZNF594 SNP Missense_Mutation 17 5087301 C G 30 45 BRCA TCGA-BH-A18V SCN4A SNP Silent 17 62026013 C T 32 64 BRCA TCGA-BH-A18V ACOX1 SNP Missense_Mutation 17 73949695 G C 42 86 BRCA TCGA-BH-A18V TP53 SNP Nonsense_Mutation 17 7579521 C A 29 54 BRCA TCGA-BH-A18V APLP1 SNP Missense_Mutation 19 36370329 G C 41 91 BRCA TCGA-BH-A18V ACTN4 DEL Frame_Shift_Del 19 39219701 C - 30 79 BRCA TCGA-BH-A18V SAMD4B SNP Silent 19 39847654 C T 24 74 BRCA TCGA-BH-A18V ARHGEF1 SNP Missense_Mutation 19 42410647 G T 33 81 BRCA TCGA-BH-A18V GIPR SNP Missense_Mutation 19 46178065 C G 26 55 BRCA TCGA-BH-A18V HIF3A SNP Missense_Mutation 19 46828875 G T 33 62 BRCA TCGA-BH-A18V SLC9A2 SNP Silent 2 103274408 C G 32 55 BRCA TCGA-BH-A18V TFCP2L1 SNP Missense_Mutation 2 121981961 C G 29 83 BRCA TCGA-BH-A18V CNTNAP5 SNP Silent 2 125204421 G A 34 57 BRCA TCGA-BH-A18V PLA2R1 SNP Missense_Mutation 2 160840563 G C 33 51 BRCA TCGA-BH-A18V XIRP2 SNP Missense_Mutation 2 168100303 G A 48 50 BRCA TCGA-BH-A18V LRP2 SNP Missense_Mutation 2 170027091 A G 7 93 BRCA TCGA-BH-A18V KBTBD10 SNP Missense_Mutation 2 170366886 G C 36 62 BRCA TCGA-BH-A18V METAP1D SNP Missense_Mutation 2 172944897 G C 41 67 BRCA TCGA-BH-A18V DNAH7 SNP Missense_Mutation 2 196740462 G C 33 68 BRCA TCGA-BH-A18V MAP2 SNP Silent 2 210574870 G A 37 41 BRCA TCGA-BH-A18V APOB SNP Missense_Mutation 2 21233256 C A 29 51 BRCA TCGA-BH-A18V ABCA12 SNP Missense_Mutation 2 215815716 C G 21 98 BRCA TCGA-BH-A18V HTR2B SNP Silent 2 231988413 G C 35 51 BRCA TCGA-BH-A18V NEU4 SNP Missense_Mutation 2 242755773 C T 22 94 BRCA TCGA-BH-A18V EML6 SNP Missense_Mutation 2 55093957 G A 38 62 BRCA TCGA-BH-A18V C2orf81 SNP Nonsense_Mutation 2 74643227 C A 31 77 BRCA TCGA-BH-A18V SEL1L2 SNP Missense_Mutation 20 13894543 G T 34 79 BRCA TCGA-BH-A18V CST5 SNP Silent 20 23858232 G A 36 51 BRCA TCGA-BH-A18V NANP SNP Missense_Mutation 20 25597049 C G 25 44 BRCA TCGA-BH-A18V CPXM1 SNP Missense_Mutation 20 2776651 A G 13 65 BRCA TCGA-BH-A18V ZNF840 SNP Missense_Mutation 20 45092758 T G 55 57 BRCA TCGA-BH-A18V SON SNP Missense_Mutation 21 34927217 T C 50 80 BRCA TCGA-BH-A18V ZC3H7B SNP Missense_Mutation 22 41752377 G C 47 100 BRCA TCGA-BH-A18V SCUBE1 SNP Silent 22 43634854 C T 32 61 BRCA TCGA-BH-A18V CT45A5 SNP Silent 23 134947485 A T 15 48 BRCA TCGA-BH-A18V FIGF SNP Missense_Mutation 23 15381257 G C 36 69 BRCA TCGA-BH-A18V PHKA2 SNP Splice_Site 23 18918818 C G 32 79 BRCA TCGA-BH-A18V CDK16 SNP Silent 23 47086816 G T 45 94 BRCA TCGA-BH-A18V USP11 SNP Missense_Mutation 23 47101698 C T 21 93 BRCA TCGA-BH-A18V SSX4 SNP Missense_Mutation 23 48244061 C G 31 48 BRCA TCGA-BH-A18V SSX4B SNP Missense_Mutation 23 48270249 G C 37 51 BRCA TCGA-BH-A18V CCNB3 SNP Missense_Mutation 23 50053928 C A 18 52 BRCA TCGA-BH-A18V ATP2B2 SNP Missense_Mutation 3 10430045 C T 25 100 BRCA TCGA-BH-A18V ALCAM SNP Missense_Mutation 3 105260577 G C 34 55 BRCA TCGA-BH-A18V CBLB SNP Missense_Mutation 3 105397410 C G 32 74 BRCA TCGA-BH-A18V UMPS SNP Missense_Mutation 3 124456915 G C 33 81 BRCA TCGA-BH-A18V MUC13 SNP Missense_Mutation 3 124632415 A C 7 68 BRCA TCGA-BH-A18V DNAJC13 SNP Silent 3 132247140 C G 29 52 BRCA TCGA-BH-A18V MRPS22 SNP Missense_Mutation 3 139074558 C G 29 93 BRCA TCGA-BH-A18V TMEM183B SNP Missense_Mutation 3 149700668 G C 41 82 BRCA TCGA-BH-A18V B3GALNT1 SNP Silent 3 160804030 G T 47 50 BRCA TCGA-BH-A18V LRRC31 SNP Splice_site 3 169565908 C A 22 60 BRCA TCGA-BH-A18V SEC62 SNP Missense_Mutation 3 169684617 G A 41 71 BRCA TCGA-BH-A18V GPR160 SNP Silent 3 169802102 G C 45 46 BRCA TCGA-BH-A18V ECE2 SNP Missense_Mutation 3 184008058 G T 33 93 BRCA TCGA-BH-A18V MB21D2 SNP Missense_Mutation 3 192516720 G C 45 99 BRCA TCGA-BH-A18V KIAA0226 SNP Missense_Mutation 3 197402332 T C 51 70 BRCA TCGA-BH-A18V GRM2 SNP Missense_Mutation 3 51749276 C G 22 100 BRCA TCGA-BH-A18V PARP3 SNP Missense_Mutation 3 51978147 G C 37 75 BRCA TCGA-BH-A18V PPP4R2 SNP Missense_Mutation 3 73114577 C G 22 64 BRCA TCGA-BH-A18V BANK1 SNP Missense_Mutation 4 102946423 G A 45 49 BRCA TCGA-BH-A18V DCHS2 SNP Missense_Mutation 4 155156862 G C 41 63 BRCA TCGA-BH-A18V FGA SNP Missense_Mutation 4 155510695 C A 18 84 BRCA TCGA-BH-A18V NPY2R SNP Missense_Mutation 4 156135095 G C 43 77 BRCA TCGA-BH-A18V UGT2B10 SNP Missense_Mutation 4 69682121 T A 51 48 BRCA TCGA-BH-A18V FRAS1 SNP Silent 4 79188077 G A 45 48 BRCA TCGA-BH-A18V UNC5C SNP Missense_Mutation 4 96222841 C G 21 86 BRCA TCGA-BH-A18V ADAMTS19 SNP Missense_Mutation 5 128797410 C A 24 79 BRCA TCGA-BH-A18V STK10 SNP Missense_Mutation 5 171533651 G A 35 94 BRCA TCGA-BH-A18V NSD1 SNP Silent 5 176721686 G A 45 55 BRCA TCGA-BH-A18V CANX SNP Missense_Mutation 5 179134161 G C 37 100 BRCA TCGA-BH-A18V CDH12 SNP Splice_site 5 21975200 C T 22 96 BRCA TCGA-BH-A18V PRKAA1 SNP Missense_Mutation 5 40767578 T G 63 77 BRCA TCGA-BH-A18V PARP8 SNP Missense_Mutation 5 50128622 C G 17 57 BRCA TCGA-BH-A18V CDC20B SNP Silent 5 54429340 G C 45 50 BRCA TCGA-BH-A18V SKIV2L2 SNP Missense_Mutation 5 54696232 T C 63 88 BRCA TCGA-BH-A18V ADCY2 SNP Silent 5 7820754 C G 29 47 BRCA TCGA-BH-A18V MSH3 SNP Silent 5 80071554 A T 5 68 BRCA TCGA-BH-A18V BRD9 SNP Silent 5 870670 G A 48 36 BRCA TCGA-BH-A18V GRIK2 SNP Missense_Mutation 6 102483412 C G 32 100 BRCA TCGA-BH-A18V KIAA0408 DEL Frame_Shift_Del 6 127775010 CATAATCTTC - 25 95 BRCA TCGA-BH-A18V SYNJ2 SNP Splice_Site 6 158484821 A G 3 84 BRCA TCGA-BH-A18V HIST1H2BH SNP Silent 6 26251947 G A 33 58 BRCA TCGA-BH-A18V HLA-E DEL In_Frame_Del 6 30459143 CCATGTGCA - 26 60 BRCA TCGA-BH-A18V TNXB SNP Missense_Mutation 6 32023670 C T 31 50 BRCA TCGA-BH-A18V GCLC SNP Missense_Mutation 6 53372344 C G 21 100 BRCA TCGA-BH-A18V BMP5 SNP Missense_Mutation 6 55739309 A G 11 70 BRCA TCGA-BH-A18V GRM8 SNP Nonsense_Mutation 7 126173298 C T 21 99 BRCA TCGA-BH-A18V IMPDH1 SNP Missense_Mutation 7 128038635 G C 34 61 BRCA TCGA-BH-A18V STRA8 DEL Frame_Shift_Del 7 134927510 GCATTGTCTCTGTCTATCCTCAGTGGCAG - 34 62 BRCA TCGA-BH-A18V AEBP1 SNP Silent 7 44153560 C G 21 40 BRCA TCGA-BH-A18V PHTF2 DEL In_Frame_Del 7 77558499 CAGAATCTGAAA - 21 73 BRCA TCGA-BH-A18V AKAP9 SNP Missense_Mutation 7 91718833 A C 2 52 BRCA TCGA-BH-A18V DLX5 SNP Missense_Mutation 7 96650328 T G 64 91 BRCA TCGA-BH-A18V DLX5 SNP Silent 7 96651583 A G 4 66 BRCA TCGA-BH-A18V VPS13B SNP Missense_Mutation 8 100830977 C G 32 88 BRCA TCGA-BH-A18V BLK SNP Silent 8 11400826 A G 3 50 BRCA TCGA-BH-A18V NDUFB9 SNP Missense_Mutation 8 125551447 G T 41 36 BRCA TCGA-BH-A18V BAI1 SNP Missense_Mutation 8 143618431 C A 19 41 BRCA TCGA-BH-A18V STMN4 SNP Nonsense_Mutation 8 27099197 G A 45 54 BRCA TCGA-BH-A18V C8orf44 SNP Missense_Mutation 8 67589946 G A 45 49 BRCA TCGA-BH-A18V LPPR1 SNP Missense_Mutation 9 104032342 A C 2 70 BRCA TCGA-BH-A18V OR13C4 SNP Missense_Mutation 9 107288610 A T 16 83 BRCA TCGA-BH-A18V TMEM245 SNP Missense_Mutation 9 111853251 C G 32 75 BRCA TCGA-BH-A18V RGS3 SNP Nonsense_Mutation 9 116241773 C T 29 71 BRCA TCGA-BH-A18V RPL35 SNP Missense_Mutation 9 127620332 C G 28 78 BRCA TCGA-BH-A18V SURF6 SNP Missense_Mutation 9 136200568 C G 30 63 BRCA TCGA-BH-A18V WDR5 SNP Splice_Site 9 137007069 A T 3 84 BRCA TCGA-BH-A18V NOTCH1 SNP Missense_Mutation 9 139390731 T A 55 90 BRCA TCGA-BH-A18V ENTPD2 SNP Missense_Mutation 9 139946068 G C 47 58 BRCA TCGA-BH-A18V LINGO2 SNP Missense_Mutation 9 27950483 C G 30 100 BRCA TCGA-BH-A18V VPS13A SNP Missense_Mutation 9 79954717 G C 47 68 BRCA TCGA-BH-A18V C9orf3 SNP Missense_Mutation 9 97522822 G A 45 52 BRCA TCGA-BH-A1EN CHIA SNP Missense_Mutation 1 111857167 G A 34 51 BRCA TCGA-BH-A1EN MIA3 SNP Splice_Site 1 222828136 G C 36 92 BRCA TCGA-BH-A1EN ZP4 SNP Missense_Mutation 1 238049097 G C 44 59 BRCA TCGA-BH-A1EN ZNF669 SNP Missense_Mutation 1 247265394 C T 17 57 BRCA TCGA-BH-A1EN EXPH5 SNP Missense_Mutation 11 108380596 T C 49 61 BRCA TCGA-BH-A1EN OR4X1 SNP Missense_Mutation 11 48286100 G A 43 71 BRCA TCGA-BH-A1EN TRIM49B SNP Missense_Mutation 11 49059150 G T 36 44 BRCA TCGA-BH-A1EN GRIN2B SNP Silent 12 13716419 C G 17 56 BRCA TCGA-BH-A1EN KIF5A SNP Missense_Mutation 12 57966441 G T 44 79 BRCA TCGA-BH-A1EN YEATS4 SNP Missense_Mutation 12 69764730 A C 15 51 BRCA TCGA-BH-A1EN MYO16 SNP Missense_Mutation 13 109779790 C T 19 58 BRCA TCGA-BH-A1EN TRMT5 SNP Missense_Mutation 14 61446282 A G 12 56 BRCA TCGA-BH-A1EN EML5 SNP Missense_Mutation 14 89205341 C T 29 96 BRCA TCGA-BH-A1EN MYO5A SNP Missense_Mutation 15 52667640 C T 27 75 BRCA TCGA-BH-A1EN RORA SNP Missense_Mutation 15 60789700 T G 54 94 BRCA TCGA-BH-A1EN SMG1 SNP Missense_Mutation 16 18851175 C A 20 98 BRCA TCGA-BH-A1EN CCDC79 SNP Missense_Mutation 16 66819778 G A 47 62 BRCA TCGA-BH-A1EN MYH8 SNP Missense_Mutation 17 10312698 T C 63 91 BRCA TCGA-BH-A1EN FAM57A SNP Missense_Mutation 17 644619 C T 32 57 BRCA TCGA-BH-A1EN TYK2 SNP Missense_Mutation 19 10468760 G A 39 56 BRCA TCGA-BH-A1EN STK11 INS Frame_Shift_Ins 19 1207090 - A 61 85 BRCA TCGA-BH-A1EN SLC5A7 SNP Missense_Mutation 2 108614411 T A 58 91 BRCA TCGA-BH-A1EN MBD5 SNP Silent 2 149227717 C T 18 81 BRCA TCGA-BH-A1EN RAPH1 SNP Missense_Mutation 2 204309665 G A 39 100 BRCA TCGA-BH-A1EN NRXN1 SNP Missense_Mutation 2 50464096 T C 49 93 BRCA TCGA-BH-A1EN REG3G SNP Silent 2 79253873 G T 41 40 BRCA TCGA-BH-A1EN CPSF3 SNP Missense_Mutation 2 9597078 A C 15 55 BRCA TCGA-BH-A1EN BTBD3 SNP Silent 20 11904104 A G 16 58 BRCA TCGA-BH-A1EN SEL1L2 SNP Missense_Mutation 20 13894469 A C 16 74 BRCA TCGA-BH-A1EN TSHZ2 SNP Silent 20 51871632 C T 19 55 BRCA TCGA-BH-A1EN TBX1 SNP Missense_Mutation 22 19770438 C A 28 49 BRCA TCGA-BH-A1EN TPST2 SNP Silent 22 26936814 G A 38 55 BRCA TCGA-BH-A1EN HAUS7 SNP Silent 23 152728092 C T 27 49 BRCA TCGA-BH-A1EN PLXNB3 SNP Missense_Mutation 23 153032507 C G 30 67 BRCA TCGA-BH-A1EN AVPR2 SNP Missense_Mutation 23 153172076 G A 37 62 BRCA TCGA-BH-A1EN MAP3K15 SNP Missense_Mutation 23 19378922 G A 38 63 BRCA TCGA-BH-A1EN PRDX4 SNP Silent 23 23697375 A G 16 35 BRCA TCGA-BH-A1EN SYTL4 SNP Silent 23 99956630 C T 22 52 BRCA TCGA-BH-A1EN SNRK SNP Missense_Mutation 3 43389849 G C 46 52 BRCA TCGA-BH-A1EN FAM208A SNP Missense_Mutation 3 56667431 T G 63 64 BRCA TCGA-BH-A1EN ABCE1 SNP Missense_Mutation 4 146044454 C G 18 100 BRCA TCGA-BH-A1EN CD38 SNP Missense_Mutation 4 15842113 C T 31 40 BRCA TCGA-BH-A1EN NOA1 SNP Missense_Mutation 4 57842776 C T 32 76 BRCA TCGA-BH-A1EN FBXL7 SNP Missense_Mutation 5 15936967 C T 27 100 BRCA TCGA-BH-A1EN PARP8 SNP Missense_Mutation 5 50046013 G C 33 82 BRCA TCGA-BH-A1EN RGMB SNP Silent 5 98129434 T C 56 61 BRCA TCGA-BH-A1EN TNXB SNP Silent 6 32021331 C T 21 48 BRCA TCGA-BH-A1EN WDR46 SNP Missense_Mutation 6 33247311 A G 6 73 BRCA TCGA-BH-A1EN MLL5 SNP Missense_Mutation 7 104752417 C T 29 60 BRCA TCGA-BH-A1EN FBXL18 SNP Missense_Mutation 7 5541277 C T 27 81 BRCA TCGA-BH-A1EN MATN2 SNP Splice_site 8 98954005 C T 27 49 BRCA TCGA-BH-A1EN ORM2 SNP Silent 9 117092260 C T 24 28 BRCA TCGA-BH-A1EN LINGO2 SNP Missense_Mutation 9 27949804 T G 62 81 BRCA TCGA-BH-A1EO CD1D SNP Nonsense_Mutation 1 158152850 C T 23 63 BRCA TCGA-BH-A1EO AKT3 SNP Nonsense_Mutation 1 243828162 G A 40 71 BRCA TCGA-BH-A1EO ARID1A SNP Nonsense_Mutation 1 27057934 C T 21 83 BRCA TCGA-BH-A1EO OR51Q1 SNP Missense_Mutation 11 5443900 C T 27 59 BRCA TCGA-BH-A1EO OR10Q1 SNP Missense_Mutation 11 57995755 C T 27 43 BRCA TCGA-BH-A1EO POLR3B SNP Missense_Mutation 12 106850925 G A 40 100 BRCA TCGA-BH-A1EO NFE2 SNP Missense_Mutation 12 54686775 G A 38 56 BRCA TCGA-BH-A1EO NAV3 SNP Missense_Mutation 12 78225321 C G 21 93 BRCA TCGA-BH-A1EO ARHGEF7 SNP Missense_Mutation 13 111927898 G A 39 100 BRCA TCGA-BH-A1EO PNMA1 SNP Missense_Mutation 14 74179741 C T 23 72 BRCA TCGA-BH-A1EO DET1 SNP Nonsense_Mutation 15 89074906 G A 37 72 BRCA TCGA-BH-A1EO FANCA SNP Missense_Mutation 16 89818569 C T 29 50 BRCA TCGA-BH-A1EO PLEKHM1 SNP Missense_Mutation 17 43531287 G A 35 54 BRCA TCGA-BH-A1EO CDH7 SNP Missense_Mutation 18 63547856 G A 37 94 BRCA TCGA-BH-A1EO TYK2 SNP Missense_Mutation 19 10475348 C T 31 70 BRCA TCGA-BH-A1EO AP2A1 SNP Missense_Mutation 19 50302640 G C 39 94 BRCA TCGA-BH-A1EO ZNF577 SNP Splice_site 19 52381767 C A 22 38 BRCA TCGA-BH-A1EO TTI1 SNP Missense_Mutation 20 36641436 T A 60 52 BRCA TCGA-BH-A1EO ZNF831 SNP Nonsense_Mutation 20 57782030 C T 27 65 BRCA TCGA-BH-A1EO ADAMTS5 SNP Splice_Site 21 28306783 A T 14 87 BRCA TCGA-BH-A1EO KRTAP10-9 SNP Silent 21 46047184 C T 27 46 BRCA TCGA-BH-A1EO DIP2A SNP Silent 21 47974150 G A 45 70 BRCA TCGA-BH-A1EO TEX13A SNP Missense_Mutation 23 104464131 G A 35 50 BRCA TCGA-BH-A1EO ODZ1 SNP Silent 23 123554340 G A 38 14 BRCA TCGA-BH-A1EO COL6A6 SNP Missense_Mutation 3 130285633 C T 19 49 BRCA TCGA-BH-A1EO ITPR1 SNP Missense_Mutation 3 4854831 G T 39 51 BRCA TCGA-BH-A1EO ASB5 DEL Frame_Shift_Del 4 177138077 G - 36 69 BRCA TCGA-BH-A1EO TRMT44 SNP Nonsense_Mutation 4 8469962 C T 19 59 BRCA TCGA-BH-A1EO SLC6A7 SNP Missense_Mutation 5 149588999 G A 41 68 BRCA TCGA-BH-A1EO TSPAN17 SNP Splice_Site 5 176078754 G A 35 94 BRCA TCGA-BH-A1EO RUFY1 INS Frame_Shift_Ins 5 178994480 - CGAG 26 54 BRCA TCGA-BH-A1EO UTP15 SNP Missense_Mutation 5 72866470 G A 40 80 BRCA TCGA-BH-A1EO FLNC SNP Missense_Mutation 7 128494721 G T 48 98 BRCA TCGA-BH-A1EO CDK5 SNP Splice_site 7 150752460 C A 18 90 BRCA TCGA-BH-A1EO DMRTA1 SNP Missense_Mutation 9 22451851 A T 7 61 BRCA TCGA-BH-A1ES IGSF3 SNP Nonsense_Mutation 1 117127361 G T 42 69 BRCA TCGA-BH-A1ES PRAMEF7 SNP Missense_Mutation 1 12980075 G T 46 45 BRCA TCGA-BH-A1ES VDAC2 SNP Missense_Mutation 10 76979101 T A 54 77 BRCA TCGA-BH-A1ES RAB35 SNP Silent 12 120536642 G A 38 51 BRCA TCGA-BH-A1ES TM9SF2 SNP Missense_Mutation 13 100190011 G C 33 62 BRCA TCGA-BH-A1ES ZC3H13 SNP Missense_Mutation 13 46616352 C A 19 75 BRCA TCGA-BH-A1ES PLA2G4E SNP Missense_Mutation 15 42292345 G T 41 75 BRCA TCGA-BH-A1ES IQCH SNP Missense_Mutation 15 67664804 C T 31 39 BRCA TCGA-BH-A1ES C17orf49 SNP Silent 17 6920583 G A 45 65 BRCA TCGA-BH-A1ES MAST1 SNP Nonsense_Mutation 19 12976829 C T 31 52 BRCA TCGA-BH-A1ES TTN SNP Missense_Mutation 2 179419673 G A 37 77 BRCA TCGA-BH-A1ES CRNKL1 SNP Missense_Mutation 20 20023120 C T 27 100 BRCA TCGA-BH-A1ES CDS1 SNP Missense_Mutation 4 85530598 A G 12 66 BRCA TCGA-BH-A1ES MLL3 SNP Missense_Mutation 7 151859912 C T 22 97 BRCA TCGA-BH-A1ES FDFT1 SNP Missense_Mutation 8 11679310 G A 37 97 BRCA TCGA-BH-A1ES GPR144 SNP Missense_Mutation 9 127230042 G T 48 74 BRCA TCGA-BH-A1ES MAPKAP1 SNP Missense_Mutation 9 128347966 T C 57 91 BRCA TCGA-BH-A1ET ITLN1 SNP Missense_Mutation 1 160850420 C T 31 58 BRCA TCGA-BH-A1ET ACTA1 SNP Missense_Mutation 1 229567787 G T 40 55 BRCA TCGA-BH-A1ET MTPAP SNP Nonsense_Mutation 10 30602780 G A 39 55 BRCA TCGA-BH-A1ET ELMOD1 SNP Missense_Mutation 11 107518302 G C 43 96 BRCA TCGA-BH-A1ET KDM2A SNP Splice_Site 11 67010479 G T 33 99 BRCA TCGA-BH-A1ET UCP3 SNP Silent 11 73717218 C T 23 24 BRCA TCGA-BH-A1ET HECTD4 SNP Missense_Mutation 12 112687979 G A 38 80 BRCA TCGA-BH-A1ET INHBE SNP Missense_Mutation 12 57849486 A C 6 63 BRCA TCGA-BH-A1ET DUSP6 SNP Silent 12 89744753 A G 12 57 BRCA TCGA-BH-A1ET MYH2 SNP Missense_Mutation 17 10436640 G T 33 64 BRCA TCGA-BH-A1ET PIEZO2 SNP Missense_Mutation 18 10855367 T C 63 57 BRCA TCGA-BH-A1ET HIF3A SNP Silent 19 46815779 G A 35 94 BRCA TCGA-BH-A1ET TTLL8 DEL In_Frame_Del 22 50471725 GGAACCACT - 35 93 BRCA TCGA-BH-A1ET SOX14 SNP Missense_Mutation 3 137483952 G A 42 98 BRCA TCGA-BH-A1ET PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-BH-A1ET LRIG1 SNP Silent 3 66431242 C T 21 53 BRCA TCGA-BH-A1ET FAM160A1 SNP Missense_Mutation 4 152571037 A C 1 53 BRCA TCGA-BH-A1ET PCDHB6 SNP Missense_Mutation 5 140532071 C A 21 60 BRCA TCGA-BH-A1ET NEDD9 SNP Missense_Mutation 6 11191135 C T 19 55 BRCA TCGA-BH-A1ET GPR63 SNP Missense_Mutation 6 97247418 T C 57 69 BRCA TCGA-BH-A1ET SDK1 SNP Splice_Site 7 4308309 G A 36 55 BRCA TCGA-BH-A1ET SLC35G5 SNP Silent 8 11188822 G A 38 51 BRCA TCGA-BH-A1ET FER1L6 SNP Splice_Site 8 125047696 G A 44 93 BRCA TCGA-BH-A1ET FER1L6 SNP Silent 8 125076805 A G 9 43 BRCA TCGA-BH-A1ET PRKDC SNP Missense_Mutation 8 48743255 C T 19 56 BRCA TCGA-BH-A1EU FLG SNP Silent 1 152276139 C T 24 51 BRCA TCGA-BH-A1EU GRIK4 SNP Silent 11 120833362 C T 21 100 BRCA TCGA-BH-A1EU TYR SNP Missense_Mutation 11 89018003 C T 25 93 BRCA TCGA-BH-A1EU PABPC3 SNP Missense_Mutation 13 25670833 G A 38 66 BRCA TCGA-BH-A1EU DPEP1 SNP Missense_Mutation 16 89696849 G T 48 50 BRCA TCGA-BH-A1EU ZNF653 SNP Silent 19 11598576 G A 38 49 BRCA TCGA-BH-A1EU CAD SNP Missense_Mutation 2 27460602 C A 26 78 BRCA TCGA-BH-A1EU PDE9A SNP Missense_Mutation 21 44182234 A G 4 91 BRCA TCGA-BH-A1EU GAS2L1 SNP Silent 22 29706530 T C 63 49 BRCA TCGA-BH-A1EU KPNA4 SNP Silent 3 160283041 T C 60 56 BRCA TCGA-BH-A1EU PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA TCGA-BH-A1EU CCR3 DEL Frame_Shift_Del 3 46307328 C - 28 62 BRCA TCGA-BH-A1EU TLR9 SNP Missense_Mutation 3 52257592 C T 19 51 BRCA TCGA-BH-A1EU FLNB DEL In_Frame_Del 3 58097580 GGC - 35 58 BRCA TCGA-BH-A1EU PPP3CA SNP Missense_Mutation 4 102117231 A G 6 91 BRCA TCGA-BH-A1EU KIAA1109 SNP Missense_Mutation 4 123156157 G A 33 84 BRCA TCGA-BH-A1EU MFSD8 SNP Missense_Mutation 4 128854182 A G 2 73 BRCA TCGA-BH-A1EU ENSG00000183199 INS In_Frame_Ins 4 88813271 - ATT 8 80 BRCA TCGA-BH-A1EU AGGF1 SNP Missense_Mutation 5 76358903 T G 51 58 BRCA TCGA-BH-A1EU AP4M1 SNP Missense_Mutation 7 99700554 C G 32 78 BRCA TCGA-BH-A1EU PNMA2 SNP Missense_Mutation 8 26365461 G A 40 62 BRCA TCGA-BH-A1EU ADHFE1 SNP Missense_Mutation 8 67356944 C T 19 78 BRCA TCGA-BH-A1EU MUSK SNP Missense_Mutation 9 113563026 G A 40 99 BRCA TCGA-BH-A1EV KIF1B SNP Missense_Mutation 1 10421003 G C 45 100 BRCA TCGA-BH-A1EV PGD SNP Missense_Mutation 1 10477061 C T 31 71 BRCA TCGA-BH-A1EV SPTA1 SNP Missense_Mutation 1 158648273 C T 25 45 BRCA TCGA-BH-A1EV SYT14 SNP Missense_Mutation 1 210334230 C G 32 100 BRCA TCGA-BH-A1EV C1orf65 SNP Missense_Mutation 1 223567997 A C 7 49 BRCA TCGA-BH-A1EV ZNF695 SNP Missense_Mutation 1 247150728 C G 32 44 BRCA TCGA-BH-A1EV PTPRF SNP Missense_Mutation 1 44035447 C T 29 99 BRCA TCGA-BH-A1EV LRRIQ3 SNP Missense_Mutation 1 74492640 A G 16 47 BRCA TCGA-BH-A1EV C10orf2 SNP Missense_Mutation 10 102749027 C T 31 66 BRCA TCGA-BH-A1EV TACC2 SNP Missense_Mutation 10 123842793 A G 6 41 BRCA TCGA-BH-A1EV OLAH SNP Missense_Mutation 10 15107599 G A 38 32 BRCA TCGA-BH-A1EV ANK3 SNP Missense_Mutation 10 61829925 C G 32 87 BRCA TCGA-BH-A1EV GRID1 SNP Missense_Mutation 10 88123815 C G 18 74 BRCA TCGA-BH-A1EV CUL5 SNP Missense_Mutation 11 107975024 G C 45 79 BRCA TCGA-BH-A1EV MUC2 SNP Missense_Mutation 11 1093600 G A 39 61 BRCA TCGA-BH-A1EV SRPR SNP Missense_Mutation 11 126136424 T C 57 42 BRCA TCGA-BH-A1EV SLC39A13 SNP Missense_Mutation 11 47436635 C G 22 100 BRCA TCGA-BH-A1EV SHANK2 SNP Missense_Mutation 11 70331543 G T 43 72 BRCA TCGA-BH-A1EV FAT3 SNP Missense_Mutation 11 92533525 G C 41 100 BRCA TCGA-BH-A1EV MAML2 SNP Missense_Mutation 11 96074861 C T 32 89 BRCA TCGA-BH-A1EV ARGLU1 SNP Silent 13 107220001 C T 29 60 BRCA TCGA-BH-A1EV PACS2 SNP Missense_Mutation 14 105834442 C A 32 58 BRCA TCGA-BH-A1EV AKAP6 SNP Missense_Mutation 14 33015522 G A 45 85 BRCA TCGA-BH-A1EV UNC79 SNP Silent 14 93943917 G A 37 49 BRCA TCGA-BH-A1EV IGDCC4 SNP Silent 15 65694819 G A 37 62 BRCA TCGA-BH-A1EV CSPG4 SNP Silent 15 75968731 C T 29 54 BRCA TCGA-BH-A1EV BNC1 SNP Missense_Mutation 15 83932427 C T 31 68 BRCA TCGA-BH-A1EV AGBL1 SNP Missense_Mutation 15 86806012 G A 45 66 BRCA TCGA-BH-A1EV C15orf32 SNP Missense_Mutation 15 93016207 A G 16 53 BRCA TCGA-BH-A1EV SFRS2 SNP Missense_Mutation 17 74732502 G C 41 84 BRCA TCGA-BH-A1EV TP53 SNP Missense_Mutation 17 7578204 A C 6 48 BRCA TCGA-BH-A1EV PIGN SNP Silent 18 59828374 C A 19 48 BRCA TCGA-BH-A1EV PTPRM SNP Silent 18 8296428 G A 33 72 BRCA TCGA-BH-A1EV CYP2A13 SNP Missense_Mutation 19 41601717 C G 32 57 BRCA TCGA-BH-A1EV CXCL17 SNP Missense_Mutation 19 42946982 C T 29 58 BRCA TCGA-BH-A1EV PSG1 SNP Missense_Mutation 19 43382380 C G 29 60 BRCA TCGA-BH-A1EV FAM83E SNP Missense_Mutation 19 49113164 C A 30 82 BRCA TCGA-BH-A1EV PPP6R1 SNP Missense_Mutation 19 55750982 C T 29 74 BRCA TCGA-BH-A1EV PDCL3 SNP Missense_Mutation 2 101188161 G C 45 99 BRCA TCGA-BH-A1EV HOXD8 SNP Missense_Mutation 2 176995644 C G 29 94 BRCA TCGA-BH-A1EV FSIP2 SNP Missense_Mutation 2 186672616 C G 30 74 BRCA TCGA-BH-A1EV DOCK10 SNP Missense_Mutation 2 225729686 G A 33 87 BRCA TCGA-BH-A1EV FARP2 SNP Missense_Mutation 2 242373613 G C 33 100 BRCA TCGA-BH-A1EV IFT172 SNP Silent 2 27707103 G A 45 56 BRCA TCGA-BH-A1EV WDR43 SNP Missense_Mutation 2 29135533 G A 37 75 BRCA TCGA-BH-A1EV MSH6 SNP Missense_Mutation 2 48032158 T A 49 90 BRCA TCGA-BH-A1EV ADAM17 SNP Silent 2 9633946 A G 6 59 BRCA TCGA-BH-A1EV FASTKD5 SNP Missense_Mutation 20 3128515 G A 37 97 BRCA TCGA-BH-A1EV ZFP64 SNP Silent 20 50701660 T C 52 61 BRCA TCGA-BH-A1EV RUNX1 DEL Frame_Shift_Del 21 36252990 A - 9 49 BRCA TCGA-BH-A1EV TRMT2B SNP Missense_Mutation 23 100274321 C A 32 50 BRCA TCGA-BH-A1EV GPR112 SNP Missense_Mutation 23 135405374 G A 37 60 BRCA TCGA-BH-A1EV GPR101 SNP Missense_Mutation 23 136112852 C T 29 52 BRCA TCGA-BH-A1EV BRCC3 SNP Missense_Mutation 23 154305450 T A 51 47 BRCA TCGA-BH-A1EV PPEF1 SNP Missense_Mutation 23 18767947 G A 45 50 BRCA TCGA-BH-A1EV MAP3K15 SNP Silent 23 19390837 G A 41 53 BRCA TCGA-BH-A1EV FAM47C SNP Missense_Mutation 23 37029349 C A 18 54 BRCA TCGA-BH-A1EV C3orf24 SNP Missense_Mutation 3 10146177 G C 41 54 BRCA TCGA-BH-A1EV EPHB1 SNP Silent 3 134920324 C T 19 36 BRCA TCGA-BH-A1EV PTX3 SNP Missense_Mutation 3 157160269 C T 17 97 BRCA TCGA-BH-A1EV LMLN SNP Silent 3 197751548 C T 27 49 BRCA TCGA-BH-A1EV NGLY1 SNP Silent 3 25761536 T G 50 43 BRCA TCGA-BH-A1EV ARPP21 SNP Nonsense_Mutation 3 35785363 C A 18 77 BRCA TCGA-BH-A1EV PLXNB1 SNP Missense_Mutation 3 48455429 C G 24 99 BRCA TCGA-BH-A1EV LRTM1 SNP Missense_Mutation 3 54952782 C T 23 50 BRCA TCGA-BH-A1EV ROBO2 SNP Missense_Mutation 3 77607107 G C 33 88 BRCA TCGA-BH-A1EV COL8A1 SNP Missense_Mutation 3 99514307 C T 23 54 BRCA TCGA-BH-A1EV LRBA DEL Frame_Shift_Del 4 151829582 G - 46 78 BRCA TCGA-BH-A1EV ENPP6 SNP Missense_Mutation 4 185045320 G A 41 63 BRCA TCGA-BH-A1EV USP46 SNP Missense_Mutation 4 53492238 C T 29 98 BRCA TCGA-BH-A1EV ARHGAP24 SNP Missense_Mutation 4 86852190 G A 39 86 BRCA TCGA-BH-A1EV ZNF608 SNP Missense_Mutation 5 123976948 G C 45 81 BRCA TCGA-BH-A1EV SLC22A4 SNP Missense_Mutation 5 131657966 C G 20 86 BRCA TCGA-BH-A1EV PCDHA8 SNP Missense_Mutation 5 140222591 C T 27 70 BRCA TCGA-BH-A1EV ATP10B SNP Missense_Mutation 5 160042949 C T 23 42 BRCA TCGA-BH-A1EV RICTOR SNP Missense_Mutation 5 38944651 C T 29 96 BRCA TCGA-BH-A1EV ERAP1 SNP Missense_Mutation 5 96129517 G C 36 88 BRCA TCGA-BH-A1EV ARID1B SNP Missense_Mutation 6 157527466 G C 33 79 BRCA TCGA-BH-A1EV PACRG SNP Silent 6 163483209 C G 29 81 BRCA TCGA-BH-A1EV ZSCAN16 SNP Silent 6 28097614 G A 33 55 BRCA TCGA-BH-A1EV NOTCH4 SNP Missense_Mutation 6 32190509 C A 30 73 BRCA TCGA-BH-A1EV PKHD1 SNP Missense_Mutation 6 51934282 C T 30 83 BRCA TCGA-BH-A1EV OGFRL1 SNP Missense_Mutation 6 72011289 G A 39 87 BRCA TCGA-BH-A1EV SLC35A1 SNP Silent 6 88221166 C G 32 47 BRCA TCGA-BH-A1EV CREB3L2 SNP Missense_Mutation 7 137597730 G A 33 41 BRCA TCGA-BH-A1EV DNAH11 SNP Missense_Mutation 7 21744181 G C 45 100 BRCA TCGA-BH-A1EV AEBP1 SNP Missense_Mutation 7 44147257 C G 20 56 BRCA TCGA-BH-A1EV PKHD1L1 SNP Silent 8 110418568 C T 30 58 BRCA TCGA-BH-A1EV ENTPD4 SNP Missense_Mutation 8 23291938 G A 37 84 BRCA TCGA-BH-A1EV TEX15 SNP Missense_Mutation 8 30695443 T C 60 49 BRCA TCGA-BH-A1EV ERI1 SNP Silent 8 8869082 G C 45 51 BRCA TCGA-BH-A1EV CAMSAP1 SNP Missense_Mutation 9 138774817 G A 39 87 BRCA TCGA-BH-A1EV LRRC19 SNP Missense_Mutation 9 26996420 C T 29 80 BRCA TCGA-BH-A1EV LINGO2 SNP Missense_Mutation 9 27948861 C T 29 100 BRCA TCGA-BH-A1EV C9orf3 SNP Silent 9 97563249 C T 31 42 BRCA TCGA-BH-A1EW FBXO44 SNP Missense_Mutation 1 11718651 G A 41 85 BRCA TCGA-BH-A1EW ENO1 SNP Missense_Mutation 1 8928049 T G 64 91 BRCA TCGA-BH-A1EW H2AFY2 SNP Missense_Mutation 10 71849864 C A 26 82 BRCA TCGA-BH-A1EW CDHR1 SNP Missense_Mutation 10 85965678 G A 48 60 BRCA TCGA-BH-A1EW GUCY2C SNP Missense_Mutation 12 14835986 C T 30 72 BRCA TCGA-BH-A1EW GTSF1 SNP Missense_Mutation 12 54857054 C T 26 74 BRCA TCGA-BH-A1EW OSBPL8 SNP Splice_Site 12 76765227 C T 20 100 BRCA TCGA-BH-A1EW LOC728498 SNP Silent 15 30905821 C T 27 64 BRCA TCGA-BH-A1EW SEPT9 SNP Silent 17 75471846 C T 19 27 BRCA TCGA-BH-A1EW FASN SNP Silent 17 80042925 G A 38 40 BRCA TCGA-BH-A1EW AP1M2 SNP Missense_Mutation 19 10690471 C A 27 95 BRCA TCGA-BH-A1EW THOP1 SNP Missense_Mutation 19 2811608 C T 24 82 BRCA TCGA-BH-A1EW PEG3 SNP Missense_Mutation 19 57334192 C A 21 58 BRCA TCGA-BH-A1EW TEX13A SNP Silent 23 104464674 G A 37 49 BRCA TCGA-BH-A1EW PGRMC1 SNP Missense_Mutation 23 118377191 G A 33 91 BRCA TCGA-BH-A1EW CNGA2 SNP Missense_Mutation 23 150911669 G A 45 81 BRCA TCGA-BH-A1EW NACAD SNP Missense_Mutation 7 45124668 T C 59 80 BRCA TCGA-BH-A1EX DNM3 SNP Missense_Mutation 1 172357865 C G 24 66 BRCA TCGA-BH-A1EX HBB SNP Missense_Mutation 11 5248212 C A 25 48 BRCA TCGA-BH-A1EX SLC43A3 SNP Silent 11 57176738 C G 26 48 BRCA TCGA-BH-A1EX KIAA1467 SNP Missense_Mutation 12 13215838 G T 36 85 BRCA TCGA-BH-A1EX ARID2 SNP Silent 12 46242691 G A 37 54 BRCA TCGA-BH-A1EX TMBIM4 INS Frame_Shift_Ins 12 66539735 - T 36 79 BRCA TCGA-BH-A1EX ABHD13 SNP Missense_Mutation 13 108881865 A G 4 89 BRCA TCGA-BH-A1EX MYCBP2 SNP Silent 13 77786170 A G 3 50 BRCA TCGA-BH-A1EX ACTN1 SNP Missense_Mutation 14 69346794 G A 44 100 BRCA TCGA-BH-A1EX SERPINA1 SNP Missense_Mutation 14 94845836 C T 23 75 BRCA TCGA-BH-A1EX CGNL1 SNP Silent 15 57731718 G A 33 60 BRCA TCGA-BH-A1EX CRAMP1L SNP Missense_Mutation 16 1718050 A T 7 55 BRCA TCGA-BH-A1EX TFAP4 SNP Missense_Mutation 16 4311920 G A 38 63 BRCA TCGA-BH-A1EX CNTNAP4 SNP Missense_Mutation 16 76587194 G T 41 97 BRCA TCGA-BH-A1EX EPB41L3 SNP Missense_Mutation 18 5395094 G A 40 87 BRCA TCGA-BH-A1EX ZNF587 SNP Missense_Mutation 19 58370315 G T 40 37 BRCA TCGA-BH-A1EX TRIP10 SNP Missense_Mutation 19 6750590 G A 37 73 BRCA TCGA-BH-A1EX FAM168B SNP Missense_Mutation 2 131810522 C T 23 95 BRCA TCGA-BH-A1EX THUMPD2 SNP Missense_Mutation 2 39995627 T C 61 51 BRCA TCGA-BH-A1EX ASPHD2 SNP Missense_Mutation 22 26829801 T C 57 85 BRCA TCGA-BH-A1EX COL4A5 SNP Silent 23 107923956 T G 58 47 BRCA TCGA-BH-A1EX VCX3B SNP Silent 23 8434247 C T 27 29 BRCA TCGA-BH-A1EX ARHGAP31 SNP Missense_Mutation 3 119101176 G A 38 94 BRCA TCGA-BH-A1EX VPS8 SNP Missense_Mutation 3 184644419 G A 37 99 BRCA TCGA-BH-A1EX CELSR3 SNP Missense_Mutation 3 48677270 G A 35 96 BRCA TCGA-BH-A1EX PITX2 SNP Missense_Mutation 4 111539459 G A 40 100 BRCA TCGA-BH-A1EX IL12B SNP Missense_Mutation 5 158750314 A G 14 37 BRCA TCGA-BH-A1EX MAP3K1 SNP Missense_Mutation 5 56152545 T C 51 87 BRCA TCGA-BH-A1EX PAPD4 SNP Splice_site 5 78975402 C G 28 60 BRCA TCGA-BH-A1EX OR2A7 SNP Missense_Mutation 7 143955884 A C 3 55 BRCA TCGA-BH-A1EX PXDNL SNP Nonsense_Mutation 8 52321348 G A 38 43 BRCA TCGA-BH-A1EX RGS3 SNP Missense_Mutation 9 116359127 A G 7 90 BRCA TCGA-BH-A1EX CCDC171 SNP Missense_Mutation 9 15784567 C T 31 66 BRCA TCGA-BH-A1EY FLG2 SNP Missense_Mutation 1 152329372 G A 33 65 BRCA TCGA-BH-A1EY GNPAT SNP Silent 1 231406538 C T 25 67 BRCA TCGA-BH-A1EY SH3D21 SNP Missense_Mutation 1 36785498 A G 5 52 BRCA TCGA-BH-A1EY MACF1 SNP Silent 1 39918358 G A 39 38 BRCA TCGA-BH-A1EY TESK2 SNP Silent 1 45821107 C T 30 51 BRCA TCGA-BH-A1EY INADL SNP Missense_Mutation 1 62293124 C T 31 80 BRCA TCGA-BH-A1EY JAK1 SNP Splice_Site 1 65307285 C G 32 93 BRCA TCGA-BH-A1EY SEC31B SNP Silent 10 102266117 C T 24 61 BRCA TCGA-BH-A1EY ADD3 SNP Silent 10 111860429 C T 26 52 BRCA TCGA-BH-A1EY ANK3 SNP Missense_Mutation 10 61833656 C T 19 99 BRCA TCGA-BH-A1EY GUCY2C SNP Silent 12 14774139 G A 37 49 BRCA TCGA-BH-A1EY GUCY2C SNP Silent 12 14822720 A C 7 29 BRCA TCGA-BH-A1EY ITPR2 SNP Missense_Mutation 12 26818867 C T 29 100 BRCA TCGA-BH-A1EY USP15 SNP Silent 12 62749202 C G 26 65 BRCA TCGA-BH-A1EY FERMT2 DEL Splice_Site 14 53417294 TCCTGCGAGCGCGGAGGAAATGGC - 62 66 BRCA TCGA-BH-A1EY ZFYVE19 SNP Missense_Mutation 15 41099876 G T 42 50 BRCA TCGA-BH-A1EY DYX1C1 SNP Missense_Mutation 15 55727242 G A 40 60 BRCA TCGA-BH-A1EY MAP2K4 SNP Splice_Site 17 12044463 G C 33 98 BRCA TCGA-BH-A1EY CCDC144A SNP Missense_Mutation 17 16612273 G C 35 45 BRCA TCGA-BH-A1EY TP53 SNP Splice_site 17 7578553 T C 57 89 BRCA TCGA-BH-A1EY ALOXE3 SNP Missense_Mutation 17 7999968 T A 51 61 BRCA TCGA-BH-A1EY ARHGAP35 SNP Silent 19 47422652 C T 29 58 BRCA TCGA-BH-A1EY VRK3 SNP Silent 19 50491661 G A 47 54 BRCA TCGA-BH-A1EY NR1H2 INS In_Frame_Ins 19 50881820 - AAC 9 70 BRCA TCGA-BH-A1EY ZNF331 SNP Nonsense_Mutation 19 54080627 C G 19 45 BRCA TCGA-BH-A1EY NCR1 SNP Missense_Mutation 19 55417683 G A 38 30 BRCA TCGA-BH-A1EY TTN SNP Silent 2 179527763 C T 31 43 BRCA TCGA-BH-A1EY PGAP1 SNP Missense_Mutation 2 197744811 G A 37 60 BRCA TCGA-BH-A1EY SPHKAP SNP Silent 2 228882873 G T 45 42 BRCA TCGA-BH-A1EY USP34 SNP Missense_Mutation 2 61575105 A G 3 89 BRCA TCGA-BH-A1EY SLC4A5 SNP Silent 2 74477542 G A 45 83 BRCA TCGA-BH-A1EY SMYD1 SNP Silent 2 88405936 G A 39 2 BRCA TCGA-BH-A1EY SEL1L2 SNP Nonsense_Mutation 20 13846124 C A 29 94 BRCA TCGA-BH-A1EY CHD6 SNP Missense_Mutation 20 40143457 G C 33 90 BRCA TCGA-BH-A1EY COL18A1 SNP Missense_Mutation 21 46875461 G A 48 73 BRCA TCGA-BH-A1EY MGAT3 SNP Missense_Mutation 22 39884229 C T 27 81 BRCA TCGA-BH-A1EY MAGEB1 SNP Silent 23 30268685 C G 29 45 BRCA TCGA-BH-A1EY COL6A5 SNP Missense_Mutation 3 130120614 T G 63 59 BRCA TCGA-BH-A1EY PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A1EY SEC24D SNP Missense_Mutation 4 119718868 G C 45 57 BRCA TCGA-BH-A1EY SLC26A4 SNP Missense_Mutation 7 107353011 A G 14 73 BRCA TCGA-BH-A1EY MLL3 SNP Missense_Mutation 7 151860481 C T 20 75 BRCA TCGA-BH-A1EY PINX1 SNP Missense_Mutation 8 10623041 C T 26 41 BRCA TCGA-BH-A1EY RSPO2 SNP Missense_Mutation 8 108973037 T A 52 80 BRCA TCGA-BH-A1EY TGS1 SNP Missense_Mutation 8 56723652 G C 45 100 BRCA TCGA-BH-A1EY DCAF10 SNP Silent 9 37861271 C G 23 48 BRCA TCGA-BH-A1F0 CR1 SNP Missense_Mutation 1 207796386 C A 32 40 BRCA TCGA-BH-A1F0 GALNT2 SNP Silent 1 230384985 G A 44 47 BRCA TCGA-BH-A1F0 ELTD1 SNP Nonsense_Mutation 1 79357327 C T 21 100 BRCA TCGA-BH-A1F0 BCAR3 SNP Missense_Mutation 1 94048116 C G 29 71 BRCA TCGA-BH-A1F0 DCDC5 SNP Nonsense_Mutation 11 30937137 G A 39 51 BRCA TCGA-BH-A1F0 ENSG00000180574 SNP Missense_Mutation 12 10659202 T C 60 75 BRCA TCGA-BH-A1F0 GPC5 SNP Missense_Mutation 13 92345944 G A 48 67 BRCA TCGA-BH-A1F0 TP53 DEL Frame_Shift_Del 17 7578491 C - 18 97 BRCA TCGA-BH-A1F0 ANKRD24 SNP Missense_Mutation 19 4217300 G A 38 77 BRCA TCGA-BH-A1F0 SYMPK SNP Silent 19 46319770 G A 47 55 BRCA TCGA-BH-A1F0 ZDBF2 SNP Nonsense_Mutation 2 207170990 G T 45 56 BRCA TCGA-BH-A1F0 ASXL2 SNP Missense_Mutation 2 25967231 C T 32 96 BRCA TCGA-BH-A1F0 TSHZ2 SNP Missense_Mutation 20 51870526 C A 24 57 BRCA TCGA-BH-A1F0 PRR14L SNP Missense_Mutation 22 32112726 C T 21 52 BRCA TCGA-BH-A1F0 OPN1LW SNP Silent 23 153416306 C T 31 13 BRCA TCGA-BH-A1F0 CREBRF SNP Missense_Mutation 5 172535710 G C 41 97 BRCA TCGA-BH-A1F0 SGK1 SNP Silent 6 134492799 G C 33 51 BRCA TCGA-BH-A1F0 SGK1 SNP Nonsense_Mutation 6 134493422 G T 45 100 BRCA TCGA-BH-A1F0 NT5E SNP Silent 6 86201888 T C 51 49 BRCA TCGA-BH-A1F0 ITGB8 SNP Missense_Mutation 7 20441487 A T 11 70 BRCA TCGA-BH-A1F0 ABCB1 SNP Missense_Mutation 7 87148753 C G 30 100 BRCA TCGA-BH-A1F2 AADACL4 SNP Silent 1 12726620 C T 27 41 BRCA TCGA-BH-A1F2 SPTA1 SNP Missense_Mutation 1 158604413 C G 29 76 BRCA TCGA-BH-A1F2 LAMC1 SNP Missense_Mutation 1 183090900 C T 24 59 BRCA TCGA-BH-A1F2 TROVE2 SNP Missense_Mutation 1 193038629 C T 23 58 BRCA TCGA-BH-A1F2 CFH SNP Missense_Mutation 1 196696041 G C 41 77 BRCA TCGA-BH-A1F2 CFHR5 SNP Silent 1 196973945 A G 2 48 BRCA TCGA-BH-A1F2 BATF3 SNP Missense_Mutation 1 212860284 C T 23 68 BRCA TCGA-BH-A1F2 SCCPDH SNP Missense_Mutation 1 246890254 C T 31 84 BRCA TCGA-BH-A1F2 ABCC2 SNP Missense_Mutation 10 101557000 G A 39 71 BRCA TCGA-BH-A1F2 FAM171A1 SNP Missense_Mutation 10 15256166 C A 32 54 BRCA TCGA-BH-A1F2 FRMPD2 SNP Missense_Mutation 10 49450274 G A 33 75 BRCA TCGA-BH-A1F2 OR5B3 SNP Missense_Mutation 11 58170702 G C 33 60 BRCA TCGA-BH-A1F2 OR52E8 SNP Missense_Mutation 11 5878074 C G 18 54 BRCA TCGA-BH-A1F2 RPS6KB2 SNP Silent 11 67196636 G A 45 55 BRCA TCGA-BH-A1F2 PUS1 SNP Missense_Mutation 12 132426329 G A 38 99 BRCA TCGA-BH-A1F2 KIF5A SNP Missense_Mutation 12 57957940 G A 37 66 BRCA TCGA-BH-A1F2 TUBA3C SNP Missense_Mutation 13 19752468 T A 50 76 BRCA TCGA-BH-A1F2 ABCC4 SNP Silent 13 95861807 C A 31 32 BRCA TCGA-BH-A1F2 EIF5 SNP Silent 14 103803551 C G 29 78 BRCA TCGA-BH-A1F2 ATG2B SNP Silent 14 96777942 C A 29 57 BRCA TCGA-BH-A1F2 SLX4 SNP Missense_Mutation 16 3641097 C T 29 88 BRCA TCGA-BH-A1F2 NUFIP2 SNP Missense_Mutation 17 27621071 C G 30 80 BRCA TCGA-BH-A1F2 FASN DEL In_Frame_Del 17 80051484 GAA - 37 46 BRCA TCGA-BH-A1F2 GLP2R SNP Splice_site 17 9739689 C A 25 38 BRCA TCGA-BH-A1F2 ZNF284 SNP Missense_Mutation 19 44590278 C T 29 52 BRCA TCGA-BH-A1F2 KLC3 SNP Silent 19 45848976 C T 23 18 BRCA TCGA-BH-A1F2 ZNF547 SNP Missense_Mutation 19 57883271 C T 29 56 BRCA TCGA-BH-A1F2 AFF3 SNP Silent 2 100194863 C T 27 45 BRCA TCGA-BH-A1F2 ACVR2A SNP Missense_Mutation 2 148676044 A T 4 92 BRCA TCGA-BH-A1F2 TTN SNP Splice_site 2 179497253 C T 24 100 BRCA TCGA-BH-A1F2 DNAH7 SNP Silent 2 196762433 T C 61 57 BRCA TCGA-BH-A1F2 NBEAL1 SNP Missense_Mutation 2 204030948 G T 48 56 BRCA TCGA-BH-A1F2 ATAD2B SNP Missense_Mutation 2 23980928 T A 56 62 BRCA TCGA-BH-A1F2 LAMP5 SNP Missense_Mutation 20 9510417 A T 5 76 BRCA TCGA-BH-A1F2 COL4A6 SNP Missense_Mutation 23 107435784 C A 21 79 BRCA TCGA-BH-A1F2 ZFP92 SNP Missense_Mutation 23 152686448 G A 37 73 BRCA TCGA-BH-A1F2 MAGED1 SNP Nonsense_Mutation 23 51640687 G T 33 71 BRCA TCGA-BH-A1F2 EDA SNP Silent 23 68836476 G A 34 49 BRCA TCGA-BH-A1F2 C3orf24 SNP Missense_Mutation 3 10146113 C T 23 81 BRCA TCGA-BH-A1F2 DBR1 SNP Silent 3 137886067 A C 13 50 BRCA TCGA-BH-A1F2 WWC2 SNP Nonsense_Mutation 4 184129264 C T 27 96 BRCA TCGA-BH-A1F2 FBXL7 SNP Missense_Mutation 5 15928218 G A 39 82 BRCA TCGA-BH-A1F2 ADAMTS2 SNP Splice_Site 5 178548660 A G 14 86 BRCA TCGA-BH-A1F2 C7orf57 SNP Silent 7 48080992 C T 22 50 BRCA TCGA-BH-A1F2 VPS13B SNP Silent 8 100832306 C T 32 71 BRCA TCGA-BH-A1F2 BAI1 SNP Missense_Mutation 8 143560728 G A 40 60 BRCA TCGA-BH-A1F2 CNBD1 SNP Missense_Mutation 8 87878778 A G 5 70 BRCA TCGA-BH-A1F2 CNTNAP3 SNP Silent 9 39177396 C T 27 33 BRCA TCGA-BH-A1F2 PCSK5 SNP Missense_Mutation 9 78789962 C G 18 71 BRCA TCGA-BH-A1F5 PRAMEF4 SNP Missense_Mutation 1 12942944 A T 3 58 BRCA TCGA-BH-A1F5 ILF2 SNP Missense_Mutation 1 153635506 G T 35 58 BRCA TCGA-BH-A1F5 KCNK18 SNP Silent 10 118957011 G A 39 42 BRCA TCGA-BH-A1F5 PRPF19 SNP Missense_Mutation 11 60668993 A C 6 90 BRCA TCGA-BH-A1F5 TMED2 SNP Missense_Mutation 12 124081212 T A 60 93 BRCA TCGA-BH-A1F5 LRRC16B SNP Missense_Mutation 14 24538005 C G 22 61 BRCA TCGA-BH-A1F5 APOBR SNP Missense_Mutation 16 28506765 C T 21 50 BRCA TCGA-BH-A1F5 CNOT1 SNP Missense_Mutation 16 58589747 T A 64 93 BRCA TCGA-BH-A1F5 CENPBD1 SNP Missense_Mutation 16 90038321 C T 30 49 BRCA TCGA-BH-A1F5 SLC2A4 SNP Missense_Mutation 17 7187613 C T 30 50 BRCA TCGA-BH-A1F5 GREB1L SNP Missense_Mutation 18 18983893 C T 31 85 BRCA TCGA-BH-A1F5 BCL3 DEL Frame_Shift_Del 19 45260669 AGTGGTGAGCGT - 7 33 BRCA TCGA-BH-A1F5 PEG3 SNP Missense_Mutation 19 57327932 C T 17 41 BRCA TCGA-BH-A1F5 LRP1B SNP Silent 2 141806577 C T 32 48 BRCA TCGA-BH-A1F5 ASAP2 SNP Silent 2 9528605 A C 6 13 BRCA TCGA-BH-A1F5 COL9A3 SNP Missense_Mutation 20 61467665 A T 6 60 BRCA TCGA-BH-A1F5 ZGPAT SNP Silent 20 62366833 G T 42 64 BRCA TCGA-BH-A1F5 DEPDC5 SNP Missense_Mutation 22 32188070 T A 53 88 BRCA TCGA-BH-A1F5 PLXNB3 SNP Silent 23 153032741 C T 18 61 BRCA TCGA-BH-A1F5 ARAF SNP Missense_Mutation 23 47430836 G A 38 54 BRCA TCGA-BH-A1F5 RNF212 SNP Silent 4 1107207 T G 55 47 BRCA TCGA-BH-A1F5 BTNL8 SNP Missense_Mutation 5 180377494 G A 45 54 BRCA TCGA-BH-A1F5 MAP3K1 SNP Nonsense_Mutation 5 56178169 C T 29 91 BRCA TCGA-BH-A1F5 RASGRF2 SNP Missense_Mutation 5 80381624 C T 22 100 BRCA TCGA-BH-A1F5 GPANK1 SNP Missense_Mutation 6 31631634 T A 64 72 BRCA TCGA-BH-A1F5 TG SNP Nonsense_Mutation 8 133984055 C T 19 61 BRCA TCGA-BH-A1F5 ZNF462 SNP Silent 9 109771899 G A 43 58 BRCA TCGA-BH-A1F5 PTGS1 SNP Missense_Mutation 9 125154645 C T 23 99 BRCA TCGA-BH-A1F6 SLC16A4 SNP Missense_Mutation 1 110919758 A C 13 44 BRCA TCGA-BH-A1F6 LRRC47 SNP Missense_Mutation 1 3697704 G C 39 91 BRCA TCGA-BH-A1F6 ITGB1 SNP Missense_Mutation 10 33212629 A G 2 92 BRCA TCGA-BH-A1F6 ACTA2 SNP Missense_Mutation 10 90708572 C T 19 99 BRCA TCGA-BH-A1F6 HPX DEL Frame_Shift_Del 11 6458782 GCGGCCCAGCCATCTCAGG - 34 68 BRCA TCGA-BH-A1F6 OR2D2 SNP Silent 11 6913561 T G 59 51 BRCA TCGA-BH-A1F6 NAA25 SNP Silent 12 112509715 G A 40 40 BRCA TCGA-BH-A1F6 KDM5A DEL Splice_Site 12 432949 TGAAA - 55 94 BRCA TCGA-BH-A1F6 ATN1 SNP Missense_Mutation 12 7045008 G A 41 57 BRCA TCGA-BH-A1F6 C1RL SNP Missense_Mutation 12 7249748 G A 42 87 BRCA TCGA-BH-A1F6 TMTC4 SNP Missense_Mutation 13 101264696 T A 51 90 BRCA TCGA-BH-A1F6 SLITRK1 SNP Silent 13 84453897 G A 40 50 BRCA TCGA-BH-A1F6 MMP14 SNP Silent 14 23314529 A G 3 61 BRCA TCGA-BH-A1F6 NEMF SNP Missense_Mutation 14 50281529 T C 49 85 BRCA TCGA-BH-A1F6 PSMA3 SNP Silent 14 58727696 C T 19 45 BRCA TCGA-BH-A1F6 SMEK1 SNP Missense_Mutation 14 91937280 C T 30 88 BRCA TCGA-BH-A1F6 RYR3 SNP Missense_Mutation 15 34105734 G C 42 98 BRCA TCGA-BH-A1F6 RYR3 SNP Splice_Site 15 34140623 G A 40 100 BRCA TCGA-BH-A1F6 CCPG1 SNP Missense_Mutation 15 55653040 T C 56 55 BRCA TCGA-BH-A1F6 EEF2K SNP Missense_Mutation 16 22262009 G A 39 85 BRCA TCGA-BH-A1F6 EEF2K SNP Missense_Mutation 16 22295264 G A 42 98 BRCA TCGA-BH-A1F6 DUS2L SNP Missense_Mutation 16 68087509 T A 60 82 BRCA TCGA-BH-A1F6 NFAT5 SNP Missense_Mutation 16 69725862 G T 46 66 BRCA TCGA-BH-A1F6 SPIRE2 DEL Frame_Shift_Del 16 89924855 GCCCC - 42 52 BRCA TCGA-BH-A1F6 MYH2 SNP Silent 17 10443330 C T 28 57 BRCA TCGA-BH-A1F6 TMEM106A SNP Missense_Mutation 17 41365219 T G 51 56 BRCA TCGA-BH-A1F6 MMD SNP Silent 17 53491548 A T 3 49 BRCA TCGA-BH-A1F6 TP53 SNP Missense_Mutation 17 7578551 A G 11 89 BRCA TCGA-BH-A1F6 ALOX15B SNP Missense_Mutation 17 7942523 G A 42 66 BRCA TCGA-BH-A1F6 NPC1 SNP Missense_Mutation 18 21136530 A T 3 47 BRCA TCGA-BH-A1F6 SYDE1 SNP Silent 19 15224594 C T 18 79 BRCA TCGA-BH-A1F6 SIN3B INS Frame_Shift_Ins 19 16976441 - C 58 90 BRCA TCGA-BH-A1F6 ZNF208 SNP Missense_Mutation 19 22155521 G A 36 70 BRCA TCGA-BH-A1F6 PRX SNP Silent 19 40901699 G A 33 51 BRCA TCGA-BH-A1F6 PRX SNP Silent 19 40902909 G C 45 52 BRCA TCGA-BH-A1F6 PRX SNP Silent 19 40903119 G C 45 54 BRCA TCGA-BH-A1F6 RFX2 SNP Silent 19 6007781 G A 41 50 BRCA TCGA-BH-A1F6 FOXD4L1 SNP Missense_Mutation 2 114257296 A G 8 79 BRCA TCGA-BH-A1F6 MYO7B SNP Missense_Mutation 2 128334255 C T 19 50 BRCA TCGA-BH-A1F6 PASK SNP Missense_Mutation 2 242065791 C G 19 29 BRCA TCGA-BH-A1F6 KLHL6 SNP Silent 3 183209883 C A 22 41 BRCA TCGA-BH-A1F6 INTU SNP Missense_Mutation 4 128637566 A C 1 66 BRCA TCGA-BH-A1F6 NOP14 SNP Silent 4 2945909 C T 17 55 BRCA TCGA-BH-A1F6 PCDHGA11 SNP Silent 5 140802474 G A 38 36 BRCA TCGA-BH-A1F6 TCOF1 SNP Missense_Mutation 5 149755799 C T 28 58 BRCA TCGA-BH-A1F6 KIFC1 SNP Missense_Mutation 6 33374639 G A 38 91 BRCA TCGA-BH-A1F6 NPTX2 SNP Silent 7 98257809 T C 63 52 BRCA TCGA-BH-A1F6 INTS10 SNP Missense_Mutation 8 19677944 C G 19 96 BRCA TCGA-BH-A1F6 FGFR1 SNP Silent 8 38282147 G A 40 49 BRCA TCGA-BH-A1F6 ASPH SNP Silent 8 62460693 C T 29 54 BRCA TCGA-BH-A1F6 OR1Q1 SNP Silent 9 125377241 C T 21 50 BRCA TCGA-BH-A1F8 SLC25A24 SNP Missense_Mutation 1 108742651 C G 30 84 BRCA TCGA-BH-A1F8 SETDB1 INS Frame_Shift_Ins 1 150931666 - A 57 57 BRCA TCGA-BH-A1F8 FLG SNP Missense_Mutation 1 152279012 C G 30 44 BRCA TCGA-BH-A1F8 ATP8B2 SNP Missense_Mutation 1 154303324 C G 32 63 BRCA TCGA-BH-A1F8 FLAD1 SNP Nonsense_Mutation 1 154961309 C G 17 63 BRCA TCGA-BH-A1F8 ARHGEF11 SNP Missense_Mutation 1 156915948 C T 29 94 BRCA TCGA-BH-A1F8 RAB7L1 SNP Nonsense_Mutation 1 205739909 C T 21 87 BRCA TCGA-BH-A1F8 OBSCN SNP Nonsense_Mutation 1 228538601 C T 21 96 BRCA TCGA-BH-A1F8 GRHL3 SNP Missense_Mutation 1 24657969 C G 32 100 BRCA TCGA-BH-A1F8 SLC2A7 SNP Missense_Mutation 1 9074847 C T 31 72 BRCA TCGA-BH-A1F8 ARHGAP29 SNP Missense_Mutation 1 94668277 C G 32 53 BRCA TCGA-BH-A1F8 TIAL1 SNP Missense_Mutation 10 121337005 A C 8 90 BRCA TCGA-BH-A1F8 CCAR1 SNP Nonsense_Mutation 10 70482304 C T 29 91 BRCA TCGA-BH-A1F8 PTEN SNP Missense_Mutation 10 89653845 A T 2 86 BRCA TCGA-BH-A1F8 TBCEL SNP Missense_Mutation 11 120929104 G C 41 87 BRCA TCGA-BH-A1F8 MUC5B SNP Missense_Mutation 11 1254384 C T 27 46 BRCA TCGA-BH-A1F8 BRSK2 SNP Silent 11 1466828 C T 30 66 BRCA TCGA-BH-A1F8 ABCC8 SNP Missense_Mutation 11 17470166 C T 30 98 BRCA TCGA-BH-A1F8 SCGB1C1 SNP Missense_Mutation 11 193718 C T 26 65 BRCA TCGA-BH-A1F8 KCNA4 SNP Missense_Mutation 11 30032528 G T 33 66 BRCA TCGA-BH-A1F8 RNH1 SNP Nonsense_Mutation 11 499131 G C 45 57 BRCA TCGA-BH-A1F8 OR51I1 SNP Silent 11 5462646 G A 33 74 BRCA TCGA-BH-A1F8 PPME1 SNP Missense_Mutation 11 73882561 G C 37 81 BRCA TCGA-BH-A1F8 MYO7A SNP Missense_Mutation 11 76893573 G A 45 97 BRCA TCGA-BH-A1F8 STAB2 SNP Nonsense_Mutation 12 104140458 G T 45 61 BRCA TCGA-BH-A1F8 CCDC60 SNP Missense_Mutation 12 119942952 C T 31 58 BRCA TCGA-BH-A1F8 TMEM233 SNP Missense_Mutation 12 120031720 G A 45 86 BRCA TCGA-BH-A1F8 HIP1R SNP Silent 12 123333101 C G 29 67 BRCA TCGA-BH-A1F8 C12orf36 SNP Silent 12 13526234 C T 29 41 BRCA TCGA-BH-A1F8 SLC6A12 SNP Missense_Mutation 12 313734 G A 41 53 BRCA TCGA-BH-A1F8 FGD4 SNP Missense_Mutation 12 32793219 G A 34 96 BRCA TCGA-BH-A1F8 EFCAB4B SNP Silent 12 3757680 C G 29 46 BRCA TCGA-BH-A1F8 FAM186A SNP Missense_Mutation 12 50754707 C T 29 47 BRCA TCGA-BH-A1F8 ERBB3 SNP Missense_Mutation 12 56489535 G T 40 91 BRCA TCGA-BH-A1F8 DYRK2 SNP Silent 12 68051050 G A 47 50 BRCA TCGA-BH-A1F8 TMTC2 SNP Missense_Mutation 12 83359365 C G 32 74 BRCA TCGA-BH-A1F8 GPR12 SNP Silent 13 27333626 C T 28 56 BRCA TCGA-BH-A1F8 KIAA1704 SNP Missense_Mutation 13 45563856 G A 37 59 BRCA TCGA-BH-A1F8 LPAR6 SNP Silent 13 48985612 G A 33 62 BRCA TCGA-BH-A1F8 DIS3 SNP Missense_Mutation 13 73351596 C T 31 95 BRCA TCGA-BH-A1F8 LRR1 SNP Missense_Mutation 14 50069163 C T 30 62 BRCA TCGA-BH-A1F8 SIX1 SNP Nonsense_Mutation 14 61115628 C A 30 100 BRCA TCGA-BH-A1F8 CLMN SNP Missense_Mutation 14 95669924 C T 29 56 BRCA TCGA-BH-A1F8 CAPN3 SNP Missense_Mutation 15 42652049 G A 45 75 BRCA TCGA-BH-A1F8 MYO5C SNP Missense_Mutation 15 52529738 C T 28 53 BRCA TCGA-BH-A1F8 UNC13C SNP Missense_Mutation 15 54586231 G C 45 64 BRCA TCGA-BH-A1F8 TLE3 SNP Splice_Site 15 70347638 C G 32 95 BRCA TCGA-BH-A1F8 MORF4L1 SNP Missense_Mutation 15 79179664 C G 32 81 BRCA TCGA-BH-A1F8 HS3ST4 SNP Missense_Mutation 16 26147270 G A 45 99 BRCA TCGA-BH-A1F8 CLN3 SNP Missense_Mutation 16 28498999 G A 45 81 BRCA TCGA-BH-A1F8 ADCY7 SNP Missense_Mutation 16 50326656 G C 41 65 BRCA TCGA-BH-A1F8 TEPP SNP Silent 16 58018668 C T 31 50 BRCA TCGA-BH-A1F8 HYDIN SNP Silent 16 71098725 G C 41 56 BRCA TCGA-BH-A1F8 PMFBP1 SNP Missense_Mutation 16 72159902 C T 27 42 BRCA TCGA-BH-A1F8 ZNF469 SNP Missense_Mutation 16 88497563 G A 45 66 BRCA TCGA-BH-A1F8 ABR SNP Silent 17 1012303 C T 24 48 BRCA TCGA-BH-A1F8 VTN SNP Missense_Mutation 17 26697169 G T 34 67 BRCA TCGA-BH-A1F8 AP2B1 SNP Missense_Mutation 17 34044241 A G 2 92 BRCA TCGA-BH-A1F8 PTRF SNP Missense_Mutation 17 40556818 C G 30 76 BRCA TCGA-BH-A1F8 CYB5D2 SNP Splice_site 17 4060161 G T 47 85 BRCA TCGA-BH-A1F8 AOC2 SNP Silent 17 40997999 A T 7 40 BRCA TCGA-BH-A1F8 G6PC SNP Missense_Mutation 17 41053005 G A 33 100 BRCA TCGA-BH-A1F8 TMC8 SNP Missense_Mutation 17 76133392 G A 33 59 BRCA TCGA-BH-A1F8 CCDC42 SNP Nonsense_Mutation 17 8638833 C A 29 83 BRCA TCGA-BH-A1F8 STX8 SNP Missense_Mutation 17 9408460 C G 32 57 BRCA TCGA-BH-A1F8 ADNP2 SNP Missense_Mutation 18 77895655 G A 33 81 BRCA TCGA-BH-A1F8 AP1M2 SNP Silent 19 10691955 G A 37 46 BRCA TCGA-BH-A1F8 NFIC SNP Missense_Mutation 19 3456562 G A 37 60 BRCA TCGA-BH-A1F8 DMKN SNP Missense_Mutation 19 36003351 G A 45 62 BRCA TCGA-BH-A1F8 ZNF829 SNP Missense_Mutation 19 37382578 C T 32 62 BRCA TCGA-BH-A1F8 EEF2 SNP Silent 19 3980544 C T 32 74 BRCA TCGA-BH-A1F8 CHAF1A SNP Missense_Mutation 19 4442293 G A 33 90 BRCA TCGA-BH-A1F8 CNOT3 SNP Missense_Mutation 19 54659091 G T 33 63 BRCA TCGA-BH-A1F8 NLRP9 SNP Missense_Mutation 19 56243480 C T 21 48 BRCA TCGA-BH-A1F8 MUC16 SNP Missense_Mutation 19 9059785 C T 32 53 BRCA TCGA-BH-A1F8 INSIG2 SNP Silent 2 118864687 C G 32 51 BRCA TCGA-BH-A1F8 NEB SNP Missense_Mutation 2 152544005 C G 29 75 BRCA TCGA-BH-A1F8 UBR3 SNP Missense_Mutation 2 170863687 C T 23 78 BRCA TCGA-BH-A1F8 TTN SNP Missense_Mutation 2 179426695 C T 32 48 BRCA TCGA-BH-A1F8 TTN SNP Silent 2 179604271 G A 40 55 BRCA TCGA-BH-A1F8 SSFA2 SNP Silent 2 182794293 C A 25 50 BRCA TCGA-BH-A1F8 ANKAR SNP Silent 2 190593522 C T 29 66 BRCA TCGA-BH-A1F8 SATB2 SNP Missense_Mutation 2 200173524 G A 40 76 BRCA TCGA-BH-A1F8 ZNF142 SNP Silent 2 219508614 G A 45 58 BRCA TCGA-BH-A1F8 ARMC9 SNP Missense_Mutation 2 232079614 C T 29 87 BRCA TCGA-BH-A1F8 CHRND SNP Missense_Mutation 2 233399028 G A 45 76 BRCA TCGA-BH-A1F8 TRPM8 SNP Missense_Mutation 2 234858761 G C 45 82 BRCA TCGA-BH-A1F8 IQCA1 SNP Missense_Mutation 2 237308074 C T 24 77 BRCA TCGA-BH-A1F8 CCT7 SNP Silent 2 73471840 C T 31 40 BRCA TCGA-BH-A1F8 ADRA2B SNP Missense_Mutation 2 96781346 G C 33 61 BRCA TCGA-BH-A1F8 KIF16B SNP Silent 20 16496280 C T 29 63 BRCA TCGA-BH-A1F8 C20orf173 SNP Nonsense_Mutation 20 34116299 G T 45 56 BRCA TCGA-BH-A1F8 ELMO2 SNP Silent 20 44999096 G A 33 98 BRCA TCGA-BH-A1F8 C21orf7 SNP Silent 21 30464781 A G 5 48 BRCA TCGA-BH-A1F8 SCAF4 SNP Silent 21 33044075 G A 44 47 BRCA TCGA-BH-A1F8 DEPDC5 SNP Missense_Mutation 22 32257357 G A 39 71 BRCA TCGA-BH-A1F8 PDGFB SNP Splice_site 22 39636860 G T 37 50 BRCA TCGA-BH-A1F8 MUM1L1 SNP Missense_Mutation 23 105450345 C T 25 42 BRCA TCGA-BH-A1F8 KLHL15 SNP Silent 23 24024511 G A 39 45 BRCA TCGA-BH-A1F8 FOXP3 SNP Missense_Mutation 23 49113997 C T 23 63 BRCA TCGA-BH-A1F8 NUDT10 INS Frame_Shift_Ins 23 51075962 - A 43 86 BRCA TCGA-BH-A1F8 SHROOM2 SNP Missense_Mutation 23 9900268 C T 23 47 BRCA TCGA-BH-A1F8 RHO SNP Missense_Mutation 3 129251468 C G 32 55 BRCA TCGA-BH-A1F8 IQCJ-SCHIP1 SNP Missense_Mutation 3 159605599 G A 45 100 BRCA TCGA-BH-A1F8 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A1F8 ZNF502 SNP Missense_Mutation 3 44763099 G A 33 72 BRCA TCGA-BH-A1F8 FOXP1 SNP Missense_Mutation 3 71026112 G C 40 100 BRCA TCGA-BH-A1F8 OTUD4 SNP Missense_Mutation 4 146067547 G A 45 62 BRCA TCGA-BH-A1F8 LDB2 SNP Missense_Mutation 4 16504411 G A 40 99 BRCA TCGA-BH-A1F8 SH3RF1 SNP Silent 4 170057685 G A 43 58 BRCA TCGA-BH-A1F8 FAT1 SNP Missense_Mutation 4 187541561 G A 33 84 BRCA TCGA-BH-A1F8 FAM193A SNP Missense_Mutation 4 2632760 C T 31 99 BRCA TCGA-BH-A1F8 MUC7 SNP Missense_Mutation 4 71347020 G A 33 50 BRCA TCGA-BH-A1F8 WDFY3 SNP Missense_Mutation 4 85678260 C T 31 88 BRCA TCGA-BH-A1F8 AFF1 DEL In_Frame_Del 4 88035829 CTGTCAAGGCCT - 24 73 BRCA TCGA-BH-A1F8 CDKL3 SNP Missense_Mutation 5 133695701 C T 29 89 BRCA TCGA-BH-A1F8 NR3C1 SNP Missense_Mutation 5 142780154 A C 11 81 BRCA TCGA-BH-A1F8 C1QTNF2 SNP Silent 5 159776691 G A 40 42 BRCA TCGA-BH-A1F8 RUFY1 SNP Missense_Mutation 5 179020635 C T 29 76 BRCA TCGA-BH-A1F8 CDH12 SNP Missense_Mutation 5 21975470 C T 32 83 BRCA TCGA-BH-A1F8 IL7R SNP Missense_Mutation 5 35857117 C G 32 51 BRCA TCGA-BH-A1F8 SEPP1 SNP Silent 5 42801110 G C 33 55 BRCA TCGA-BH-A1F8 ZSWIM6 SNP Missense_Mutation 5 60822199 G C 41 85 BRCA TCGA-BH-A1F8 RASGRF2 SNP Silent 5 80382663 C T 19 47 BRCA TCGA-BH-A1F8 LAMA2 SNP Silent 6 129835646 C T 29 60 BRCA TCGA-BH-A1F8 HIVEP2 SNP Silent 6 143094076 C T 23 22 BRCA TCGA-BH-A1F8 HIST1H3B SNP Nonsense_Mutation 6 26032006 C A 30 98 BRCA TCGA-BH-A1F8 TNXB SNP Silent 6 32065667 C T 29 70 BRCA TCGA-BH-A1F8 KIF6 SNP Missense_Mutation 6 39507966 C G 32 83 BRCA TCGA-BH-A1F8 SLC35B2 SNP Splice_site 6 44222443 T C 54 62 BRCA TCGA-BH-A1F8 ORC3 SNP Missense_Mutation 6 88372852 A G 16 61 BRCA TCGA-BH-A1F8 POLM SNP Splice_site 7 44118410 C A 30 74 BRCA TCGA-BH-A1F8 TMEM248 SNP Missense_Mutation 7 66410096 C T 18 83 BRCA TCGA-BH-A1F8 COL1A2 SNP Missense_Mutation 7 94053669 C T 30 74 BRCA TCGA-BH-A1F8 PKHD1L1 SNP Missense_Mutation 8 110487470 C T 29 79 BRCA TCGA-BH-A1F8 ZHX2 SNP Silent 8 123965814 G A 45 29 BRCA TCGA-BH-A1F8 TGS1 SNP Missense_Mutation 8 56698896 G A 45 72 BRCA TCGA-BH-A1F8 ANGPTL2 SNP Silent 9 129851266 G C 45 53 BRCA TCGA-BH-A1F8 DOLK SNP Missense_Mutation 9 131709575 C T 31 71 BRCA TCGA-BH-A1F8 SEC16A SNP Missense_Mutation 9 139357443 C T 29 77 BRCA TCGA-BH-A1F8 TAF1L SNP Missense_Mutation 9 32632676 C G 32 79 BRCA TCGA-BH-A1F8 KIAA2026 SNP Missense_Mutation 9 5920984 G A 33 65 BRCA TCGA-BH-A1F8 PTPRD SNP Missense_Mutation 9 8465571 G T 45 75 BRCA TCGA-BH-A1F8 HIATL1 INS Frame_Shift_Ins 9 97209196 - T 36 90 BRCA TCGA-BH-A1FC GPSM2 SNP Missense_Mutation 1 109466693 C A 23 73 BRCA TCGA-BH-A1FC FAM40A SNP Splice_site 1 110584264 G T 43 99 BRCA TCGA-BH-A1FC RFX5 SNP Missense_Mutation 1 151315882 T C 64 58 BRCA TCGA-BH-A1FC TCHHL1 SNP Missense_Mutation 1 152059455 C T 24 52 BRCA TCGA-BH-A1FC TNN SNP Missense_Mutation 1 175052966 G A 45 53 BRCA TCGA-BH-A1FC KCNK2 SNP Missense_Mutation 1 215259881 C G 32 84 BRCA TCGA-BH-A1FC USH2A SNP Missense_Mutation 1 215814011 C T 29 55 BRCA TCGA-BH-A1FC ECE1 SNP Missense_Mutation 1 21582517 C T 26 96 BRCA TCGA-BH-A1FC ADCK3 SNP Silent 1 227174270 C A 23 51 BRCA TCGA-BH-A1FC ZNF669 SNP Nonstop_Mutation 1 247264537 C G 29 44 BRCA TCGA-BH-A1FC ZNF669 SNP Splice_Site 1 247264622 C A 32 61 BRCA TCGA-BH-A1FC TFAP2E SNP Missense_Mutation 1 36054084 G A 43 79 BRCA TCGA-BH-A1FC CYP4X1 SNP Missense_Mutation 1 47504392 C G 23 50 BRCA TCGA-BH-A1FC LEPR SNP Nonsense_Mutation 1 66064359 C G 29 52 BRCA TCGA-BH-A1FC TCF7L2 SNP Missense_Mutation 10 114912185 G A 38 98 BRCA TCGA-BH-A1FC PNLIP SNP Missense_Mutation 10 118306869 C T 19 44 BRCA TCGA-BH-A1FC BCCIP SNP Missense_Mutation 10 127519171 A C 9 62 BRCA TCGA-BH-A1FC SLC39A12 SNP Missense_Mutation 10 18289724 A G 16 72 BRCA TCGA-BH-A1FC AGAP5 SNP Splice_site 10 75456920 A C 3 50 BRCA TCGA-BH-A1FC DDX10 SNP Silent 11 108577472 A G 3 49 BRCA TCGA-BH-A1FC OR8B12 SNP Silent 11 124412897 G T 43 52 BRCA TCGA-BH-A1FC OR51Q1 SNP Missense_Mutation 11 5444283 G T 42 57 BRCA TCGA-BH-A1FC EHD1 SNP Missense_Mutation 11 64627773 C T 30 95 BRCA TCGA-BH-A1FC CHORDC1 SNP Missense_Mutation 11 89938730 C T 29 94 BRCA TCGA-BH-A1FC CCDC60 SNP Missense_Mutation 12 119909871 G C 33 58 BRCA TCGA-BH-A1FC CABP1 DEL Frame_Shift_Del 12 121093654 GC - 46 51 BRCA TCGA-BH-A1FC CACNA1C SNP Missense_Mutation 12 2775935 G A 38 97 BRCA TCGA-BH-A1FC SLC6A12 SNP Missense_Mutation 12 301666 T A 56 49 BRCA TCGA-BH-A1FC FMNL3 SNP Missense_Mutation 12 50047562 C G 32 68 BRCA TCGA-BH-A1FC KCNA5 SNP Missense_Mutation 12 5154220 G A 44 56 BRCA TCGA-BH-A1FC NUP107 SNP Missense_Mutation 12 69135678 C T 19 79 BRCA TCGA-BH-A1FC APAF1 SNP Missense_Mutation 12 99074109 G A 45 97 BRCA TCGA-BH-A1FC KPNA3 SNP Missense_Mutation 13 50299608 G A 46 100 BRCA TCGA-BH-A1FC MDP1 SNP Missense_Mutation 14 24683764 A C 1 75 BRCA TCGA-BH-A1FC PPP4R4 SNP Missense_Mutation 14 94718122 G A 37 94 BRCA TCGA-BH-A1FC PAPOLA SNP Missense_Mutation 14 97003383 C A 32 70 BRCA TCGA-BH-A1FC VIMP SNP Missense_Mutation 15 101813007 C T 27 88 BRCA TCGA-BH-A1FC CILP SNP Missense_Mutation 15 65490934 C T 19 78 BRCA TCGA-BH-A1FC ANKRD34C SNP Missense_Mutation 15 79586661 G T 41 50 BRCA TCGA-BH-A1FC SNN SNP Missense_Mutation 16 11769936 C A 26 64 BRCA TCGA-BH-A1FC C16orf62 SNP Missense_Mutation 16 19628021 C T 19 66 BRCA TCGA-BH-A1FC ZNF785 SNP Silent 16 30596492 G T 39 44 BRCA TCGA-BH-A1FC NCOR1 SNP Missense_Mutation 17 15943783 G C 33 54 BRCA TCGA-BH-A1FC PIGS SNP Missense_Mutation 17 26897924 C A 31 68 BRCA TCGA-BH-A1FC MMD SNP Silent 17 53471851 A T 1 55 BRCA TCGA-BH-A1FC MSI2 SNP Missense_Mutation 17 55334455 C T 32 68 BRCA TCGA-BH-A1FC DDX5 SNP Missense_Mutation 17 62496729 A C 3 93 BRCA TCGA-BH-A1FC LRRC37A3 SNP Missense_Mutation 17 62856814 G C 42 46 BRCA TCGA-BH-A1FC TP53 SNP Splice_Site 17 7577610 T C 53 82 BRCA TCGA-BH-A1FC CHD3 SNP Missense_Mutation 17 7797876 G C 45 98 BRCA TCGA-BH-A1FC RFNG SNP Missense_Mutation 17 80008632 C T 17 53 BRCA TCGA-BH-A1FC MYO9B SNP Missense_Mutation 19 17320474 G A 33 93 BRCA TCGA-BH-A1FC ZNF77 SNP Silent 19 2934636 C T 19 33 BRCA TCGA-BH-A1FC CA11 SNP Splice_Site 19 49143044 C T 19 81 BRCA TCGA-BH-A1FC NLRP2 SNP Nonsense_Mutation 19 55512174 G T 33 52 BRCA TCGA-BH-A1FC NEB SNP Missense_Mutation 2 152424595 A G 2 77 BRCA TCGA-BH-A1FC FMNL2 SNP Missense_Mutation 2 153497312 C T 32 100 BRCA TCGA-BH-A1FC SLC40A1 SNP Missense_Mutation 2 190426750 C T 19 100 BRCA TCGA-BH-A1FC KDM3A SNP Silent 2 86709180 C T 17 50 BRCA TCGA-BH-A1FC CNGA3 SNP Missense_Mutation 2 99013092 G A 45 97 BRCA TCGA-BH-A1FC CNGA3 SNP Missense_Mutation 2 99013166 G C 33 74 BRCA TCGA-BH-A1FC KIAA1211L SNP Silent 2 99449358 T C 56 52 BRCA TCGA-BH-A1FC GART SNP Missense_Mutation 21 34903121 C G 30 98 BRCA TCGA-BH-A1FC C21orf58 SNP Missense_Mutation 21 47737979 C G 30 63 BRCA TCGA-BH-A1FC DDX17 SNP Missense_Mutation 22 38891866 C G 32 84 BRCA TCGA-BH-A1FC ZC4H2 SNP Silent 23 64137656 C T 22 57 BRCA TCGA-BH-A1FC YIPF6 SNP Splice_Site 23 67738655 G T 48 88 BRCA TCGA-BH-A1FC CMTM7 SNP Silent 3 32491026 C T 27 48 BRCA TCGA-BH-A1FC OXSR1 SNP Missense_Mutation 3 38224558 C G 29 56 BRCA TCGA-BH-A1FC MST1R SNP Missense_Mutation 3 49939908 C T 29 83 BRCA TCGA-BH-A1FC CPEB2 SNP Missense_Mutation 4 15067831 G A 38 89 BRCA TCGA-BH-A1FC PROM1 INS Frame_Shift_Ins 4 15981063 - A 49 70 BRCA TCGA-BH-A1FC TACC3 SNP Missense_Mutation 4 1737522 G T 36 99 BRCA TCGA-BH-A1FC TEC SNP Splice_Site 4 48148341 C A 18 98 BRCA TCGA-BH-A1FC PPEF2 SNP Splice_Site 4 76804229 C G 24 87 BRCA TCGA-BH-A1FC GRID2 SNP Missense_Mutation 4 94159637 G A 37 90 BRCA TCGA-BH-A1FC SMARCAD1 SNP Missense_Mutation 4 95162063 G C 43 58 BRCA TCGA-BH-A1FC MARCH6 SNP Silent 5 10390504 A C 8 39 BRCA TCGA-BH-A1FC PCDHGA4 SNP Silent 5 140735310 C T 19 37 BRCA TCGA-BH-A1FC SYNE1 SNP Missense_Mutation 6 152861142 C G 20 81 BRCA TCGA-BH-A1FC IPCEF1 SNP Missense_Mutation 6 154489200 G A 45 81 BRCA TCGA-BH-A1FC HLA-DRB1 INS Frame_Shift_Ins 6 32551956 - TT 27 53 BRCA TCGA-BH-A1FC ARMC12 SNP Missense_Mutation 6 35705872 G C 41 77 BRCA TCGA-BH-A1FC EEF1A1 SNP Missense_Mutation 6 74228163 C G 17 98 BRCA TCGA-BH-A1FC COL12A1 SNP Missense_Mutation 6 75887490 T C 54 63 BRCA TCGA-BH-A1FC CNR1 SNP Missense_Mutation 6 88853975 C G 24 100 BRCA TCGA-BH-A1FC RRAGD SNP Missense_Mutation 6 90097153 C T 23 84 BRCA TCGA-BH-A1FC MMS22L SNP Missense_Mutation 6 97613182 C G 32 57 BRCA TCGA-BH-A1FC MUC17 SNP Missense_Mutation 7 100686638 A G 14 50 BRCA TCGA-BH-A1FC CEP41 SNP Missense_Mutation 7 130040629 C T 29 100 BRCA TCGA-BH-A1FC TMEM120A SNP Splice_Site 7 75617568 A C 6 85 BRCA TCGA-BH-A1FC KIAA1324L SNP Missense_Mutation 7 86539164 A G 12 68 BRCA TCGA-BH-A1FC RNF139 INS Frame_Shift_Ins 8 125487355 - G 27 79 BRCA TCGA-BH-A1FC INTS10 SNP Silent 8 19694625 C T 25 51 BRCA TCGA-BH-A1FC NEFM SNP Missense_Mutation 8 24771805 G A 37 84 BRCA TCGA-BH-A1FC GNRH1 SNP Missense_Mutation 8 25280779 C T 28 60 BRCA TCGA-BH-A1FC QSOX2 INS Frame_Shift_Ins 9 139118623 - A 41 67 BRCA TCGA-BH-A1FC SH3GL2 SNP Silent 9 17761476 T A 53 43 BRCA TCGA-BH-A1FC UNC13B SNP Missense_Mutation 9 35396568 G C 48 69 BRCA TCGA-BH-A1FD FAM5B SNP Missense_Mutation 1 177247731 G A 37 64 BRCA TCGA-BH-A1FD PDCD11 SNP Silent 10 105200305 C T 27 54 BRCA TCGA-BH-A1FD TAF3 SNP Missense_Mutation 10 8006644 A G 16 76 BRCA TCGA-BH-A1FD PIK3C2A SNP Missense_Mutation 11 17190547 T A 50 57 BRCA TCGA-BH-A1FD DCHS1 SNP Missense_Mutation 11 6644754 T C 52 90 BRCA TCGA-BH-A1FD RAB30 SNP Silent 11 82708280 G T 39 100 BRCA TCGA-BH-A1FD PTHLH SNP Missense_Mutation 12 28116584 G A 34 78 BRCA TCGA-BH-A1FD TEP1 SNP Missense_Mutation 14 20871899 G A 39 49 BRCA TCGA-BH-A1FD IFT140 SNP Missense_Mutation 16 1621431 A T 13 53 BRCA TCGA-BH-A1FD ANKRD11 SNP Missense_Mutation 16 89345615 C A 30 46 BRCA TCGA-BH-A1FD ZZEF1 SNP Missense_Mutation 17 3992057 C T 25 70 BRCA TCGA-BH-A1FD TP53 SNP Missense_Mutation 17 7578413 C G 17 97 BRCA TCGA-BH-A1FD TMEM37 INS Frame_Shift_Ins 2 120194728 - T 27 38 BRCA TCGA-BH-A1FD TTN SNP Missense_Mutation 2 179545856 A G 4 81 BRCA TCGA-BH-A1FD RASGRP3 SNP Missense_Mutation 2 33749009 T C 50 92 BRCA TCGA-BH-A1FD CYP24A1 SNP Nonsense_Mutation 20 52773723 G A 38 56 BRCA TCGA-BH-A1FD MICAL3 INS Frame_Shift_Ins 22 18305741 - G 55 23 BRCA TCGA-BH-A1FD NDUFA1 SNP Silent 23 119005895 C T 23 42 BRCA TCGA-BH-A1FD LARP7 SNP Missense_Mutation 4 113575296 A T 3 89 BRCA TCGA-BH-A1FD NAA11 SNP Missense_Mutation 4 80246803 C T 19 96 BRCA TCGA-BH-A1FD STK32A SNP Silent 5 146750276 G C 37 27 BRCA TCGA-BH-A1FD PIK3R1 SNP Missense_Mutation 5 67591083 T C 52 91 BRCA TCGA-BH-A1FD RP1 SNP Missense_Mutation 8 55539199 G T 44 87 BRCA TCGA-BH-A1FD CNTRL DEL In_Frame_Del 9 123904505 AGA - 11 78 BRCA TCGA-BH-A1FD SMARCA2 SNP Silent 9 2081840 C A 26 58 BRCA TCGA-BH-A1FD AQP7 INS Frame_Shift_Ins 9 33395131 - CATCTTCCTC 55 50 BRCA TCGA-BH-A1FD FAM22F SNP Missense_Mutation 9 97084511 G A 39 58 BRCA TCGA-BH-A1FE MUC1 SNP Missense_Mutation 1 155160715 T C 60 67 BRCA TCGA-BH-A1FE GON4L SNP Splice_Site 1 155753682 T G 60 44 BRCA TCGA-BH-A1FE LIPF SNP Splice_Site 10 90427444 G T 44 79 BRCA TCGA-BH-A1FE ERBB2 SNP Missense_Mutation 17 37880261 G T 33 98 BRCA TCGA-BH-A1FE TP53 SNP Missense_Mutation 17 7577541 T A 60 86 BRCA TCGA-BH-A1FE RGPD8 SNP Missense_Mutation 2 113147238 A G 15 67 BRCA TCGA-BH-A1FE SPHKAP SNP Missense_Mutation 2 228855865 G T 43 56 BRCA TCGA-BH-A1FE ZBTB33 SNP Missense_Mutation 23 119389142 A C 2 60 BRCA TCGA-BH-A1FE PIK3CA SNP Missense_Mutation 3 178916944 A G 1 89 BRCA TCGA-BH-A1FE TNK2 SNP Missense_Mutation 3 195595043 C T 22 59 BRCA TCGA-BH-A1FE RHAG SNP Silent 6 49582475 G A 36 65 BRCA TCGA-BH-A1FE MUC17 SNP Missense_Mutation 7 100685739 G A 44 47 BRCA TCGA-BH-A1FE CSMD3 SNP Missense_Mutation 8 113299452 C T 31 100 BRCA TCGA-BH-A1FE C9orf66 INS Frame_Shift_Ins 9 214549 - G 59 32 BRCA TCGA-BH-A1FE TLN1 SNP Missense_Mutation 9 35706350 G A 38 77 BRCA TCGA-BH-A1FG WDR47 SNP Missense_Mutation 1 109553818 A C 1 55 BRCA TCGA-BH-A1FG HRNR SNP Missense_Mutation 1 152188847 A G 10 53 BRCA TCGA-BH-A1FG TNFSF4 SNP Missense_Mutation 1 173155705 C T 23 76 BRCA TCGA-BH-A1FG CYP4A22 SNP Missense_Mutation 1 47610609 G A 40 41 BRCA TCGA-BH-A1FG AKR1C4 SNP Missense_Mutation 10 5254676 G A 37 59 BRCA TCGA-BH-A1FG RASAL1 SNP Splice_site 12 113553739 C A 24 79 BRCA TCGA-BH-A1FG RPLP0 SNP Missense_Mutation 12 120635133 C T 25 77 BRCA TCGA-BH-A1FG NBEA SNP Silent 13 35785239 G C 45 55 BRCA TCGA-BH-A1FG KIAA0100 SNP Silent 17 26970251 G A 33 60 BRCA TCGA-BH-A1FG USP32 SNP Missense_Mutation 17 58257912 G C 34 77 BRCA TCGA-BH-A1FG LILRA4 SNP Missense_Mutation 19 54849483 C T 27 51 BRCA TCGA-BH-A1FG TRIP12 DEL Frame_Shift_Del 2 230663600 GA - 41 98 BRCA TCGA-BH-A1FG TMEM214 SNP Missense_Mutation 2 27262671 G A 46 49 BRCA TCGA-BH-A1FG WDR54 SNP Silent 2 74652076 A G 8 46 BRCA TCGA-BH-A1FG RAB40A SNP Missense_Mutation 23 102755501 G A 38 58 BRCA TCGA-BH-A1FG MAMLD1 SNP Splice_Site 23 149613879 G A 44 56 BRCA TCGA-BH-A1FG YIPF6 SNP Silent 23 67741223 A G 1 48 BRCA TCGA-BH-A1FG PCDHGA3 SNP Silent 5 140725274 C T 19 45 BRCA TCGA-BH-A1FG MAP3K1 DEL Frame_Shift_Del 5 56171109 CTGTCTA - 24 94 BRCA TCGA-BH-A1FG GPR98 SNP Missense_Mutation 5 89986809 A T 5 73 BRCA TCGA-BH-A1FG KHDC3L SNP Silent 6 74072569 G T 45 49 BRCA TCGA-BH-A1FG PPP2R2A SNP Missense_Mutation 8 26227655 T A 58 89 BRCA TCGA-BH-A1FH GATA3 INS Frame_Shift_Ins 10 8115843 - C 54 61 BRCA TCGA-BH-A1FH PSG7 SNP Silent 19 43433645 G A 40 33 BRCA TCGA-BH-A1FH BTBD3 SNP Silent 20 11904305 C T 32 64 BRCA TCGA-BH-A1FH PLCB4 SNP Silent 20 9353021 G A 41 54 BRCA TCGA-BH-A1FH MXRA5 SNP Missense_Mutation 23 3228346 A C 6 72 BRCA TCGA-BH-A1FH NSUN5 SNP Missense_Mutation 7 72719078 C T 28 50 BRCA TCGA-BH-A1FJ RPTN SNP Missense_Mutation 1 152127447 C T 22 52 BRCA TCGA-BH-A1FJ RGS16 SNP Missense_Mutation 1 182569531 G A 43 99 BRCA TCGA-BH-A1FJ LRRIQ3 SNP Splice_site 1 74621549 C T 30 64 BRCA TCGA-BH-A1FJ XPNPEP1 SNP Silent 10 111640657 G A 33 53 BRCA TCGA-BH-A1FJ MUC15 SNP Silent 11 26586728 C T 19 35 BRCA TCGA-BH-A1FJ SYT9 SNP Silent 11 7324487 C T 24 65 BRCA TCGA-BH-A1FJ CDKN1B INS Frame_Shift_Ins 12 12870935 - GC 35 54 BRCA TCGA-BH-A1FJ ACSS3 SNP Missense_Mutation 12 81627233 G T 46 61 BRCA TCGA-BH-A1FJ ZSCAN29 SNP Missense_Mutation 15 43658586 C T 26 78 BRCA TCGA-BH-A1FJ DNAH3 SNP Missense_Mutation 16 21147728 G A 40 49 BRCA TCGA-BH-A1FJ CDK12 SNP Missense_Mutation 17 37618580 G A 45 65 BRCA TCGA-BH-A1FJ MPO SNP Silent 17 56356745 G A 34 63 BRCA TCGA-BH-A1FJ GADD45GIP1 SNP Missense_Mutation 19 13067699 C T 31 52 BRCA TCGA-BH-A1FJ PSG7 SNP Silent 19 43430738 G T 41 58 BRCA TCGA-BH-A1FJ AP2A1 SNP Missense_Mutation 19 50302103 G T 48 75 BRCA TCGA-BH-A1FJ SAFB SNP Silent 19 5641894 G A 39 46 BRCA TCGA-BH-A1FJ FUT6 SNP Nonsense_Mutation 19 5832191 G A 38 53 BRCA TCGA-BH-A1FJ MUC16 SNP Missense_Mutation 19 9000557 G A 35 51 BRCA TCGA-BH-A1FJ BIRC6 DEL In_Frame_Del 2 32640667 AAT - 1 90 BRCA TCGA-BH-A1FJ SLC25A14 SNP Missense_Mutation 23 129474313 G A 40 69 BRCA TCGA-BH-A1FJ SPRY3 SNP Missense_Mutation 23 155003723 C T 23 56 BRCA TCGA-BH-A1FJ KIAA1257 SNP Silent 3 128706484 G A 40 31 BRCA TCGA-BH-A1FJ GNAI2 SNP Missense_Mutation 3 50289959 C T 22 50 BRCA TCGA-BH-A1FJ DNAH12 SNP Silent 3 57443861 G A 40 53 BRCA TCGA-BH-A1FJ CADM2 SNP Missense_Mutation 3 86115884 C A 28 100 BRCA TCGA-BH-A1FJ TTC23L SNP Missense_Mutation 5 34863073 G A 37 48 BRCA TCGA-BH-A1FJ UGT3A1 SNP Missense_Mutation 5 35954396 C T 22 66 BRCA TCGA-BH-A1FJ DST SNP Missense_Mutation 6 56333793 A T 9 66 BRCA TCGA-BH-A1FJ CNTNAP2 SNP Missense_Mutation 7 147183037 A C 5 78 BRCA TCGA-BH-A1FJ ARHGAP39 SNP Silent 8 145772934 G A 42 64 BRCA TCGA-BH-A1FJ CA1 SNP Missense_Mutation 8 86242048 A C 1 74 BRCA TCGA-BH-A1FL CASZ1 SNP Missense_Mutation 1 10714015 G A 37 100 BRCA TCGA-BH-A1FL GON4L SNP Missense_Mutation 1 155734834 G A 45 99 BRCA TCGA-BH-A1FL NPAT SNP Silent 11 108032567 C T 32 52 BRCA TCGA-BH-A1FL BCL9L SNP Missense_Mutation 11 118779066 C T 22 74 BRCA TCGA-BH-A1FL EML3 SNP Missense_Mutation 11 62378386 G A 39 28 BRCA TCGA-BH-A1FL INO80 SNP Missense_Mutation 15 41388029 G A 34 81 BRCA TCGA-BH-A1FL CDH8 SNP Silent 16 62055218 A G 11 70 BRCA TCGA-BH-A1FL CBFB SNP Missense_Mutation 16 67100608 T G 62 60 BRCA TCGA-BH-A1FL SERPINF2 SNP Missense_Mutation 17 1650702 T C 50 83 BRCA TCGA-BH-A1FL IKZF3 SNP Missense_Mutation 17 37988354 C A 27 53 BRCA TCGA-BH-A1FL SPPL2C SNP Silent 17 43922347 C T 27 46 BRCA TCGA-BH-A1FL LAMA1 SNP Silent 18 6961630 G A 37 49 BRCA TCGA-BH-A1FL CERS1 SNP Silent 19 18994907 G A 35 57 BRCA TCGA-BH-A1FL MEF2B SNP Missense_Mutation 19 19257410 G A 39 2 BRCA TCGA-BH-A1FL C2orf18 SNP Missense_Mutation 2 26997949 C T 28 61 BRCA TCGA-BH-A1FL PPP3R1 SNP Missense_Mutation 2 68413703 C T 22 100 BRCA TCGA-BH-A1FL ADNP INS Frame_Shift_Ins 20 49509507 - GTAA 47 98 BRCA TCGA-BH-A1FL MAGEA4 SNP Missense_Mutation 23 151092941 C T 27 39 BRCA TCGA-BH-A1FL DMD SNP Missense_Mutation 23 31200940 C T 19 98 BRCA TCGA-BH-A1FL TBL1XR1 INS Frame_Shift_Ins 3 176769295 - TA 28 81 BRCA TCGA-BH-A1FL MUC4 SNP Missense_Mutation 3 195506453 G A 43 47 BRCA TCGA-BH-A1FL SETD5 SNP Missense_Mutation 3 9495453 A G 12 83 BRCA TCGA-BH-A1FL HIST1H2AM SNP Nonsense_Mutation 6 27860804 C A 29 62 BRCA TCGA-BH-A1FL TNXB SNP Missense_Mutation 6 32024600 T C 51 63 BRCA TCGA-BH-A1FL UNC5CL SNP Missense_Mutation 6 40996170 C T 26 46 BRCA TCGA-BH-A1FL KCNQ5 SNP Missense_Mutation 6 73787578 T C 62 73 BRCA TCGA-BH-A1FM OR6K2 SNP Missense_Mutation 1 158669983 T C 59 52 BRCA TCGA-BH-A1FM NID1 SNP Missense_Mutation 1 236143802 C T 30 100 BRCA TCGA-BH-A1FM ABCA4 SNP Missense_Mutation 1 94520718 C A 29 100 BRCA TCGA-BH-A1FM ANKRD30A SNP Nonsense_Mutation 10 37508553 G T 37 54 BRCA TCGA-BH-A1FM CCAR1 SNP Nonsense_Mutation 10 70507134 C T 29 97 BRCA TCGA-BH-A1FM EED SNP Missense_Mutation 11 85966327 G A 45 94 BRCA TCGA-BH-A1FM RAB38 SNP Silent 11 87908404 A T 6 91 BRCA TCGA-BH-A1FM MMAB SNP Silent 12 109998898 C T 32 66 BRCA TCGA-BH-A1FM STAT2 SNP Missense_Mutation 12 56737619 C A 28 46 BRCA TCGA-BH-A1FM FAM123A SNP Silent 13 25743949 C T 29 51 BRCA TCGA-BH-A1FM MLNR SNP Silent 13 49796405 G A 37 47 BRCA TCGA-BH-A1FM LMO7 SNP Missense_Mutation 13 76395433 T A 59 58 BRCA TCGA-BH-A1FM RTL1 SNP Silent 14 101347322 T G 59 45 BRCA TCGA-BH-A1FM RPS6KA5 SNP Missense_Mutation 14 91356949 G A 47 100 BRCA TCGA-BH-A1FM ZNF598 SNP Missense_Mutation 16 2048316 C T 31 91 BRCA TCGA-BH-A1FM KCNG4 SNP Missense_Mutation 16 84270709 G A 38 66 BRCA TCGA-BH-A1FM ELAC2 SNP Missense_Mutation 17 12897815 C T 32 62 BRCA TCGA-BH-A1FM ACBD4 SNP Missense_Mutation 17 43213950 C T 23 51 BRCA TCGA-BH-A1FM CHRNB1 SNP Silent 17 7350401 C T 31 48 BRCA TCGA-BH-A1FM ZNF700 SNP Missense_Mutation 19 12060223 C G 31 52 BRCA TCGA-BH-A1FM CACNA1A SNP Missense_Mutation 19 13565940 G T 44 97 BRCA TCGA-BH-A1FM RYR1 SNP Silent 19 39075687 C T 31 50 BRCA TCGA-BH-A1FM NLRP5 SNP Silent 19 56515226 C G 32 53 BRCA TCGA-BH-A1FM CD28 SNP Missense_Mutation 2 204599579 C T 23 66 BRCA TCGA-BH-A1FM FEZ2 SNP Silent 2 36810595 G C 33 51 BRCA TCGA-BH-A1FM PLXNB2 SNP Missense_Mutation 22 50719361 C T 31 96 BRCA TCGA-BH-A1FM ATP2B3 SNP Missense_Mutation 23 152807837 G A 37 96 BRCA TCGA-BH-A1FM DCAF8L1 SNP Missense_Mutation 23 27997704 G T 44 51 BRCA TCGA-BH-A1FM HUWE1 SNP Missense_Mutation 23 53588774 G A 38 80 BRCA TCGA-BH-A1FM ITIH6 SNP Missense_Mutation 23 54817311 G A 47 54 BRCA TCGA-BH-A1FM TNIK SNP Silent 3 170784390 T C 52 65 BRCA TCGA-BH-A1FM FOXP1 SNP Silent 3 71161786 T C 59 38 BRCA TCGA-BH-A1FM FAT4 SNP Missense_Mutation 4 126328230 A C 9 92 BRCA TCGA-BH-A1FM GLRA3 SNP Splice_Site 4 175709965 A C 14 88 BRCA TCGA-BH-A1FM KCTD8 INS Frame_Shift_Ins 4 44177076 - A 61 68 BRCA TCGA-BH-A1FM SLC2A9 DEL Frame_Shift_Del 4 9836533 GCAAAGTTGGAGAG - 34 62 BRCA TCGA-BH-A1FM PCDHA1 SNP Missense_Mutation 5 140167416 G T 34 59 BRCA TCGA-BH-A1FM KIF4B SNP Missense_Mutation 5 154395548 C T 26 68 BRCA TCGA-BH-A1FM HEATR7B2 SNP Missense_Mutation 5 41049479 C A 28 39 BRCA TCGA-BH-A1FM F2R SNP Missense_Mutation 5 76028288 C G 32 51 BRCA TCGA-BH-A1FM ARSK SNP Missense_Mutation 5 94936385 G A 47 55 BRCA TCGA-BH-A1FM EYS SNP Silent 6 65767562 G T 47 49 BRCA TCGA-BH-A1FM HECW1 SNP Missense_Mutation 7 43506115 C T 27 84 BRCA TCGA-BH-A1FM SEPT14 SNP Missense_Mutation 7 55914275 C T 17 90 BRCA TCGA-BH-A1FM SEMA3C DEL In_Frame_Del 7 80418832 CTC - 28 88 BRCA TCGA-BH-A1FM ZNF804B SNP Missense_Mutation 7 88956679 C T 19 61 BRCA TCGA-BH-A1FM ADAM18 SNP Silent 8 39495190 C T 30 51 BRCA TCGA-BH-A1FM OR13C8 SNP Missense_Mutation 9 107332253 G C 45 56 BRCA TCGA-BH-A1FM SEC16A SNP Missense_Mutation 9 139368956 C G 29 66 BRCA TCGA-BH-A1FM SEC16A SNP Missense_Mutation 9 139369265 C G 32 50 BRCA TCGA-BH-A1FM SEC16A SNP Missense_Mutation 9 139369436 C T 29 84 BRCA TCGA-BH-A1FM IFNA6 SNP Missense_Mutation 9 21350623 G C 45 56 BRCA TCGA-BH-A1FN MAB21L3 SNP Missense_Mutation 1 116666885 G C 33 71 BRCA TCGA-BH-A1FN FLG2 SNP Missense_Mutation 1 152326689 A T 2 44 BRCA TCGA-BH-A1FN FCER1A SNP Splice_Site 1 159275777 G A 33 73 BRCA TCGA-BH-A1FN XCL1 SNP Missense_Mutation 1 168549314 A C 3 59 BRCA TCGA-BH-A1FN FMO1 SNP Missense_Mutation 1 171254413 C G 29 52 BRCA TCGA-BH-A1FN SHCBP1L SNP Silent 1 182908337 C G 29 60 BRCA TCGA-BH-A1FN HMCN1 SNP Missense_Mutation 1 186114610 A T 14 79 BRCA TCGA-BH-A1FN F13B SNP Missense_Mutation 1 197031086 C A 28 59 BRCA TCGA-BH-A1FN ASPM SNP Missense_Mutation 1 197086988 C G 32 54 BRCA TCGA-BH-A1FN PGBD5 SNP Silent 1 230459309 G A 45 88 BRCA TCGA-BH-A1FN CSMD2 SNP Missense_Mutation 1 33999492 G A 35 71 BRCA TCGA-BH-A1FN MACF1 SNP Missense_Mutation 1 39895636 G C 45 88 BRCA TCGA-BH-A1FN IPP SNP Missense_Mutation 1 46206927 G A 45 49 BRCA TCGA-BH-A1FN PDE4B SNP Missense_Mutation 1 66384309 G C 45 64 BRCA TCGA-BH-A1FN ADAM12 SNP Missense_Mutation 10 127789701 A G 7 92 BRCA TCGA-BH-A1FN PDSS1 SNP Missense_Mutation 10 27024211 G A 38 100 BRCA TCGA-BH-A1FN KIF5B DEL In_Frame_Del 10 32337446 ACTGGA - 10 65 BRCA TCGA-BH-A1FN USP54 SNP Silent 10 75258420 G A 45 53 BRCA TCGA-BH-A1FN PTEN DEL Splice_Site 10 89692976 TTCTATGGGGAAGTAAGGACCAGAGACAAAAAGGTAAG - 64 88 BRCA TCGA-BH-A1FN PPP1R3C DEL Frame_Shift_Del 10 93390161 CAGA - 21 67 BRCA TCGA-BH-A1FN RASSF7 SNP Silent 11 563350 G A 45 41 BRCA TCGA-BH-A1FN SLC43A1 SNP Missense_Mutation 11 57265233 C A 30 69 BRCA TCGA-BH-A1FN OR52B2 SNP Silent 11 6191248 G A 34 52 BRCA TCGA-BH-A1FN NUDT22 SNP Silent 11 63995111 C T 21 61 BRCA TCGA-BH-A1FN NRXN2 SNP Missense_Mutation 11 64435963 G T 44 66 BRCA TCGA-BH-A1FN LRRK2 SNP Missense_Mutation 12 40681167 C A 20 57 BRCA TCGA-BH-A1FN APOF SNP Missense_Mutation 12 56755197 C G 32 58 BRCA TCGA-BH-A1FN SLC2A3 SNP Missense_Mutation 12 8078450 G A 36 87 BRCA TCGA-BH-A1FN PTPRQ SNP Missense_Mutation 12 81004320 A G 12 53 BRCA TCGA-BH-A1FN A2M SNP Nonsense_Mutation 12 9254262 G T 48 69 BRCA TCGA-BH-A1FN GRK1 SNP Missense_Mutation 13 114321853 G A 38 67 BRCA TCGA-BH-A1FN RB1 SNP Nonsense_Mutation 13 48916747 C T 29 77 BRCA TCGA-BH-A1FN DIS3 SNP Missense_Mutation 13 73345227 G C 40 47 BRCA TCGA-BH-A1FN FSCB SNP Silent 14 44973863 A C 5 58 BRCA TCGA-BH-A1FN C15orf55 SNP Missense_Mutation 15 34648639 G C 33 47 BRCA TCGA-BH-A1FN RAD51 SNP Missense_Mutation 15 40998407 C A 29 60 BRCA TCGA-BH-A1FN TGM7 SNP Silent 15 43569149 G C 45 73 BRCA TCGA-BH-A1FN ZSCAN29 SNP Missense_Mutation 15 43661287 C A 32 77 BRCA TCGA-BH-A1FN KIAA0556 SNP Missense_Mutation 16 27761615 A T 2 91 BRCA TCGA-BH-A1FN ZNF48 SNP Silent 16 30408955 G A 45 59 BRCA TCGA-BH-A1FN ZNF629 SNP Silent 16 30794530 C T 19 48 BRCA TCGA-BH-A1FN KIFC3 INS Frame_Shift_Ins 16 57803851 - A 45 72 BRCA TCGA-BH-A1FN CLEC18B SNP Missense_Mutation 16 74446736 C T 30 77 BRCA TCGA-BH-A1FN NBR1 SNP Nonsense_Mutation 17 41349048 G T 45 83 BRCA TCGA-BH-A1FN EFCAB13 SNP Missense_Mutation 17 45421643 C G 32 67 BRCA TCGA-BH-A1FN SGCA SNP Silent 17 48247653 G A 47 53 BRCA TCGA-BH-A1FN KIAA0195 SNP Missense_Mutation 17 73484883 C A 22 96 BRCA TCGA-BH-A1FN RNF157 SNP Splice_site 17 74208563 C T 30 100 BRCA TCGA-BH-A1FN TP53 SNP Missense_Mutation 17 7577099 C G 32 95 BRCA TCGA-BH-A1FN DUS1L SNP Missense_Mutation 17 80018821 C T 30 61 BRCA TCGA-BH-A1FN ZBTB7C SNP Missense_Mutation 18 45566931 A G 12 65 BRCA TCGA-BH-A1FN PRKCSH SNP Missense_Mutation 19 11557971 C T 30 64 BRCA TCGA-BH-A1FN ZNF682 SNP Missense_Mutation 19 20135146 G C 33 31 BRCA TCGA-BH-A1FN ZNF91 SNP Missense_Mutation 19 23542876 C T 29 47 BRCA TCGA-BH-A1FN CHST8 SNP Silent 19 34180251 C T 29 50 BRCA TCGA-BH-A1FN NPHS1 SNP Silent 19 36332657 G T 43 71 BRCA TCGA-BH-A1FN SPTBN4 SNP Missense_Mutation 19 41066253 C A 18 66 BRCA TCGA-BH-A1FN ZNF541 SNP Missense_Mutation 19 48052598 C T 28 80 BRCA TCGA-BH-A1FN SYT3 SNP Nonsense_Mutation 19 51135658 C A 29 69 BRCA TCGA-BH-A1FN MTX2 SNP Splice_Site 2 177188193 G A 44 83 BRCA TCGA-BH-A1FN TTN SNP Missense_Mutation 2 179584070 A G 2 94 BRCA TCGA-BH-A1FN DNAH7 SNP Missense_Mutation 2 196619103 C T 29 100 BRCA TCGA-BH-A1FN CRYGC SNP Silent 2 208994511 C T 30 53 BRCA TCGA-BH-A1FN LRRFIP1 SNP Silent 2 238672126 T C 51 36 BRCA TCGA-BH-A1FN SULT6B1 SNP Missense_Mutation 2 37415655 T A 64 49 BRCA TCGA-BH-A1FN ATP6V1B1 SNP Splice_Site 2 71191567 G C 33 77 BRCA TCGA-BH-A1FN POLR1A SNP Silent 2 86308729 G A 35 46 BRCA TCGA-BH-A1FN CPSF3 SNP Missense_Mutation 2 9613060 G C 33 76 BRCA TCGA-BH-A1FN RRBP1 SNP Missense_Mutation 20 17640650 G T 42 92 BRCA TCGA-BH-A1FN CHD6 SNP Silent 20 40043946 G C 45 66 BRCA TCGA-BH-A1FN CDH22 SNP Silent 20 44869708 C T 21 69 BRCA TCGA-BH-A1FN ZNF831 SNP Silent 20 57768189 T G 55 27 BRCA TCGA-BH-A1FN PWP2 SNP Missense_Mutation 21 45542081 G C 45 78 BRCA TCGA-BH-A1FN ARVCF SNP Missense_Mutation 22 19966462 G T 42 94 BRCA TCGA-BH-A1FN CHKB SNP Nonsense_Mutation 22 51019010 C A 29 71 BRCA TCGA-BH-A1FN DOCK11 SNP Splice_Site 23 117722098 A T 15 87 BRCA TCGA-BH-A1FN DMD SNP Missense_Mutation 23 32380914 C G 32 60 BRCA TCGA-BH-A1FN ARR3 DEL Frame_Shift_Del 23 69496109 AT - 4 83 BRCA TCGA-BH-A1FN ARR3 DEL Frame_Shift_Del 23 69496112 CCTACCCCTT - 26 67 BRCA TCGA-BH-A1FN ALDH1L1 SNP Silent 3 125855661 G A 37 51 BRCA TCGA-BH-A1FN CEP63 SNP Missense_Mutation 3 134264532 C G 32 57 BRCA TCGA-BH-A1FN CADPS SNP Missense_Mutation 3 62648054 C T 29 95 BRCA TCGA-BH-A1FN LRIT3 SNP Missense_Mutation 4 110791367 G C 33 64 BRCA TCGA-BH-A1FN ANK2 SNP Silent 4 114177049 C G 30 48 BRCA TCGA-BH-A1FN FHDC1 SNP Missense_Mutation 4 153875460 G C 33 74 BRCA TCGA-BH-A1FN EVC2 SNP Missense_Mutation 4 5627522 A G 11 78 BRCA TCGA-BH-A1FN MAN2B2 SNP Missense_Mutation 4 6612888 G C 36 49 BRCA TCGA-BH-A1FN DSPP SNP Missense_Mutation 4 88534180 A G 11 58 BRCA TCGA-BH-A1FN GRID2 SNP Missense_Mutation 4 94159585 C T 21 69 BRCA TCGA-BH-A1FN IRF1 SNP Missense_Mutation 5 131822339 G A 36 63 BRCA TCGA-BH-A1FN MYO10 SNP Missense_Mutation 5 16877797 C G 32 53 BRCA TCGA-BH-A1FN STK10 SNP Missense_Mutation 5 171517330 G A 40 59 BRCA TCGA-BH-A1FN ADAMTS2 SNP Missense_Mutation 5 178549700 G C 33 56 BRCA TCGA-BH-A1FN NADKD1 SNP Missense_Mutation 5 36195293 T G 50 62 BRCA TCGA-BH-A1FN NIPBL SNP Missense_Mutation 5 36976318 T G 64 69 BRCA TCGA-BH-A1FN L3MBTL3 SNP Missense_Mutation 6 130374131 G C 45 80 BRCA TCGA-BH-A1FN VNN2 SNP Missense_Mutation 6 133078597 G A 47 85 BRCA TCGA-BH-A1FN KIAA1244 SNP Missense_Mutation 6 138582743 C T 29 85 BRCA TCGA-BH-A1FN COL21A1 DEL Frame_Shift_Del 6 56044762 GGGTAGTCACTATATTGAAC - 35 85 BRCA TCGA-BH-A1FN UFSP1 SNP Missense_Mutation 7 100486535 C G 29 57 BRCA TCGA-BH-A1FN MUC12 SNP Missense_Mutation 7 100635040 C T 29 58 BRCA TCGA-BH-A1FN GPR22 SNP Silent 7 107114853 T C 60 66 BRCA TCGA-BH-A1FN DGKI SNP Missense_Mutation 7 137206651 C T 29 94 BRCA TCGA-BH-A1FN KIAA1549 SNP Silent 7 138601660 G A 39 43 BRCA TCGA-BH-A1FN TNS3 SNP Silent 7 47440386 G A 46 71 BRCA TCGA-BH-A1FN PKD1L1 SNP Missense_Mutation 7 47835714 C G 32 64 BRCA TCGA-BH-A1FN ASL SNP Silent 7 65546942 C T 29 51 BRCA TCGA-BH-A1FN CROT SNP Silent 7 87011255 G A 45 48 BRCA TCGA-BH-A1FN ENPP2 SNP Missense_Mutation 8 120602841 C G 29 97 BRCA TCGA-BH-A1FN CPQ SNP Missense_Mutation 8 98155289 C G 21 94 BRCA TCGA-BH-A1FN BAAT SNP Silent 9 104125001 G A 45 52 BRCA TCGA-BH-A1FN IKBKAP SNP Silent 9 111674596 C G 30 60 BRCA TCGA-BH-A1FN DFNB31 SNP Silent 9 117168684 G A 39 41 BRCA TCGA-BH-A1FN SETX SNP Missense_Mutation 9 135205210 A C 4 79 BRCA TCGA-BH-A1FN DENND4C SNP Splice_site 9 19331976 G A 41 98 BRCA TCGA-BH-A1FR PRAMEF10 SNP Missense_Mutation 1 12954921 A G 10 31 BRCA TCGA-BH-A1FR MYOM3 SNP Silent 1 24388443 T C 55 29 BRCA TCGA-BH-A1FR EP400NL SNP Missense_Mutation 12 132593193 C G 32 88 BRCA TCGA-BH-A1FR VWF SNP Missense_Mutation 12 6167090 C T 27 50 BRCA TCGA-BH-A1FR POSTN SNP Missense_Mutation 13 38154780 C T 23 73 BRCA TCGA-BH-A1FR GOLGA6L2 SNP Missense_Mutation 15 23685200 C T 24 54 BRCA TCGA-BH-A1FR GLCE SNP Splice_site 15 69553426 G T 44 99 BRCA TCGA-BH-A1FR SOLH SNP Missense_Mutation 16 602903 G T 47 99 BRCA TCGA-BH-A1FR CCL3L1 SNP Missense_Mutation 17 34624285 C T 19 48 BRCA TCGA-BH-A1FR STAC2 SNP Missense_Mutation 17 37374353 C T 27 85 BRCA TCGA-BH-A1FR LLGL2 SNP Missense_Mutation 17 73566281 A C 6 91 BRCA TCGA-BH-A1FR ZNF24 SNP Missense_Mutation 18 32919834 A C 11 72 BRCA TCGA-BH-A1FR HIPK4 SNP Silent 19 40889792 G A 40 37 BRCA TCGA-BH-A1FR SULT1C2 SNP Missense_Mutation 2 108921678 G A 33 65 BRCA TCGA-BH-A1FR IDH1 SNP Missense_Mutation 2 209113113 G A 37 82 BRCA TCGA-BH-A1FR SSTR3 SNP Missense_Mutation 22 37603605 T A 63 79 BRCA TCGA-BH-A1FR DCAF12L2 SNP Missense_Mutation 23 125298568 C G 22 86 BRCA TCGA-BH-A1FR VPS52 SNP Missense_Mutation 6 33231274 T C 52 64 BRCA TCGA-BH-A1FR SPAG11A SNP Nonsense_Mutation 8 7718209 C T 25 54 BRCA TCGA-BH-A1FU MRPL20 SNP Missense_Mutation 1 1337496 T G 56 45 BRCA TCGA-BH-A1FU SPTA1 SNP Missense_Mutation 1 158637768 T G 51 50 BRCA TCGA-BH-A1FU F11R SNP Missense_Mutation 1 160969973 T C 60 77 BRCA TCGA-BH-A1FU FAM5B SNP Missense_Mutation 1 177250489 G A 39 98 BRCA TCGA-BH-A1FU SERTAD4 SNP Missense_Mutation 1 210415429 T C 56 56 BRCA TCGA-BH-A1FU THRAP3 SNP Missense_Mutation 1 36751975 G C 44 81 BRCA TCGA-BH-A1FU FIBIN SNP Silent 11 27016367 G T 47 60 BRCA TCGA-BH-A1FU NT5DC3 SNP Missense_Mutation 12 104208797 T A 50 91 BRCA TCGA-BH-A1FU CNPY2 SNP Missense_Mutation 12 56705098 C T 27 83 BRCA TCGA-BH-A1FU SLC25A30 SNP Silent 13 45983070 G A 33 55 BRCA TCGA-BH-A1FU TEP1 SNP Missense_Mutation 14 20871929 G A 37 73 BRCA TCGA-BH-A1FU HIRIP3 SNP Missense_Mutation 16 30005704 C A 24 52 BRCA TCGA-BH-A1FU GRIN2C SNP Silent 17 72850911 G A 41 56 BRCA TCGA-BH-A1FU TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-BH-A1FU KRI1 INS Frame_Shift_Ins 19 10676487 - C 46 26 BRCA TCGA-BH-A1FU TIMM50 SNP Splice_site 19 39973556 G A 35 68 BRCA TCGA-BH-A1FU CGB SNP Silent 19 49526242 G C 43 70 BRCA TCGA-BH-A1FU HECW2 SNP Missense_Mutation 2 197105255 C A 32 98 BRCA TCGA-BH-A1FU BRWD1 SNP Missense_Mutation 21 40568382 G C 45 86 BRCA TCGA-BH-A1FU EOMES SNP Missense_Mutation 3 27760081 T C 50 90 BRCA TCGA-BH-A1FU FNIP1 SNP Missense_Mutation 5 130857147 G C 33 99 BRCA TCGA-BH-A1FU PCDHGB4 SNP Silent 5 140769344 C T 27 44 BRCA TCGA-BH-A1FU DNAH8 SNP Nonsense_Mutation 6 38816466 T A 49 55 BRCA TCGA-BH-A1FU KLHL7 SNP Missense_Mutation 7 23207557 A G 9 90 BRCA TCGA-BH-A1FU BAZ1B INS Frame_Shift_Ins 7 72856553 - T 20 53 BRCA TCGA-BH-A1FU RAD54B SNP Missense_Mutation 8 95403934 C T 25 100 BRCA TCGA-BH-A1FU PTBP3 SNP Missense_Mutation 9 114997150 T A 49 84 BRCA TCGA-BH-A201 TNFRSF9 SNP Missense_Mutation 1 7980932 C T 31 67 BRCA TCGA-BH-A201 DDX21 SNP Missense_Mutation 10 70737326 A G 1 60 BRCA TCGA-BH-A201 SIK3 SNP Splice_Site 11 116766967 A G 14 87 BRCA TCGA-BH-A201 DDX11L8 SNP Silent 12 92915 C G 17 76 BRCA TCGA-BH-A201 TARSL2 SNP Missense_Mutation 15 102263346 C T 32 67 BRCA TCGA-BH-A201 KIAA0430 SNP Missense_Mutation 16 15702158 T C 51 90 BRCA TCGA-BH-A201 RALBP1 SNP Silent 18 9524597 C T 25 56 BRCA TCGA-BH-A201 NUP35 SNP Missense_Mutation 2 184023015 C A 32 100 BRCA TCGA-BH-A201 SF3B1 SNP Missense_Mutation 2 198266834 T C 62 93 BRCA TCGA-BH-A201 GPR55 SNP Missense_Mutation 2 231775625 A G 7 68 BRCA TCGA-BH-A201 XDH SNP Missense_Mutation 2 31588379 G A 39 77 BRCA TCGA-BH-A201 DPM1 SNP Missense_Mutation 20 49575041 C T 20 53 BRCA TCGA-BH-A201 ODZ1 SNP Silent 23 123514548 C G 30 37 BRCA TCGA-BH-A201 PDZD4 SNP Missense_Mutation 23 153073934 G C 48 51 BRCA TCGA-BH-A201 PRKX SNP Missense_Mutation 23 3544506 G T 33 69 BRCA TCGA-BH-A201 ARHGEF9 SNP Missense_Mutation 23 62875545 C T 29 77 BRCA TCGA-BH-A201 PDGFRB SNP Missense_Mutation 5 149513212 A G 7 88 BRCA TCGA-BH-A201 C5orf27 SNP Missense_Mutation 5 95194554 T A 55 27 BRCA TCGA-BH-A201 PCOLCE SNP Silent 7 100205270 G A 37 42 BRCA TCGA-BH-A201 LAMC3 SNP Missense_Mutation 9 133917083 G A 46 96 BRCA TCGA-BH-A202 MOV10 SNP Missense_Mutation 1 113231673 T G 59 50 BRCA TCGA-BH-A202 SMG5 SNP Missense_Mutation 1 156237972 C T 17 67 BRCA TCGA-BH-A202 USH2A SNP Missense_Mutation 1 216219877 G T 41 50 BRCA TCGA-BH-A202 GDF2 SNP Missense_Mutation 10 48413719 C A 20 55 BRCA TCGA-BH-A202 POLA2 SNP Silent 11 65064614 G A 45 63 BRCA TCGA-BH-A202 RPS6KB2 SNP Missense_Mutation 11 67202569 G A 38 68 BRCA TCGA-BH-A202 RFX4 SNP Missense_Mutation 12 107080750 A C 10 63 BRCA TCGA-BH-A202 MON2 SNP Missense_Mutation 12 62965209 C G 24 100 BRCA TCGA-BH-A202 RB1 SNP Nonsense_Mutation 13 48934189 C A 29 83 BRCA TCGA-BH-A202 MAPK6 SNP Missense_Mutation 15 52350913 G C 40 100 BRCA TCGA-BH-A202 PLLP DEL In_Frame_Del 16 57290919 ATC - 12 85 BRCA TCGA-BH-A202 CES2 SNP Missense_Mutation 16 66974233 C T 23 63 BRCA TCGA-BH-A202 TP53 SNP Nonsense_Mutation 17 7578212 G A 37 66 BRCA TCGA-BH-A202 ZNF224 SNP Missense_Mutation 19 44612139 C T 29 50 BRCA TCGA-BH-A202 RUNX1 INS Frame_Shift_Ins 21 36206776 - G 59 66 BRCA TCGA-BH-A202 PPM1F SNP Missense_Mutation 22 22277563 C T 23 40 BRCA TCGA-BH-A202 OFD1 SNP Missense_Mutation 23 13781897 G T 42 56 BRCA TCGA-BH-A202 PRICKLE3 DEL Frame_Shift_Del 23 49040116 GT - 36 69 BRCA TCGA-BH-A202 PLXNA1 SNP Missense_Mutation 3 126730837 G A 40 63 BRCA TCGA-BH-A202 DNAJC13 SNP Missense_Mutation 3 132166751 A G 2 78 BRCA TCGA-BH-A202 PIK3CA SNP Missense_Mutation 3 178922325 A T 9 89 BRCA TCGA-BH-A202 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A202 SYNPR SNP Silent 3 63594947 C T 25 66 BRCA TCGA-BH-A202 PPIL4 SNP Missense_Mutation 6 149847870 C T 17 99 BRCA TCGA-BH-A202 ATXN1 SNP Missense_Mutation 6 16327705 G C 48 71 BRCA TCGA-BH-A202 TAS2R38 SNP Silent 7 141673070 G T 33 33 BRCA TCGA-BH-A202 EPPK1 SNP Silent 8 144945136 G A 40 48 BRCA TCGA-BH-A202 MSR1 SNP Missense_Mutation 8 16035439 G T 33 77 BRCA TCGA-BH-A203 KCNH1 SNP Splice_site 1 210948691 C A 24 100 BRCA TCGA-BH-A203 HSPG2 SNP Silent 1 22174305 G A 37 48 BRCA TCGA-BH-A203 GRHL3 SNP Missense_Mutation 1 24668645 C T 29 100 BRCA TCGA-BH-A203 OR11L1 SNP Missense_Mutation 1 248004332 G C 33 53 BRCA TCGA-BH-A203 OR11L1 SNP Silent 1 248004656 G A 41 55 BRCA TCGA-BH-A203 OR11L1 SNP Missense_Mutation 1 248004829 G C 35 55 BRCA TCGA-BH-A203 OR2L5 SNP Missense_Mutation 1 248185954 G T 35 48 BRCA TCGA-BH-A203 LDB1 SNP Silent 10 103867910 G A 46 100 BRCA TCGA-BH-A203 CTBP2 SNP Silent 10 126683158 G A 43 57 BRCA TCGA-BH-A203 ARHGAP21 SNP Missense_Mutation 10 24896748 G T 43 84 BRCA TCGA-BH-A203 ZC3H12C SNP Nonsense_Mutation 11 110030002 T A 61 90 BRCA TCGA-BH-A203 NADSYN1 SNP Silent 11 71185527 C T 19 50 BRCA TCGA-BH-A203 MLL2 SNP Missense_Mutation 12 49426774 T A 55 56 BRCA TCGA-BH-A203 PMEL SNP Missense_Mutation 12 56351845 C T 22 94 BRCA TCGA-BH-A203 NXPH4 SNP Silent 12 57619524 C T 31 46 BRCA TCGA-BH-A203 CDK17 DEL Frame_Shift_Del 12 96688890 TACAGAAACAGC - 57 67 BRCA TCGA-BH-A203 TFDP1 SNP Missense_Mutation 13 114292199 G A 35 69 BRCA TCGA-BH-A203 CDX2 SNP Silent 13 28537414 C T 27 64 BRCA TCGA-BH-A203 RBM26 SNP Silent 13 79896574 G A 45 63 BRCA TCGA-BH-A203 ZFP36L1 DEL Frame_Shift_Del 14 69259611 TTCGCTCAAGTCGAAGATG - 56 57 BRCA TCGA-BH-A203 CEP128 SNP Missense_Mutation 14 81329162 T C 62 83 BRCA TCGA-BH-A203 ATP10A SNP Missense_Mutation 15 25953373 C G 24 98 BRCA TCGA-BH-A203 PALB2 SNP Nonsense_Mutation 16 23614905 G A 45 82 BRCA TCGA-BH-A203 FBXL8 SNP Silent 16 67196943 G A 38 48 BRCA TCGA-BH-A203 DPEP3 SNP Missense_Mutation 16 68009816 G T 35 61 BRCA TCGA-BH-A203 KLHL36 SNP Silent 16 84690716 G A 47 56 BRCA TCGA-BH-A203 RNF213 SNP Silent 17 78358925 A G 3 48 BRCA TCGA-BH-A203 FASN SNP Splice_Site 17 80047261 C A 24 87 BRCA TCGA-BH-A203 MYH14 SNP Missense_Mutation 19 50753006 C T 27 77 BRCA TCGA-BH-A203 SLC27A5 SNP Missense_Mutation 19 59021339 C T 23 51 BRCA TCGA-BH-A203 GLI2 SNP Silent 2 121708927 C T 19 58 BRCA TCGA-BH-A203 TTN SNP Nonsense_Mutation 2 179436920 G A 39 68 BRCA TCGA-BH-A203 PNPT1 SNP Missense_Mutation 2 55870522 C T 17 50 BRCA TCGA-BH-A203 XPO1 SNP Missense_Mutation 2 61719472 C T 31 100 BRCA TCGA-BH-A203 CDK5RAP1 SNP Missense_Mutation 20 31984736 C A 32 54 BRCA TCGA-BH-A203 PREX1 SNP Missense_Mutation 20 47251303 C T 23 57 BRCA TCGA-BH-A203 NEFH SNP Missense_Mutation 22 29885829 G A 37 65 BRCA TCGA-BH-A203 EIF3D SNP Silent 22 36907704 G A 38 47 BRCA TCGA-BH-A203 GLA SNP Missense_Mutation 23 100662776 G A 40 76 BRCA TCGA-BH-A203 GPRASP1 SNP Missense_Mutation 23 101912271 T G 55 61 BRCA TCGA-BH-A203 IGSF1 SNP Missense_Mutation 23 130411977 G T 46 73 BRCA TCGA-BH-A203 IRAK1 SNP Missense_Mutation 23 153282465 A T 14 54 BRCA TCGA-BH-A203 GNL3L SNP Missense_Mutation 23 54567799 C T 19 56 BRCA TCGA-BH-A203 FAM123B SNP Missense_Mutation 23 63410049 C T 26 55 BRCA TCGA-BH-A203 AR SNP Silent 23 66766554 C T 27 49 BRCA TCGA-BH-A203 ATP2B2 SNP Missense_Mutation 3 10370571 G A 40 89 BRCA TCGA-BH-A203 PLOD2 SNP Missense_Mutation 3 145791114 C T 19 59 BRCA TCGA-BH-A203 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A203 IQCG SNP Silent 3 197659062 G A 33 64 BRCA TCGA-BH-A203 OXSM SNP Missense_Mutation 3 25833460 C A 22 97 BRCA TCGA-BH-A203 ARAP2 SNP Missense_Mutation 4 36115810 T C 51 71 BRCA TCGA-BH-A203 N4BP2 SNP Missense_Mutation 4 40144366 A T 12 88 BRCA TCGA-BH-A203 ARL15 SNP Silent 5 53182436 C T 29 51 BRCA TCGA-BH-A203 COL9A1 SNP Missense_Mutation 6 71004156 G C 33 54 BRCA TCGA-BH-A203 SLC17A5 SNP Missense_Mutation 6 74346398 G C 33 63 BRCA TCGA-BH-A203 NRCAM SNP Silent 7 107820770 C T 23 20 BRCA TCGA-BH-A203 ZNF282 SNP Missense_Mutation 7 148895716 G A 40 55 BRCA TCGA-BH-A203 GLI3 SNP Missense_Mutation 7 42005234 A C 11 72 BRCA TCGA-BH-A203 PHYHIP SNP Silent 8 22084434 C T 23 44 BRCA TCGA-BH-A203 KIF12 SNP Silent 9 116858679 G A 45 53 BRCA TCGA-BH-A203 CNTRL SNP Missense_Mutation 9 123935683 G A 37 58 BRCA TCGA-BH-A203 GAPVD1 SNP Missense_Mutation 9 128064405 T C 52 91 BRCA TCGA-BH-A203 ST6GALNAC6 SNP Nonsense_Mutation 9 130656839 G C 45 54 BRCA TCGA-BH-A204 SPEN INS Frame_Shift_Ins 1 16202935 - TA 44 93 BRCA TCGA-BH-A204 CD46 SNP Missense_Mutation 1 207930364 T G 55 67 BRCA TCGA-BH-A204 AIDA SNP Silent 1 222849466 G A 37 49 BRCA TCGA-BH-A204 ZNF691 SNP Missense_Mutation 1 43317408 A G 6 62 BRCA TCGA-BH-A204 RERE SNP Missense_Mutation 1 8617573 C T 30 100 BRCA TCGA-BH-A204 CPN1 SNP Missense_Mutation 10 101823406 A G 12 89 BRCA TCGA-BH-A204 DYNC2H1 SNP Missense_Mutation 11 103091479 G T 44 100 BRCA TCGA-BH-A204 DDI1 SNP Missense_Mutation 11 103908332 C T 31 92 BRCA TCGA-BH-A204 USH1C SNP Missense_Mutation 11 17531172 G T 35 53 BRCA TCGA-BH-A204 MYBPC1 SNP Silent 12 102045070 C T 32 58 BRCA TCGA-BH-A204 PSMB5 DEL Frame_Shift_Del 14 23503966 GCCAGGCTCA - 42 57 BRCA TCGA-BH-A204 TJP1 SNP Nonsense_Mutation 15 30024679 C A 32 100 BRCA TCGA-BH-A204 SLTM SNP Missense_Mutation 15 59186732 C T 25 100 BRCA TCGA-BH-A204 ZNF469 SNP Missense_Mutation 16 88494721 T A 51 48 BRCA TCGA-BH-A204 MAP2K4 SNP Missense_Mutation 17 12016616 G T 36 94 BRCA TCGA-BH-A204 AKAP1 SNP Silent 17 55197673 C T 17 50 BRCA TCGA-BH-A204 ZNF180 SNP Silent 19 44980904 A T 11 41 BRCA TCGA-BH-A204 PRMT1 SNP Missense_Mutation 19 50183820 C G 30 93 BRCA TCGA-BH-A204 NBAS SNP Missense_Mutation 2 15307434 T C 52 66 BRCA TCGA-BH-A204 GRB14 SNP Missense_Mutation 2 165378582 G A 48 80 BRCA TCGA-BH-A204 GLS SNP Missense_Mutation 2 191827682 C T 23 35 BRCA TCGA-BH-A204 OCSTAMP SNP Missense_Mutation 20 45173985 G A 40 56 BRCA TCGA-BH-A204 MORC4 SNP Missense_Mutation 23 106221352 G T 44 57 BRCA TCGA-BH-A204 FAM127C SNP Missense_Mutation 23 134156443 A C 11 52 BRCA TCGA-BH-A204 FAM58A SNP Silent 23 152858123 A G 5 49 BRCA TCGA-BH-A204 ARAF SNP Missense_Mutation 23 47429359 G A 43 94 BRCA TCGA-BH-A204 ABCB7 SNP Missense_Mutation 23 74273323 T C 60 58 BRCA TCGA-BH-A204 CAND2 SNP Missense_Mutation 3 12856688 G A 38 94 BRCA TCGA-BH-A204 PRSS50 SNP Missense_Mutation 3 46759116 C T 27 50 BRCA TCGA-BH-A204 RAD54L2 SNP Splice_site 3 51673686 G A 43 96 BRCA TCGA-BH-A204 ADH1C SNP Silent 4 100261755 G A 40 57 BRCA TCGA-BH-A204 CCNA2 SNP Missense_Mutation 4 122743762 C A 17 75 BRCA TCGA-BH-A204 CHIC2 SNP Missense_Mutation 4 54880282 C T 31 72 BRCA TCGA-BH-A204 PTTG1 SNP Missense_Mutation 5 159854736 G A 45 78 BRCA TCGA-BH-A204 KIF6 SNP Missense_Mutation 6 39507794 G A 34 79 BRCA TCGA-BH-A204 MUC12 SNP Missense_Mutation 7 100646938 C G 17 52 BRCA TCGA-BH-A204 GRID2IP SNP Missense_Mutation 7 6542661 C T 23 71 BRCA TCGA-BH-A204 FZD6 SNP Missense_Mutation 8 104342280 C T 27 72 BRCA TCGA-BH-A204 COL15A1 SNP Missense_Mutation 9 101822233 C A 24 52 BRCA TCGA-BH-A204 UAP1L1 SNP Silent 9 139972912 G T 42 50 BRCA TCGA-BH-A208 CFH SNP Missense_Mutation 1 196654268 G A 45 51 BRCA TCGA-BH-A208 SHISA4 SNP Nonsense_Mutation 1 201859608 C G 29 78 BRCA TCGA-BH-A208 CR2 SNP Missense_Mutation 1 207648485 C G 29 58 BRCA TCGA-BH-A208 HDAC1 SNP Silent 1 32793146 G A 33 85 BRCA TCGA-BH-A208 CSMD2 SNP Missense_Mutation 1 34002643 C G 32 84 BRCA TCGA-BH-A208 WDR78 SNP Missense_Mutation 1 67371056 T C 60 32 BRCA TCGA-BH-A208 TNFRSF9 INS Frame_Shift_Ins 1 7993230 - ATAT 9 69 BRCA TCGA-BH-A208 RERE SNP Missense_Mutation 1 8421432 G T 41 99 BRCA TCGA-BH-A208 RUFY2 SNP Missense_Mutation 10 70152941 T C 51 71 BRCA TCGA-BH-A208 DNTT SNP Silent 10 98087355 G C 41 49 BRCA TCGA-BH-A208 KIRREL3 SNP Silent 11 126391325 C T 17 58 BRCA TCGA-BH-A208 OSBPL5 SNP Missense_Mutation 11 3111890 C T 31 68 BRCA TCGA-BH-A208 RTN3 SNP Missense_Mutation 11 63487595 G C 33 67 BRCA TCGA-BH-A208 CLEC12A SNP Silent 12 10137481 C T 19 48 BRCA TCGA-BH-A208 PUS1 SNP Silent 12 132423786 C T 29 59 BRCA TCGA-BH-A208 OVCH1 SNP Silent 12 29649525 A G 2 49 BRCA TCGA-BH-A208 SLC26A10 SNP Nonsense_Mutation 12 58018733 G T 41 56 BRCA TCGA-BH-A208 PDS5B SNP Missense_Mutation 13 33281097 C T 29 100 BRCA TCGA-BH-A208 SPPL2A SNP Missense_Mutation 15 51024862 C T 30 91 BRCA TCGA-BH-A208 RNF40 SNP Missense_Mutation 16 30778177 T A 55 88 BRCA TCGA-BH-A208 IRF8 SNP Nonsense_Mutation 16 85936652 C T 31 66 BRCA TCGA-BH-A208 PSMD11 SNP Missense_Mutation 17 30781593 C G 32 96 BRCA TCGA-BH-A208 GH2 SNP Silent 17 61957656 G A 43 51 BRCA TCGA-BH-A208 TP53 SNP Splice_Site 17 7578290 C G 24 77 BRCA TCGA-BH-A208 ZNF627 SNP Missense_Mutation 19 11728555 C G 29 69 BRCA TCGA-BH-A208 CYP2B6 SNP Missense_Mutation 19 41510050 C G 22 48 BRCA TCGA-BH-A208 XRCC1 SNP Missense_Mutation 19 44055732 G A 43 96 BRCA TCGA-BH-A208 SIGLEC8 SNP Missense_Mutation 19 51958011 C G 20 52 BRCA TCGA-BH-A208 LPIN1 SNP Missense_Mutation 2 11911646 C T 23 56 BRCA TCGA-BH-A208 LRP1B SNP Nonsense_Mutation 2 141819658 G A 45 57 BRCA TCGA-BH-A208 ALMS1 SNP Missense_Mutation 2 73717343 C G 29 61 BRCA TCGA-BH-A208 ALMS1 SNP Missense_Mutation 2 73717959 C T 29 54 BRCA TCGA-BH-A208 ALMS1 SNP Nonsense_Mutation 2 73718057 C T 29 63 BRCA TCGA-BH-A208 MRPL35 SNP Silent 2 86434315 C T 23 49 BRCA TCGA-BH-A208 PCSK2 SNP Missense_Mutation 20 17446160 G C 33 59 BRCA TCGA-BH-A208 BPIFB1 SNP Missense_Mutation 20 31890728 G A 33 44 BRCA TCGA-BH-A208 ARMCX3 SNP Silent 23 100880821 A G 3 48 BRCA TCGA-BH-A208 CHRDL1 SNP Missense_Mutation 23 110035325 G C 46 76 BRCA TCGA-BH-A208 ASMT SNP Missense_Mutation 23 1755428 G C 33 48 BRCA TCGA-BH-A208 RP2 SNP Missense_Mutation 23 46696579 C G 31 56 BRCA TCGA-BH-A208 MAGEE1 SNP Missense_Mutation 23 75651058 T C 51 60 BRCA TCGA-BH-A208 HDX SNP Missense_Mutation 23 83724462 C G 31 50 BRCA TCGA-BH-A208 CCDC48 SNP Missense_Mutation 3 128758648 C G 32 59 BRCA TCGA-BH-A208 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-BH-A208 FLNB SNP Missense_Mutation 3 58154337 G A 39 81 BRCA TCGA-BH-A208 ENPEP SNP Missense_Mutation 4 111474542 C T 29 97 BRCA TCGA-BH-A208 TRPC7 SNP Missense_Mutation 5 135692820 C T 19 99 BRCA TCGA-BH-A208 SYNE1 SNP Silent 6 152558036 C T 21 69 BRCA TCGA-BH-A208 MGAM SNP Missense_Mutation 7 141754683 C T 31 54 BRCA TCGA-BH-A208 AGAP3 SNP Missense_Mutation 7 150840935 G A 47 66 BRCA TCGA-BH-A208 HUS1 SNP Missense_Mutation 7 48018139 C T 29 94 BRCA TCGA-BH-A208 SLC39A4 SNP Silent 8 145638248 G A 37 63 BRCA TCGA-BH-A208 PROSC SNP Silent 8 37633453 G A 43 49 BRCA TCGA-BH-A208 SGK3 SNP Missense_Mutation 8 67740896 C G 32 85 BRCA TCGA-BH-A208 SULF1 SNP Nonsense_Mutation 8 70550877 C T 29 98 BRCA TCGA-BH-A209 PIP5K1A SNP Nonsense_Mutation 1 151219428 C T 29 74 BRCA TCGA-BH-A209 SUCO SNP Missense_Mutation 1 172558069 G C 45 86 BRCA TCGA-BH-A209 SRGAP2 SNP Splice_site 1 206611447 C A 29 60 BRCA TCGA-BH-A209 RPS6KC1 SNP Silent 1 213303216 C T 30 52 BRCA TCGA-BH-A209 ZNF496 SNP Missense_Mutation 1 247464393 C T 31 57 BRCA TCGA-BH-A209 SLC6A9 SNP Splice_Site 1 44476555 C T 32 93 BRCA TCGA-BH-A209 IL12RB2 SNP Missense_Mutation 1 67855809 G A 33 77 BRCA TCGA-BH-A209 GDF2 SNP Missense_Mutation 10 48413859 C T 31 66 BRCA TCGA-BH-A209 TRIM29 SNP Missense_Mutation 11 119998060 G A 33 80 BRCA TCGA-BH-A209 OR51S1 SNP Silent 11 4869758 C T 29 45 BRCA TCGA-BH-A209 OR5D16 SNP Silent 11 55606338 C T 19 50 BRCA TCGA-BH-A209 MS4A1 SNP Missense_Mutation 11 60229921 C G 32 76 BRCA TCGA-BH-A209 AHNAK SNP Missense_Mutation 11 62294670 C G 32 52 BRCA TCGA-BH-A209 SUV420H1 SNP Missense_Mutation 11 67925331 C T 29 84 BRCA TCGA-BH-A209 TRAFD1 SNP Missense_Mutation 12 112583428 G A 45 91 BRCA TCGA-BH-A209 COL2A1 SNP Missense_Mutation 12 48374414 C G 29 100 BRCA TCGA-BH-A209 KRT76 DEL In_Frame_Del 12 53162774 CTG - 20 54 BRCA TCGA-BH-A209 N4BP2L2 SNP Missense_Mutation 13 33092110 C G 32 91 BRCA TCGA-BH-A209 EDDM3A SNP Missense_Mutation 14 21215831 G A 33 46 BRCA TCGA-BH-A209 TRIM9 SNP Silent 14 51560947 G A 48 62 BRCA TCGA-BH-A209 RIN3 SNP Silent 14 93125804 C T 31 42 BRCA TCGA-BH-A209 CHRFAM7A SNP Missense_Mutation 15 30659709 A G 8 81 BRCA TCGA-BH-A209 RYR3 SNP Missense_Mutation 15 33833010 G A 47 84 BRCA TCGA-BH-A209 UNC13C SNP Missense_Mutation 15 54306457 G C 45 98 BRCA TCGA-BH-A209 POLG SNP Missense_Mutation 15 89872184 C T 32 50 BRCA TCGA-BH-A209 MCTP2 SNP Silent 15 94927324 C A 29 76 BRCA TCGA-BH-A209 CLCN7 SNP Silent 16 1500621 G A 33 81 BRCA TCGA-BH-A209 ERN2 SNP Silent 16 23722312 G A 35 77 BRCA TCGA-BH-A209 RBBP6 SNP Missense_Mutation 16 24578496 G C 33 94 BRCA TCGA-BH-A209 NUP93 SNP Missense_Mutation 16 56782199 G A 45 100 BRCA TCGA-BH-A209 CDH1 SNP Nonsense_Mutation 16 68835596 C T 31 67 BRCA TCGA-BH-A209 VAC14 SNP Missense_Mutation 16 70796903 G T 45 61 BRCA TCGA-BH-A209 KRT28 SNP Missense_Mutation 17 38950184 C T 31 78 BRCA TCGA-BH-A209 SLC4A1 SNP Silent 17 42330736 C T 29 52 BRCA TCGA-BH-A209 SPAG9 SNP Missense_Mutation 17 49083456 C G 32 100 BRCA TCGA-BH-A209 SPAG9 SNP Silent 17 49083547 C G 29 62 BRCA TCGA-BH-A209 RAD51C SNP Missense_Mutation 17 56770065 C T 30 57 BRCA TCGA-BH-A209 TMC6 SNP Missense_Mutation 17 76120837 A G 7 58 BRCA TCGA-BH-A209 MUC16 SNP Missense_Mutation 19 9086173 G A 44 44 BRCA TCGA-BH-A209 MUC16 SNP Silent 19 9088599 G C 47 42 BRCA TCGA-BH-A209 MUC16 SNP Silent 19 9090384 G A 43 32 BRCA TCGA-BH-A209 SLC5A7 SNP Missense_Mutation 2 108608600 G A 45 100 BRCA TCGA-BH-A209 ITGA6 SNP Missense_Mutation 2 173335724 G C 33 87 BRCA TCGA-BH-A209 MAP2 SNP Missense_Mutation 2 210558653 G C 45 59 BRCA TCGA-BH-A209 PREB SNP Silent 2 27355593 C T 21 83 BRCA TCGA-BH-A209 ERLEC1 SNP Missense_Mutation 2 54028744 C G 29 100 BRCA TCGA-BH-A209 ELMOD3 SNP Missense_Mutation 2 85604484 G C 33 94 BRCA TCGA-BH-A209 DEFB125 SNP Missense_Mutation 20 76927 G C 45 37 BRCA TCGA-BH-A209 GART SNP Silent 21 34876575 C T 29 57 BRCA TCGA-BH-A209 BCR SNP Missense_Mutation 22 23627293 G C 41 98 BRCA TCGA-BH-A209 GK SNP Missense_Mutation 23 30671665 C T 29 59 BRCA TCGA-BH-A209 SLC38A5 SNP Missense_Mutation 23 48326103 G C 45 58 BRCA TCGA-BH-A209 CACNA1F SNP Silent 23 49062124 C T 23 43 BRCA TCGA-BH-A209 IGSF11 SNP Missense_Mutation 3 118621736 G T 48 82 BRCA TCGA-BH-A209 ZNF148 DEL Frame_Shift_Del 3 124952376 CTTA - 32 56 BRCA TCGA-BH-A209 CNTN6 SNP Silent 3 1415621 C G 29 49 BRCA TCGA-BH-A209 DLG1 SNP Missense_Mutation 3 196786826 C G 32 97 BRCA TCGA-BH-A209 CMTM7 SNP Missense_Mutation 3 32493950 G A 48 56 BRCA TCGA-BH-A209 LMOD3 SNP Silent 3 69171352 C T 31 17 BRCA TCGA-BH-A209 MAML3 SNP Missense_Mutation 4 140811855 C G 32 66 BRCA TCGA-BH-A209 CWH43 SNP Missense_Mutation 4 49032952 C T 30 81 BRCA TCGA-BH-A209 LIN54 SNP Missense_Mutation 4 83857213 C G 30 100 BRCA TCGA-BH-A209 AFF1 SNP Missense_Mutation 4 88046286 C G 32 58 BRCA TCGA-BH-A209 DRD5 SNP Missense_Mutation 4 9784798 C T 19 83 BRCA TCGA-BH-A209 PCDHB8 SNP Missense_Mutation 5 140559351 G A 39 60 BRCA TCGA-BH-A209 KCNMB1 SNP Silent 5 169805861 C T 30 51 BRCA TCGA-BH-A209 GOPC SNP Missense_Mutation 6 117892082 G T 41 96 BRCA TCGA-BH-A209 EPM2A SNP Splice_site 6 145956381 C A 24 97 BRCA TCGA-BH-A209 T SNP Silent 6 166571842 G C 45 50 BRCA TCGA-BH-A209 SCAND3 SNP Missense_Mutation 6 28542837 C G 29 66 BRCA TCGA-BH-A209 AGBL3 SNP Missense_Mutation 7 134819891 G C 45 50 BRCA TCGA-BH-A209 TAS2R3 SNP Silent 7 141463992 C T 32 51 BRCA TCGA-BH-A209 DNAH11 SNP Missense_Mutation 7 21750285 G T 41 100 BRCA TCGA-BH-A209 COBL SNP Silent 7 51096585 C T 21 38 BRCA TCGA-BH-A209 GLCCI1 DEL Frame_Shift_Del 7 8099783 TC - 50 56 BRCA TCGA-BH-A209 PABPC1 SNP Silent 8 101730420 G C 46 50 BRCA TCGA-BH-A209 TRAPPC9 SNP Missense_Mutation 8 141415752 A T 12 77 BRCA TCGA-BH-A209 TRUB2 SNP Silent 9 131073254 C A 29 54 BRCA TCGA-BH-A209 RAPGEF1 SNP Missense_Mutation 9 134504605 C G 32 60 BRCA TCGA-BH-A209 ZCCHC6 SNP Missense_Mutation 9 88967818 C G 32 59 BRCA TCGA-BH-A209 ZNF367 SNP Missense_Mutation 9 99160571 C T 32 98 BRCA TCGA-BH-A28Q CREB3L4 SNP Missense_Mutation 1 153941846 G A 46 73 BRCA TCGA-BH-A28Q USH2A SNP Missense_Mutation 1 216172264 C T 19 64 BRCA TCGA-BH-A28Q RYR2 SNP Silent 1 237813233 C T 23 45 BRCA TCGA-BH-A28Q CHML SNP Missense_Mutation 1 241798530 T G 56 49 BRCA TCGA-BH-A28Q GATA3 DEL Frame_Shift_Del 10 8115737 CCAGACCAGAAAC - 30 70 BRCA TCGA-BH-A28Q CH25H SNP Missense_Mutation 10 90966611 G T 47 98 BRCA TCGA-BH-A28Q HOGA1 SNP Silent 10 99359502 G A 46 65 BRCA TCGA-BH-A28Q SCGB2A1 SNP Missense_Mutation 11 61977888 C G 32 58 BRCA TCGA-BH-A28Q TBX3 SNP Splice_Site 12 115120616 C T 18 86 BRCA TCGA-BH-A28Q BCL2L14 SNP Missense_Mutation 12 12232555 C G 25 53 BRCA TCGA-BH-A28Q SLC25A47 SNP Silent 14 100793545 C T 26 52 BRCA TCGA-BH-A28Q POMT2 SNP Missense_Mutation 14 77767528 C T 24 87 BRCA TCGA-BH-A28Q GIT1 SNP Silent 17 27903567 G A 38 51 BRCA TCGA-BH-A28Q DOC2B SNP Silent 17 6037 G A 40 48 BRCA TCGA-BH-A28Q TTLL4 SNP Missense_Mutation 2 219609846 T C 52 51 BRCA TCGA-BH-A28Q DIP2A SNP Missense_Mutation 21 47978254 G A 38 98 BRCA TCGA-BH-A28Q TOP3B SNP Missense_Mutation 22 22318370 G A 39 65 BRCA TCGA-BH-A28Q BRD1 SNP Missense_Mutation 22 50217038 C T 31 100 BRCA TCGA-BH-A28Q DCAF12L1 SNP Missense_Mutation 23 125686114 A C 11 76 BRCA TCGA-BH-A28Q ROS1 SNP Nonsense_Mutation 6 117642471 G A 38 60 BRCA TCGA-BH-A28Q CFTR SNP Missense_Mutation 7 117180174 G A 39 97 BRCA TCGA-C8-A12K IGSF3 SNP Missense_Mutation 1 117122205 G A 35 56 BRCA TCGA-C8-A12K LOC440563 SNP Missense_Mutation 1 13183223 T A 52 50 BRCA TCGA-C8-A12K TOR3A SNP Missense_Mutation 1 179054768 G A 33 53 BRCA TCGA-C8-A12K LHX4 SNP Missense_Mutation 1 180241004 G A 38 99 BRCA TCGA-C8-A12K DHX9 SNP Silent 1 182853847 C T 29 54 BRCA TCGA-C8-A12K FAM71A SNP Silent 1 212798330 C T 19 44 BRCA TCGA-C8-A12K USH2A SNP Missense_Mutation 1 216138777 A C 8 25 BRCA TCGA-C8-A12K USP48 SNP Silent 1 22084186 G T 37 44 BRCA TCGA-C8-A12K MEAF6 SNP Missense_Mutation 1 37979110 G C 33 59 BRCA TCGA-C8-A12K LRRC41 SNP Missense_Mutation 1 46752022 G C 33 55 BRCA TCGA-C8-A12K MCM10 SNP Missense_Mutation 10 13237166 C T 19 39 BRCA TCGA-C8-A12K DDX21 SNP Missense_Mutation 10 70737415 G A 33 67 BRCA TCGA-C8-A12K KCNJ1 SNP Missense_Mutation 11 128709242 C A 24 65 BRCA TCGA-C8-A12K PIK3C2A SNP Missense_Mutation 11 17121503 C T 22 87 BRCA TCGA-C8-A12K QSER1 SNP Missense_Mutation 11 32956801 G A 36 51 BRCA TCGA-C8-A12K CSTF3 SNP Missense_Mutation 11 33108591 C G 32 86 BRCA TCGA-C8-A12K OR51B6 SNP Silent 11 5373049 T A 54 49 BRCA TCGA-C8-A12K TRIM34 SNP Missense_Mutation 11 5624607 T A 53 83 BRCA TCGA-C8-A12K TUT1 SNP Nonsense_Mutation 11 62348589 C A 30 62 BRCA TCGA-C8-A12K STX5 SNP Silent 11 62598707 C G 27 55 BRCA TCGA-C8-A12K EIF1AD SNP Missense_Mutation 11 65767848 T C 59 86 BRCA TCGA-C8-A12K TAS2R14 SNP Missense_Mutation 12 11091327 T G 62 50 BRCA TCGA-C8-A12K CACNA2D4 SNP Missense_Mutation 12 1920881 C A 19 49 BRCA TCGA-C8-A12K SMARCC2 SNP Missense_Mutation 12 56567506 C G 18 97 BRCA TCGA-C8-A12K USP15 SNP Missense_Mutation 12 62775318 G C 36 54 BRCA TCGA-C8-A12K B4GALNT3 SNP Missense_Mutation 12 665730 G A 38 83 BRCA TCGA-C8-A12K FGD6 SNP Missense_Mutation 12 95603690 T A 56 57 BRCA TCGA-C8-A12K MOK SNP Silent 14 102698065 A G 1 44 BRCA TCGA-C8-A12K ATG14 SNP Splice_Site 14 55852815 C G 32 82 BRCA TCGA-C8-A12K APBA2 SNP Missense_Mutation 15 29346952 G C 37 63 BRCA TCGA-C8-A12K FAM96A SNP Missense_Mutation 15 64367694 C G 32 85 BRCA TCGA-C8-A12K FAM108C1 SNP Silent 15 81046555 C A 29 54 BRCA TCGA-C8-A12K ATXN2L SNP Missense_Mutation 16 28842316 C T 24 92 BRCA TCGA-C8-A12K PSKH1 SNP Nonsense_Mutation 16 67942876 C G 29 66 BRCA TCGA-C8-A12K MSLN SNP Silent 16 816661 C T 30 42 BRCA TCGA-C8-A12K FAM18B2-CDRT4 SNP Missense_Mutation 17 15450400 C G 32 58 BRCA TCGA-C8-A12K KIAA0100 DEL In_Frame_Del 17 26961913 TCA - 62 90 BRCA TCGA-C8-A12K MYO18A SNP Silent 17 27424325 C T 21 55 BRCA TCGA-C8-A12K PNPO SNP Nonsense_Mutation 17 46023746 A T 5 87 BRCA TCGA-C8-A12K APPBP2 SNP Silent 17 58531762 T C 59 49 BRCA TCGA-C8-A12K TP53 SNP Missense_Mutation 17 7578265 A G 12 68 BRCA TCGA-C8-A12K RNF213 SNP Silent 17 78306165 C T 32 68 BRCA TCGA-C8-A12K FHOD3 SNP Missense_Mutation 18 34298590 T G 55 86 BRCA TCGA-C8-A12K TCF4 SNP Missense_Mutation 18 52901809 C A 29 93 BRCA TCGA-C8-A12K ARHGAP28 SNP Missense_Mutation 18 6868167 C A 30 63 BRCA TCGA-C8-A12K ATG4D SNP Missense_Mutation 19 10662976 G C 33 73 BRCA TCGA-C8-A12K EMR2 SNP Silent 19 14884859 G A 43 47 BRCA TCGA-C8-A12K ENSG00000213985 SNP Missense_Mutation 19 20369309 G C 43 61 BRCA TCGA-C8-A12K ZFR2 SNP Missense_Mutation 19 3852528 G C 40 47 BRCA TCGA-C8-A12K ZIK1 SNP Missense_Mutation 19 58102405 G T 48 91 BRCA TCGA-C8-A12K MBD3L1 SNP Missense_Mutation 19 8953926 C T 24 49 BRCA TCGA-C8-A12K CKAP2L SNP Missense_Mutation 2 113518307 G C 45 75 BRCA TCGA-C8-A12K SAP130 SNP Silent 2 128767869 C T 23 44 BRCA TCGA-C8-A12K GALNT13 SNP Missense_Mutation 2 155265555 A T 3 76 BRCA TCGA-C8-A12K ICA1L SNP Missense_Mutation 2 203661619 C G 29 69 BRCA TCGA-C8-A12K CPS1 SNP Missense_Mutation 2 211512678 C G 17 99 BRCA TCGA-C8-A12K IRS1 SNP Silent 2 227662969 C T 24 65 BRCA TCGA-C8-A12K AGXT SNP Missense_Mutation 2 241808313 C G 22 73 BRCA TCGA-C8-A12K XDH SNP Missense_Mutation 2 31621458 C G 32 54 BRCA TCGA-C8-A12K SMYD1 SNP Missense_Mutation 2 88409999 C G 26 55 BRCA TCGA-C8-A12K ELMO2 SNP Splice_Site 20 45021783 C A 32 97 BRCA TCGA-C8-A12K ZNF74 SNP Missense_Mutation 22 20760374 C G 24 51 BRCA TCGA-C8-A12K SMTN SNP Nonsense_Mutation 22 31486977 C A 29 57 BRCA TCGA-C8-A12K PLA2G6 SNP Missense_Mutation 22 38536013 G A 37 56 BRCA TCGA-C8-A12K NXF5 SNP Silent 23 101091722 A G 11 51 BRCA TCGA-C8-A12K DCAF12L1 SNP Silent 23 125686220 G A 40 51 BRCA TCGA-C8-A12K BCORL1 SNP Silent 23 129148107 G A 38 16 BRCA TCGA-C8-A12K ATXN3L SNP Missense_Mutation 23 13337695 C A 21 53 BRCA TCGA-C8-A12K ZNF449 SNP Missense_Mutation 23 134493837 G T 45 61 BRCA TCGA-C8-A12K FMR1 SNP Missense_Mutation 23 147014261 C G 17 70 BRCA TCGA-C8-A12K ATP2B3 SNP Splice_site 23 152827699 A T 7 86 BRCA TCGA-C8-A12K POLA1 SNP Missense_Mutation 23 24760174 C T 25 94 BRCA TCGA-C8-A12K RPGR DEL Frame_Shift_Del 23 38145517 C - 30 48 BRCA TCGA-C8-A12K FOXO4 SNP Silent 23 70316804 T A 59 52 BRCA TCGA-C8-A12K MED12 SNP Silent 23 70352290 C G 30 50 BRCA TCGA-C8-A12K SELT SNP Silent 3 150321284 T A 64 51 BRCA TCGA-C8-A12K ECE2 SNP Silent 3 184003269 C A 30 47 BRCA TCGA-C8-A12K LEPREL1 SNP Splice_site 3 189704666 C G 30 84 BRCA TCGA-C8-A12K KIAA0232 SNP Missense_Mutation 4 6865611 T G 50 63 BRCA TCGA-C8-A12K APC SNP Missense_Mutation 5 112179630 G C 33 97 BRCA TCGA-C8-A12K KCNN2 SNP Missense_Mutation 5 113740461 G C 33 86 BRCA TCGA-C8-A12K FBN2 SNP Missense_Mutation 5 127686601 A T 11 88 BRCA TCGA-C8-A12K FAM13B SNP Missense_Mutation 5 137284667 T C 54 63 BRCA TCGA-C8-A12K PKIB SNP Silent 6 123038978 T C 55 55 BRCA TCGA-C8-A12K FAM65B SNP Missense_Mutation 6 24850064 C G 21 100 BRCA TCGA-C8-A12K MAPK13 SNP Silent 6 36103593 G A 35 55 BRCA TCGA-C8-A12K DAAM2 SNP Missense_Mutation 6 39824117 C A 30 62 BRCA TCGA-C8-A12K NCR2 SNP Missense_Mutation 6 41309625 G T 33 46 BRCA TCGA-C8-A12K SCIN SNP Splice_Site 7 12620847 G A 40 99 BRCA TCGA-C8-A12K PLXNA4 SNP Missense_Mutation 7 131887475 G A 35 72 BRCA TCGA-C8-A12K ZNF862 SNP Missense_Mutation 7 149557807 G C 45 75 BRCA TCGA-C8-A12K FAM183B SNP Nonsense_Mutation 7 38725521 G A 40 49 BRCA TCGA-C8-A12K IKZF1 SNP Missense_Mutation 7 50450348 T A 55 94 BRCA TCGA-C8-A12K NUDCD1 SNP Nonsense_Mutation 8 110308645 C A 29 71 BRCA TCGA-C8-A12K ZFAT SNP Splice_Site 8 135669982 T C 55 77 BRCA TCGA-C8-A12K COL22A1 SNP Splice_Site 8 139767455 T A 55 71 BRCA TCGA-C8-A12K ADRA1A SNP Silent 8 26627933 G A 39 28 BRCA TCGA-C8-A12K PXDNL SNP Silent 8 52336142 T G 55 45 BRCA TCGA-C8-A12K CSPP1 SNP Missense_Mutation 8 68087581 G C 33 68 BRCA TCGA-C8-A12K ARFGEF1 SNP Missense_Mutation 8 68138335 C T 25 100 BRCA TCGA-C8-A12K IFNA2 SNP Missense_Mutation 9 21384882 G C 45 48 BRCA TCGA-C8-A12K ENSG00000232067 SNP Missense_Mutation 9 34834342 C T 17 50 BRCA TCGA-C8-A12K PRUNE2 SNP Missense_Mutation 9 79324986 T A 54 67 BRCA TCGA-C8-A12K SPTLC1 SNP Silent 9 94821572 A G 5 69 BRCA TCGA-C8-A12L PDE4DIP SNP Missense_Mutation 1 144930847 G C 34 71 BRCA TCGA-C8-A12L SETDB1 SNP Missense_Mutation 1 150923915 C G 32 98 BRCA TCGA-C8-A12L FLG DEL In_Frame_Del 1 152285926 TCAGGCTGT - 58 56 BRCA TCGA-C8-A12L FCRL1 SNP Missense_Mutation 1 157771712 G T 36 49 BRCA TCGA-C8-A12L SPTA1 SNP Missense_Mutation 1 158582648 C T 26 61 BRCA TCGA-C8-A12L PYHIN1 SNP Missense_Mutation 1 158943528 C A 30 41 BRCA TCGA-C8-A12L COPA SNP Missense_Mutation 1 160280016 T A 57 88 BRCA TCGA-C8-A12L VANGL2 SNP Silent 1 160389022 C T 27 56 BRCA TCGA-C8-A12L CLCNKA SNP Missense_Mutation 1 16351326 C T 22 90 BRCA TCGA-C8-A12L CRB1 SNP Missense_Mutation 1 197396665 T A 50 59 BRCA TCGA-C8-A12L PLA2G2D SNP Missense_Mutation 1 20442903 C T 25 38 BRCA TCGA-C8-A12L OBSCN SNP Missense_Mutation 1 228402602 C G 20 87 BRCA TCGA-C8-A12L AJAP1 SNP Missense_Mutation 1 4832546 C T 31 53 BRCA TCGA-C8-A12L ABCA4 SNP Missense_Mutation 1 94528272 C G 32 99 BRCA TCGA-C8-A12L PDCD11 SNP Missense_Mutation 10 105173788 C G 17 61 BRCA TCGA-C8-A12L OR2AG2 SNP Silent 11 6790159 G A 38 50 BRCA TCGA-C8-A12L ODZ4 SNP Missense_Mutation 11 78369780 A G 11 60 BRCA TCGA-C8-A12L ANO4 SNP Silent 12 101504243 C G 24 73 BRCA TCGA-C8-A12L PTPN11 SNP Missense_Mutation 12 112884103 G A 44 89 BRCA TCGA-C8-A12L WNT5B SNP Missense_Mutation 12 1755250 C G 25 86 BRCA TCGA-C8-A12L TENC1 SNP Missense_Mutation 12 53453704 C T 25 55 BRCA TCGA-C8-A12L LOC100286917 SNP Silent 12 9571035 C T 24 61 BRCA TCGA-C8-A12L HAL SNP Missense_Mutation 12 96388760 C T 29 99 BRCA TCGA-C8-A12L PSME1 SNP Silent 14 24605501 C G 22 73 BRCA TCGA-C8-A12L ITPK1 SNP Silent 14 93412701 G C 39 20 BRCA TCGA-C8-A12L DDX24 SNP Missense_Mutation 14 94524203 C G 30 87 BRCA TCGA-C8-A12L CCDC78 SNP Missense_Mutation 16 774397 G C 42 85 BRCA TCGA-C8-A12L SGSM2 SNP Missense_Mutation 17 2270688 A G 4 89 BRCA TCGA-C8-A12L NOS2 SNP Silent 17 26087755 G A 44 46 BRCA TCGA-C8-A12L SLC4A1 SNP Missense_Mutation 17 42330612 C T 19 97 BRCA TCGA-C8-A12L MYCBPAP SNP Missense_Mutation 17 48600415 G A 39 91 BRCA TCGA-C8-A12L ABCA10 SNP Missense_Mutation 17 67188786 C A 20 87 BRCA TCGA-C8-A12L TP53 SNP Missense_Mutation 17 7577568 C A 17 93 BRCA TCGA-C8-A12L FASN SNP Missense_Mutation 17 80040513 C T 19 53 BRCA TCGA-C8-A12L PTPN2 SNP Missense_Mutation 18 12825813 A C 12 61 BRCA TCGA-C8-A12L PGLYRP2 DEL Frame_Shift_Del 19 15586540 A - 9 78 BRCA TCGA-C8-A12L CYP4F11 DEL In_Frame_Del 19 16024565 GCTCCACCCGCA - 42 64 BRCA TCGA-C8-A12L HAUS5 SNP Missense_Mutation 19 36110636 C G 19 61 BRCA TCGA-C8-A12L RYR1 SNP Missense_Mutation 19 38960007 G A 40 93 BRCA TCGA-C8-A12L GIPR SNP Silent 19 46181247 G T 42 47 BRCA TCGA-C8-A12L KLK5 SNP Missense_Mutation 19 51452007 C A 20 59 BRCA TCGA-C8-A12L ATRAID DEL In_Frame_Del 2 27439748 GGAGCCACCACTCTATCC - 43 77 BRCA TCGA-C8-A12L C2orf16 SNP Missense_Mutation 2 27800838 C T 18 49 BRCA TCGA-C8-A12L XPO1 SNP Missense_Mutation 2 61720102 G T 45 66 BRCA TCGA-C8-A12L LIME1 SNP Missense_Mutation 20 62370149 G T 41 52 BRCA TCGA-C8-A12L ZNF295 SNP Nonsense_Mutation 21 43411588 G A 46 96 BRCA TCGA-C8-A12L C21orf33 SNP Silent 21 45553624 A G 8 50 BRCA TCGA-C8-A12L SFI1 INS Frame_Shift_Ins 22 31971290 - A 41 50 BRCA TCGA-C8-A12L MYH9 SNP Missense_Mutation 22 36696999 T G 52 61 BRCA TCGA-C8-A12L HNRNPH2 SNP Missense_Mutation 23 100667034 T A 55 72 BRCA TCGA-C8-A12L VSIG1 SNP Missense_Mutation 23 107316029 G A 43 59 BRCA TCGA-C8-A12L DDX26B SNP Missense_Mutation 23 134706902 C G 20 65 BRCA TCGA-C8-A12L EGFL6 SNP Silent 23 13645206 T A 55 31 BRCA TCGA-C8-A12L SLITRK2 SNP Missense_Mutation 23 144905067 C A 18 81 BRCA TCGA-C8-A12L FAM47A SNP Missense_Mutation 23 34148875 C A 28 28 BRCA TCGA-C8-A12L PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-C8-A12L CCDC39 SNP Missense_Mutation 3 180366114 C T 17 55 BRCA TCGA-C8-A12L RARB SNP Silent 3 25622057 A T 11 41 BRCA TCGA-C8-A12L IL17RB SNP Missense_Mutation 3 53899288 G A 34 44 BRCA TCGA-C8-A12L FLNB DEL Frame_Shift_Del 3 58156382 C - 25 84 BRCA TCGA-C8-A12L PDHA2 SNP Missense_Mutation 4 96762083 G A 40 76 BRCA TCGA-C8-A12L FBXL17 SNP Splice_site 5 107559823 T A 56 69 BRCA TCGA-C8-A12L IL7R SNP Missense_Mutation 5 35871268 A G 4 45 BRCA TCGA-C8-A12L DMGDH DEL Frame_Shift_Del 5 78351620 TAAATGCCTTTACCTGACCAGTTTCTTCTTCCAGTTTCTCA - 61 50 BRCA TCGA-C8-A12L HIST1H3D SNP Missense_Mutation 6 26197245 G T 36 67 BRCA TCGA-C8-A12L C4A SNP Missense_Mutation 6 31965519 G T 41 66 BRCA TCGA-C8-A12L C4B SNP Missense_Mutation 6 31998256 G T 41 70 BRCA TCGA-C8-A12L TRERF1 SNP Silent 6 42236918 G A 38 51 BRCA TCGA-C8-A12L EYS SNP Missense_Mutation 6 64498094 C A 21 71 BRCA TCGA-C8-A12L TSPAN12 SNP Missense_Mutation 7 120496813 G A 42 82 BRCA TCGA-C8-A12L MGAM SNP Silent 7 141783171 C T 32 50 BRCA TCGA-C8-A12L PTPRN2 SNP Missense_Mutation 7 157903560 C T 27 38 BRCA TCGA-C8-A12L GCK SNP Missense_Mutation 7 44192974 A T 7 90 BRCA TCGA-C8-A12L C8orf44 SNP Missense_Mutation 8 67592086 C T 23 47 BRCA TCGA-C8-A12L CDH17 SNP Missense_Mutation 8 95182679 G T 44 73 BRCA TCGA-C8-A12L ESRP1 SNP Silent 8 95658491 C T 19 56 BRCA TCGA-C8-A12L CPQ SNP Missense_Mutation 8 98041636 C T 27 77 BRCA TCGA-C8-A12L TAF1L INS Frame_Shift_Ins 9 32634816 - A 58 50 BRCA TCGA-C8-A12M DAP3 SNP Missense_Mutation 1 155701787 C A 22 69 BRCA TCGA-C8-A12M PYHIN1 SNP Missense_Mutation 1 158913619 G T 41 67 BRCA TCGA-C8-A12M KIF26B SNP Silent 1 245766076 C T 19 57 BRCA TCGA-C8-A12M PSTK DEL Frame_Shift_Del 10 124742808 CT - 28 50 BRCA TCGA-C8-A12M ANK3 SNP Missense_Mutation 10 61819641 G C 35 82 BRCA TCGA-C8-A12M GATA3 INS Frame_Shift_Ins 10 8115873 - C 54 59 BRCA TCGA-C8-A12M C11orf53 SNP Silent 11 111156467 G A 37 41 BRCA TCGA-C8-A12M OR8D4 SNP Missense_Mutation 11 123777212 T G 55 66 BRCA TCGA-C8-A12M SRPR SNP Missense_Mutation 11 126134994 A G 6 91 BRCA TCGA-C8-A12M USH1C SNP Silent 11 17531314 G A 38 33 BRCA TCGA-C8-A12M KBTBD4 SNP Missense_Mutation 11 47594816 T C 58 90 BRCA TCGA-C8-A12M PTPRJ SNP Missense_Mutation 11 48164480 C G 24 49 BRCA TCGA-C8-A12M DNHD1 SNP Missense_Mutation 11 6561187 C T 27 71 BRCA TCGA-C8-A12M PITPNM2 SNP Missense_Mutation 12 123498580 G A 39 83 BRCA TCGA-C8-A12M LRP6 SNP Silent 12 12397348 C T 26 47 BRCA TCGA-C8-A12M GPR84 SNP Missense_Mutation 12 54757355 C A 24 82 BRCA TCGA-C8-A12M OR6C70 SNP Missense_Mutation 12 55863307 T C 49 51 BRCA TCGA-C8-A12M PTPRB SNP Nonsense_Mutation 12 70933795 G A 37 53 BRCA TCGA-C8-A12M PTPRQ SNP Nonsense_Mutation 12 80935456 C T 17 61 BRCA TCGA-C8-A12M TMTC4 SNP Missense_Mutation 13 101278370 T G 64 63 BRCA TCGA-C8-A12M WBP4 SNP Missense_Mutation 13 41639395 G T 35 58 BRCA TCGA-C8-A12M CPB2 SNP Silent 13 46629931 G T 47 54 BRCA TCGA-C8-A12M DUOX1 SNP Missense_Mutation 15 45444508 C T 19 24 BRCA TCGA-C8-A12M NEIL1 SNP Nonsense_Mutation 15 75647144 C T 27 45 BRCA TCGA-C8-A12M COPS3 SNP Missense_Mutation 17 17163709 T C 56 77 BRCA TCGA-C8-A12M MLLT6 SNP Silent 17 36865482 C T 25 55 BRCA TCGA-C8-A12M CRHR1 SNP Missense_Mutation 17 43906585 A C 1 75 BRCA TCGA-C8-A12M PELP1 SNP Missense_Mutation 17 4576281 C A 22 59 BRCA TCGA-C8-A12M TRIM25 SNP Missense_Mutation 17 54978817 C G 20 41 BRCA TCGA-C8-A12M TANC2 SNP Missense_Mutation 17 61428682 G T 41 100 BRCA TCGA-C8-A12M SMURF2 DEL Frame_Shift_Del 17 62553744 AG - 7 50 BRCA TCGA-C8-A12M ABCA5 SNP Missense_Mutation 17 67282161 T C 49 54 BRCA TCGA-C8-A12M LGALS3BP SNP Silent 17 76968195 C T 30 50 BRCA TCGA-C8-A12M NR1H2 SNP Missense_Mutation 19 50881600 C T 23 62 BRCA TCGA-C8-A12M ZSCAN5C SNP Missense_Mutation 19 56720339 T G 60 76 BRCA TCGA-C8-A12M OR6B3 SNP Silent 2 240984860 T C 59 2 BRCA TCGA-C8-A12M TMX4 SNP Missense_Mutation 20 8000123 G C 36 72 BRCA TCGA-C8-A12M COL4A5 SNP Missense_Mutation 23 107814670 G T 39 93 BRCA TCGA-C8-A12M GNG5P2 SNP Silent 23 109590120 G A 38 52 BRCA TCGA-C8-A12M PCDH19 SNP Missense_Mutation 23 99663201 G T 46 56 BRCA TCGA-C8-A12M KIAA1407 SNP Nonsense_Mutation 3 113721362 G A 40 69 BRCA TCGA-C8-A12M CACNA2D3 SNP Missense_Mutation 3 54786629 C T 31 97 BRCA TCGA-C8-A12M CENPE SNP Missense_Mutation 4 104059573 T C 56 47 BRCA TCGA-C8-A12M DKK2 SNP Missense_Mutation 4 107845202 C T 19 98 BRCA TCGA-C8-A12M GUF1 SNP Splice_site 4 44682858 C G 23 94 BRCA TCGA-C8-A12M PPAT SNP Missense_Mutation 4 57272683 T C 52 90 BRCA TCGA-C8-A12M LARP1 SNP Missense_Mutation 5 154181757 A T 12 94 BRCA TCGA-C8-A12M RASA1 INS Splice_Site 5 86670139 - A 57 93 BRCA TCGA-C8-A12M HFE SNP Missense_Mutation 6 26093039 C G 26 69 BRCA TCGA-C8-A12M MYO6 DEL Frame_Shift_Del 6 76554660 ACAA - 10 88 BRCA TCGA-C8-A12M TRRAP SNP Missense_Mutation 7 98528431 T A 58 93 BRCA TCGA-C8-A12M CSMD1 SNP Splice_site 8 3057330 C T 22 43 BRCA TCGA-C8-A12M PPP3R2 SNP Silent 9 104356697 G A 37 39 BRCA TCGA-C8-A12M GOLGA1 SNP Missense_Mutation 9 127683437 T C 51 62 BRCA TCGA-C8-A12M ENG SNP Missense_Mutation 9 130605471 C T 31 43 BRCA TCGA-C8-A12M NTNG2 SNP Silent 9 135073814 C T 23 34 BRCA TCGA-C8-A12M TTF1 SNP Silent 9 135273709 G A 37 41 BRCA TCGA-C8-A12M TAF1L SNP Silent 9 32632815 G T 34 55 BRCA TCGA-C8-A12N ATP5F1 SNP Silent 1 112002198 A G 2 55 BRCA TCGA-C8-A12N COL17A1 SNP Silent 10 105811267 G A 38 22 BRCA TCGA-C8-A12N PARVA SNP Silent 11 12399200 C T 21 46 BRCA TCGA-C8-A12N TAS2R31 SNP Missense_Mutation 12 11183409 C G 32 44 BRCA TCGA-C8-A12N SBNO1 SNP Splice_Site 12 123794131 C A 32 80 BRCA TCGA-C8-A12N RIMBP2 SNP Missense_Mutation 12 130907060 C T 23 72 BRCA TCGA-C8-A12N CACNA1C SNP Silent 12 2775903 G A 38 48 BRCA TCGA-C8-A12N MLL2 DEL Frame_Shift_Del 12 49445909 G - 35 55 BRCA TCGA-C8-A12N ARHGAP9 SNP Missense_Mutation 12 57872994 G A 40 57 BRCA TCGA-C8-A12N MYH11 SNP Silent 16 15831386 G T 37 51 BRCA TCGA-C8-A12N KRT27 SNP Silent 17 38933368 G T 45 49 BRCA TCGA-C8-A12N CD300LG SNP Missense_Mutation 17 41931261 T C 57 45 BRCA TCGA-C8-A12N NOTCH3 SNP Silent 19 15276820 G A 48 52 BRCA TCGA-C8-A12N TTLL8 SNP Missense_Mutation 22 50472912 A G 9 52 BRCA TCGA-C8-A12N ZC3H12B SNP Missense_Mutation 23 64721753 T C 54 84 BRCA TCGA-C8-A12N PCDH19 SNP Missense_Mutation 23 99605659 G C 42 96 BRCA TCGA-C8-A12N PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-C8-A12N RARS SNP Missense_Mutation 5 167943847 C T 28 98 BRCA TCGA-C8-A12N EXOC3 SNP Silent 5 457049 C G 31 46 BRCA TCGA-C8-A12N MAP3K1 DEL Frame_Shift_Del 5 56167804 AC - 14 87 BRCA TCGA-C8-A12N MAP3K1 DEL Frame_Shift_Del 5 56189423 TCTTCGTTGTTTAG - 54 49 BRCA TCGA-C8-A12N MAP3K1 SNP Missense_Mutation 5 56189440 T A 56 88 BRCA TCGA-C8-A12N NCOA7 SNP Missense_Mutation 6 126243897 G C 39 100 BRCA TCGA-C8-A12N EPHA1 SNP Missense_Mutation 7 143095047 G C 33 75 BRCA TCGA-C8-A12N INHBA SNP Silent 7 41729851 G A 46 55 BRCA TCGA-C8-A12O FLVCR1 SNP Missense_Mutation 1 213037133 C T 32 62 BRCA TCGA-C8-A12O TRIM17 SNP Missense_Mutation 1 228596209 C T 23 76 BRCA TCGA-C8-A12O SLC9A1 SNP Silent 1 27429181 G A 44 69 BRCA TCGA-C8-A12O MCOLN2 SNP Missense_Mutation 1 85403443 C T 29 71 BRCA TCGA-C8-A12O MASTL SNP Missense_Mutation 10 27459378 A G 1 56 BRCA TCGA-C8-A12O PHRF1 DEL In_Frame_Del 11 610989 GGA - 47 60 BRCA TCGA-C8-A12O AIP SNP Missense_Mutation 11 67254510 G A 37 34 BRCA TCGA-C8-A12O DNAJB13 SNP Missense_Mutation 11 73680349 C G 22 94 BRCA TCGA-C8-A12O KITLG SNP Missense_Mutation 12 88910120 G A 41 79 BRCA TCGA-C8-A12O ATP2B1 SNP Missense_Mutation 12 89998003 A G 4 93 BRCA TCGA-C8-A12O MYCBP2 SNP Missense_Mutation 13 77644827 A G 7 88 BRCA TCGA-C8-A12O TSHR SNP Missense_Mutation 14 81609772 C A 26 100 BRCA TCGA-C8-A12O ENSG00000215315 SNP Silent 15 30337381 G A 39 47 BRCA TCGA-C8-A12O MEX3B SNP Silent 15 82336479 G A 40 64 BRCA TCGA-C8-A12O CDH15 SNP Missense_Mutation 16 89245960 G A 40 62 BRCA TCGA-C8-A12O MYH8 SNP Missense_Mutation 17 10303960 G T 33 100 BRCA TCGA-C8-A12O TP53 SNP Missense_Mutation 17 7577120 C T 19 94 BRCA TCGA-C8-A12O DNAH17 SNP Nonsense_Mutation 17 76487632 G A 38 62 BRCA TCGA-C8-A12O PRKCG SNP Silent 19 54403682 G A 39 26 BRCA TCGA-C8-A12O ZNF814 SNP Missense_Mutation 19 58384420 A G 12 46 BRCA TCGA-C8-A12O GREB1 SNP Silent 2 11772121 C T 19 39 BRCA TCGA-C8-A12O HNRNPA3 SNP Silent 2 178081262 T C 52 54 BRCA TCGA-C8-A12O HSPD1 SNP Missense_Mutation 2 198353857 C A 24 99 BRCA TCGA-C8-A12O MFF SNP Missense_Mutation 2 228194484 A T 10 76 BRCA TCGA-C8-A12O POFUT1 SNP Missense_Mutation 20 30816166 T A 58 79 BRCA TCGA-C8-A12O KIAA1755 SNP Silent 20 36874487 C T 23 31 BRCA TCGA-C8-A12O CDH4 SNP Missense_Mutation 20 60419757 C T 23 64 BRCA TCGA-C8-A12O RUNX1 SNP Missense_Mutation 21 36252860 C G 21 100 BRCA TCGA-C8-A12O APOL3 SNP Silent 22 36537431 C T 31 34 BRCA TCGA-C8-A12O GAGE2B SNP Missense_Mutation 23 49236865 G C 33 45 BRCA TCGA-C8-A12O INPP4B SNP Missense_Mutation 4 143114276 C T 23 70 BRCA TCGA-C8-A12O C5orf42 SNP Missense_Mutation 5 37158402 T A 49 52 BRCA TCGA-C8-A12O C5orf42 SNP Missense_Mutation 5 37169279 G A 47 63 BRCA TCGA-C8-A12O ZYX SNP Silent 7 143085937 C T 18 54 BRCA TCGA-C8-A12O DAB2IP SNP Missense_Mutation 9 124528882 C T 27 96 BRCA TCGA-C8-A12P PRPF38B SNP Missense_Mutation 1 109241882 A T 9 90 BRCA TCGA-C8-A12P SF3B4 SNP Missense_Mutation 1 149898614 G C 45 64 BRCA TCGA-C8-A12P FLG2 SNP Missense_Mutation 1 152326999 C A 26 50 BRCA TCGA-C8-A12P OR6K6 SNP Missense_Mutation 1 158724994 A T 14 58 BRCA TCGA-C8-A12P PYHIN1 SNP Missense_Mutation 1 158914788 C A 30 51 BRCA TCGA-C8-A12P MRPS14 SNP Missense_Mutation 1 174983888 G A 38 62 BRCA TCGA-C8-A12P TNN SNP Missense_Mutation 1 175116123 G C 45 75 BRCA TCGA-C8-A12P GLRX2 SNP Silent 1 193074652 C T 31 56 BRCA TCGA-C8-A12P UBR4 SNP Missense_Mutation 1 19487440 C T 32 98 BRCA TCGA-C8-A12P MARK1 SNP Missense_Mutation 1 220804452 G A 41 88 BRCA TCGA-C8-A12P RYR2 SNP Silent 1 237532863 C T 30 52 BRCA TCGA-C8-A12P OR2L8 SNP Silent 1 248112345 G A 45 41 BRCA TCGA-C8-A12P PDIK1L SNP Nonsense_Mutation 1 26448562 C T 29 77 BRCA TCGA-C8-A12P BAI2 SNP Missense_Mutation 1 32222176 G T 46 62 BRCA TCGA-C8-A12P BAI2 SNP Missense_Mutation 1 32222272 C T 30 80 BRCA TCGA-C8-A12P KIAA0754 SNP Missense_Mutation 1 39877270 G A 33 64 BRCA TCGA-C8-A12P PTGER3 SNP Missense_Mutation 1 71478130 A T 2 77 BRCA TCGA-C8-A12P AK5 SNP Missense_Mutation 1 77883374 G A 45 71 BRCA TCGA-C8-A12P LPHN2 SNP Missense_Mutation 1 82456485 G A 37 74 BRCA TCGA-C8-A12P ITIH5 SNP Missense_Mutation 10 7621758 G A 38 62 BRCA TCGA-C8-A12P QSER1 SNP Missense_Mutation 11 32955856 C G 29 75 BRCA TCGA-C8-A12P LRP4 SNP Missense_Mutation 11 46889599 T C 60 65 BRCA TCGA-C8-A12P OR4C12 SNP Missense_Mutation 11 50003262 G A 45 69 BRCA TCGA-C8-A12P PRG2 SNP Missense_Mutation 11 57156722 C T 32 51 BRCA TCGA-C8-A12P OR5B17 SNP Silent 11 58126186 G A 44 53 BRCA TCGA-C8-A12P FAM111B DEL Frame_Shift_Del 11 58892505 GA - 41 48 BRCA TCGA-C8-A12P DLG2 SNP Missense_Mutation 11 83984277 G A 37 69 BRCA TCGA-C8-A12P DEPDC4 SNP Missense_Mutation 12 100660851 C T 18 56 BRCA TCGA-C8-A12P TAS2R50 SNP Splice_site 12 11138561 C T 29 51 BRCA TCGA-C8-A12P HECTD4 SNP Missense_Mutation 12 112645729 C G 29 100 BRCA TCGA-C8-A12P C12orf77 SNP Missense_Mutation 12 25148864 G A 33 49 BRCA TCGA-C8-A12P LIMA1 SNP Silent 12 50571543 C A 29 55 BRCA TCGA-C8-A12P KRT80 SNP Missense_Mutation 12 52574446 C A 25 41 BRCA TCGA-C8-A12P DNAJC14 SNP Silent 12 56221462 C T 21 67 BRCA TCGA-C8-A12P LRP1 SNP Missense_Mutation 12 57532316 G A 37 96 BRCA TCGA-C8-A12P PZP SNP Missense_Mutation 12 9317892 C G 25 79 BRCA TCGA-C8-A12P PCID2 SNP Missense_Mutation 13 113851339 G A 45 49 BRCA TCGA-C8-A12P RNASE3 SNP Missense_Mutation 14 21360155 C T 23 55 BRCA TCGA-C8-A12P AKAP6 SNP Missense_Mutation 14 33293371 C G 29 100 BRCA TCGA-C8-A12P TRIM9 SNP Silent 14 51448553 C G 30 76 BRCA TCGA-C8-A12P STYX SNP Missense_Mutation 14 53211599 G A 46 90 BRCA TCGA-C8-A12P SYNE2 SNP Missense_Mutation 14 64600841 C T 32 75 BRCA TCGA-C8-A12P BTBD7 SNP Missense_Mutation 14 93723687 T G 54 93 BRCA TCGA-C8-A12P DDX24 SNP Missense_Mutation 14 94526604 G C 46 88 BRCA TCGA-C8-A12P HERC2 SNP Silent 15 28419644 C A 19 43 BRCA TCGA-C8-A12P SCG5 SNP Missense_Mutation 15 32936016 G A 45 83 BRCA TCGA-C8-A12P ELL3 SNP Missense_Mutation 15 44066875 C T 30 57 BRCA TCGA-C8-A12P ENSG00000212664 SNP Nonsense_Mutation 15 71633928 G A 40 62 BRCA TCGA-C8-A12P MESDC2 SNP Missense_Mutation 15 81271807 C G 30 89 BRCA TCGA-C8-A12P ERN2 SNP Missense_Mutation 16 23722313 G C 41 52 BRCA TCGA-C8-A12P FUK SNP Missense_Mutation 16 70497598 A C 3 47 BRCA TCGA-C8-A12P ZNF821 SNP Missense_Mutation 16 71894324 G A 40 98 BRCA TCGA-C8-A12P EXOC7 SNP Missense_Mutation 17 74084623 C G 32 70 BRCA TCGA-C8-A12P TP53 SNP Missense_Mutation 17 7577539 G A 39 60 BRCA TCGA-C8-A12P ALOXE3 SNP Missense_Mutation 17 8020169 C T 30 75 BRCA TCGA-C8-A12P ANKRD30B SNP Silent 18 14843061 C G 28 50 BRCA TCGA-C8-A12P EMR3 SNP Missense_Mutation 19 14748956 G A 33 75 BRCA TCGA-C8-A12P CHERP SNP Missense_Mutation 19 16652701 A C 7 88 BRCA TCGA-C8-A12P CHERP DEL Frame_Shift_Del 19 16652708 ACTTGTAGTA - 6 88 BRCA TCGA-C8-A12P ATP13A1 SNP Splice_site 19 19756232 C G 29 92 BRCA TCGA-C8-A12P ZNF536 SNP Silent 19 31039202 C T 21 84 BRCA TCGA-C8-A12P GRAMD1A SNP Silent 19 35504261 G C 45 70 BRCA TCGA-C8-A12P GAPDHS SNP Silent 19 36035879 C T 29 57 BRCA TCGA-C8-A12P MLL4 SNP Missense_Mutation 19 36210398 G C 33 68 BRCA TCGA-C8-A12P ZNF829 SNP Missense_Mutation 19 37383084 C G 32 51 BRCA TCGA-C8-A12P ZNF829 SNP Splice_Site 19 37383374 C G 32 82 BRCA TCGA-C8-A12P HKR1 SNP Missense_Mutation 19 37853811 C G 24 61 BRCA TCGA-C8-A12P HKR1 SNP Missense_Mutation 19 37854586 C T 29 87 BRCA TCGA-C8-A12P CREB3L3 SNP Missense_Mutation 19 4171688 C G 23 58 BRCA TCGA-C8-A12P SLC17A7 SNP Missense_Mutation 19 49938086 G A 45 77 BRCA TCGA-C8-A12P FAP SNP Missense_Mutation 2 163072487 G C 37 70 BRCA TCGA-C8-A12P SCN1A SNP Missense_Mutation 2 166903316 C G 29 100 BRCA TCGA-C8-A12P ORC2 SNP Missense_Mutation 2 201778053 C T 29 98 BRCA TCGA-C8-A12P RHOB SNP Silent 2 20647544 C T 32 64 BRCA TCGA-C8-A12P ADCY3 SNP Silent 2 25065185 G A 40 47 BRCA TCGA-C8-A12P FOSL2 SNP Silent 2 28635012 G A 47 55 BRCA TCGA-C8-A12P TMC2 SNP Missense_Mutation 20 2542550 G A 37 79 BRCA TCGA-C8-A12P CPXM1 SNP Missense_Mutation 20 2777840 G A 45 66 BRCA TCGA-C8-A12P DOK5 SNP Missense_Mutation 20 53260061 C T 26 70 BRCA TCGA-C8-A12P BIRC7 SNP Missense_Mutation 20 61867638 G C 33 60 BRCA TCGA-C8-A12P CHRNA4 SNP Missense_Mutation 20 61981765 C T 27 99 BRCA TCGA-C8-A12P DOPEY2 SNP Missense_Mutation 21 37665636 G A 45 70 BRCA TCGA-C8-A12P TRPM2 SNP Missense_Mutation 21 45815402 C T 23 68 BRCA TCGA-C8-A12P CABIN1 SNP Silent 22 24573644 C G 22 46 BRCA TCGA-C8-A12P APOL4 SNP Silent 22 36587925 C T 32 31 BRCA TCGA-C8-A12P L3MBTL2 SNP Silent 22 41626159 G A 45 62 BRCA TCGA-C8-A12P CRELD2 SNP Missense_Mutation 22 50319160 G A 39 87 BRCA TCGA-C8-A12P GPRASP2 SNP Missense_Mutation 23 101970776 G C 45 71 BRCA TCGA-C8-A12P ACTRT1 SNP Missense_Mutation 23 127185866 A G 3 82 BRCA TCGA-C8-A12P IGSF1 SNP Silent 23 130412089 G T 45 50 BRCA TCGA-C8-A12P EGFL6 SNP Silent 23 13636126 C A 22 55 BRCA TCGA-C8-A12P ATP6AP1 SNP Silent 23 153660671 C T 29 56 BRCA TCGA-C8-A12P UBA1 SNP Missense_Mutation 23 47073983 G A 46 96 BRCA TCGA-C8-A12P HDAC6 SNP Missense_Mutation 23 48681990 G A 37 31 BRCA TCGA-C8-A12P AKAP4 SNP Missense_Mutation 23 49957750 A T 4 51 BRCA TCGA-C8-A12P WNK3 SNP Silent 23 54263733 G A 45 62 BRCA TCGA-C8-A12P KIF4A SNP Missense_Mutation 23 69625735 G A 33 70 BRCA TCGA-C8-A12P CXorf65 SNP Missense_Mutation 23 70324637 G A 41 71 BRCA TCGA-C8-A12P FLJ44635 SNP Missense_Mutation 23 71379809 A G 10 52 BRCA TCGA-C8-A12P TBL1X SNP Nonsense_Mutation 23 9621720 C T 27 39 BRCA TCGA-C8-A12P SLCO2A1 SNP Missense_Mutation 3 133664066 C G 27 51 BRCA TCGA-C8-A12P ESYT3 SNP Missense_Mutation 3 138180987 G A 40 90 BRCA TCGA-C8-A12P TRIM42 SNP Missense_Mutation 3 140397118 G C 33 65 BRCA TCGA-C8-A12P HTR3D SNP Silent 3 183755826 G A 44 64 BRCA TCGA-C8-A12P SACM1L SNP Missense_Mutation 3 45746631 G C 33 63 BRCA TCGA-C8-A12P SETD2 DEL Frame_Shift_Del 3 47058665 T - 59 90 BRCA TCGA-C8-A12P PHF17 SNP Missense_Mutation 4 129770145 G A 45 98 BRCA TCGA-C8-A12P PDGFC SNP Silent 4 157689125 G A 33 100 BRCA TCGA-C8-A12P FAM218A SNP Missense_Mutation 4 165878596 G C 33 51 BRCA TCGA-C8-A12P WDR17 SNP Missense_Mutation 4 177046468 C T 26 82 BRCA TCGA-C8-A12P SULT1E1 SNP Missense_Mutation 4 70709918 C T 31 58 BRCA TCGA-C8-A12P PTPN13 SNP Missense_Mutation 4 87696433 G A 33 71 BRCA TCGA-C8-A12P PJA2 SNP Missense_Mutation 5 108714379 T A 63 62 BRCA TCGA-C8-A12P ZRSR1 SNP Missense_Mutation 5 112227496 G C 33 51 BRCA TCGA-C8-A12P PCDHGA6 SNP Nonsense_Mutation 5 140755127 G T 33 69 BRCA TCGA-C8-A12P LRRC14B SNP Missense_Mutation 5 192381 C T 31 72 BRCA TCGA-C8-A12P PRKAA1 SNP Silent 5 40798178 G A 37 65 BRCA TCGA-C8-A12P C7 SNP Missense_Mutation 5 40959700 G C 33 83 BRCA TCGA-C8-A12P VCAN SNP Missense_Mutation 5 82833462 C G 32 52 BRCA TCGA-C8-A12P RASA1 SNP Missense_Mutation 5 86633865 C G 17 100 BRCA TCGA-C8-A12P L3MBTL3 SNP Missense_Mutation 6 130370912 C G 30 61 BRCA TCGA-C8-A12P ALDH8A1 SNP Missense_Mutation 6 135239645 C T 23 100 BRCA TCGA-C8-A12P PDE10A SNP Silent 6 165863749 C T 29 52 BRCA TCGA-C8-A12P NUP153 SNP Missense_Mutation 6 17637836 T A 60 91 BRCA TCGA-C8-A12P BTN2A2 SNP Missense_Mutation 6 26388255 C A 26 63 BRCA TCGA-C8-A12P OR2B2 SNP Missense_Mutation 6 27879467 C T 19 44 BRCA TCGA-C8-A12P CD109 SNP Missense_Mutation 6 74473391 C G 32 79 BRCA TCGA-C8-A12P LAMB1 SNP Missense_Mutation 7 107601001 G T 45 82 BRCA TCGA-C8-A12P FLNC SNP Missense_Mutation 7 128480154 T C 56 92 BRCA TCGA-C8-A12P MKRN1 SNP Missense_Mutation 7 140154430 C T 31 97 BRCA TCGA-C8-A12P BRAF SNP Nonsense_Mutation 7 140500217 C A 32 98 BRCA TCGA-C8-A12P RNF32 SNP Missense_Mutation 7 156437412 G C 33 72 BRCA TCGA-C8-A12P INMT SNP Missense_Mutation 7 30793370 A T 12 62 BRCA TCGA-C8-A12P AVL9 SNP Missense_Mutation 7 32598959 G C 33 48 BRCA TCGA-C8-A12P BBS9 SNP Missense_Mutation 7 33388717 A C 1 59 BRCA TCGA-C8-A12P POU6F2 SNP Silent 7 39503976 T C 50 55 BRCA TCGA-C8-A12P GRB10 SNP Missense_Mutation 7 50680488 C T 32 99 BRCA TCGA-C8-A12P TBL2 SNP Missense_Mutation 7 72984983 G C 45 95 BRCA TCGA-C8-A12P ICA1 SNP Silent 7 8167561 A G 2 26 BRCA TCGA-C8-A12P ABCB1 SNP Silent 7 87225124 T C 56 59 BRCA TCGA-C8-A12P SLC25A32 SNP Missense_Mutation 8 104419920 G C 45 99 BRCA TCGA-C8-A12P PKHD1L1 DEL Frame_Shift_Del 8 110463293 CT - 20 58 BRCA TCGA-C8-A12P MTMR9 SNP Missense_Mutation 8 11180245 G A 37 96 BRCA TCGA-C8-A12P CSMD3 SNP Missense_Mutation 8 113314091 G A 34 79 BRCA TCGA-C8-A12P CYP11B2 SNP Missense_Mutation 8 143993470 C A 30 75 BRCA TCGA-C8-A12P TOX SNP Splice_Site 8 59764365 C G 32 91 BRCA TCGA-C8-A12P LY96 SNP Silent 8 74939031 G A 45 51 BRCA TCGA-C8-A12P WDR31 SNP Silent 9 116094279 C T 29 54 BRCA TCGA-C8-A12P TTC16 SNP Missense_Mutation 9 130486524 C G 18 87 BRCA TCGA-C8-A12P SURF2 SNP Silent 9 136227991 C T 29 51 BRCA TCGA-C8-A12P RPS6 SNP Missense_Mutation 9 19378776 C G 32 55 BRCA TCGA-C8-A12P DDX58 SNP Silent 9 32491384 A G 16 39 BRCA TCGA-C8-A12P UBAP2 SNP Nonsense_Mutation 9 33944419 G A 47 88 BRCA TCGA-C8-A12P TLN1 SNP Missense_Mutation 9 35711069 C T 29 100 BRCA TCGA-C8-A12P ECM2 SNP Missense_Mutation 9 95263288 G A 39 83 BRCA TCGA-C8-A12Q SETDB1 SNP Missense_Mutation 1 150923915 C T 32 98 BRCA TCGA-C8-A12Q EFNA3 SNP Missense_Mutation 1 155058975 G T 42 61 BRCA TCGA-C8-A12Q SCAMP3 SNP Missense_Mutation 1 155231906 C T 31 64 BRCA TCGA-C8-A12Q INSRR SNP Silent 1 156823931 G A 34 94 BRCA TCGA-C8-A12Q SPTA1 SNP Missense_Mutation 1 158644181 C T 29 54 BRCA TCGA-C8-A12Q LGR6 SNP Missense_Mutation 1 202266674 C T 26 85 BRCA TCGA-C8-A12Q GNPAT SNP Silent 1 231396288 C T 30 61 BRCA TCGA-C8-A12Q SRRM1 SNP Missense_Mutation 1 24978962 G A 33 95 BRCA TCGA-C8-A12Q ADPRHL2 SNP Missense_Mutation 1 36557241 G A 33 80 BRCA TCGA-C8-A12Q BCAR3 SNP Silent 1 94048401 C T 22 60 BRCA TCGA-C8-A12Q ACTR1A SNP Missense_Mutation 10 104241877 C T 30 100 BRCA TCGA-C8-A12Q C10orf53 SNP Missense_Mutation 10 50916467 A G 7 50 BRCA TCGA-C8-A12Q C10orf12 SNP Missense_Mutation 10 98742331 C T 29 69 BRCA TCGA-C8-A12Q ZDHHC13 SNP Splice_site 11 19169220 G A 39 99 BRCA TCGA-C8-A12Q TRIM21 SNP Missense_Mutation 11 4411328 C A 32 71 BRCA TCGA-C8-A12Q OR5M3 SNP Silent 11 56237827 G A 45 53 BRCA TCGA-C8-A12Q TRIM5 SNP Silent 11 5701120 T C 59 45 BRCA TCGA-C8-A12Q ADRBK1 SNP Missense_Mutation 11 67050618 C G 30 94 BRCA TCGA-C8-A12Q ME3 SNP Missense_Mutation 11 86160981 C T 32 78 BRCA TCGA-C8-A12Q NCOR2 SNP Splice_site 12 124979693 C G 23 73 BRCA TCGA-C8-A12Q DHX37 SNP Missense_Mutation 12 125461919 G A 42 98 BRCA TCGA-C8-A12Q RIMBP2 SNP Silent 12 130926616 G T 35 57 BRCA TCGA-C8-A12Q DCTN2 SNP Missense_Mutation 12 57925870 G A 41 49 BRCA TCGA-C8-A12Q LRRIQ1 SNP Missense_Mutation 12 85450282 G C 33 49 BRCA TCGA-C8-A12Q DYNC1H1 SNP Splice_Site 14 102516407 G A 35 100 BRCA TCGA-C8-A12Q PRMT5 SNP Silent 14 23395360 G A 45 50 BRCA TCGA-C8-A12Q REC8 SNP Silent 14 24644763 C T 32 51 BRCA TCGA-C8-A12Q MOAP1 SNP Nonsense_Mutation 14 93650053 C A 32 70 BRCA TCGA-C8-A12Q ALDH1A3 SNP Missense_Mutation 15 101438383 C G 19 33 BRCA TCGA-C8-A12Q BAHD1 SNP Missense_Mutation 15 40750766 G A 45 87 BRCA TCGA-C8-A12Q PLA2G4F SNP Missense_Mutation 15 42446363 G C 33 57 BRCA TCGA-C8-A12Q ZFP106 SNP Splice_site 15 42749157 G A 37 78 BRCA TCGA-C8-A12Q MYO5A SNP Missense_Mutation 15 52652227 C T 31 98 BRCA TCGA-C8-A12Q VPS13C SNP Missense_Mutation 15 62239428 C A 29 74 BRCA TCGA-C8-A12Q TLN2 SNP Missense_Mutation 15 63031644 C T 18 100 BRCA TCGA-C8-A12Q ZNF267 SNP Silent 16 31927082 T C 60 45 BRCA TCGA-C8-A12Q MEFV SNP Missense_Mutation 16 3298943 C A 31 55 BRCA TCGA-C8-A12Q SHCBP1 SNP Missense_Mutation 16 46633858 A C 8 60 BRCA TCGA-C8-A12Q N4BP1 SNP Missense_Mutation 16 48585301 C T 29 97 BRCA TCGA-C8-A12Q PAPD5 SNP Missense_Mutation 16 50258849 G A 33 86 BRCA TCGA-C8-A12Q NFE2L1 SNP Nonsense_Mutation 17 46128581 C G 29 76 BRCA TCGA-C8-A12Q CEP95 SNP Silent 17 62533819 C T 30 64 BRCA TCGA-C8-A12Q MRPL38 SNP Missense_Mutation 17 73898220 A G 4 60 BRCA TCGA-C8-A12Q TP53 SNP Missense_Mutation 17 7578236 A T 14 88 BRCA TCGA-C8-A12Q ATP5A1 SNP Missense_Mutation 18 43668162 C G 29 99 BRCA TCGA-C8-A12Q ZNF700 SNP Silent 19 12059454 C T 30 42 BRCA TCGA-C8-A12Q HOOK2 SNP Missense_Mutation 19 12885536 C T 31 76 BRCA TCGA-C8-A12Q CALR3 SNP Missense_Mutation 19 16593522 C A 26 77 BRCA TCGA-C8-A12Q ATP8B3 SNP Silent 19 1796813 C A 25 51 BRCA TCGA-C8-A12Q ZNF85 SNP Silent 19 21116931 G A 33 49 BRCA TCGA-C8-A12Q ZNF208 SNP Silent 19 22155448 C T 32 46 BRCA TCGA-C8-A12Q MATK SNP Missense_Mutation 19 3784877 G C 42 56 BRCA TCGA-C8-A12Q PSG6 SNP Missense_Mutation 19 43414651 G C 45 49 BRCA TCGA-C8-A12Q RTN2 SNP Missense_Mutation 19 45992785 T C 59 51 BRCA TCGA-C8-A12Q ZNF611 SNP Missense_Mutation 19 53209290 C G 32 62 BRCA TCGA-C8-A12Q GP6 SNP Silent 19 55526128 G A 37 50 BRCA TCGA-C8-A12Q PEG3 SNP Nonsense_Mutation 19 57326917 G A 37 57 BRCA TCGA-C8-A12Q XAB2 SNP Silent 19 7687717 G A 38 49 BRCA TCGA-C8-A12Q UXS1 SNP Missense_Mutation 2 106780148 C T 32 85 BRCA TCGA-C8-A12Q BAZ2B SNP Nonsense_Mutation 2 160295653 G C 45 79 BRCA TCGA-C8-A12Q ITSN2 SNP Missense_Mutation 2 24484451 G C 33 89 BRCA TCGA-C8-A12Q MSH6 SNP Missense_Mutation 2 48027214 C G 29 64 BRCA TCGA-C8-A12Q LOC400986 SNP Missense_Mutation 2 96585654 G T 48 49 BRCA TCGA-C8-A12Q DTD1 SNP Missense_Mutation 20 18724832 G A 37 80 BRCA TCGA-C8-A12Q SULF2 SNP Missense_Mutation 20 46385992 C T 27 91 BRCA TCGA-C8-A12Q ADRM1 SNP Silent 20 60883775 G A 37 46 BRCA TCGA-C8-A12Q ZNF280B SNP Nonsense_Mutation 22 22842274 G A 45 66 BRCA TCGA-C8-A12Q ZNF280B SNP Missense_Mutation 22 22843589 G C 33 56 BRCA TCGA-C8-A12Q PRAME SNP Missense_Mutation 22 22892625 C T 31 39 BRCA TCGA-C8-A12Q SLC2A11 SNP Nonsense_Mutation 22 24210689 G T 45 66 BRCA TCGA-C8-A12Q XBP1 DEL Frame_Shift_Del 22 29191398 AC - 10 76 BRCA TCGA-C8-A12Q GGA1 SNP Missense_Mutation 22 38019460 G A 37 83 BRCA TCGA-C8-A12Q EIF3L SNP Missense_Mutation 22 38266249 C T 31 66 BRCA TCGA-C8-A12Q XRCC6 SNP Missense_Mutation 22 42018039 G C 37 61 BRCA TCGA-C8-A12Q XRCC6 SNP Missense_Mutation 22 42024199 G A 45 98 BRCA TCGA-C8-A12Q AFF2 SNP Missense_Mutation 23 147743846 C A 22 77 BRCA TCGA-C8-A12Q SYAP1 SNP Silent 23 16774820 C A 29 66 BRCA TCGA-C8-A12Q ZPLD1 SNP Nonsense_Mutation 3 102181129 C G 29 96 BRCA TCGA-C8-A12Q ITGB5 SNP Silent 3 124578168 G T 45 61 BRCA TCGA-C8-A12Q IFT80 SNP Silent 3 159976355 T A 51 40 BRCA TCGA-C8-A12Q PLCD1 SNP Silent 3 38051649 G A 45 55 BRCA TCGA-C8-A12Q DNAH1 SNP Silent 3 52360796 C T 29 49 BRCA TCGA-C8-A12Q PROS1 SNP Missense_Mutation 3 93629501 G A 45 64 BRCA TCGA-C8-A12Q CAMK1 SNP Missense_Mutation 3 9799335 G A 38 48 BRCA TCGA-C8-A12Q C4orf29 SNP Silent 4 128938554 G C 45 72 BRCA TCGA-C8-A12Q BOD1L1 SNP Missense_Mutation 4 13605023 C G 29 51 BRCA TCGA-C8-A12Q BOD1L1 SNP Missense_Mutation 4 13605203 C G 32 47 BRCA TCGA-C8-A12Q SH3TC1 SNP Missense_Mutation 4 8206976 C T 30 64 BRCA TCGA-C8-A12Q ITK SNP Missense_Mutation 5 156675970 C A 28 54 BRCA TCGA-C8-A12Q C5orf42 SNP Missense_Mutation 5 37213766 C T 19 52 BRCA TCGA-C8-A12Q C5orf42 SNP Missense_Mutation 5 37224748 C T 29 79 BRCA TCGA-C8-A12Q GZMK INS Frame_Shift_Ins 5 54329596 - AT 45 88 BRCA TCGA-C8-A12Q GPR98 SNP Missense_Mutation 5 90077371 G C 45 66 BRCA TCGA-C8-A12Q MLLT4 SNP Missense_Mutation 6 168319551 G T 48 100 BRCA TCGA-C8-A12Q GPSM3 SNP Missense_Mutation 6 32159275 C A 28 64 BRCA TCGA-C8-A12Q LRRC73 SNP Silent 6 43476523 G A 41 58 BRCA TCGA-C8-A12Q DEFB114 SNP Missense_Mutation 6 49928136 C A 29 54 BRCA TCGA-C8-A12Q COL12A1 SNP Missense_Mutation 6 75893674 G A 45 83 BRCA TCGA-C8-A12Q CDHR3 SNP Missense_Mutation 7 105660837 G C 45 85 BRCA TCGA-C8-A12Q PHF14 SNP Missense_Mutation 7 11030350 G C 33 73 BRCA TCGA-C8-A12Q HECW1 SNP Missense_Mutation 7 43590177 G A 38 100 BRCA TCGA-C8-A12Q CHCHD2 SNP Missense_Mutation 7 56171926 G A 36 99 BRCA TCGA-C8-A12Q PHTF2 SNP Missense_Mutation 7 77531171 C T 23 65 BRCA TCGA-C8-A12Q LOC100287016 SNP Missense_Mutation 8 74896789 G C 40 78 BRCA TCGA-C8-A12Q COL15A1 SNP Missense_Mutation 9 101778269 T A 51 49 BRCA TCGA-C8-A12Q RNF20 SNP Missense_Mutation 9 104323426 C G 29 98 BRCA TCGA-C8-A12Q GOLGA1 SNP Silent 9 127660909 T C 56 56 BRCA TCGA-C8-A12Q PMPCA SNP Missense_Mutation 9 139309033 G A 45 96 BRCA TCGA-C8-A12Q UBAP1 SNP Missense_Mutation 9 34241364 C T 21 99 BRCA TCGA-C8-A12T SARS SNP Missense_Mutation 1 109779045 G T 45 99 BRCA TCGA-C8-A12T PTPN22 SNP Missense_Mutation 1 114397122 C A 29 94 BRCA TCGA-C8-A12T CSDE1 SNP Missense_Mutation 1 115276687 G A 45 86 BRCA TCGA-C8-A12T ASH1L SNP Missense_Mutation 1 155450397 G C 33 68 BRCA TCGA-C8-A12T IQGAP3 SNP Missense_Mutation 1 156530801 C T 18 51 BRCA TCGA-C8-A12T C1orf114 SNP Missense_Mutation 1 169390881 G T 33 61 BRCA TCGA-C8-A12T CACNA1E SNP Missense_Mutation 1 181680184 C T 23 75 BRCA TCGA-C8-A12T ASPM SNP Missense_Mutation 1 197061060 C T 18 44 BRCA TCGA-C8-A12T SDCCAG8 SNP Missense_Mutation 1 243579083 G A 41 91 BRCA TCGA-C8-A12T NLRP3 SNP Missense_Mutation 1 247587541 C G 24 58 BRCA TCGA-C8-A12T ARID1A SNP Nonsense_Mutation 1 27057874 C T 29 83 BRCA TCGA-C8-A12T MACF1 SNP Missense_Mutation 1 39751334 A T 14 77 BRCA TCGA-C8-A12T MAST2 SNP Missense_Mutation 1 46488611 C G 30 79 BRCA TCGA-C8-A12T ORC1 SNP Missense_Mutation 1 52861727 C G 30 64 BRCA TCGA-C8-A12T SLC45A1 SNP Missense_Mutation 1 8395594 C A 30 58 BRCA TCGA-C8-A12T SH3PXD2A SNP Missense_Mutation 10 105377012 C G 29 78 BRCA TCGA-C8-A12T CDC123 SNP Missense_Mutation 10 12291674 C T 32 96 BRCA TCGA-C8-A12T NSMCE4A SNP Missense_Mutation 10 123720991 G T 45 62 BRCA TCGA-C8-A12T ACADSB SNP Missense_Mutation 10 124802613 C T 29 83 BRCA TCGA-C8-A12T ACADSB SNP Missense_Mutation 10 124812623 C T 57 78 BRCA TCGA-C8-A12T METTL10 SNP Missense_Mutation 10 126450881 G A 37 30 BRCA TCGA-C8-A12T VIM SNP Missense_Mutation 10 17278368 G C 33 99 BRCA TCGA-C8-A12T SEC24C SNP Missense_Mutation 10 75525340 C G 29 72 BRCA TCGA-C8-A12T DYDC1 SNP Missense_Mutation 10 82111696 C T 29 54 BRCA TCGA-C8-A12T FAS SNP Missense_Mutation 10 90773881 G A 45 64 BRCA TCGA-C8-A12T LGI1 SNP Missense_Mutation 10 95518519 C G 30 93 BRCA TCGA-C8-A12T DDI1 SNP Missense_Mutation 11 103908037 C T 19 64 BRCA TCGA-C8-A12T ZBTB16 SNP Missense_Mutation 11 113934294 C T 19 100 BRCA TCGA-C8-A12T MICAL2 SNP Missense_Mutation 11 12241781 G C 41 86 BRCA TCGA-C8-A12T ROBO4 SNP Missense_Mutation 11 124761564 G A 41 79 BRCA TCGA-C8-A12T FAM118B SNP Silent 11 126120562 C G 32 59 BRCA TCGA-C8-A12T SRPR SNP Missense_Mutation 11 126133864 C T 29 99 BRCA TCGA-C8-A12T MUC5B SNP Silent 11 1269972 C T 29 48 BRCA TCGA-C8-A12T PRDM10 SNP Missense_Mutation 11 129775573 G A 46 71 BRCA TCGA-C8-A12T ARHGAP1 SNP Silent 11 46702881 G A 45 77 BRCA TCGA-C8-A12T GLT8D2 SNP Missense_Mutation 12 104388153 T A 51 79 BRCA TCGA-C8-A12T RFX4 SNP Missense_Mutation 12 107083069 C G 32 97 BRCA TCGA-C8-A12T BTBD11 SNP Missense_Mutation 12 108008853 C T 29 99 BRCA TCGA-C8-A12T WSCD2 SNP Missense_Mutation 12 108620839 G A 45 95 BRCA TCGA-C8-A12T SELPLG SNP Missense_Mutation 12 109017614 G A 40 54 BRCA TCGA-C8-A12T GCN1L1 SNP Silent 12 120582590 C T 29 64 BRCA TCGA-C8-A12T B3GNT4 SNP Missense_Mutation 12 122691843 C T 29 98 BRCA TCGA-C8-A12T OR8S1 SNP Silent 12 48920158 G A 45 64 BRCA TCGA-C8-A12T KRT1 SNP Silent 12 53071193 G A 37 57 BRCA TCGA-C8-A12T ERBB3 SNP Missense_Mutation 12 56478826 C G 32 56 BRCA TCGA-C8-A12T A2ML1 SNP Silent 12 8995942 C T 29 54 BRCA TCGA-C8-A12T TPP2 SNP Missense_Mutation 13 103287966 G T 36 95 BRCA TCGA-C8-A12T TMCO3 SNP Missense_Mutation 13 114188508 G C 33 93 BRCA TCGA-C8-A12T POLR1D SNP Missense_Mutation 13 28197278 G C 33 56 BRCA TCGA-C8-A12T BRCA2 SNP Missense_Mutation 13 32971062 G C 33 59 BRCA TCGA-C8-A12T KL SNP Missense_Mutation 13 33635518 G A 47 100 BRCA TCGA-C8-A12T DYNC1H1 SNP Missense_Mutation 14 102496269 G C 33 79 BRCA TCGA-C8-A12T AHNAK2 SNP Silent 14 105409722 G A 39 38 BRCA TCGA-C8-A12T AHNAK2 SNP Missense_Mutation 14 105420515 C T 30 36 BRCA TCGA-C8-A12T NDRG2 SNP Missense_Mutation 14 21486365 G C 45 93 BRCA TCGA-C8-A12T MYH7 SNP Missense_Mutation 14 23884421 C T 27 100 BRCA TCGA-C8-A12T NOP9 SNP Missense_Mutation 14 24772295 G C 45 70 BRCA TCGA-C8-A12T SEC23A SNP Missense_Mutation 14 39545233 G A 35 100 BRCA TCGA-C8-A12T YLPM1 SNP Missense_Mutation 14 75265199 G A 33 70 BRCA TCGA-C8-A12T TMED10 SNP Missense_Mutation 14 75601659 G C 33 89 BRCA TCGA-C8-A12T RYR3 SNP Missense_Mutation 15 33988430 G A 41 73 BRCA TCGA-C8-A12T STARD9 DEL Frame_Shift_Del 15 42977168 G - 47 46 BRCA TCGA-C8-A12T AP4E1 SNP Nonsense_Mutation 15 51291329 C T 29 78 BRCA TCGA-C8-A12T ZNF609 SNP Silent 15 64966802 C T 29 62 BRCA TCGA-C8-A12T DET1 SNP Missense_Mutation 15 89056368 G C 33 60 BRCA TCGA-C8-A12T TEKT5 SNP Silent 16 10783850 C T 32 53 BRCA TCGA-C8-A12T TBC1D24 SNP Silent 16 2549400 C T 29 64 BRCA TCGA-C8-A12T GLYR1 SNP Missense_Mutation 16 4861729 C T 31 100 BRCA TCGA-C8-A12T GPR114 SNP Missense_Mutation 16 57597076 A C 6 47 BRCA TCGA-C8-A12T PIGQ SNP Nonsense_Mutation 16 633504 C G 29 51 BRCA TCGA-C8-A12T CTCF SNP Nonsense_Mutation 16 67655431 G T 33 100 BRCA TCGA-C8-A12T PLA2G15 SNP Silent 16 68283257 C A 32 48 BRCA TCGA-C8-A12T ZFHX3 SNP Nonsense_Mutation 16 72827828 G C 45 100 BRCA TCGA-C8-A12T ZFHX3 SNP Missense_Mutation 16 72832052 G A 33 87 BRCA TCGA-C8-A12T CMIP SNP Missense_Mutation 16 81739122 C T 31 72 BRCA TCGA-C8-A12T MYH3 SNP Silent 17 10558307 G A 37 51 BRCA TCGA-C8-A12T ARHGAP44 SNP Silent 17 12799747 G A 45 60 BRCA TCGA-C8-A12T PRPF8 SNP Missense_Mutation 17 1578489 G A 42 100 BRCA TCGA-C8-A12T STAT5B SNP Splice_Site 17 40376887 C T 32 95 BRCA TCGA-C8-A12T BRCA1 SNP Missense_Mutation 17 41243518 C G 29 57 BRCA TCGA-C8-A12T PLSCR3 SNP Missense_Mutation 17 7296197 G C 33 57 BRCA TCGA-C8-A12T ARHGEF15 SNP Missense_Mutation 17 8215677 C T 30 62 BRCA TCGA-C8-A12T ENSG00000235297 SNP Missense_Mutation 18 72057461 G C 45 51 BRCA TCGA-C8-A12T PDE4A SNP Silent 19 10568682 C T 29 64 BRCA TCGA-C8-A12T TNPO2 SNP Nonsense_Mutation 19 12830080 G C 45 94 BRCA TCGA-C8-A12T UNC13A SNP Silent 19 17756583 G A 38 15 BRCA TCGA-C8-A12T ELL SNP Missense_Mutation 19 18561569 C A 31 83 BRCA TCGA-C8-A12T TULP2 SNP Silent 19 49391390 G A 40 58 BRCA TCGA-C8-A12T ZNF841 SNP Nonsense_Mutation 19 52580298 G A 45 53 BRCA TCGA-C8-A12T TSEN34 SNP Missense_Mutation 19 54695795 C T 31 56 BRCA TCGA-C8-A12T OR7G3 SNP Missense_Mutation 19 9237482 C T 19 33 BRCA TCGA-C8-A12T OR7E24 SNP Silent 19 9362661 C T 17 50 BRCA TCGA-C8-A12T ZNF560 SNP Silent 19 9584909 C G 29 54 BRCA TCGA-C8-A12T NEB SNP Splice_site 2 152350381 C G 18 68 BRCA TCGA-C8-A12T FAM49A SNP Silent 2 16740779 G C 33 56 BRCA TCGA-C8-A12T UBR3 SNP Nonsense_Mutation 2 170732316 C G 29 76 BRCA TCGA-C8-A12T CLK1 SNP Missense_Mutation 2 201722462 G C 45 84 BRCA TCGA-C8-A12T VRK2 SNP Missense_Mutation 2 58350248 G C 33 100 BRCA TCGA-C8-A12T TMEM131 SNP Missense_Mutation 2 98543924 C G 32 73 BRCA TCGA-C8-A12T CSTL1 SNP Silent 20 23424675 G A 45 52 BRCA TCGA-C8-A12T DNTTIP1 SNP Missense_Mutation 20 44429770 C A 30 67 BRCA TCGA-C8-A12T COL20A1 SNP Silent 20 61936827 C T 26 53 BRCA TCGA-C8-A12T TRPM2 SNP Silent 21 45811190 C T 29 64 BRCA TCGA-C8-A12T SPECC1L SNP Missense_Mutation 22 24698308 G A 43 83 BRCA TCGA-C8-A12T TTC28 SNP Missense_Mutation 22 28503882 G C 45 57 BRCA TCGA-C8-A12T ASCC2 SNP Silent 22 30189366 G A 40 44 BRCA TCGA-C8-A12T DEPDC5 SNP Missense_Mutation 22 32272223 G T 33 83 BRCA TCGA-C8-A12T SLC16A8 SNP Silent 22 38474563 G A 38 33 BRCA TCGA-C8-A12T HTATSF1 SNP Missense_Mutation 23 135593306 G A 45 72 BRCA TCGA-C8-A12T MXRA5 SNP Missense_Mutation 23 3239762 C T 32 55 BRCA TCGA-C8-A12T CASK SNP Nonsense_Mutation 23 41646461 G C 45 95 BRCA TCGA-C8-A12T SSX3 SNP Missense_Mutation 23 48214153 G C 33 51 BRCA TCGA-C8-A12T CACNA1F SNP Missense_Mutation 23 49083480 G C 45 71 BRCA TCGA-C8-A12T FOXO4 SNP Missense_Mutation 23 70321046 T G 59 49 BRCA TCGA-C8-A12T ROPN1B SNP Missense_Mutation 3 125701143 G A 45 63 BRCA TCGA-C8-A12T DNAJC13 SNP Missense_Mutation 3 132231857 G C 45 98 BRCA TCGA-C8-A12T MSL2 SNP Missense_Mutation 3 135871199 G A 33 82 BRCA TCGA-C8-A12T TBC1D5 SNP Missense_Mutation 3 17208372 C G 32 96 BRCA TCGA-C8-A12T PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-C8-A12T TRA2B SNP Missense_Mutation 3 185639893 T A 52 79 BRCA TCGA-C8-A12T OSBPL10 SNP Missense_Mutation 3 31712404 G C 33 87 BRCA TCGA-C8-A12T GABRR3 SNP Silent 3 97731406 A G 13 58 BRCA TCGA-C8-A12T PCDH18 SNP Missense_Mutation 4 138442365 G A 45 72 BRCA TCGA-C8-A12T PCDH18 SNP Silent 4 138452906 G A 33 77 BRCA TCGA-C8-A12T FAM160A1 SNP Silent 4 152499180 G A 33 71 BRCA TCGA-C8-A12T SLIT2 SNP Missense_Mutation 4 20487849 G T 33 85 BRCA TCGA-C8-A12T ENSG00000205794 SNP Missense_Mutation 4 40044934 G C 33 64 BRCA TCGA-C8-A12T GK2 SNP Nonsense_Mutation 4 80329028 G T 48 54 BRCA TCGA-C8-A12T ZRSR1 SNP Missense_Mutation 5 112228531 G A 41 58 BRCA TCGA-C8-A12T ADAMTS2 SNP Silent 5 178699937 G A 37 40 BRCA TCGA-C8-A12T EGFLAM SNP Missense_Mutation 5 38407978 C G 29 79 BRCA TCGA-C8-A12T DHX29 SNP Silent 5 54565406 G A 41 54 BRCA TCGA-C8-A12T AMD1 SNP Missense_Mutation 6 111214197 G A 45 97 BRCA TCGA-C8-A12T PERP SNP Missense_Mutation 6 138417551 G C 35 77 BRCA TCGA-C8-A12T POM121L2 SNP Missense_Mutation 6 27278941 G T 44 51 BRCA TCGA-C8-A12T EYS SNP Missense_Mutation 6 65300723 C T 29 48 BRCA TCGA-C8-A12T PHIP SNP Missense_Mutation 6 79688311 C T 29 94 BRCA TCGA-C8-A12T MUC17 SNP Nonsense_Mutation 7 100679922 C G 29 57 BRCA TCGA-C8-A12T MUC17 SNP Missense_Mutation 7 100681224 C G 32 53 BRCA TCGA-C8-A12T DNAJC2 SNP Missense_Mutation 7 102982252 C G 32 83 BRCA TCGA-C8-A12T THAP5 SNP Missense_Mutation 7 108205254 C G 32 49 BRCA TCGA-C8-A12T LRGUK SNP Splice_Site 7 133886232 G A 33 83 BRCA TCGA-C8-A12T ABCB8 SNP Missense_Mutation 7 150731848 C A 25 94 BRCA TCGA-C8-A12T ABCB5 SNP Silent 7 20793123 T C 59 50 BRCA TCGA-C8-A12T CARD11 SNP Missense_Mutation 7 2946355 C T 19 50 BRCA TCGA-C8-A12T MAGI2 SNP Missense_Mutation 7 77789588 C T 30 97 BRCA TCGA-C8-A12T TSTA3 SNP Silent 8 144696346 G A 45 80 BRCA TCGA-C8-A12T ZDHHC2 SNP Missense_Mutation 8 17067946 G A 45 98 BRCA TCGA-C8-A12T XPO7 SNP Missense_Mutation 8 21861537 G C 33 97 BRCA TCGA-C8-A12T PTK2B SNP Missense_Mutation 8 27296585 G C 45 83 BRCA TCGA-C8-A12T PXDNL SNP Silent 8 52321106 G T 46 55 BRCA TCGA-C8-A12T ST18 SNP Missense_Mutation 8 53071507 C A 24 86 BRCA TCGA-C8-A12T CHD7 SNP Missense_Mutation 8 61693766 G C 33 62 BRCA TCGA-C8-A12T OR13C2 SNP Missense_Mutation 9 107367609 C G 32 60 BRCA TCGA-C8-A12T AKNA SNP Missense_Mutation 9 117099531 T G 59 22 BRCA TCGA-C8-A12T DBH SNP Missense_Mutation 9 136516800 C G 17 55 BRCA TCGA-C8-A12T ANKRD18A SNP Missense_Mutation 9 38575638 C T 29 47 BRCA TCGA-C8-A12U MAGI3 SNP Nonsense_Mutation 1 114184725 C G 29 84 BRCA TCGA-C8-A12U ASH1L DEL Splice_site 1 155348180 TCT - 50 91 BRCA TCGA-C8-A12U SCYL3 SNP Missense_Mutation 1 169823868 T C 50 52 BRCA TCGA-C8-A12U MORN1 SNP Missense_Mutation 1 2268205 G A 39 71 BRCA TCGA-C8-A12U ZBTB40 SNP Missense_Mutation 1 22839582 C T 26 98 BRCA TCGA-C8-A12U RYR2 SNP Silent 1 237608817 T C 61 51 BRCA TCGA-C8-A12U MAP3K6 SNP Nonsense_Mutation 1 27685006 G A 39 62 BRCA TCGA-C8-A12U CHD5 SNP Silent 1 6209375 G A 35 51 BRCA TCGA-C8-A12U PDE4B SNP Missense_Mutation 1 66838015 T C 52 90 BRCA TCGA-C8-A12U NCAM1 SNP Missense_Mutation 11 113130919 G A 40 64 BRCA TCGA-C8-A12U CCDC73 SNP Silent 11 32636346 C T 23 51 BRCA TCGA-C8-A12U YIF1A SNP Silent 11 66055109 G T 43 39 BRCA TCGA-C8-A12U TRIM64B SNP Missense_Mutation 11 89604106 C A 30 58 BRCA TCGA-C8-A12U CCDC82 SNP Missense_Mutation 11 96117839 C A 29 83 BRCA TCGA-C8-A12U ALDH1L2 SNP Nonsense_Mutation 12 105443688 G A 45 100 BRCA TCGA-C8-A12U CCNT1 SNP Missense_Mutation 12 49089558 C T 27 100 BRCA TCGA-C8-A12U SMARCC2 SNP Missense_Mutation 12 56558356 C T 18 71 BRCA TCGA-C8-A12U VWF SNP Splice_site 12 6080875 C G 22 84 BRCA TCGA-C8-A12U RPS6KA5 SNP Missense_Mutation 14 91341643 C T 28 77 BRCA TCGA-C8-A12U LOC100288367 SNP Missense_Mutation 15 84949664 A G 7 53 BRCA TCGA-C8-A12U DNAH9 SNP Missense_Mutation 17 11572453 C T 23 97 BRCA TCGA-C8-A12U LLGL1 SNP Splice_site 17 18145941 G C 43 63 BRCA TCGA-C8-A12U AKAP1 SNP Missense_Mutation 17 55183615 G C 34 54 BRCA TCGA-C8-A12U AKAP1 SNP Missense_Mutation 17 55193475 C T 19 71 BRCA TCGA-C8-A12U TCF4 SNP Silent 18 52896202 G A 40 53 BRCA TCGA-C8-A12U ZSWIM4 SNP Missense_Mutation 19 13936517 T G 55 69 BRCA TCGA-C8-A12U ANKRD27 SNP Silent 19 33134217 G A 40 43 BRCA TCGA-C8-A12U CHST8 SNP Missense_Mutation 19 34263265 G A 38 61 BRCA TCGA-C8-A12U EHD2 SNP Missense_Mutation 19 48239666 C T 22 91 BRCA TCGA-C8-A12U RANBP3 SNP Missense_Mutation 19 5925701 G C 44 50 BRCA TCGA-C8-A12U L3MBTL1 SNP Splice_site 20 42164575 C T 23 75 BRCA TCGA-C8-A12U OSBPL2 SNP Missense_Mutation 20 60859166 T G 62 53 BRCA TCGA-C8-A12U BRD1 SNP Silent 22 50169791 G A 46 65 BRCA TCGA-C8-A12U SH3KBP1 SNP Silent 23 19854375 G A 44 68 BRCA TCGA-C8-A12U SSX6 SNP Missense_Mutation 23 47969636 C T 20 62 BRCA TCGA-C8-A12U MSN SNP Missense_Mutation 23 64955188 G A 47 82 BRCA TCGA-C8-A12U PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-C8-A12U LIPH SNP Splice_site 3 185252919 G A 40 56 BRCA TCGA-C8-A12U DBN1 SNP Missense_Mutation 5 176899140 T G 58 55 BRCA TCGA-C8-A12U CDH12 SNP Missense_Mutation 5 21802509 C G 32 64 BRCA TCGA-C8-A12U AKR1B1 SNP Nonsense_Mutation 7 134136358 C A 30 95 BRCA TCGA-C8-A12U AGAP3 SNP Missense_Mutation 7 150835325 C T 27 70 BRCA TCGA-C8-A12U RBM33 SNP Missense_Mutation 7 155532539 C T 22 49 BRCA TCGA-C8-A12U ERV3-1 SNP Missense_Mutation 7 64453178 C T 26 52 BRCA TCGA-C8-A12U CPSF1 SNP Missense_Mutation 8 145620395 C T 29 91 BRCA TCGA-C8-A12U CSGALNACT1 SNP Silent 8 19277864 C T 29 70 BRCA TCGA-C8-A12U EYA1 SNP Missense_Mutation 8 72234498 C T 21 100 BRCA TCGA-C8-A12V SYT6 SNP Silent 1 114640409 G A 44 59 BRCA TCGA-C8-A12V ILF2 SNP Missense_Mutation 1 153635526 C G 32 89 BRCA TCGA-C8-A12V CAMTA1 SNP Missense_Mutation 1 7792621 G A 35 62 BRCA TCGA-C8-A12V OPN4 SNP Splice_site 10 88416983 C T 25 47 BRCA TCGA-C8-A12V PKNOX2 SNP Missense_Mutation 11 125255595 G A 37 100 BRCA TCGA-C8-A12V SAAL1 INS In_Frame_Ins 11 18127530 - CCTCCT 6 33 BRCA TCGA-C8-A12V LOXL1 SNP Missense_Mutation 15 74239446 T C 53 87 BRCA TCGA-C8-A12V RPL3L SNP Missense_Mutation 16 2002953 G A 35 82 BRCA TCGA-C8-A12V CNTNAP4 SNP Missense_Mutation 16 76572213 C A 24 70 BRCA TCGA-C8-A12V CRX SNP Missense_Mutation 19 48342988 C A 24 75 BRCA TCGA-C8-A12V SSTR4 SNP Silent 20 23017092 G T 43 51 BRCA TCGA-C8-A12V NOL12 SNP Missense_Mutation 22 38082463 T G 56 74 BRCA TCGA-C8-A12V MFN1 SNP Splice_Site 3 179107927 G T 44 98 BRCA TCGA-C8-A12V NPR3 SNP Missense_Mutation 5 32786414 G C 39 95 BRCA TCGA-C8-A12V NUDT1 SNP Missense_Mutation 7 2290629 C T 19 39 BRCA TCGA-C8-A12V EXT1 SNP Missense_Mutation 8 118849379 G T 34 88 BRCA TCGA-C8-A12V ZFHX4 SNP Missense_Mutation 8 77618671 G A 37 83 BRCA TCGA-C8-A12W GON4L SNP Missense_Mutation 1 155823258 A G 15 69 BRCA TCGA-C8-A12W CD84 SNP Missense_Mutation 1 160519760 A T 11 42 BRCA TCGA-C8-A12W UBR4 SNP Silent 1 19481474 G A 37 52 BRCA TCGA-C8-A12W HIST3H3 SNP Missense_Mutation 1 228612911 G A 39 92 BRCA TCGA-C8-A12W PRPF38A SNP Missense_Mutation 1 52871475 A G 12 93 BRCA TCGA-C8-A12W WDR78 SNP Nonsense_Mutation 1 67299695 G A 40 74 BRCA TCGA-C8-A12W LRRC7 SNP Silent 1 70505050 C T 19 50 BRCA TCGA-C8-A12W AGRN SNP Silent 1 985341 G T 38 54 BRCA TCGA-C8-A12W C2CD3 SNP Silent 11 73814404 C T 27 52 BRCA TCGA-C8-A12W ITGA5 SNP Missense_Mutation 12 54799461 C T 19 27 BRCA TCGA-C8-A12W PPM1H SNP Silent 12 63042362 G A 48 72 BRCA TCGA-C8-A12W CD163L1 SNP Missense_Mutation 12 7521559 G T 48 49 BRCA TCGA-C8-A12W IFT88 SNP Missense_Mutation 13 21165111 G T 33 63 BRCA TCGA-C8-A12W SKOR1 SNP Silent 15 68118406 G A 40 51 BRCA TCGA-C8-A12W SMG1 SNP Missense_Mutation 16 18830918 G T 42 100 BRCA TCGA-C8-A12W CD19 SNP Silent 16 28948420 G A 39 62 BRCA TCGA-C8-A12W CCDC135 SNP Missense_Mutation 16 57752290 G A 33 55 BRCA TCGA-C8-A12W NOS2 SNP Missense_Mutation 17 26087691 G T 39 54 BRCA TCGA-C8-A12W CDK12 SNP Missense_Mutation 17 37682239 C T 22 83 BRCA TCGA-C8-A12W TP53 SNP Missense_Mutation 17 7578272 G A 46 97 BRCA TCGA-C8-A12W IRF3 SNP Missense_Mutation 19 50163080 G A 40 57 BRCA TCGA-C8-A12W TTN SNP Missense_Mutation 2 179477701 T C 50 72 BRCA TCGA-C8-A12W TTN SNP Silent 2 179611635 G A 39 25 BRCA TCGA-C8-A12W TRIB3 SNP Silent 20 377082 C T 27 7 BRCA TCGA-C8-A12W BRWD1 SNP Missense_Mutation 21 40570878 A C 11 77 BRCA TCGA-C8-A12W KIAA1210 SNP Missense_Mutation 23 118223625 C T 23 33 BRCA TCGA-C8-A12W GAB3 SNP Silent 23 153924213 G A 40 52 BRCA TCGA-C8-A12W NLGN3 SNP Missense_Mutation 23 70375070 G A 39 95 BRCA TCGA-C8-A12W COL6A6 SNP Missense_Mutation 3 130313159 G A 40 37 BRCA TCGA-C8-A12W CPA3 SNP Silent 3 148601470 G A 37 48 BRCA TCGA-C8-A12W SMC4 SNP Missense_Mutation 3 160146661 T G 49 94 BRCA TCGA-C8-A12W WDR49 SNP Missense_Mutation 3 167223187 T C 50 61 BRCA TCGA-C8-A12W SKIL SNP Silent 3 170078980 G T 40 17 BRCA TCGA-C8-A12W KLHDC8B SNP Missense_Mutation 3 49212375 G C 48 81 BRCA TCGA-C8-A12W ITIH3 SNP Missense_Mutation 3 52833413 T A 62 69 BRCA TCGA-C8-A12W CACNA2D3 SNP Missense_Mutation 3 55107854 C T 27 65 BRCA TCGA-C8-A12W CNTN3 SNP Splice_Site 3 74418526 T C 53 88 BRCA TCGA-C8-A12W ROBO1 SNP Missense_Mutation 3 78666899 C G 17 99 BRCA TCGA-C8-A12W CXCL6 SNP Missense_Mutation 4 74702958 C T 23 75 BRCA TCGA-C8-A12W ATOH1 SNP Missense_Mutation 4 94751069 C T 31 92 BRCA TCGA-C8-A12W PCDHB7 SNP Missense_Mutation 5 140553707 C A 28 83 BRCA TCGA-C8-A12W F2RL1 SNP Silent 5 76128711 C T 19 49 BRCA TCGA-C8-A12W CCDC136 SNP Missense_Mutation 7 128452972 G A 37 65 BRCA TCGA-C8-A12W ZER1 SNP Missense_Mutation 9 131513756 G A 39 91 BRCA TCGA-C8-A12W PTCH1 SNP Missense_Mutation 9 98209699 G A 37 49 BRCA TCGA-C8-A12X FBXO6 SNP Silent 1 11732060 G A 39 3 BRCA TCGA-C8-A12X ESRRG SNP Missense_Mutation 1 216850754 G T 43 100 BRCA TCGA-C8-A12X MARK1 SNP Missense_Mutation 1 220835233 A G 11 93 BRCA TCGA-C8-A12X HDAC1 SNP Splice_site 1 32798618 G A 43 68 BRCA TCGA-C8-A12X CSMD2 SNP Missense_Mutation 1 34254255 G A 35 76 BRCA TCGA-C8-A12X TMEM53 SNP Missense_Mutation 1 45120323 C T 19 51 BRCA TCGA-C8-A12X CACHD1 SNP Missense_Mutation 1 65124496 C T 23 78 BRCA TCGA-C8-A12X MUC6 SNP Nonsense_Mutation 11 1018368 G T 45 53 BRCA TCGA-C8-A12X ZNF202 SNP Missense_Mutation 11 123596728 T A 58 65 BRCA TCGA-C8-A12X ROBO4 SNP Missense_Mutation 11 124757090 C G 26 50 BRCA TCGA-C8-A12X SAA1 SNP Missense_Mutation 11 18288513 G A 37 54 BRCA TCGA-C8-A12X MADD SNP Missense_Mutation 11 47306022 A T 10 58 BRCA TCGA-C8-A12X RPH3A SNP Missense_Mutation 12 113306329 C A 24 73 BRCA TCGA-C8-A12X OASL SNP Missense_Mutation 12 121461839 C T 17 78 BRCA TCGA-C8-A12X DNAH10 SNP Missense_Mutation 12 124349182 G A 41 100 BRCA TCGA-C8-A12X KRT81 SNP Silent 12 52681497 C T 32 67 BRCA TCGA-C8-A12X PSMC6 SNP Nonsense_Mutation 14 53184856 T G 61 88 BRCA TCGA-C8-A12X WDR72 SNP Missense_Mutation 15 53908085 T G 56 71 BRCA TCGA-C8-A12X WDR72 SNP Missense_Mutation 15 54015098 G A 38 72 BRCA TCGA-C8-A12X TBC1D21 SNP Nonsense_Mutation 15 74177364 G T 45 64 BRCA TCGA-C8-A12X GSPT1 SNP Missense_Mutation 16 11976892 G A 34 93 BRCA TCGA-C8-A12X KIAA0182 SNP Missense_Mutation 16 85688513 C T 22 68 BRCA TCGA-C8-A12X STH SNP Missense_Mutation 17 44076959 G T 48 40 BRCA TCGA-C8-A12X LPPR2 SNP Splice_Site 19 11474496 G C 36 74 BRCA TCGA-C8-A12X IKZF2 SNP Missense_Mutation 2 213872500 G T 44 71 BRCA TCGA-C8-A12X DPYSL5 SNP Missense_Mutation 2 27154529 C T 31 65 BRCA TCGA-C8-A12X CLIP4 SNP Nonsense_Mutation 2 29386783 A T 3 87 BRCA TCGA-C8-A12X PLXNA3 SNP Silent 23 153695619 C T 23 33 BRCA TCGA-C8-A12X MAGEB4 SNP Silent 23 30260918 A G 4 44 BRCA TCGA-C8-A12X CCNB3 SNP Silent 23 50090648 A G 6 45 BRCA TCGA-C8-A12X XRN1 SNP Missense_Mutation 3 142123820 A T 16 46 BRCA TCGA-C8-A12X MEPE SNP Silent 4 88766794 C T 19 48 BRCA TCGA-C8-A12X GPRIN3 DEL Frame_Shift_Del 4 90170752 TGGTTTCTCAGGTTGC - 63 48 BRCA TCGA-C8-A12X ATP10B SNP Missense_Mutation 5 160059168 A G 11 49 BRCA TCGA-C8-A12X C5orf25 SNP Missense_Mutation 5 175717093 G A 34 65 BRCA TCGA-C8-A12X ISL1 SNP Missense_Mutation 5 50687262 C T 28 100 BRCA TCGA-C8-A12X IL6ST SNP Missense_Mutation 5 55251984 T C 52 48 BRCA TCGA-C8-A12X CAP2 SNP Missense_Mutation 6 17421790 G T 42 60 BRCA TCGA-C8-A12X ZNF786 SNP Silent 7 148769113 G T 39 56 BRCA TCGA-C8-A12X ABCB5 SNP Missense_Mutation 7 20721141 G A 39 89 BRCA TCGA-C8-A12X VPS41 SNP Missense_Mutation 7 38768370 T C 63 89 BRCA TCGA-C8-A12X ABCA13 SNP Missense_Mutation 7 48314760 C T 31 58 BRCA TCGA-C8-A12X HEPACAM2 SNP Nonsense_Mutation 7 92826860 G C 45 82 BRCA TCGA-C8-A12X PREX2 SNP Missense_Mutation 8 69031699 C G 29 95 BRCA TCGA-C8-A12X PTBP3 SNP Silent 9 115038244 C T 27 34 BRCA TCGA-C8-A12X VLDLR SNP Missense_Mutation 9 2643294 G A 38 51 BRCA TCGA-C8-A12Y C1orf194 SNP Missense_Mutation 1 109649198 T C 60 59 BRCA TCGA-C8-A12Y LAMC1 SNP Missense_Mutation 1 183086559 C T 31 54 BRCA TCGA-C8-A12Y SLC30A10 SNP Missense_Mutation 1 220089061 T A 57 48 BRCA TCGA-C8-A12Y ZSWIM5 SNP Silent 1 45501826 G A 40 42 BRCA TCGA-C8-A12Y CC2D1B SNP Missense_Mutation 1 52820569 C T 23 98 BRCA TCGA-C8-A12Y FRMPD2 SNP Silent 10 49431219 G T 35 69 BRCA TCGA-C8-A12Y NDUFS3 SNP Missense_Mutation 11 47605938 G T 45 99 BRCA TCGA-C8-A12Y A2ML1 SNP Silent 12 8975820 C A 23 45 BRCA TCGA-C8-A12Y FLT1 SNP Silent 13 29005430 G A 39 44 BRCA TCGA-C8-A12Y RYR3 SNP Missense_Mutation 15 33873763 G A 40 71 BRCA TCGA-C8-A12Y USP14 SNP Silent 18 210024 T C 63 74 BRCA TCGA-C8-A12Y DSC3 SNP Nonsense_Mutation 18 28574329 G A 37 49 BRCA TCGA-C8-A12Y NOTCH3 SNP Silent 19 15281153 C T 27 38 BRCA TCGA-C8-A12Y SUPT5H SNP Missense_Mutation 19 39949691 G A 38 98 BRCA TCGA-C8-A12Y ZFP28 SNP Missense_Mutation 19 57061548 C T 25 41 BRCA TCGA-C8-A12Y RAB3GAP1 SNP Splice_Site 2 135848702 T C 57 78 BRCA TCGA-C8-A12Y YTHDF1 SNP Silent 20 61835025 G A 40 41 BRCA TCGA-C8-A12Y SH3KBP1 SNP Missense_Mutation 23 19568118 G A 38 57 BRCA TCGA-C8-A12Y MSL2 SNP Missense_Mutation 3 135870774 T C 49 54 BRCA TCGA-C8-A12Y PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-C8-A12Y C6 SNP Missense_Mutation 5 41149444 C T 27 50 BRCA TCGA-C8-A12Y EDN1 SNP Silent 6 12294560 G T 41 44 BRCA TCGA-C8-A12Y TFAP2B SNP Missense_Mutation 6 50811097 A G 7 67 BRCA TCGA-C8-A12Y TEX15 SNP Missense_Mutation 8 30705650 C T 28 49 BRCA TCGA-C8-A12Y KIAA0146 SNP Missense_Mutation 8 48508402 G A 46 51 BRCA TCGA-C8-A12Y PLEKHF2 DEL Frame_Shift_Del 8 96166752 TTGTCAGAAAGCAAAA - 60 56 BRCA TCGA-C8-A12Y COL5A1 SNP Splice_site 9 137630360 C T 27 80 BRCA TCGA-C8-A12Y VLDLR SNP Missense_Mutation 9 2643403 G A 40 79 BRCA TCGA-C8-A12Y SLC35D2 INS Splice_Site 9 99126743 - A 61 72 BRCA TCGA-C8-A12Z FLG SNP Missense_Mutation 1 152286754 C G 32 51 BRCA TCGA-C8-A12Z ATP8B2 SNP Missense_Mutation 1 154313476 C T 19 98 BRCA TCGA-C8-A12Z ANGPTL1 SNP Silent 1 178834294 T G 58 52 BRCA TCGA-C8-A12Z ANGPTL1 SNP Missense_Mutation 1 178834752 G C 35 49 BRCA TCGA-C8-A12Z ABCD3 SNP Missense_Mutation 1 94946144 C T 32 99 BRCA TCGA-C8-A12Z WDFY4 SNP Silent 10 49943941 C T 19 38 BRCA TCGA-C8-A12Z C10orf12 SNP Missense_Mutation 10 98742267 G A 33 55 BRCA TCGA-C8-A12Z NUP98 SNP Missense_Mutation 11 3700873 G A 38 83 BRCA TCGA-C8-A12Z DAGLA SNP Silent 11 61508016 C G 21 68 BRCA TCGA-C8-A12Z STAT2 SNP Missense_Mutation 12 56748596 T C 55 75 BRCA TCGA-C8-A12Z MYCBP2 SNP Missense_Mutation 13 77817214 T C 59 74 BRCA TCGA-C8-A12Z DHRS4 SNP Missense_Mutation 14 24424404 G A 41 59 BRCA TCGA-C8-A12Z RYR3 SNP Silent 15 33954810 G A 37 40 BRCA TCGA-C8-A12Z PLA2G4F SNP Missense_Mutation 15 42436738 G A 39 78 BRCA TCGA-C8-A12Z MPV17L SNP Missense_Mutation 16 15501892 G C 45 84 BRCA TCGA-C8-A12Z PAPD5 SNP Missense_Mutation 16 50259141 C G 32 95 BRCA TCGA-C8-A12Z JUP SNP Missense_Mutation 17 39777865 C T 31 81 BRCA TCGA-C8-A12Z GH2 SNP Silent 17 61958446 G C 33 71 BRCA TCGA-C8-A12Z ACAP1 SNP Silent 17 7251307 G A 45 52 BRCA TCGA-C8-A12Z TP53 SNP Missense_Mutation 17 7574002 C G 31 52 BRCA TCGA-C8-A12Z TRIP10 INS Frame_Shift_Ins 19 6751165 - A 41 58 BRCA TCGA-C8-A12Z PUM2 SNP Missense_Mutation 2 20511409 C T 29 100 BRCA TCGA-C8-A12Z ATG16L1 SNP Missense_Mutation 2 234164823 C T 21 68 BRCA TCGA-C8-A12Z AGAP1 SNP Missense_Mutation 2 236715952 G A 39 99 BRCA TCGA-C8-A12Z IMMT SNP Missense_Mutation 2 86397875 C G 29 51 BRCA TCGA-C8-A12Z MX1 SNP Missense_Mutation 21 42807920 G C 41 96 BRCA TCGA-C8-A12Z MKL1 SNP Nonsense_Mutation 22 40807871 C A 30 49 BRCA TCGA-C8-A12Z ARSA SNP Missense_Mutation 22 51064659 C T 23 62 BRCA TCGA-C8-A12Z RBMXL3 SNP Missense_Mutation 23 114425988 T C 55 33 BRCA TCGA-C8-A12Z GDI1 SNP Missense_Mutation 23 153668757 G A 38 94 BRCA TCGA-C8-A12Z ZMYM3 SNP Missense_Mutation 23 70472831 G A 43 65 BRCA TCGA-C8-A12Z ACAD11 SNP Missense_Mutation 3 132277859 T C 52 52 BRCA TCGA-C8-A12Z ITGA9 SNP Missense_Mutation 3 37778398 G A 45 66 BRCA TCGA-C8-A12Z BANK1 SNP Missense_Mutation 4 102951292 G A 45 42 BRCA TCGA-C8-A12Z CLCN3 SNP Missense_Mutation 4 170628037 C T 20 100 BRCA TCGA-C8-A12Z FRYL SNP Missense_Mutation 4 48584566 A C 16 90 BRCA TCGA-C8-A12Z PCDHB10 SNP Missense_Mutation 5 140572714 G A 41 60 BRCA TCGA-C8-A12Z C5orf42 SNP Missense_Mutation 5 37169245 C G 32 48 BRCA TCGA-C8-A12Z PIK3R1 DEL In_Frame_Del 5 67591127 AGA - 11 77 BRCA TCGA-C8-A12Z CD83 SNP Missense_Mutation 6 14131848 C T 26 52 BRCA TCGA-C8-A12Z HIST1H2AK SNP Missense_Mutation 6 27805754 C T 29 92 BRCA TCGA-C8-A12Z FUT9 SNP Silent 6 96651553 C T 25 72 BRCA TCGA-C8-A12Z METTL2B SNP Silent 7 128141820 A G 2 46 BRCA TCGA-C8-A12Z EPHA1 SNP Missense_Mutation 7 143104718 G A 41 69 BRCA TCGA-C8-A12Z ENSG00000214754 SNP Missense_Mutation 7 47093148 G T 39 54 BRCA TCGA-C8-A12Z RGS22 SNP Nonsense_Mutation 8 100994227 G A 46 92 BRCA TCGA-C8-A12Z PRRC2B SNP Missense_Mutation 9 134319670 G A 40 95 BRCA TCGA-C8-A130 DUSP27 SNP Silent 1 167095568 C T 19 49 BRCA TCGA-C8-A130 DNAH14 SNP Splice_Site 1 225568025 G A 44 79 BRCA TCGA-C8-A130 PTCHD3 SNP Silent 10 27702625 C T 25 54 BRCA TCGA-C8-A130 XRRA1 SNP Missense_Mutation 11 74570222 A C 3 75 BRCA TCGA-C8-A130 NOX4 SNP Missense_Mutation 11 89106652 A G 7 52 BRCA TCGA-C8-A130 CCDC91 SNP Missense_Mutation 12 28459679 A C 7 72 BRCA TCGA-C8-A130 METAP2 SNP Nonsense_Mutation 12 95905673 A T 9 93 BRCA TCGA-C8-A130 DCUN1D2 SNP Missense_Mutation 13 114128499 A G 2 87 BRCA TCGA-C8-A130 TBC1D4 SNP Missense_Mutation 13 75936260 C T 31 81 BRCA TCGA-C8-A130 OR4K2 SNP Silent 14 20345239 G T 48 53 BRCA TCGA-C8-A130 NRXN3 SNP Missense_Mutation 14 79933659 G A 40 89 BRCA TCGA-C8-A130 SPRED1 SNP Missense_Mutation 15 38591723 G A 40 57 BRCA TCGA-C8-A130 ISLR SNP Missense_Mutation 15 74468053 T C 59 65 BRCA TCGA-C8-A130 TMC5 SNP Silent 16 19481012 G A 36 51 BRCA TCGA-C8-A130 TP53 DEL Frame_Shift_Del 17 7578538 T - 60 89 BRCA TCGA-C8-A130 ELP2 SNP Missense_Mutation 18 33721133 G C 33 48 BRCA TCGA-C8-A130 KRI1 SNP Silent 19 10671742 G A 39 26 BRCA TCGA-C8-A130 ACP5 SNP Missense_Mutation 19 11685975 G A 40 36 BRCA TCGA-C8-A130 HAUS5 SNP Missense_Mutation 19 36110392 C T 23 56 BRCA TCGA-C8-A130 WDR33 SNP Missense_Mutation 2 128463985 C T 23 89 BRCA TCGA-C8-A130 TRAK2 SNP Silent 2 202245617 G C 33 63 BRCA TCGA-C8-A130 SPHKAP SNP Missense_Mutation 2 228883499 C A 31 50 BRCA TCGA-C8-A130 ENSG00000205011 SNP Missense_Mutation 2 48757097 C T 31 52 BRCA TCGA-C8-A130 CRKL SNP Missense_Mutation 22 21272296 A G 7 88 BRCA TCGA-C8-A130 MYO18B SNP Missense_Mutation 22 26422713 G A 39 83 BRCA TCGA-C8-A130 BPIFC SNP Missense_Mutation 22 32815386 C T 27 63 BRCA TCGA-C8-A130 LUZP4 SNP Silent 23 114524334 G A 40 61 BRCA TCGA-C8-A130 BRCC3 SNP Missense_Mutation 23 154317544 G A 38 80 BRCA TCGA-C8-A130 CFP SNP Silent 23 47489181 G C 43 52 BRCA TCGA-C8-A130 KIF4A SNP Silent 23 69510350 G T 46 63 BRCA TCGA-C8-A130 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-C8-A130 MAGI1 SNP Missense_Mutation 3 65342480 C T 23 48 BRCA TCGA-C8-A130 KIAA0922 SNP Missense_Mutation 4 154547305 G T 36 45 BRCA TCGA-C8-A130 DBN1 SNP Splice_Site 5 176885058 C G 18 68 BRCA TCGA-C8-A130 HACE1 SNP Silent 6 105244542 G C 41 41 BRCA TCGA-C8-A130 HIST1H3C SNP Missense_Mutation 6 26045726 G C 38 97 BRCA TCGA-C8-A130 ZKSCAN4 SNP Silent 6 28214862 C T 29 57 BRCA TCGA-C8-A130 KIFC2 SNP Missense_Mutation 8 145692700 C T 31 48 BRCA TCGA-C8-A130 MFHAS1 SNP Missense_Mutation 8 8748257 G A 38 56 BRCA TCGA-C8-A130 PSIP1 SNP Missense_Mutation 9 15469016 G A 45 98 BRCA TCGA-C8-A131 SYPL2 SNP Silent 1 110018244 C T 27 49 BRCA TCGA-C8-A131 F5 SNP Splice_site 1 169541460 T G 56 76 BRCA TCGA-C8-A131 QSOX1 SNP Silent 1 180151338 C T 27 54 BRCA TCGA-C8-A131 PGBD5 SNP Missense_Mutation 1 230503869 G T 33 53 BRCA TCGA-C8-A131 ACTN2 DEL Frame_Shift_Del 1 236902735 A - 11 92 BRCA TCGA-C8-A131 CEP170 SNP Missense_Mutation 1 243329334 C T 31 94 BRCA TCGA-C8-A131 SSX2IP SNP Missense_Mutation 1 85135415 C A 29 59 BRCA TCGA-C8-A131 PDCD11 SNP Silent 10 105179384 C T 29 56 BRCA TCGA-C8-A131 MYO3A SNP Silent 10 26243835 C T 17 68 BRCA TCGA-C8-A131 PCSK7 SNP Missense_Mutation 11 117089867 C A 19 50 BRCA TCGA-C8-A131 KDM4E SNP Missense_Mutation 11 94759830 G T 42 60 BRCA TCGA-C8-A131 TAS2R31 SNP Missense_Mutation 12 11183883 C G 17 44 BRCA TCGA-C8-A131 TBX3 DEL Frame_Shift_Del 12 115118711 G - 47 60 BRCA TCGA-C8-A131 KRAS SNP Missense_Mutation 12 25398284 C A 18 99 BRCA TCGA-C8-A131 NR4A1 SNP Missense_Mutation 12 52451283 C T 31 51 BRCA TCGA-C8-A131 NOP2 SNP Missense_Mutation 12 6670928 C T 30 100 BRCA TCGA-C8-A131 AMDHD1 SNP Missense_Mutation 12 96360231 C A 17 100 BRCA TCGA-C8-A131 RCBTB1 SNP Missense_Mutation 13 50134175 C A 22 99 BRCA TCGA-C8-A131 DOCK9 SNP Missense_Mutation 13 99575591 C T 17 68 BRCA TCGA-C8-A131 TEP1 SNP Nonsense_Mutation 14 20873630 C A 30 86 BRCA TCGA-C8-A131 MYH7 DEL Frame_Shift_Del 14 23894523 G - 47 53 BRCA TCGA-C8-A131 AKAP6 SNP Missense_Mutation 14 33291628 G A 41 87 BRCA TCGA-C8-A131 ARNT2 SNP Silent 15 80750279 C T 31 41 BRCA TCGA-C8-A131 NTHL1 SNP Missense_Mutation 16 2090176 G A 41 51 BRCA TCGA-C8-A131 AARS SNP Silent 16 70295012 G A 34 85 BRCA TCGA-C8-A131 SUPT6H SNP Missense_Mutation 17 27001584 G A 45 98 BRCA TCGA-C8-A131 CACNA1G SNP Silent 17 48646591 C G 25 47 BRCA TCGA-C8-A131 TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-C8-A131 BAHCC1 SNP Missense_Mutation 17 79429821 G A 42 92 BRCA TCGA-C8-A131 RYR1 SNP Missense_Mutation 19 38951038 G A 38 94 BRCA TCGA-C8-A131 ZNF211 SNP Silent 19 58153270 G A 33 49 BRCA TCGA-C8-A131 PNPLA6 SNP Missense_Mutation 19 7601348 C T 18 92 BRCA TCGA-C8-A131 ZNF812 SNP Missense_Mutation 19 9800857 C T 22 56 BRCA TCGA-C8-A131 KLHL23 SNP Missense_Mutation 2 170592266 A C 6 78 BRCA TCGA-C8-A131 DPYSL5 SNP Silent 2 27169788 C T 31 50 BRCA TCGA-C8-A131 HAAO SNP Silent 2 42997323 G A 33 58 BRCA TCGA-C8-A131 WDR54 SNP Missense_Mutation 2 74651009 T C 64 77 BRCA TCGA-C8-A131 KIAA1211L SNP Silent 2 99443462 C T 31 39 BRCA TCGA-C8-A131 DOCK11 SNP Missense_Mutation 23 117699984 G A 40 98 BRCA TCGA-C8-A131 HAUS7 SNP Silent 23 152722094 G A 37 20 BRCA TCGA-C8-A131 PARP15 SNP Missense_Mutation 3 122345796 C A 28 46 BRCA TCGA-C8-A131 ZIC4 SNP Missense_Mutation 3 147113686 A G 10 91 BRCA TCGA-C8-A131 PIK3CA SNP Missense_Mutation 3 178916936 G A 40 97 BRCA TCGA-C8-A131 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-C8-A131 FAM131A SNP Missense_Mutation 3 184055444 A G 1 57 BRCA TCGA-C8-A131 CENPE SNP Missense_Mutation 4 104115811 C T 32 99 BRCA TCGA-C8-A131 ADAMTS19 SNP Missense_Mutation 5 129040021 G T 43 60 BRCA TCGA-C8-A131 PCDHB12 SNP Missense_Mutation 5 140589610 C G 17 41 BRCA TCGA-C8-A131 GRPEL2 DEL Frame_Shift_Del 5 148730599 C - 30 53 BRCA TCGA-C8-A131 IRX4 INS In_Frame_Ins 5 1878883 - TTT 30 90 BRCA TCGA-C8-A131 OSMR SNP Missense_Mutation 5 38904586 C A 20 40 BRCA TCGA-C8-A131 UNC5CL SNP Missense_Mutation 6 41000851 G A 38 59 BRCA TCGA-C8-A131 DCAF4L2 SNP Missense_Mutation 8 88885659 G T 47 56 BRCA TCGA-C8-A131 STXBP1 SNP Missense_Mutation 9 130430385 C T 25 67 BRCA TCGA-C8-A131 ADAMTSL2 SNP Missense_Mutation 9 136412259 G A 39 99 BRCA TCGA-C8-A131 GPSM1 SNP Silent 9 139231983 T C 60 82 BRCA TCGA-C8-A131 CHCHD9 SNP Silent 9 82006647 G A 36 53 BRCA TCGA-C8-A131 PTPRD SNP Missense_Mutation 9 8317921 G A 37 87 BRCA TCGA-C8-A132 FAM212B SNP Missense_Mutation 1 112270003 C T 19 71 BRCA TCGA-C8-A132 ZNF687 SNP Missense_Mutation 1 151261136 C A 21 97 BRCA TCGA-C8-A132 FLG2 SNP Silent 1 152324739 G A 40 40 BRCA TCGA-C8-A132 TBX19 SNP Splice_Site 1 168262381 G C 33 98 BRCA TCGA-C8-A132 CR1 SNP Missense_Mutation 1 207697209 A G 16 34 BRCA TCGA-C8-A132 C1orf173 SNP Missense_Mutation 1 75038620 G A 46 47 BRCA TCGA-C8-A132 HPS1 SNP Missense_Mutation 10 100195456 T G 56 75 BRCA TCGA-C8-A132 SORBS1 SNP Missense_Mutation 10 97157022 C T 32 87 BRCA TCGA-C8-A132 DNTT SNP Missense_Mutation 10 98078170 C G 29 54 BRCA TCGA-C8-A132 LRRK2 SNP Nonsense_Mutation 12 40687422 T A 61 64 BRCA TCGA-C8-A132 ATP11A SNP Missense_Mutation 13 113485824 A G 4 89 BRCA TCGA-C8-A132 GAS6 SNP Missense_Mutation 13 114535690 C G 32 53 BRCA TCGA-C8-A132 MYH6 SNP Missense_Mutation 14 23863422 G A 40 98 BRCA TCGA-C8-A132 SKOR1 SNP Missense_Mutation 15 68122564 G A 45 72 BRCA TCGA-C8-A132 ZNF710 SNP Missense_Mutation 15 90611078 C T 22 61 BRCA TCGA-C8-A132 EARS2 SNP Missense_Mutation 16 23546520 T C 58 88 BRCA TCGA-C8-A132 MYH4 SNP Missense_Mutation 17 10358324 G A 40 100 BRCA TCGA-C8-A132 PRPF8 SNP Missense_Mutation 17 1557290 G A 48 100 BRCA TCGA-C8-A132 KRT32 SNP Silent 17 39623317 G A 48 52 BRCA TCGA-C8-A132 COL1A1 SNP Missense_Mutation 17 48263242 C T 26 93 BRCA TCGA-C8-A132 COL1A1 SNP Missense_Mutation 17 48264447 C G 21 92 BRCA TCGA-C8-A132 COL1A1 SNP Silent 17 48266586 C T 21 56 BRCA TCGA-C8-A132 COL1A1 SNP Missense_Mutation 17 48267243 C T 25 69 BRCA TCGA-C8-A132 BPTF SNP Missense_Mutation 17 65914927 C A 30 83 BRCA TCGA-C8-A132 QRICH2 SNP Missense_Mutation 17 74277976 C T 31 65 BRCA TCGA-C8-A132 ZNF407 SNP Missense_Mutation 18 72347051 C G 30 54 BRCA TCGA-C8-A132 PRX SNP Missense_Mutation 19 40902578 C G 32 59 BRCA TCGA-C8-A132 ERCC1 SNP Nonsense_Mutation 19 45924518 G C 45 55 BRCA TCGA-C8-A132 C20orf26 SNP Missense_Mutation 20 20269280 G T 48 78 BRCA TCGA-C8-A132 SNX21 SNP Silent 20 44463689 A C 6 47 BRCA TCGA-C8-A132 DIDO1 SNP Splice_Site 20 61523338 C G 18 97 BRCA TCGA-C8-A132 BACE2 SNP Silent 21 42617984 A G 8 45 BRCA TCGA-C8-A132 YDJC SNP Missense_Mutation 22 21982871 G A 38 55 BRCA TCGA-C8-A132 PIWIL3 SNP Missense_Mutation 22 25119160 C T 30 48 BRCA TCGA-C8-A132 PLXNB2 DEL In_Frame_Del 22 50719581 TCT - 50 63 BRCA TCGA-C8-A132 BCORL1 SNP Missense_Mutation 23 129149801 C T 22 53 BRCA TCGA-C8-A132 KIAA2022 SNP Missense_Mutation 23 73960461 G A 40 63 BRCA TCGA-C8-A132 COL8A1 SNP Silent 3 99513747 G A 43 50 BRCA TCGA-C8-A132 MTTP SNP Silent 4 100530060 G T 43 51 BRCA TCGA-C8-A132 TIFA SNP Missense_Mutation 4 113199046 G C 39 87 BRCA TCGA-C8-A132 ARSJ SNP Silent 4 114823652 G A 45 75 BRCA TCGA-C8-A132 CPEB2 SNP Missense_Mutation 4 15060048 A G 16 92 BRCA TCGA-C8-A132 HTT SNP Missense_Mutation 4 3190715 A G 8 79 BRCA TCGA-C8-A132 MCC SNP Missense_Mutation 5 112420867 G C 37 42 BRCA TCGA-C8-A132 PCDHB5 SNP Missense_Mutation 5 140517348 G C 38 33 BRCA TCGA-C8-A132 RGMB DEL Frame_Shift_Del 5 98129189 AC - 14 69 BRCA TCGA-C8-A132 ENPP3 SNP Missense_Mutation 6 132014640 C G 23 62 BRCA TCGA-C8-A132 PPP1R3A DEL Frame_Shift_Del 7 113518116 T - 52 48 BRCA TCGA-C8-A132 GARS SNP Silent 7 30649281 A G 16 37 BRCA TCGA-C8-A132 WIPI2 SNP Missense_Mutation 7 5262288 G A 39 98 BRCA TCGA-C8-A132 SLC39A14 SNP Missense_Mutation 8 22277089 C G 29 73 BRCA TCGA-C8-A132 CDH17 SNP Silent 8 95172379 C G 29 52 BRCA TCGA-C8-A132 IKBKAP SNP Missense_Mutation 9 111659236 G C 45 63 BRCA TCGA-C8-A132 IARS SNP Splice_site 9 95003139 T A 56 64 BRCA TCGA-C8-A133 LOC653513 INS Splice_Site 1 144679890 - A 61 55 BRCA TCGA-C8-A133 GATA3 DEL Frame_Shift_Del 10 8115810 CCCAAGAACAGCTCGTTTAA - 22 72 BRCA TCGA-C8-A133 TEAD4 SNP Missense_Mutation 12 3104024 T G 55 71 BRCA TCGA-C8-A133 CNTN1 SNP Splice_site 12 41316230 T A 51 89 BRCA TCGA-C8-A133 CKAP2 SNP Missense_Mutation 13 53048072 T G 56 50 BRCA TCGA-C8-A133 SULT1A2 SNP Missense_Mutation 16 28603690 C T 21 47 BRCA TCGA-C8-A133 CORO1A SNP Missense_Mutation 16 30198938 G A 40 32 BRCA TCGA-C8-A133 PSMB6 SNP Missense_Mutation 17 4700075 C T 30 90 BRCA TCGA-C8-A133 PDE4C SNP Silent 19 18333013 C G 17 51 BRCA TCGA-C8-A133 ENSG00000229113 SNP Missense_Mutation 19 42027776 C T 28 70 BRCA TCGA-C8-A133 DMWD SNP Missense_Mutation 19 46294321 C T 29 92 BRCA TCGA-C8-A133 TRPC4AP SNP Silent 20 33591392 G A 35 61 BRCA TCGA-C8-A133 ASCC2 SNP Silent 22 30189408 G A 40 50 BRCA TCGA-C8-A133 ALG13 SNP Missense_Mutation 23 110987998 C A 24 49 BRCA TCGA-C8-A133 AFF2 SNP Missense_Mutation 23 148037578 G T 33 69 BRCA TCGA-C8-A133 MBD4 SNP Missense_Mutation 3 129152964 C T 31 61 BRCA TCGA-C8-A133 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-C8-A133 FBXL5 SNP Missense_Mutation 4 15627295 G T 35 95 BRCA TCGA-C8-A133 MYB SNP Missense_Mutation 6 135511361 C T 25 100 BRCA TCGA-C8-A133 RMND1 SNP Nonsense_Mutation 6 151743699 C A 29 81 BRCA TCGA-C8-A133 RREB1 SNP Silent 6 7189439 A G 9 57 BRCA TCGA-C8-A133 PRSS37 SNP Missense_Mutation 7 141537798 C A 30 67 BRCA TCGA-C8-A133 SULF1 SNP Missense_Mutation 8 70541787 C A 17 48 BRCA TCGA-C8-A133 LOC728683 SNP Silent 9 68371770 G A 44 64 BRCA TCGA-C8-A134 SPAG17 SNP Missense_Mutation 1 118582015 A C 9 53 BRCA TCGA-C8-A134 ANKRD34A SNP Missense_Mutation 1 145474686 C T 24 76 BRCA TCGA-C8-A134 FLG SNP Missense_Mutation 1 152284334 C G 27 50 BRCA TCGA-C8-A134 UBE2Q1 SNP Missense_Mutation 1 154525280 G A 37 97 BRCA TCGA-C8-A134 SMG5 SNP Missense_Mutation 1 156236362 G C 41 67 BRCA TCGA-C8-A134 ADCY10 SNP Silent 1 167823634 C G 23 46 BRCA TCGA-C8-A134 HMCN1 SNP Missense_Mutation 1 186115046 G T 34 56 BRCA TCGA-C8-A134 ZC3H11A SNP Missense_Mutation 1 203787708 G A 46 92 BRCA TCGA-C8-A134 CNTN2 SNP Missense_Mutation 1 205042352 G C 40 58 BRCA TCGA-C8-A134 INTS7 SNP Missense_Mutation 1 212180058 C T 20 79 BRCA TCGA-C8-A134 USH2A SNP Missense_Mutation 1 216348807 G T 42 50 BRCA TCGA-C8-A134 AGT SNP Missense_Mutation 1 230846038 C A 17 50 BRCA TCGA-C8-A134 ACTRT2 SNP Missense_Mutation 1 2939179 G T 43 95 BRCA TCGA-C8-A134 ADAMTS14 SNP Silent 10 72468454 C T 28 83 BRCA TCGA-C8-A134 ZMIZ1 SNP Missense_Mutation 10 81067225 T G 51 87 BRCA TCGA-C8-A134 NXPE1 SNP Missense_Mutation 11 114392917 C G 20 76 BRCA TCGA-C8-A134 PHLDB1 SNP Missense_Mutation 11 118498583 G T 33 62 BRCA TCGA-C8-A134 OR8B12 SNP Missense_Mutation 11 124412667 T A 50 86 BRCA TCGA-C8-A134 MUC5B SNP Silent 11 1269276 C G 29 51 BRCA TCGA-C8-A134 NAV2 SNP Nonsense_Mutation 11 19961292 G T 47 78 BRCA TCGA-C8-A134 PRMT3 SNP Silent 11 20417383 C T 24 47 BRCA TCGA-C8-A134 LGR4 SNP Missense_Mutation 11 27390302 G T 46 58 BRCA TCGA-C8-A134 RAG2 SNP Missense_Mutation 11 36614637 G A 48 60 BRCA TCGA-C8-A134 MADD SNP Missense_Mutation 11 47315517 C A 24 65 BRCA TCGA-C8-A134 CELF1 SNP Missense_Mutation 11 47506035 C G 32 100 BRCA TCGA-C8-A134 OR52A1 SNP Missense_Mutation 11 5172768 G T 33 59 BRCA TCGA-C8-A134 DAGLA SNP Missense_Mutation 11 61503794 T C 58 84 BRCA TCGA-C8-A134 BSCL2 SNP Missense_Mutation 11 62459875 C T 27 60 BRCA TCGA-C8-A134 SLC25A45 SNP Nonsense_Mutation 11 65143833 C A 30 44 BRCA TCGA-C8-A134 FAT3 SNP Missense_Mutation 11 92531478 C T 22 100 BRCA TCGA-C8-A134 RIC8B SNP Missense_Mutation 12 107208904 G T 41 83 BRCA TCGA-C8-A134 RPH3A SNP Missense_Mutation 12 113314597 C G 24 60 BRCA TCGA-C8-A134 TBX3 SNP Silent 12 115112369 C G 23 47 BRCA TCGA-C8-A134 TMEM132C SNP Missense_Mutation 12 129190322 G A 42 83 BRCA TCGA-C8-A134 OTOGL SNP Splice_site 12 80613594 G A 44 80 BRCA TCGA-C8-A134 SLC25A15 SNP Missense_Mutation 13 41373296 G T 33 59 BRCA TCGA-C8-A134 TTC9 SNP Missense_Mutation 14 71109059 G T 33 66 BRCA TCGA-C8-A134 DNAL1 SNP Missense_Mutation 14 74125593 A C 1 86 BRCA TCGA-C8-A134 UNC13C SNP Silent 15 54590073 A G 3 53 BRCA TCGA-C8-A134 RASL12 SNP Missense_Mutation 15 65350882 C T 27 63 BRCA TCGA-C8-A134 TLE3 SNP Missense_Mutation 15 70350527 G C 39 67 BRCA TCGA-C8-A134 LOC728477 SNP Missense_Mutation 15 90838200 G C 44 72 BRCA TCGA-C8-A134 GPR139 SNP Missense_Mutation 16 20043104 C A 18 96 BRCA TCGA-C8-A134 CTCF SNP Silent 16 67645098 T A 55 44 BRCA TCGA-C8-A134 MSLNL SNP Silent 16 820069 G T 35 52 BRCA TCGA-C8-A134 CCDC144A SNP Missense_Mutation 17 16623911 G C 48 49 BRCA TCGA-C8-A134 C17orf47 SNP Missense_Mutation 17 56620214 G A 39 56 BRCA TCGA-C8-A134 FBF1 SNP Missense_Mutation 17 73923583 G A 39 53 BRCA TCGA-C8-A134 TP53 SNP Missense_Mutation 17 7577120 C T 19 94 BRCA TCGA-C8-A134 USP36 SNP Silent 17 76799928 C T 27 56 BRCA TCGA-C8-A134 CDH2 SNP Silent 18 25572679 A G 7 33 BRCA TCGA-C8-A134 CNDP1 SNP Missense_Mutation 18 72226583 A C 11 75 BRCA TCGA-C8-A134 ZNF491 SNP Missense_Mutation 19 11917733 C T 20 61 BRCA TCGA-C8-A134 LGALS7 SNP Missense_Mutation 19 39262536 G A 39 42 BRCA TCGA-C8-A134 MAP3K10 SNP Silent 19 40698100 C G 27 54 BRCA TCGA-C8-A134 CYP2A7 SNP Silent 19 41384689 G A 36 70 BRCA TCGA-C8-A134 SRRM5 SNP Silent 19 44117665 T A 53 57 BRCA TCGA-C8-A134 NLRP5 SNP Silent 19 56538817 C T 31 19 BRCA TCGA-C8-A134 ZNF418 SNP Missense_Mutation 19 58437810 T C 62 49 BRCA TCGA-C8-A134 ODC1 SNP Silent 2 10584253 C T 29 56 BRCA TCGA-C8-A134 PLEKHB2 SNP Missense_Mutation 2 132110630 C T 19 53 BRCA TCGA-C8-A134 MSTN SNP Missense_Mutation 2 190924922 T G 54 77 BRCA TCGA-C8-A134 FARP2 SNP Nonsense_Mutation 2 242380741 T A 63 73 BRCA TCGA-C8-A134 ADCY3 SNP Silent 2 25062756 G A 39 32 BRCA TCGA-C8-A134 SULT6B1 SNP Silent 2 37402347 A G 4 48 BRCA TCGA-C8-A134 RTKN SNP Silent 2 74659725 T C 55 39 BRCA TCGA-C8-A134 AHCY SNP Missense_Mutation 20 32880287 C G 31 100 BRCA TCGA-C8-A134 CTCFL SNP Missense_Mutation 20 56098927 A T 6 61 BRCA TCGA-C8-A134 C20orf151 SNP Missense_Mutation 20 60988927 C A 21 54 BRCA TCGA-C8-A134 HSPA13 SNP Silent 21 15750638 C T 20 50 BRCA TCGA-C8-A134 ITGB2 SNP Silent 21 46308699 C T 24 70 BRCA TCGA-C8-A134 H2BFWT DEL Frame_Shift_Del 23 103267771 G - 39 48 BRCA TCGA-C8-A134 TBC1D8B SNP Missense_Mutation 23 106065364 C A 24 95 BRCA TCGA-C8-A134 IGSF1 SNP Missense_Mutation 23 130419141 A G 15 54 BRCA TCGA-C8-A134 SLC10A3 SNP Missense_Mutation 23 153716008 C A 32 57 BRCA TCGA-C8-A134 CXorf22 SNP Missense_Mutation 23 35984726 A T 3 63 BRCA TCGA-C8-A134 EDA2R SNP Missense_Mutation 23 65819549 G C 37 60 BRCA TCGA-C8-A134 RPS6KA6 SNP Missense_Mutation 23 83319326 G T 47 94 BRCA TCGA-C8-A134 TAGLN3 SNP Silent 3 111730662 A C 7 49 BRCA TCGA-C8-A134 PARP14 SNP Missense_Mutation 3 122414437 G C 35 74 BRCA TCGA-C8-A134 TSEN2 SNP Missense_Mutation 3 12531408 T C 52 75 BRCA TCGA-C8-A134 FAM194A SNP Missense_Mutation 3 150387188 C T 18 63 BRCA TCGA-C8-A134 HACL1 SNP Silent 3 15613244 C T 20 58 BRCA TCGA-C8-A134 RFC4 SNP Missense_Mutation 3 186518913 C G 30 95 BRCA TCGA-C8-A134 OR5H2 SNP Missense_Mutation 3 98002196 A C 15 51 BRCA TCGA-C8-A134 PCDHA7 SNP Missense_Mutation 5 140214974 G C 36 57 BRCA TCGA-C8-A134 AIG1 SNP Nonsense_Mutation 6 143486276 A T 9 85 BRCA TCGA-C8-A134 STXBP5 SNP Missense_Mutation 6 147556463 A G 4 90 BRCA TCGA-C8-A134 KHDRBS2 SNP Silent 6 62688082 A G 8 62 BRCA TCGA-C8-A134 PPP1R3A DEL Frame_Shift_Del 7 113558810 T - 50 91 BRCA TCGA-C8-A134 PPP1R3A SNP Missense_Mutation 7 113558812 A C 5 79 BRCA TCGA-C8-A134 CFTR SNP Splice_site 7 117267576 A T 12 89 BRCA TCGA-C8-A134 DFNA5 DEL In_Frame_Del 7 24747815 CTGTTGTGGCTCAGGCAG - 32 61 BRCA TCGA-C8-A134 ELN SNP Silent 7 73474244 T A 55 26 BRCA TCGA-C8-A134 SRCRB4D SNP Missense_Mutation 7 76019578 A T 10 91 BRCA TCGA-C8-A134 RAD21 SNP Missense_Mutation 8 117862992 C A 28 54 BRCA TCGA-C8-A134 MFSD3 SNP Missense_Mutation 8 145735356 G C 43 92 BRCA TCGA-C8-A134 CPNE3 SNP Missense_Mutation 8 87549810 A T 10 93 BRCA TCGA-C8-A134 SLC24A2 SNP Missense_Mutation 9 19786554 G T 33 62 BRCA TCGA-C8-A134 TEK SNP Missense_Mutation 9 27109613 C T 32 74 BRCA TCGA-C8-A135 HRNR SNP Missense_Mutation 1 152191856 G T 41 56 BRCA TCGA-C8-A135 CHRNB2 SNP Missense_Mutation 1 154542778 C G 17 58 BRCA TCGA-C8-A135 OR2T11 SNP Silent 1 248789815 G T 45 52 BRCA TCGA-C8-A135 ANGPTL3 SNP Missense_Mutation 1 63066808 G C 33 76 BRCA TCGA-C8-A135 GAD2 SNP Missense_Mutation 10 26534920 G T 48 61 BRCA TCGA-C8-A135 AKR1C2 SNP Nonsense_Mutation 10 5043762 G A 39 42 BRCA TCGA-C8-A135 ALDH18A1 SNP Missense_Mutation 10 97386504 C T 26 92 BRCA TCGA-C8-A135 GRIA4 SNP Missense_Mutation 11 105481779 G A 38 82 BRCA TCGA-C8-A135 CAPN1 SNP Missense_Mutation 11 64973997 C T 27 95 BRCA TCGA-C8-A135 CTSF SNP Missense_Mutation 11 66335472 C T 19 52 BRCA TCGA-C8-A135 CARNS1 SNP Missense_Mutation 11 67186344 C A 17 77 BRCA TCGA-C8-A135 KRT5 SNP Silent 12 52913583 G T 39 20 BRCA TCGA-C8-A135 RABGGTA SNP Missense_Mutation 14 24737947 C T 23 58 BRCA TCGA-C8-A135 SH2B1 SNP Missense_Mutation 16 28880551 C T 23 56 BRCA TCGA-C8-A135 ZNF469 SNP Missense_Mutation 16 88505324 A C 9 55 BRCA TCGA-C8-A135 SGK494 SNP Silent 17 26938661 C T 29 57 BRCA TCGA-C8-A135 ERBB2 SNP Missense_Mutation 17 37880261 G C 33 98 BRCA TCGA-C8-A135 COL1A1 SNP Missense_Mutation 17 48273322 C T 27 69 BRCA TCGA-C8-A135 ABCA5 SNP Silent 17 67283782 A G 4 49 BRCA TCGA-C8-A135 SLC25A19 SNP Missense_Mutation 17 73274371 C T 31 94 BRCA TCGA-C8-A135 TP53 DEL Frame_Shift_Del 17 7577558 G - 35 64 BRCA TCGA-C8-A135 SPIRE1 SNP Silent 18 12479722 G A 39 44 BRCA TCGA-C8-A135 EIF3G SNP Missense_Mutation 19 10229782 G A 42 74 BRCA TCGA-C8-A135 ZSCAN18 SNP Silent 19 58601320 G C 41 54 BRCA TCGA-C8-A135 NCKAP1 SNP Missense_Mutation 2 183800041 C T 26 100 BRCA TCGA-C8-A135 MYT1L SNP Missense_Mutation 2 1906950 G A 37 72 BRCA TCGA-C8-A135 SGPP2 SNP Missense_Mutation 2 223423433 G A 40 93 BRCA TCGA-C8-A135 OR6B3 SNP Missense_Mutation 2 240985219 G A 40 43 BRCA TCGA-C8-A135 ANO7 SNP Missense_Mutation 2 242157277 G T 43 56 BRCA TCGA-C8-A135 EML4 INS Frame_Shift_Ins 2 42472741 - A 53 89 BRCA TCGA-C8-A135 VPS54 SNP Missense_Mutation 2 64147047 T C 62 74 BRCA TCGA-C8-A135 CDH4 SNP Missense_Mutation 20 60419731 C A 30 94 BRCA TCGA-C8-A135 CELSR3 SNP Missense_Mutation 3 48694433 C T 27 60 BRCA TCGA-C8-A135 SCLT1 SNP Missense_Mutation 4 129880840 T A 62 56 BRCA TCGA-C8-A135 SLC2A9 SNP Silent 4 9998464 G A 37 44 BRCA TCGA-C8-A135 SLIT3 SNP Missense_Mutation 5 168189673 C G 24 74 BRCA TCGA-C8-A135 PROP1 SNP Missense_Mutation 5 177421244 G A 39 65 BRCA TCGA-C8-A135 HNRNPH1 SNP Missense_Mutation 5 179043881 C T 26 74 BRCA TCGA-C8-A135 TBC1D9B SNP Silent 5 179294634 G A 34 43 BRCA TCGA-C8-A135 PIK3R1 SNP Missense_Mutation 5 67589556 A G 12 89 BRCA TCGA-C8-A135 B3GALT4 SNP Missense_Mutation 6 33245414 T G 55 85 BRCA TCGA-C8-A135 COL9A1 SNP Silent 6 70942386 G A 39 25 BRCA TCGA-C8-A135 PSMC2 SNP Silent 7 103004751 T C 59 50 BRCA TCGA-C8-A135 SLC4A2 SNP Missense_Mutation 7 150761705 C T 19 67 BRCA TCGA-C8-A135 GARS SNP Missense_Mutation 7 30643153 G A 37 98 BRCA TCGA-C8-A135 RABGEF1 DEL Frame_Shift_Del 7 66236971 CCTG - 22 52 BRCA TCGA-C8-A135 ZNF12 SNP Missense_Mutation 7 6730822 T C 64 85 BRCA TCGA-C8-A135 ZFPM2 SNP Silent 8 106815514 G A 34 70 BRCA TCGA-C8-A135 ANGPT1 SNP Silent 8 108359218 G C 33 47 BRCA TCGA-C8-A135 ATP6V1H SNP Missense_Mutation 8 54708209 G A 37 74 BRCA TCGA-C8-A135 SVEP1 DEL Splice_site 9 113141625 ACCTCTG - 14 91 BRCA TCGA-C8-A135 TUBB4B SNP Missense_Mutation 9 140137465 C A 32 65 BRCA TCGA-C8-A135 TEK SNP Missense_Mutation 9 27209143 G A 35 100 BRCA TCGA-C8-A135 FAM75D1 SNP Missense_Mutation 9 84608727 G T 34 49 BRCA TCGA-C8-A137 HRNR INS Frame_Shift_Ins 1 152191302 - G 63 53 BRCA TCGA-C8-A137 DCST1 SNP Nonsense_Mutation 1 155018634 G T 45 83 BRCA TCGA-C8-A137 ENSG00000197511 SNP Missense_Mutation 1 16862282 G A 46 53 BRCA TCGA-C8-A137 DIRAS3 SNP Silent 1 68512642 G A 41 62 BRCA TCGA-C8-A137 C1orf173 SNP Silent 1 75078444 G A 45 56 BRCA TCGA-C8-A137 KNDC1 SNP Missense_Mutation 10 135026343 G A 38 49 BRCA TCGA-C8-A137 LAYN SNP Missense_Mutation 11 111414717 G A 37 61 BRCA TCGA-C8-A137 C11orf21 SNP Missense_Mutation 11 2321978 C G 29 57 BRCA TCGA-C8-A137 QSER1 SNP Missense_Mutation 11 32955061 G T 44 51 BRCA TCGA-C8-A137 OR5I1 SNP Missense_Mutation 11 55703121 G C 33 54 BRCA TCGA-C8-A137 KCTD21 SNP Missense_Mutation 11 77885216 C T 31 71 BRCA TCGA-C8-A137 TROAP SNP Missense_Mutation 12 49724652 C G 32 57 BRCA TCGA-C8-A137 KRT81 SNP Silent 12 52681912 C G 27 53 BRCA TCGA-C8-A137 SLC2A14 SNP Missense_Mutation 12 7981305 G A 40 40 BRCA TCGA-C8-A137 OTOGL SNP Missense_Mutation 12 80730728 A G 9 85 BRCA TCGA-C8-A137 LTBP2 SNP Missense_Mutation 14 74970002 C T 27 51 BRCA TCGA-C8-A137 SERPINA6 SNP Nonstop_Mutation 14 94770757 A C 14 52 BRCA TCGA-C8-A137 LOC653061 INS Frame_Shift_Ins 15 23609313 - T 42 33 BRCA TCGA-C8-A137 LOC653061 DEL In_Frame_Del 15 23609317 TGG - 55 45 BRCA TCGA-C8-A137 COX5A SNP Missense_Mutation 15 75221511 G A 37 82 BRCA TCGA-C8-A137 ZSCAN2 SNP Silent 15 85164365 G A 33 50 BRCA TCGA-C8-A137 MRPS11 SNP Splice_Site 15 89020219 G A 33 93 BRCA TCGA-C8-A137 UQCRC2 SNP Missense_Mutation 16 21994417 G C 33 64 BRCA TCGA-C8-A137 ARHGAP17 SNP Missense_Mutation 16 24942551 G A 41 59 BRCA TCGA-C8-A137 MAZ SNP Nonsense_Mutation 16 29821526 C T 29 71 BRCA TCGA-C8-A137 ITGAM SNP Splice_Site 16 31341486 G T 44 75 BRCA TCGA-C8-A137 CCT6B SNP Missense_Mutation 17 33278998 C G 32 74 BRCA TCGA-C8-A137 COASY SNP Silent 17 40715174 C T 22 54 BRCA TCGA-C8-A137 HGS SNP Missense_Mutation 17 79653400 G T 38 93 BRCA TCGA-C8-A137 MYADML2 SNP Silent 17 79899495 G A 43 49 BRCA TCGA-C8-A137 MAP3K10 SNP Missense_Mutation 19 40711935 C T 19 65 BRCA TCGA-C8-A137 MBOAT7 SNP Silent 19 54691160 G A 40 51 BRCA TCGA-C8-A137 MCM6 SNP Missense_Mutation 2 136602246 C T 31 100 BRCA TCGA-C8-A137 BBS5 SNP Missense_Mutation 2 170343618 C T 32 100 BRCA TCGA-C8-A137 OTOF SNP Missense_Mutation 2 26707384 G A 40 80 BRCA TCGA-C8-A137 LHCGR SNP Missense_Mutation 2 48915909 A T 8 92 BRCA TCGA-C8-A137 FAHD2A SNP Missense_Mutation 2 96076768 G A 48 50 BRCA TCGA-C8-A137 ARHGAP40 SNP Missense_Mutation 20 37270404 C T 29 64 BRCA TCGA-C8-A137 BMP2 SNP Missense_Mutation 20 6758938 A T 12 62 BRCA TCGA-C8-A137 TSPAN7 SNP Missense_Mutation 23 38533518 C A 20 56 BRCA TCGA-C8-A137 P2RY4 SNP Missense_Mutation 23 69479266 G A 40 58 BRCA TCGA-C8-A137 HSPA4L SNP Silent 4 128751921 G A 47 56 BRCA TCGA-C8-A137 CLDN24 SNP Missense_Mutation 4 184243151 C G 32 53 BRCA TCGA-C8-A137 PDGFRA SNP Silent 4 55133783 C G 29 52 BRCA TCGA-C8-A137 PCDHAC2 SNP Missense_Mutation 5 140348769 C A 29 59 BRCA TCGA-C8-A137 ENSG00000170089 SNP Missense_Mutation 5 177305674 G C 45 87 BRCA TCGA-C8-A137 ATAT1 SNP Silent 6 30595007 C T 30 50 BRCA TCGA-C8-A137 TWISTNB SNP Missense_Mutation 7 19739894 T A 61 89 BRCA TCGA-C8-A137 SNX10 SNP Missense_Mutation 7 26404752 G A 33 78 BRCA TCGA-C8-A137 ZNF498 SNP Nonsense_Mutation 7 99219167 G T 47 60 BRCA TCGA-C8-A137 C8orf48 SNP Missense_Mutation 8 13425043 G A 45 48 BRCA TCGA-C8-A137 FAM110B SNP Silent 8 59059479 C T 31 48 BRCA TCGA-C8-A137 FPGS SNP Missense_Mutation 9 130575737 C T 30 53 BRCA TCGA-C8-A137 PAX5 DEL Frame_Shift_Del 9 37020655 A - 5 92 BRCA TCGA-C8-A137 FRMPD1 SNP Missense_Mutation 9 37731074 G A 40 76 BRCA TCGA-C8-A138 TDRD5 SNP Silent 1 179604942 C A 29 47 BRCA TCGA-C8-A138 EPRS SNP Missense_Mutation 1 220152916 C T 17 99 BRCA TCGA-C8-A138 ZNF695 SNP Missense_Mutation 1 247151327 C A 24 54 BRCA TCGA-C8-A138 STIM1 SNP Missense_Mutation 11 4112595 G A 40 69 BRCA TCGA-C8-A138 OR52J3 SNP Missense_Mutation 11 5067871 T C 59 62 BRCA TCGA-C8-A138 SLC22A9 SNP Missense_Mutation 11 63175599 G A 40 51 BRCA TCGA-C8-A138 BRMS1 SNP Nonsense_Mutation 11 66105190 C T 30 52 BRCA TCGA-C8-A138 PC SNP Missense_Mutation 11 66631396 C T 27 92 BRCA TCGA-C8-A138 SHANK2 SNP Missense_Mutation 11 70333654 C A 32 78 BRCA TCGA-C8-A138 ACER3 SNP Missense_Mutation 11 76696702 G T 33 64 BRCA TCGA-C8-A138 PCBP2 SNP Silent 12 53849274 G A 35 49 BRCA TCGA-C8-A138 TMTC2 SNP Missense_Mutation 12 83251115 T G 59 88 BRCA TCGA-C8-A138 A2M SNP Silent 12 9242995 G A 40 50 BRCA TCGA-C8-A138 MTHFD1 SNP Silent 14 64898264 C A 29 62 BRCA TCGA-C8-A138 CPEB1 SNP Missense_Mutation 15 83224732 A C 6 49 BRCA TCGA-C8-A138 PARD6A SNP Silent 16 67695950 C T 19 51 BRCA TCGA-C8-A138 ANKFN1 SNP Silent 17 54431265 C T 30 49 BRCA TCGA-C8-A138 NXN SNP Silent 17 722712 G T 38 56 BRCA TCGA-C8-A138 TP53 DEL Frame_Shift_Del 17 7576924 GT - 36 51 BRCA TCGA-C8-A138 PTPRM SNP Missense_Mutation 18 8376551 G A 40 100 BRCA TCGA-C8-A138 IRGC SNP Missense_Mutation 19 44222997 C T 23 59 BRCA TCGA-C8-A138 MYH14 SNP Missense_Mutation 19 50771580 C T 23 75 BRCA TCGA-C8-A138 LIM2 SNP Missense_Mutation 19 51890496 G A 39 33 BRCA TCGA-C8-A138 NEB SNP Missense_Mutation 2 152410473 T C 50 54 BRCA TCGA-C8-A138 ALS2CR11 SNP Silent 2 202356525 T C 52 45 BRCA TCGA-C8-A138 ZDBF2 SNP Missense_Mutation 2 207174608 G T 45 50 BRCA TCGA-C8-A138 AQP12A SNP Silent 2 241631799 C T 25 47 BRCA TCGA-C8-A138 ZNFX1 SNP Missense_Mutation 20 47865218 G A 41 69 BRCA TCGA-C8-A138 TRAPPC10 DEL Frame_Shift_Del 21 45475668 T - 56 92 BRCA TCGA-C8-A138 TPST2 SNP Missense_Mutation 22 26937270 C T 25 75 BRCA TCGA-C8-A138 SHANK3 SNP Missense_Mutation 22 51143180 G A 37 96 BRCA TCGA-C8-A138 GPM6B SNP Missense_Mutation 23 13834993 C G 30 82 BRCA TCGA-C8-A138 GAGE13 SNP Missense_Mutation 23 49192696 C T 23 57 BRCA TCGA-C8-A138 ATP2B2 SNP Silent 3 10387757 G A 40 50 BRCA TCGA-C8-A138 LSG1 SNP Silent 3 194387183 C T 30 46 BRCA TCGA-C8-A138 RARB SNP Nonsense_Mutation 3 25542765 C A 26 64 BRCA TCGA-C8-A138 PLCD1 DEL In_Frame_Del 3 38051418 TGACCCCATCCA - 59 50 BRCA TCGA-C8-A138 STAB1 SNP Missense_Mutation 3 52552806 G A 39 50 BRCA TCGA-C8-A138 SLMAP INS In_Frame_Ins 3 57908744 - AAT 9 62 BRCA TCGA-C8-A138 LRBA SNP Missense_Mutation 4 151793884 G A 37 98 BRCA TCGA-C8-A138 LNX1 SNP Missense_Mutation 4 54362438 G T 48 74 BRCA TCGA-C8-A138 C4orf50 SNP Silent 4 5977632 G A 43 47 BRCA TCGA-C8-A138 REV3L SNP Missense_Mutation 6 111696389 T C 62 88 BRCA TCGA-C8-A138 SLC22A3 SNP Nonsense_Mutation 6 160864753 G T 33 81 BRCA TCGA-C8-A138 DAAM2 SNP Missense_Mutation 6 39832810 G A 40 77 BRCA TCGA-C8-A138 RREB1 SNP Missense_Mutation 6 7211836 G A 41 75 BRCA TCGA-C8-A138 CCDC136 SNP Missense_Mutation 7 128444776 G A 34 65 BRCA TCGA-C8-A138 FASTK SNP Missense_Mutation 7 150774052 G C 37 86 BRCA TCGA-C8-A138 TEX15 SNP Silent 8 30700783 T C 57 50 BRCA TCGA-C8-A138 NTNG2 SNP Missense_Mutation 9 135073714 G A 38 98 BRCA TCGA-C8-A1HE RRNAD1 SNP Missense_Mutation 1 156702141 G T 39 69 BRCA TCGA-C8-A1HE USH2A SNP Missense_Mutation 1 216108090 C T 23 57 BRCA TCGA-C8-A1HE FDXACB1 SNP Nonsense_Mutation 11 111749772 G A 45 32 BRCA TCGA-C8-A1HE ABCC9 SNP Missense_Mutation 12 21953991 C T 27 77 BRCA TCGA-C8-A1HE DCLK1 SNP Splice_Site 13 36367617 C T 24 97 BRCA TCGA-C8-A1HE FAM124A SNP Missense_Mutation 13 51855093 G A 37 55 BRCA TCGA-C8-A1HE GSC SNP Silent 14 95234888 C T 31 49 BRCA TCGA-C8-A1HE CHSY1 SNP Missense_Mutation 15 101718167 A T 7 93 BRCA TCGA-C8-A1HE SPTBN5 SNP Missense_Mutation 15 42166578 G A 33 52 BRCA TCGA-C8-A1HE SLC5A11 SNP Missense_Mutation 16 24869995 C A 30 46 BRCA TCGA-C8-A1HE CREBBP SNP Missense_Mutation 16 3808953 G A 40 80 BRCA TCGA-C8-A1HE HOXB13 SNP Nonsense_Mutation 17 46805422 C T 30 93 BRCA TCGA-C8-A1HE NACA2 SNP Nonsense_Mutation 17 59668409 G A 47 66 BRCA TCGA-C8-A1HE SDK2 SNP Missense_Mutation 17 71427712 G C 38 93 BRCA TCGA-C8-A1HE ZNF442 SNP Missense_Mutation 19 12461860 C T 27 43 BRCA TCGA-C8-A1HE ZNF585A SNP Missense_Mutation 19 37643456 A C 11 50 BRCA TCGA-C8-A1HE TBC1D17 SNP Missense_Mutation 19 50381800 G A 33 83 BRCA TCGA-C8-A1HE MYBPC2 SNP Missense_Mutation 19 50946815 G A 45 90 BRCA TCGA-C8-A1HE ZNF525 SNP Missense_Mutation 19 53885220 G T 41 67 BRCA TCGA-C8-A1HE ZFAND2B SNP Silent 2 220073995 C T 25 51 BRCA TCGA-C8-A1HE CUL3 SNP Silent 2 225362533 G A 45 59 BRCA TCGA-C8-A1HE HJURP SNP Missense_Mutation 2 234749835 G A 48 44 BRCA TCGA-C8-A1HE BIRC6 SNP Silent 2 32824940 C T 29 65 BRCA TCGA-C8-A1HE WFDC5 SNP Missense_Mutation 20 43739300 G A 39 76 BRCA TCGA-C8-A1HE PREX1 SNP Silent 20 47254270 G A 35 58 BRCA TCGA-C8-A1HE BRWD1 SNP Silent 21 40670464 G A 33 54 BRCA TCGA-C8-A1HE TCF20 SNP Silent 22 42608681 G A 45 60 BRCA TCGA-C8-A1HE NGFRAP1 SNP Missense_Mutation 23 102632641 G A 45 54 BRCA TCGA-C8-A1HE MGLL DEL Frame_Shift_Del 3 127439973 TCTCT - 54 76 BRCA TCGA-C8-A1HE PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-C8-A1HE MLH1 SNP Missense_Mutation 3 37089169 G C 45 99 BRCA TCGA-C8-A1HE STOX2 SNP Missense_Mutation 4 184922544 T A 54 93 BRCA TCGA-C8-A1HE PDS5A SNP Silent 4 39846302 C T 29 57 BRCA TCGA-C8-A1HE ODZ2 SNP Missense_Mutation 5 167673880 C T 30 100 BRCA TCGA-C8-A1HE TSPYL1 SNP Missense_Mutation 6 116600543 C T 29 40 BRCA TCGA-C8-A1HE EZR SNP Missense_Mutation 6 159197489 G A 33 85 BRCA TCGA-C8-A1HE MAP3K4 SNP Silent 6 161502011 C T 29 72 BRCA TCGA-C8-A1HE EFHC1 SNP Missense_Mutation 6 52329847 G C 33 43 BRCA TCGA-C8-A1HE TBX18 SNP Silent 6 85466569 C A 31 47 BRCA TCGA-C8-A1HE ST7 SNP Silent 7 116863013 A G 4 47 BRCA TCGA-C8-A1HE PARP12 SNP Silent 7 139756696 G A 47 52 BRCA TCGA-C8-A1HE PDE1C SNP Missense_Mutation 7 31864536 T C 54 63 BRCA TCGA-C8-A1HE FAM133B SNP Splice_site 7 92207495 C G 32 63 BRCA TCGA-C8-A1HE SNTB1 SNP Missense_Mutation 8 121644761 C T 29 72 BRCA TCGA-C8-A1HE C9orf174 SNP Missense_Mutation 9 100090372 A G 5 56 BRCA TCGA-C8-A1HE RECK SNP Nonsense_Mutation 9 36063860 C T 31 82 BRCA TCGA-C8-A1HF ZSCAN20 SNP Silent 1 33959019 C T 26 55 BRCA TCGA-C8-A1HF IFIT5 SNP Nonsense_Mutation 10 91178167 T G 61 66 BRCA TCGA-C8-A1HF GRAMD1B SNP Missense_Mutation 11 123448232 G A 40 95 BRCA TCGA-C8-A1HF MMP19 SNP Missense_Mutation 12 56236540 C A 24 51 BRCA TCGA-C8-A1HF KIF26A SNP Missense_Mutation 14 104624146 C G 22 49 BRCA TCGA-C8-A1HF FERMT2 SNP Missense_Mutation 14 53325259 C G 32 100 BRCA TCGA-C8-A1HF LOC440243 SNP Missense_Mutation 15 23572642 C T 30 51 BRCA TCGA-C8-A1HF ENSG00000237362 INS Frame_Shift_Ins 15 80736696 - GT 47 54 BRCA TCGA-C8-A1HF MYH13 SNP Missense_Mutation 17 10247167 G A 37 74 BRCA TCGA-C8-A1HF PRPF8 SNP Missense_Mutation 17 1561627 T C 51 93 BRCA TCGA-C8-A1HF TP53 SNP Missense_Mutation 17 7578395 G A 47 97 BRCA TCGA-C8-A1HF MOCOS SNP Silent 18 33785149 C T 27 34 BRCA TCGA-C8-A1HF NEDD4L SNP Missense_Mutation 18 55992246 G C 45 97 BRCA TCGA-C8-A1HF CACTIN SNP Missense_Mutation 19 3620765 C G 32 51 BRCA TCGA-C8-A1HF TJP3 SNP Silent 19 3736280 C T 23 18 BRCA TCGA-C8-A1HF CA11 SNP Silent 19 49142211 G A 36 46 BRCA TCGA-C8-A1HF LIM2 SNP Silent 19 51890455 T A 58 44 BRCA TCGA-C8-A1HF RBL1 SNP Missense_Mutation 20 35675538 A C 4 90 BRCA TCGA-C8-A1HF RPS21 SNP Silent 20 60963388 C T 30 47 BRCA TCGA-C8-A1HF RUNX1 SNP Silent 21 36206753 C T 29 59 BRCA TCGA-C8-A1HF FTCD SNP Missense_Mutation 21 47565423 T C 58 59 BRCA TCGA-C8-A1HF CNGA2 SNP Missense_Mutation 23 150912895 G A 45 62 BRCA TCGA-C8-A1HF BEND2 SNP Missense_Mutation 23 18234761 T A 61 26 BRCA TCGA-C8-A1HF ARMC8 DEL Frame_Shift_Del 3 137991869 G - 45 83 BRCA TCGA-C8-A1HF PIK3CA SNP Silent 3 178937445 T G 62 58 BRCA TCGA-C8-A1HF PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-C8-A1HF TTC29 SNP Silent 4 147741289 G A 33 65 BRCA TCGA-C8-A1HF EDNRA SNP Missense_Mutation 4 148441015 C T 27 71 BRCA TCGA-C8-A1HF ITK SNP Missense_Mutation 5 156659362 G T 33 66 BRCA TCGA-C8-A1HF PREP SNP Missense_Mutation 6 105816780 C T 29 89 BRCA TCGA-C8-A1HF LPA SNP Splice_Site 6 161016385 C T 18 53 BRCA TCGA-C8-A1HF AHCYL2 SNP Missense_Mutation 7 129008388 G C 47 81 BRCA TCGA-C8-A1HF COL27A1 SNP Missense_Mutation 9 117071730 G A 39 62 BRCA TCGA-C8-A1HG NBPF12 SNP Missense_Mutation 1 146400130 C A 20 51 BRCA TCGA-C8-A1HG CD1E SNP Silent 1 158326560 C T 32 42 BRCA TCGA-C8-A1HG ZP4 SNP Missense_Mutation 1 238048592 T C 49 83 BRCA TCGA-C8-A1HG ZDHHC6 SNP Missense_Mutation 10 114190585 C T 32 83 BRCA TCGA-C8-A1HG ETS1 SNP Silent 11 128354830 G C 35 50 BRCA TCGA-C8-A1HG SSH1 SNP Nonsense_Mutation 12 109185905 G A 47 44 BRCA TCGA-C8-A1HG NELL2 SNP Silent 12 45269656 G A 46 62 BRCA TCGA-C8-A1HG DPY19L2 SNP Nonsense_Mutation 12 64055199 C T 30 61 BRCA TCGA-C8-A1HG TRHDE SNP Missense_Mutation 12 72667271 A T 2 56 BRCA TCGA-C8-A1HG VPS13C SNP Missense_Mutation 15 62146723 G A 40 50 BRCA TCGA-C8-A1HG CORO7 SNP Nonsense_Mutation 16 4412030 C T 26 85 BRCA TCGA-C8-A1HG ESRP2 SNP Missense_Mutation 16 68265420 G A 37 67 BRCA TCGA-C8-A1HG KRT33A SNP Missense_Mutation 17 39503181 T G 55 58 BRCA TCGA-C8-A1HG KIF2B SNP Missense_Mutation 17 51900989 G C 41 54 BRCA TCGA-C8-A1HG TP53 SNP Missense_Mutation 17 7578509 A G 7 67 BRCA TCGA-C8-A1HG CTC1 SNP Silent 17 8151340 C A 22 50 BRCA TCGA-C8-A1HG FHOD3 SNP Silent 18 34238119 C T 23 46 BRCA TCGA-C8-A1HG EIF3G SNP Silent 19 10226169 G A 40 48 BRCA TCGA-C8-A1HG MUC16 SNP Silent 19 9000463 C T 23 17 BRCA TCGA-C8-A1HG CCDC115 DEL In_Frame_Del 2 131099725 CTT - 24 42 BRCA TCGA-C8-A1HG TTC31 SNP Splice_site 2 74719773 C T 27 54 BRCA TCGA-C8-A1HG ATP9A INS Frame_Shift_Ins 20 50329531 - G 55 87 BRCA TCGA-C8-A1HG COL6A2 SNP Silent 21 47539719 C T 23 35 BRCA TCGA-C8-A1HG TRMT2A SNP Missense_Mutation 22 20103765 G A 42 60 BRCA TCGA-C8-A1HG SMCR7L SNP Silent 22 39907907 G A 39 42 BRCA TCGA-C8-A1HG TRPC5 SNP Missense_Mutation 23 111155832 C T 31 99 BRCA TCGA-C8-A1HG PCDH19 SNP Silent 23 99661925 G A 40 52 BRCA TCGA-C8-A1HG P2RY13 SNP Missense_Mutation 3 151046371 A G 2 47 BRCA TCGA-C8-A1HG MAGI1 SNP Missense_Mutation 3 65361584 C T 23 89 BRCA TCGA-C8-A1HG KIAA0922 SNP Silent 4 154479493 C G 30 48 BRCA TCGA-C8-A1HG NOP14 SNP Missense_Mutation 4 2955267 C G 32 78 BRCA TCGA-C8-A1HG HGFAC SNP Silent 4 3445881 C T 27 32 BRCA TCGA-C8-A1HG EPHA5 SNP Missense_Mutation 4 66197758 G A 39 86 BRCA TCGA-C8-A1HG SPP1 SNP Missense_Mutation 4 88901223 T C 59 53 BRCA TCGA-C8-A1HG HEATR7B2 SNP Silent 5 41033173 G A 35 77 BRCA TCGA-C8-A1HG SCGN SNP Missense_Mutation 6 25701484 G A 40 59 BRCA TCGA-C8-A1HG FKSG83 SNP Missense_Mutation 6 27293123 C T 32 36 BRCA TCGA-C8-A1HG FKSG83 SNP Missense_Mutation 6 27293194 C G 29 42 BRCA TCGA-C8-A1HG DOPEY1 SNP Missense_Mutation 6 83863703 A T 3 67 BRCA TCGA-C8-A1HG C7orf41 SNP Silent 7 30197080 C T 19 47 BRCA TCGA-C8-A1HG EGFR SNP Missense_Mutation 7 55259482 C A 17 84 BRCA TCGA-C8-A1HG SEMA3D SNP Nonsense_Mutation 7 84649620 T A 63 92 BRCA TCGA-C8-A1HG RAB11FIP1 SNP Silent 8 37720512 C T 21 77 BRCA TCGA-C8-A1HG FBXO25 SNP Missense_Mutation 8 413124 C T 31 58 BRCA TCGA-C8-A1HG TOX SNP Silent 8 59852038 G A 41 50 BRCA TCGA-C8-A1HG ALDOB SNP Missense_Mutation 9 104193120 G A 45 86 BRCA TCGA-C8-A1HG TNC SNP Missense_Mutation 9 117840365 C A 30 73 BRCA TCGA-C8-A1HG DENND1A DEL In_Frame_Del 9 126429352 AAG - 13 74 BRCA TCGA-C8-A1HG DNM1 SNP Missense_Mutation 9 130996358 G A 39 99 BRCA TCGA-C8-A1HG ALDH1A1 SNP Silent 9 75540487 A C 7 50 BRCA TCGA-C8-A1HG FAM75C1 SNP Silent 9 90537720 G A 41 55 BRCA TCGA-C8-A1HI DUSP10 SNP Missense_Mutation 1 221912365 T C 52 62 BRCA TCGA-C8-A1HI TMEM59 SNP Silent 1 54509100 G C 35 62 BRCA TCGA-C8-A1HI TCF7L2 SNP Missense_Mutation 10 114910812 C T 25 96 BRCA TCGA-C8-A1HI CTNNA3 SNP Missense_Mutation 10 68940116 G A 37 84 BRCA TCGA-C8-A1HI GATA3 INS Frame_Shift_Ins 10 8115952 - C 6 76 BRCA TCGA-C8-A1HI MS4A4A SNP Missense_Mutation 11 60064763 G A 40 49 BRCA TCGA-C8-A1HI PITPNM1 SNP Silent 11 67261512 C A 17 51 BRCA TCGA-C8-A1HI MTERFD3 SNP Missense_Mutation 12 107371529 C T 18 74 BRCA TCGA-C8-A1HI RBM19 SNP Missense_Mutation 12 114296632 G T 37 57 BRCA TCGA-C8-A1HI OXA1L SNP Silent 14 23239475 C G 30 47 BRCA TCGA-C8-A1HI ACIN1 SNP Silent 14 23530619 C T 28 59 BRCA TCGA-C8-A1HI AHSA1 SNP Missense_Mutation 14 77935581 C T 19 77 BRCA TCGA-C8-A1HI FOXN3 SNP Missense_Mutation 14 89878525 G A 42 99 BRCA TCGA-C8-A1HI KIAA1024 SNP Missense_Mutation 15 79749073 T C 63 76 BRCA TCGA-C8-A1HI VPS33B SNP Missense_Mutation 15 91551102 G C 33 74 BRCA TCGA-C8-A1HI XPO6 SNP Missense_Mutation 16 28167638 C T 23 84 BRCA TCGA-C8-A1HI IL32 SNP Silent 16 3119287 C T 19 31 BRCA TCGA-C8-A1HI KIF19 SNP Silent 17 72350926 C T 22 53 BRCA TCGA-C8-A1HI C17orf28 SNP Silent 17 72952020 C T 29 55 BRCA TCGA-C8-A1HI C17orf74 SNP Splice_Site 17 7329370 G C 36 69 BRCA TCGA-C8-A1HI MRPL38 SNP Missense_Mutation 17 73898161 G C 48 51 BRCA TCGA-C8-A1HI EMR2 SNP Missense_Mutation 19 14863285 C T 25 53 BRCA TCGA-C8-A1HI OR7A5 SNP Missense_Mutation 19 14938267 C A 25 53 BRCA TCGA-C8-A1HI CYP2S1 SNP Missense_Mutation 19 41711922 C A 18 49 BRCA TCGA-C8-A1HI KLK4 SNP Missense_Mutation 19 51410279 C A 28 43 BRCA TCGA-C8-A1HI NCKAP5 SNP Silent 2 133539971 T C 63 48 BRCA TCGA-C8-A1HI RAPGEF4 SNP Silent 2 173825508 C T 19 73 BRCA TCGA-C8-A1HI CNGA3 SNP Missense_Mutation 2 99013403 G T 36 45 BRCA TCGA-C8-A1HI DEFB129 DEL In_Frame_Del 20 210400 AGA - 7 47 BRCA TCGA-C8-A1HI HCFC1 SNP Missense_Mutation 23 153215007 T C 62 86 BRCA TCGA-C8-A1HI C3orf22 SNP Missense_Mutation 3 126268811 C T 27 65 BRCA TCGA-C8-A1HI IL20RB SNP Splice_Site 3 136699172 G A 35 50 BRCA TCGA-C8-A1HI TMA16 SNP Missense_Mutation 4 164428259 A T 1 51 BRCA TCGA-C8-A1HI CYB5R4 SNP Missense_Mutation 6 84644368 C T 19 87 BRCA TCGA-C8-A1HI SERPINE1 SNP Splice_Site 7 100777176 T C 57 84 BRCA TCGA-C8-A1HI AASS SNP Missense_Mutation 7 121741712 G A 35 90 BRCA TCGA-C8-A1HI LMTK2 SNP Silent 7 97823713 C T 19 43 BRCA TCGA-C8-A1HI TMEM246 SNP Missense_Mutation 9 104238875 C T 27 80 BRCA TCGA-C8-A1HJ CLCN6 SNP Missense_Mutation 1 11898845 T G 53 40 BRCA TCGA-C8-A1HJ ADAM30 SNP Missense_Mutation 1 120436760 C T 32 50 BRCA TCGA-C8-A1HJ CRNN SNP Missense_Mutation 1 152382842 G T 44 55 BRCA TCGA-C8-A1HJ UBQLN4 SNP Missense_Mutation 1 156018375 C G 29 90 BRCA TCGA-C8-A1HJ APOA1BP SNP Silent 1 156562240 G C 47 72 BRCA TCGA-C8-A1HJ CRP SNP Missense_Mutation 1 159683842 C A 28 55 BRCA TCGA-C8-A1HJ UAP1 SNP Silent 1 162560143 A G 3 64 BRCA TCGA-C8-A1HJ NCF2 DEL Frame_Shift_Del 1 183525283 TG - 55 56 BRCA TCGA-C8-A1HJ LRRN2 DEL In_Frame_Del 1 204588018 CCGTGGAGA - 26 86 BRCA TCGA-C8-A1HJ USH2A SNP Missense_Mutation 1 216173838 C G 20 88 BRCA TCGA-C8-A1HJ ESRRG SNP Missense_Mutation 1 216850481 C A 21 100 BRCA TCGA-C8-A1HJ OBSCN SNP Silent 1 228464918 A C 7 52 BRCA TCGA-C8-A1HJ KIF26B SNP Missense_Mutation 1 245766051 C T 26 87 BRCA TCGA-C8-A1HJ OR2T2 DEL In_Frame_Del 1 248616708 TGCGTG - 55 52 BRCA TCGA-C8-A1HJ ARHGEF16 SNP Missense_Mutation 1 3397018 T C 54 56 BRCA TCGA-C8-A1HJ PABPC4 SNP Missense_Mutation 1 40030439 C T 22 84 BRCA TCGA-C8-A1HJ HOOK1 SNP Missense_Mutation 1 60294515 G C 41 64 BRCA TCGA-C8-A1HJ FAM160B1 SNP Missense_Mutation 10 116595973 C G 17 86 BRCA TCGA-C8-A1HJ CHAT SNP Silent 10 50863479 T G 55 17 BRCA TCGA-C8-A1HJ HK1 SNP Silent 10 71144575 C T 25 58 BRCA TCGA-C8-A1HJ SFMBT2 SNP Missense_Mutation 10 7290590 G C 47 85 BRCA TCGA-C8-A1HJ IFIT1 DEL In_Frame_Del 10 91162494 AAA - 9 59 BRCA TCGA-C8-A1HJ ZFYVE27 SNP Missense_Mutation 10 99508101 G C 33 58 BRCA TCGA-C8-A1HJ MUC2 SNP Missense_Mutation 11 1086332 A T 11 52 BRCA TCGA-C8-A1HJ KCNJ5 SNP Missense_Mutation 11 128781958 G A 43 100 BRCA TCGA-C8-A1HJ BRSK2 SNP Missense_Mutation 11 1459590 C A 28 66 BRCA TCGA-C8-A1HJ CD44 DEL Frame_Shift_Del 11 35229691 CAAATCCA - 25 57 BRCA TCGA-C8-A1HJ LRRC4C SNP Missense_Mutation 11 40137802 A G 16 76 BRCA TCGA-C8-A1HJ OR4C15 SNP Silent 11 55321992 A G 6 38 BRCA TCGA-C8-A1HJ SCGB2A1 SNP Missense_Mutation 11 61977971 G C 33 45 BRCA TCGA-C8-A1HJ ZBTB3 SNP Missense_Mutation 11 62520833 C G 28 94 BRCA TCGA-C8-A1HJ RBMXL2 SNP Silent 11 7110465 C G 30 45 BRCA TCGA-C8-A1HJ FAT3 SNP Missense_Mutation 11 92577795 G C 34 66 BRCA TCGA-C8-A1HJ CCDC82 SNP Missense_Mutation 11 96104224 G C 37 83 BRCA TCGA-C8-A1HJ RPLP0 SNP Silent 12 120634624 T C 56 52 BRCA TCGA-C8-A1HJ KIAA1467 SNP Silent 12 13208585 G T 43 49 BRCA TCGA-C8-A1HJ WBP11 SNP Missense_Mutation 12 14946765 A C 7 60 BRCA TCGA-C8-A1HJ PROZ SNP Nonsense_Mutation 13 113826030 C T 21 55 BRCA TCGA-C8-A1HJ LAMP1 SNP Missense_Mutation 13 113965104 C A 21 51 BRCA TCGA-C8-A1HJ COG3 SNP Missense_Mutation 13 46103952 G A 46 75 BRCA TCGA-C8-A1HJ RNF219 SNP Missense_Mutation 13 79213121 T A 50 60 BRCA TCGA-C8-A1HJ IGHG3 SNP Silent 14 106237463 A T 6 65 BRCA TCGA-C8-A1HJ RPS6KL1 SNP Silent 14 75376355 C T 28 49 BRCA TCGA-C8-A1HJ AQR SNP Missense_Mutation 15 35202492 C T 20 81 BRCA TCGA-C8-A1HJ CGNL1 SNP Silent 15 57816868 C G 31 45 BRCA TCGA-C8-A1HJ OTOA SNP Missense_Mutation 16 21728342 A G 9 66 BRCA TCGA-C8-A1HJ RRN3P1 SNP Splice_Site 16 21813956 C G 18 64 BRCA TCGA-C8-A1HJ HS3ST4 SNP Missense_Mutation 16 26147267 G C 47 99 BRCA TCGA-C8-A1HJ ITGAM SNP Missense_Mutation 16 31282343 T C 56 81 BRCA TCGA-C8-A1HJ FOXN1 SNP Missense_Mutation 17 26862056 G C 35 93 BRCA TCGA-C8-A1HJ SPPL2C SNP Silent 17 43924168 C G 21 57 BRCA TCGA-C8-A1HJ ACSF2 DEL Splice_Site 17 48540911 GAGG - 33 58 BRCA TCGA-C8-A1HJ CYB561 SNP Missense_Mutation 17 61511891 A T 7 42 BRCA TCGA-C8-A1HJ TP53 SNP Nonsense_Mutation 17 7578263 G A 39 67 BRCA TCGA-C8-A1HJ ALOX15B SNP Silent 17 7951170 T C 55 37 BRCA TCGA-C8-A1HJ NPLOC4 SNP Silent 17 79526293 T G 55 68 BRCA TCGA-C8-A1HJ CEP192 SNP Missense_Mutation 18 13057640 G A 38 81 BRCA TCGA-C8-A1HJ ATG4D SNP Missense_Mutation 19 10659646 T G 58 90 BRCA TCGA-C8-A1HJ ASF1B SNP Missense_Mutation 19 14247177 C G 20 42 BRCA TCGA-C8-A1HJ PKN1 SNP Silent 19 14551135 G A 34 62 BRCA TCGA-C8-A1HJ ZNF66P SNP Missense_Mutation 19 20989623 T G 64 73 BRCA TCGA-C8-A1HJ ZNF607 SNP Missense_Mutation 19 38189435 A T 3 67 BRCA TCGA-C8-A1HJ SRRM5 SNP Missense_Mutation 19 44116613 C T 27 51 BRCA TCGA-C8-A1HJ CARD8 SNP Missense_Mutation 19 48715054 T A 56 60 BRCA TCGA-C8-A1HJ ZNF544 SNP Missense_Mutation 19 58758105 C G 32 66 BRCA TCGA-C8-A1HJ EMR1 SNP Missense_Mutation 19 6926467 A G 12 78 BRCA TCGA-C8-A1HJ TTN SNP Missense_Mutation 2 179583460 G A 34 100 BRCA TCGA-C8-A1HJ C20orf26 SNP Silent 20 20278908 C A 29 61 BRCA TCGA-C8-A1HJ IDH3B SNP Missense_Mutation 20 2644347 C A 17 82 BRCA TCGA-C8-A1HJ ATRN SNP Missense_Mutation 20 3553410 T C 54 93 BRCA TCGA-C8-A1HJ RUNX1 SNP Missense_Mutation 21 36231819 A G 15 87 BRCA TCGA-C8-A1HJ TSSK2 SNP Silent 22 19119536 C T 29 66 BRCA TCGA-C8-A1HJ LZTR1 SNP Splice_Site 22 21348559 G A 44 81 BRCA TCGA-C8-A1HJ LZTR1 SNP Silent 22 21351303 G T 42 62 BRCA TCGA-C8-A1HJ NCAPH2 SNP Missense_Mutation 22 50957642 C T 26 55 BRCA TCGA-C8-A1HJ SAGE1 SNP Missense_Mutation 23 134988615 T C 58 50 BRCA TCGA-C8-A1HJ ATP2B3 SNP Missense_Mutation 23 152808551 G A 40 65 BRCA TCGA-C8-A1HJ RAI2 SNP Missense_Mutation 23 17818732 A T 11 86 BRCA TCGA-C8-A1HJ SLC38A5 SNP Missense_Mutation 23 48326122 C A 22 61 BRCA TCGA-C8-A1HJ FAM86JP SNP Splice_Site 3 125647336 A G 7 62 BRCA TCGA-C8-A1HJ DZIP1L SNP Missense_Mutation 3 137781680 T A 63 50 BRCA TCGA-C8-A1HJ ATR SNP Missense_Mutation 3 142285029 T G 51 82 BRCA TCGA-C8-A1HJ SPATA16 SNP Missense_Mutation 3 172607409 C T 31 70 BRCA TCGA-C8-A1HJ CDCP1 SNP Missense_Mutation 3 45159927 A G 10 67 BRCA TCGA-C8-A1HJ ITIH1 SNP Missense_Mutation 3 52814374 C G 29 60 BRCA TCGA-C8-A1HJ GRIA2 SNP Missense_Mutation 4 158233956 C A 32 69 BRCA TCGA-C8-A1HJ CATSPER3 SNP Missense_Mutation 5 134346079 C T 17 49 BRCA TCGA-C8-A1HJ GPR151 SNP Missense_Mutation 5 145895299 G T 42 56 BRCA TCGA-C8-A1HJ CYFIP2 SNP Missense_Mutation 5 156752564 C G 19 74 BRCA TCGA-C8-A1HJ RUFY1 SNP Missense_Mutation 5 178994482 G A 37 99 BRCA TCGA-C8-A1HJ CDK19 SNP Splice_site 6 110943369 A C 6 70 BRCA TCGA-C8-A1HJ REV3L SNP Missense_Mutation 6 111695002 G A 46 75 BRCA TCGA-C8-A1HJ CCDC170 SNP Silent 6 151939084 G C 47 70 BRCA TCGA-C8-A1HJ PACRG SNP Silent 6 163483345 C T 23 95 BRCA TCGA-C8-A1HJ C6orf118 SNP Missense_Mutation 6 165715464 G A 40 67 BRCA TCGA-C8-A1HJ RPS6KA2 SNP Missense_Mutation 6 166833389 A C 2 47 BRCA TCGA-C8-A1HJ SYNGAP1 SNP Missense_Mutation 6 33409034 G C 33 81 BRCA TCGA-C8-A1HJ CPNE5 SNP Missense_Mutation 6 36710197 G C 39 68 BRCA TCGA-C8-A1HJ FGD2 SNP Missense_Mutation 6 36982782 C T 23 72 BRCA TCGA-C8-A1HJ ENPP5 SNP Silent 6 46135385 C A 26 49 BRCA TCGA-C8-A1HJ RCAN2 SNP Missense_Mutation 6 46216493 G C 45 97 BRCA TCGA-C8-A1HJ TMEM209 SNP Missense_Mutation 7 129841839 A T 13 86 BRCA TCGA-C8-A1HJ PKHD1L1 SNP Missense_Mutation 8 110457789 T G 63 44 BRCA TCGA-C8-A1HJ PKHD1L1 SNP Missense_Mutation 8 110509244 T A 56 54 BRCA TCGA-C8-A1HJ ENPP2 SNP Missense_Mutation 8 120596251 C A 25 98 BRCA TCGA-C8-A1HJ FAM83A SNP Silent 8 124195570 T G 53 68 BRCA TCGA-C8-A1HJ GSDMC SNP Missense_Mutation 8 130760832 C A 24 49 BRCA TCGA-C8-A1HJ WDR34 SNP Missense_Mutation 9 131398586 T C 59 88 BRCA TCGA-C8-A1HK GON4L SNP Missense_Mutation 1 155733322 C T 29 93 BRCA TCGA-C8-A1HK CDK11A SNP Missense_Mutation 1 1635354 C A 21 86 BRCA TCGA-C8-A1HK OBSCN SNP Silent 1 228451893 G C 45 67 BRCA TCGA-C8-A1HK KIAA1522 SNP Missense_Mutation 1 33238473 G C 33 65 BRCA TCGA-C8-A1HK BCL10 SNP Missense_Mutation 1 85736385 G C 38 53 BRCA TCGA-C8-A1HK TAF5 SNP Missense_Mutation 10 105145226 G A 43 84 BRCA TCGA-C8-A1HK O3FAR1 SNP Missense_Mutation 10 95347070 C T 23 89 BRCA TCGA-C8-A1HK OR4C11 SNP Silent 11 55371451 G A 45 55 BRCA TCGA-C8-A1HK OR5L1 SNP Silent 11 55579182 A G 1 40 BRCA TCGA-C8-A1HK OR5AN1 SNP Missense_Mutation 11 59132707 T C 58 74 BRCA TCGA-C8-A1HK AHNAK SNP Missense_Mutation 11 62298678 C T 32 80 BRCA TCGA-C8-A1HK TAS2R10 SNP Missense_Mutation 12 10978187 C A 20 49 BRCA TCGA-C8-A1HK MLL2 SNP Missense_Mutation 12 49437197 C G 32 68 BRCA TCGA-C8-A1HK KRT78 SNP Missense_Mutation 12 53233561 C T 22 65 BRCA TCGA-C8-A1HK TMCC3 DEL Frame_Shift_Del 12 94976125 CG - 31 88 BRCA TCGA-C8-A1HK SLC10A2 SNP Missense_Mutation 13 103701791 C T 31 100 BRCA TCGA-C8-A1HK HECTD1 SNP Silent 14 31574620 C T 23 48 BRCA TCGA-C8-A1HK SYNE2 SNP Missense_Mutation 14 64608677 G T 46 63 BRCA TCGA-C8-A1HK CCNF SNP Missense_Mutation 16 2493715 G C 33 54 BRCA TCGA-C8-A1HK GSG1L SNP Missense_Mutation 16 27974518 T A 64 38 BRCA TCGA-C8-A1HK GNAO1 SNP Missense_Mutation 16 56388909 G A 37 100 BRCA TCGA-C8-A1HK PLCG2 SNP Missense_Mutation 16 81971437 A G 8 89 BRCA TCGA-C8-A1HK COG1 SNP Missense_Mutation 17 71193052 C G 25 69 BRCA TCGA-C8-A1HK TP53 SNP Nonsense_Mutation 17 7577100 T A 54 64 BRCA TCGA-C8-A1HK DNAH17 SNP Splice_Site 17 76567116 C G 24 79 BRCA TCGA-C8-A1HK KIRREL2 SNP Silent 19 36351484 C T 19 51 BRCA TCGA-C8-A1HK PEG3 SNP Missense_Mutation 19 57325285 C T 29 56 BRCA TCGA-C8-A1HK MBD5 SNP Missense_Mutation 2 149247274 C T 26 96 BRCA TCGA-C8-A1HK TTN SNP Silent 2 179479656 G A 35 55 BRCA TCGA-C8-A1HK SMARCAL1 SNP Missense_Mutation 2 217279872 C G 29 52 BRCA TCGA-C8-A1HK SMARCAL1 SNP Missense_Mutation 2 217279969 C G 32 52 BRCA TCGA-C8-A1HK HEATR5B SNP Missense_Mutation 2 37229509 G A 37 94 BRCA TCGA-C8-A1HK SRBD1 SNP Missense_Mutation 2 45773940 C G 24 95 BRCA TCGA-C8-A1HK WDPCP SNP Missense_Mutation 2 63605609 G T 41 94 BRCA TCGA-C8-A1HK CPXM1 SNP Missense_Mutation 20 2777256 C T 27 96 BRCA TCGA-C8-A1HK FAM65C SNP Missense_Mutation 20 49236628 G T 46 50 BRCA TCGA-C8-A1HK CTAG2 SNP Silent 23 153881598 C T 27 52 BRCA TCGA-C8-A1HK PHKA2 SNP Missense_Mutation 23 18949833 C A 32 98 BRCA TCGA-C8-A1HK PHF8 SNP Missense_Mutation 23 54026388 C T 31 97 BRCA TCGA-C8-A1HK C3orf20 SNP Missense_Mutation 3 14803016 G A 48 57 BRCA TCGA-C8-A1HK PLD1 SNP Missense_Mutation 3 171417579 C G 29 98 BRCA TCGA-C8-A1HK TTLL3 SNP Silent 3 9876579 G A 45 60 BRCA TCGA-C8-A1HK N4BP2 SNP Missense_Mutation 4 40122051 T C 50 58 BRCA TCGA-C8-A1HK ATP10D SNP Missense_Mutation 4 47514627 G T 45 52 BRCA TCGA-C8-A1HK UGT2B28 SNP Missense_Mutation 4 70146552 G C 33 31 BRCA TCGA-C8-A1HK ENAM SNP Silent 4 71508643 T C 52 54 BRCA TCGA-C8-A1HK PAM SNP Splice_site 5 102353039 A G 6 55 BRCA TCGA-C8-A1HK BASP1 SNP Missense_Mutation 5 17275866 C A 22 50 BRCA TCGA-C8-A1HK CDK19 SNP Missense_Mutation 6 110944513 C G 29 99 BRCA TCGA-C8-A1HK MTHFD1L SNP Missense_Mutation 6 151208992 G T 33 59 BRCA TCGA-C8-A1HK IGF2R DEL Frame_Shift_Del 6 160510276 TT - 52 86 BRCA TCGA-C8-A1HK INTS1 SNP Silent 7 1529306 C T 31 41 BRCA TCGA-C8-A1HK DDX56 SNP Missense_Mutation 7 44612192 C G 32 92 BRCA TCGA-C8-A1HL SPAG17 SNP Missense_Mutation 1 118693979 G A 42 52 BRCA TCGA-C8-A1HL EPHA2 SNP Silent 1 16458583 G A 44 80 BRCA TCGA-C8-A1HL IRF6 SNP Missense_Mutation 1 209969822 G T 38 68 BRCA TCGA-C8-A1HL GREM2 SNP Missense_Mutation 1 240656415 C T 27 66 BRCA TCGA-C8-A1HL ARID1A DEL Frame_Shift_Del 1 27087893 GGCCACCCAG - 39 97 BRCA TCGA-C8-A1HL SEMA4G SNP Missense_Mutation 10 102743085 C T 23 93 BRCA TCGA-C8-A1HL NOLC1 SNP Missense_Mutation 10 103920683 C T 30 85 BRCA TCGA-C8-A1HL GATA3 DEL Frame_Shift_Del 10 8115872 C - 32 47 BRCA TCGA-C8-A1HL GATA3 DEL Frame_Shift_Del 10 8115874 C - 31 85 BRCA TCGA-C8-A1HL CDHR1 SNP Missense_Mutation 10 85973973 C T 27 84 BRCA TCGA-C8-A1HL CDHR5 SNP Silent 11 624855 C T 25 63 BRCA TCGA-C8-A1HL PELI3 SNP Nonsense_Mutation 11 66236347 G T 41 61 BRCA TCGA-C8-A1HL DDX51 SNP Splice_Site 12 132626394 C G 19 64 BRCA TCGA-C8-A1HL ABCC4 SNP Missense_Mutation 13 95696530 C T 17 99 BRCA TCGA-C8-A1HL SPTB SNP Missense_Mutation 14 65237718 G A 38 83 BRCA TCGA-C8-A1HL LRRC28 SNP Missense_Mutation 15 99874160 G T 33 96 BRCA TCGA-C8-A1HL SPAG5 SNP Missense_Mutation 17 26920013 G T 45 64 BRCA TCGA-C8-A1HL PLEKHM1 SNP Silent 17 43545835 G A 35 56 BRCA TCGA-C8-A1HL DNAH2 SNP Missense_Mutation 17 7664159 C T 23 58 BRCA TCGA-C8-A1HL ASXL3 SNP Missense_Mutation 18 31326084 G T 34 72 BRCA TCGA-C8-A1HL LOC100287226 SNP Missense_Mutation 19 22497906 A G 13 53 BRCA TCGA-C8-A1HL KLK4 SNP Silent 19 51411758 C T 19 49 BRCA TCGA-C8-A1HL VSTM1 SNP Missense_Mutation 19 54545202 C G 28 57 BRCA TCGA-C8-A1HL NLRP8 SNP Silent 19 56490781 C A 24 51 BRCA TCGA-C8-A1HL NT5C1B SNP Missense_Mutation 2 18766032 G A 43 33 BRCA TCGA-C8-A1HL SIRPB1 SNP Missense_Mutation 20 1559046 C T 23 41 BRCA TCGA-C8-A1HL DEFB118 SNP Missense_Mutation 20 29960765 G T 46 70 BRCA TCGA-C8-A1HL GLA SNP Missense_Mutation 23 100658816 G A 37 60 BRCA TCGA-C8-A1HL BRS3 SNP Missense_Mutation 23 135574243 C A 18 50 BRCA TCGA-C8-A1HL ADAMTS16 SNP Silent 5 5237179 T C 49 63 BRCA TCGA-C8-A1HL PDE4D SNP Missense_Mutation 5 58285743 G A 40 80 BRCA TCGA-C8-A1HL MCM7 SNP Missense_Mutation 7 99696921 C T 25 53 BRCA TCGA-C8-A1HL NUP214 SNP Missense_Mutation 9 134072801 C T 32 75 BRCA TCGA-C8-A1HL TRPM3 SNP Nonsense_Mutation 9 73151247 G T 42 53 BRCA TCGA-C8-A1HM PTPN22 SNP Missense_Mutation 1 114380359 C G 29 54 BRCA TCGA-C8-A1HM AP4B1 SNP Missense_Mutation 1 114445417 C G 32 96 BRCA TCGA-C8-A1HM ATP1A1 SNP Missense_Mutation 1 116941293 G T 45 59 BRCA TCGA-C8-A1HM RPS27 SNP Missense_Mutation 1 153963702 G C 45 52 BRCA TCGA-C8-A1HM NES SNP Missense_Mutation 1 156639318 C A 29 50 BRCA TCGA-C8-A1HM NES SNP Missense_Mutation 1 156641606 C G 29 54 BRCA TCGA-C8-A1HM OR6P1 SNP Silent 1 158532579 C T 32 51 BRCA TCGA-C8-A1HM OR10J3 SNP Missense_Mutation 1 159283656 G C 41 75 BRCA TCGA-C8-A1HM SLC9C2 SNP Silent 1 173493933 G A 45 50 BRCA TCGA-C8-A1HM PADI3 SNP Missense_Mutation 1 17599840 G C 33 69 BRCA TCGA-C8-A1HM SHCBP1L SNP Missense_Mutation 1 182898837 C G 32 81 BRCA TCGA-C8-A1HM LAMC1 SNP Silent 1 183097764 G A 33 62 BRCA TCGA-C8-A1HM PLA2G4A SNP Missense_Mutation 1 186908212 G T 45 100 BRCA TCGA-C8-A1HM PLA2G4A SNP Missense_Mutation 1 186925342 G C 33 96 BRCA TCGA-C8-A1HM KCNT2 SNP Nonsense_Mutation 1 196397237 G A 47 100 BRCA TCGA-C8-A1HM ASPM SNP Silent 1 197073413 G C 45 50 BRCA TCGA-C8-A1HM ZNF281 SNP Missense_Mutation 1 200377516 C G 32 98 BRCA TCGA-C8-A1HM RAB3GAP2 SNP Missense_Mutation 1 220330691 G C 41 60 BRCA TCGA-C8-A1HM FBXO28 SNP Missense_Mutation 1 224301869 G A 41 67 BRCA TCGA-C8-A1HM PARP1 SNP Silent 1 226568860 C T 30 58 BRCA TCGA-C8-A1HM C1orf95 SNP Silent 1 226736785 C G 29 59 BRCA TCGA-C8-A1HM SDCCAG8 SNP Missense_Mutation 1 243449584 C G 32 67 BRCA TCGA-C8-A1HM PANK4 SNP Missense_Mutation 1 2447048 G T 33 56 BRCA TCGA-C8-A1HM AHCTF1 SNP Missense_Mutation 1 247067320 C G 29 55 BRCA TCGA-C8-A1HM OR2M4 SNP Silent 1 248402510 C T 32 52 BRCA TCGA-C8-A1HM EIF2C3 SNP Missense_Mutation 1 36479639 G C 33 100 BRCA TCGA-C8-A1HM ERMAP SNP Missense_Mutation 1 43305956 G A 39 55 BRCA TCGA-C8-A1HM SLC2A1 SNP Silent 1 43393372 G A 33 51 BRCA TCGA-C8-A1HM BEND5 SNP Missense_Mutation 1 49193689 C G 32 96 BRCA TCGA-C8-A1HM RPE65 SNP Nonsense_Mutation 1 68895512 C A 29 100 BRCA TCGA-C8-A1HM ZRANB2 SNP Missense_Mutation 1 71544146 C A 17 97 BRCA TCGA-C8-A1HM GBP7 SNP Missense_Mutation 1 89607275 G C 41 49 BRCA TCGA-C8-A1HM ABCA4 SNP Missense_Mutation 1 94486873 C A 30 61 BRCA TCGA-C8-A1HM HPSE2 SNP Silent 10 100374727 C G 29 62 BRCA TCGA-C8-A1HM PDCD11 SNP Nonsense_Mutation 10 105200072 G T 33 53 BRCA TCGA-C8-A1HM ECHDC3 SNP Missense_Mutation 10 11791544 G C 41 67 BRCA TCGA-C8-A1HM HSPA14 SNP Missense_Mutation 10 14891732 C G 32 83 BRCA TCGA-C8-A1HM NEBL SNP Missense_Mutation 10 21186095 C T 29 64 BRCA TCGA-C8-A1HM MTPAP SNP Missense_Mutation 10 30602867 G C 33 54 BRCA TCGA-C8-A1HM KLF6 SNP Missense_Mutation 10 3824269 C G 32 62 BRCA TCGA-C8-A1HM SFTPD SNP Missense_Mutation 10 81706230 C A 32 59 BRCA TCGA-C8-A1HM NRG3 SNP Missense_Mutation 10 84738797 C G 28 70 BRCA TCGA-C8-A1HM BLNK SNP Silent 10 97983711 G A 45 70 BRCA TCGA-C8-A1HM PI4K2A SNP Missense_Mutation 10 99416641 G A 45 100 BRCA TCGA-C8-A1HM EXPH5 SNP Missense_Mutation 11 108384923 C G 29 57 BRCA TCGA-C8-A1HM BCO2 SNP Nonsense_Mutation 11 112086971 C G 29 74 BRCA TCGA-C8-A1HM H2AFX SNP Silent 11 118965982 G A 39 54 BRCA TCGA-C8-A1HM MICAL2 SNP Missense_Mutation 11 12263947 C T 27 66 BRCA TCGA-C8-A1HM BSX SNP Missense_Mutation 11 122850093 T A 64 91 BRCA TCGA-C8-A1HM ETS1 SNP Silent 11 128350168 G A 35 63 BRCA TCGA-C8-A1HM OR4C16 SNP Missense_Mutation 11 55340352 G T 41 49 BRCA TCGA-C8-A1HM OR5M8 SNP Silent 11 56258639 G A 33 50 BRCA TCGA-C8-A1HM CTNND1 SNP Missense_Mutation 11 57563948 C G 20 85 BRCA TCGA-C8-A1HM OR52E4 SNP Nonsense_Mutation 11 5905606 G A 41 56 BRCA TCGA-C8-A1HM SCGB1D2 SNP Silent 11 62009821 C T 32 53 BRCA TCGA-C8-A1HM FERMT3 SNP Missense_Mutation 11 63990956 G T 42 84 BRCA TCGA-C8-A1HM MEN1 SNP Silent 11 64577195 G C 45 50 BRCA TCGA-C8-A1HM OR2D3 SNP Missense_Mutation 11 6942948 C A 30 51 BRCA TCGA-C8-A1HM PAK1 SNP Missense_Mutation 11 77036380 C G 29 51 BRCA TCGA-C8-A1HM ODZ4 SNP Missense_Mutation 11 78380233 C A 22 88 BRCA TCGA-C8-A1HM GPR83 SNP Missense_Mutation 11 94134208 G A 40 53 BRCA TCGA-C8-A1HM ZNF143 SNP Missense_Mutation 11 9516249 G C 33 56 BRCA TCGA-C8-A1HM HCFC2 SNP Missense_Mutation 12 104461863 G C 33 100 BRCA TCGA-C8-A1HM ANAPC7 SNP Missense_Mutation 12 110815414 C T 31 99 BRCA TCGA-C8-A1HM GCN1L1 SNP Nonsense_Mutation 12 120575105 G A 47 95 BRCA TCGA-C8-A1HM OASL SNP Missense_Mutation 12 121469412 G T 33 43 BRCA TCGA-C8-A1HM TMEM120B SNP Splice_Site 12 122186349 G A 44 90 BRCA TCGA-C8-A1HM VPS33A SNP Missense_Mutation 12 122723195 G C 41 87 BRCA TCGA-C8-A1HM KNTC1 SNP Nonsense_Mutation 12 123089155 G T 45 79 BRCA TCGA-C8-A1HM SNRNP35 SNP Nonsense_Mutation 12 123950359 C G 29 97 BRCA TCGA-C8-A1HM SNRNP35 SNP Silent 12 123950612 C G 32 38 BRCA TCGA-C8-A1HM SLCO1B1 SNP Nonsense_Mutation 12 21353576 C T 29 58 BRCA TCGA-C8-A1HM SCAF11 SNP Missense_Mutation 12 46320776 G A 47 88 BRCA TCGA-C8-A1HM NDUFA9 SNP Missense_Mutation 12 4796219 G A 38 92 BRCA TCGA-C8-A1HM COL2A1 SNP Splice_Site 12 48387775 A T 14 88 BRCA TCGA-C8-A1HM MLL2 SNP Missense_Mutation 12 49426957 C A 18 66 BRCA TCGA-C8-A1HM SMARCC2 SNP Missense_Mutation 12 56561849 C T 32 94 BRCA TCGA-C8-A1HM LRP1 SNP Nonsense_Mutation 12 57592378 G T 45 73 BRCA TCGA-C8-A1HM GRIP1 SNP Missense_Mutation 12 66742819 C T 32 77 BRCA TCGA-C8-A1HM NUP107 SNP Missense_Mutation 12 69103830 G A 33 82 BRCA TCGA-C8-A1HM PTPN6 SNP Missense_Mutation 12 7064127 C T 29 67 BRCA TCGA-C8-A1HM CD163L1 SNP Missense_Mutation 12 7550886 C G 32 43 BRCA TCGA-C8-A1HM MCF2L SNP Silent 13 113719306 C T 31 50 BRCA TCGA-C8-A1HM F7 SNP Missense_Mutation 13 113772894 G A 37 57 BRCA TCGA-C8-A1HM ATP8A2 SNP Silent 13 26535727 G C 45 63 BRCA TCGA-C8-A1HM AKAP11 SNP Nonsense_Mutation 13 42882612 C T 29 62 BRCA TCGA-C8-A1HM FARP1 SNP Nonsense_Mutation 13 98865603 C G 29 81 BRCA TCGA-C8-A1HM HSP90AA1 SNP Missense_Mutation 14 102549629 C G 24 60 BRCA TCGA-C8-A1HM OR4K1 SNP Silent 14 20404299 C T 26 36 BRCA TCGA-C8-A1HM TEP1 SNP Silent 14 20856087 G C 35 53 BRCA TCGA-C8-A1HM METTL17 SNP Missense_Mutation 14 21464955 G A 40 80 BRCA TCGA-C8-A1HM CHD8 SNP Missense_Mutation 14 21867782 G C 34 99 BRCA TCGA-C8-A1HM SNX6 SNP Silent 14 35077312 G A 45 100 BRCA TCGA-C8-A1HM COQ6 SNP Missense_Mutation 14 74428017 C A 32 56 BRCA TCGA-C8-A1HM PPP4R4 SNP Splice_Site 14 94744955 G C 33 80 BRCA TCGA-C8-A1HM TJP1 SNP Missense_Mutation 15 30053811 C G 32 59 BRCA TCGA-C8-A1HM SPRED1 SNP Missense_Mutation 15 38614513 G C 33 100 BRCA TCGA-C8-A1HM GALK2 SNP Missense_Mutation 15 49509389 G A 33 88 BRCA TCGA-C8-A1HM UNC13C SNP Nonsense_Mutation 15 54919234 C T 29 100 BRCA TCGA-C8-A1HM MYO1E SNP Missense_Mutation 15 59515261 C G 32 98 BRCA TCGA-C8-A1HM VPS13C SNP Missense_Mutation 15 62170937 C G 29 55 BRCA TCGA-C8-A1HM VPS13C SNP Missense_Mutation 15 62204183 C T 29 85 BRCA TCGA-C8-A1HM NEIL1 SNP Missense_Mutation 15 75641571 C T 23 61 BRCA TCGA-C8-A1HM HOMER2 SNP Missense_Mutation 15 83518649 C T 32 94 BRCA TCGA-C8-A1HM SLC28A1 SNP Missense_Mutation 15 85431031 C G 32 56 BRCA TCGA-C8-A1HM HAPLN3 SNP Missense_Mutation 15 89424920 G A 43 90 BRCA TCGA-C8-A1HM CIITA SNP Missense_Mutation 16 11009480 C T 19 58 BRCA TCGA-C8-A1HM MKL2 SNP Missense_Mutation 16 14334208 G A 45 100 BRCA TCGA-C8-A1HM SYT17 SNP Missense_Mutation 16 19191817 C T 29 83 BRCA TCGA-C8-A1HM RPS2 SNP Missense_Mutation 16 2014292 G T 33 58 BRCA TCGA-C8-A1HM ACSM1 SNP Silent 16 20636769 G C 46 72 BRCA TCGA-C8-A1HM ENSG00000232055 SNP Silent 16 2972988 G A 33 53 BRCA TCGA-C8-A1HM CCDC64B SNP Missense_Mutation 16 3081079 C T 19 74 BRCA TCGA-C8-A1HM NLRC5 SNP Splice_site 16 57075485 G A 37 70 BRCA TCGA-C8-A1HM FAM65A SNP Missense_Mutation 16 67577132 G C 41 100 BRCA TCGA-C8-A1HM FAM65A SNP Missense_Mutation 16 67578233 G A 41 98 BRCA TCGA-C8-A1HM CIRH1A SNP Missense_Mutation 16 69191112 C G 29 54 BRCA TCGA-C8-A1HM PMFBP1 SNP Missense_Mutation 16 72188209 C G 32 55 BRCA TCGA-C8-A1HM ADAMTS18 SNP Missense_Mutation 16 77375627 C T 32 96 BRCA TCGA-C8-A1HM NARFL SNP Missense_Mutation 16 787197 C G 32 50 BRCA TCGA-C8-A1HM MYH2 SNP Silent 17 10435109 C T 29 46 BRCA TCGA-C8-A1HM ADPRM SNP Missense_Mutation 17 10608733 G C 45 97 BRCA TCGA-C8-A1HM DNAH9 SNP Missense_Mutation 17 11543625 G A 47 80 BRCA TCGA-C8-A1HM ELAC2 SNP Silent 17 12897061 G A 41 53 BRCA TCGA-C8-A1HM PRPF8 SNP Missense_Mutation 17 1564924 C G 32 100 BRCA TCGA-C8-A1HM LRRC48 SNP Missense_Mutation 17 17910739 G C 41 53 BRCA TCGA-C8-A1HM SMG6 SNP Missense_Mutation 17 2203954 G T 48 65 BRCA TCGA-C8-A1HM SLC13A2 SNP Missense_Mutation 17 26824217 C G 30 54 BRCA TCGA-C8-A1HM CISD3 SNP Missense_Mutation 17 36887606 G C 40 60 BRCA TCGA-C8-A1HM PLEKHM1 SNP Missense_Mutation 17 43545712 C G 32 56 BRCA TCGA-C8-A1HM NLRP1 SNP Missense_Mutation 17 5418221 C G 32 56 BRCA TCGA-C8-A1HM TRIM37 SNP Missense_Mutation 17 57126636 G C 33 56 BRCA TCGA-C8-A1HM FXR2 SNP Missense_Mutation 17 7495896 C T 19 88 BRCA TCGA-C8-A1HM SEC14L1 SNP Missense_Mutation 17 75196587 C G 32 76 BRCA TCGA-C8-A1HM TP53 SNP Missense_Mutation 17 7578268 A G 3 88 BRCA TCGA-C8-A1HM ARL16 SNP Silent 17 79650736 C G 29 58 BRCA TCGA-C8-A1HM HGS SNP Missense_Mutation 17 79661866 G A 45 90 BRCA TCGA-C8-A1HM NEDD4L SNP Splice_Site 18 55833023 G C 33 85 BRCA TCGA-C8-A1HM KANK2 SNP Nonsense_Mutation 19 11287449 G C 45 68 BRCA TCGA-C8-A1HM ZNF625 SNP Missense_Mutation 19 12256762 G A 45 77 BRCA TCGA-C8-A1HM FAM129C SNP Missense_Mutation 19 17660294 C G 32 56 BRCA TCGA-C8-A1HM RAB3A SNP Splice_Site 19 18309660 C G 24 95 BRCA TCGA-C8-A1HM ELL SNP Missense_Mutation 19 18562372 G C 37 80 BRCA TCGA-C8-A1HM TMEM59L SNP Missense_Mutation 19 18729040 C T 32 58 BRCA TCGA-C8-A1HM ZNF681 SNP Silent 19 23937695 C T 29 44 BRCA TCGA-C8-A1HM CEP89 SNP Silent 19 33417111 G C 45 43 BRCA TCGA-C8-A1HM NMRK2 SNP Silent 19 3938653 G A 45 50 BRCA TCGA-C8-A1HM AKT2 SNP Missense_Mutation 19 40741906 C T 31 98 BRCA TCGA-C8-A1HM PLD3 SNP Missense_Mutation 19 40880424 C G 30 74 BRCA TCGA-C8-A1HM ITPKC SNP Missense_Mutation 19 41224139 G C 45 80 BRCA TCGA-C8-A1HM CA11 SNP Silent 19 49143054 G C 33 47 BRCA TCGA-C8-A1HM GYS1 SNP Missense_Mutation 19 49494681 C T 31 95 BRCA TCGA-C8-A1HM SIGLEC7 SNP Missense_Mutation 19 51649334 C T 30 63 BRCA TCGA-C8-A1HM SIGLEC5 SNP Silent 19 52132711 G A 45 54 BRCA TCGA-C8-A1HM LILRB3 SNP Silent 19 54723032 G C 41 47 BRCA TCGA-C8-A1HM CAPS SNP Silent 19 5914426 C T 23 9 BRCA TCGA-C8-A1HM MUC16 SNP Missense_Mutation 19 9059268 G A 47 50 BRCA TCGA-C8-A1HM AFF3 SNP Silent 2 100210557 C T 32 46 BRCA TCGA-C8-A1HM CCDC138 SNP Missense_Mutation 2 109404510 A G 7 55 BRCA TCGA-C8-A1HM ZC3H6 SNP Missense_Mutation 2 113089587 C T 29 92 BRCA TCGA-C8-A1HM GTDC1 SNP Missense_Mutation 2 144714895 C G 32 73 BRCA TCGA-C8-A1HM FIGN SNP Missense_Mutation 2 164467534 G A 41 100 BRCA TCGA-C8-A1HM LRP2 SNP Missense_Mutation 2 169995097 G A 45 84 BRCA TCGA-C8-A1HM UBR3 SNP Missense_Mutation 2 170917689 G C 48 62 BRCA TCGA-C8-A1HM DCAF17 SNP Missense_Mutation 2 172314580 G A 45 71 BRCA TCGA-C8-A1HM ITGA6 SNP Missense_Mutation 2 173349861 G A 33 98 BRCA TCGA-C8-A1HM PDK1 SNP Missense_Mutation 2 173423483 G C 33 100 BRCA TCGA-C8-A1HM TTN SNP Missense_Mutation 2 179441677 C G 29 100 BRCA TCGA-C8-A1HM MYT1L SNP Missense_Mutation 2 1795704 G C 45 100 BRCA TCGA-C8-A1HM TTN SNP Missense_Mutation 2 179605821 C G 32 57 BRCA TCGA-C8-A1HM UNC80 SNP Missense_Mutation 2 210680045 C T 29 100 BRCA TCGA-C8-A1HM APOB SNP Missense_Mutation 2 21232398 G C 45 66 BRCA TCGA-C8-A1HM OBSL1 SNP Missense_Mutation 2 220416900 C T 31 91 BRCA TCGA-C8-A1HM RBM44 SNP Missense_Mutation 2 238725683 G A 47 51 BRCA TCGA-C8-A1HM MAPRE3 SNP Nonsense_Mutation 2 27248570 G T 45 93 BRCA TCGA-C8-A1HM EFEMP1 SNP Missense_Mutation 2 56094242 C G 32 94 BRCA TCGA-C8-A1HM PCBP1 SNP Missense_Mutation 2 70314894 G C 45 80 BRCA TCGA-C8-A1HM ZNF638 DEL Frame_Shift_Del 2 71651842 AGAGGTAAAAAAT - 3 52 BRCA TCGA-C8-A1HM SIRPG SNP Missense_Mutation 20 1617003 C G 32 53 BRCA TCGA-C8-A1HM ABHD12 SNP Missense_Mutation 20 25281495 C G 29 67 BRCA TCGA-C8-A1HM GDF5 SNP Silent 20 34025184 C T 27 46 BRCA TCGA-C8-A1HM C20orf173 SNP Splice_site 20 34116530 C T 24 75 BRCA TCGA-C8-A1HM NDRG3 SNP Missense_Mutation 20 35284799 C T 31 93 BRCA TCGA-C8-A1HM ZNF334 SNP Missense_Mutation 20 45132914 G C 45 51 BRCA TCGA-C8-A1HM NFATC2 SNP Silent 20 50090599 C G 29 62 BRCA TCGA-C8-A1HM KRTAP26-1 SNP Silent 21 31692282 G C 45 41 BRCA TCGA-C8-A1HM DNAJC28 SNP Missense_Mutation 21 34861131 C G 32 51 BRCA TCGA-C8-A1HM DSCAM SNP Silent 21 42064818 G C 33 66 BRCA TCGA-C8-A1HM UMODL1 SNP Silent 21 43505408 G A 33 56 BRCA TCGA-C8-A1HM DRG1 SNP Missense_Mutation 22 31819322 G C 33 54 BRCA TCGA-C8-A1HM XRCC6 SNP Missense_Mutation 22 42032677 G C 33 88 BRCA TCGA-C8-A1HM GPRASP1 SNP Missense_Mutation 23 101910384 G C 33 62 BRCA TCGA-C8-A1HM COL4A6 SNP Silent 23 107436904 C T 25 53 BRCA TCGA-C8-A1HM AGTR2 SNP Silent 23 115304469 C T 27 56 BRCA TCGA-C8-A1HM GLUD2 SNP Silent 23 120182613 C T 32 51 BRCA TCGA-C8-A1HM GRIA3 SNP Nonsense_Mutation 23 122561910 G T 33 97 BRCA TCGA-C8-A1HM IRAK1 SNP Missense_Mutation 23 153278076 T C 51 77 BRCA TCGA-C8-A1HM ACE2 SNP Silent 23 15618933 G A 40 35 BRCA TCGA-C8-A1HM DCAF8L2 SNP Silent 23 27765804 G A 45 52 BRCA TCGA-C8-A1HM DMD SNP Missense_Mutation 23 32429984 T C 55 81 BRCA TCGA-C8-A1HM FAM47C SNP Missense_Mutation 23 37028630 C T 27 49 BRCA TCGA-C8-A1HM PAGE2 SNP Missense_Mutation 23 55117845 G A 41 45 BRCA TCGA-C8-A1HM RETNLB SNP Missense_Mutation 3 108475375 C G 32 38 BRCA TCGA-C8-A1HM CCDC80 SNP Missense_Mutation 3 112357123 C G 29 70 BRCA TCGA-C8-A1HM TOPBP1 SNP Silent 3 133372333 G T 48 75 BRCA TCGA-C8-A1HM PLSCR2 SNP Missense_Mutation 3 146173028 C T 30 55 BRCA TCGA-C8-A1HM PPM1L SNP Missense_Mutation 3 160786638 G A 41 94 BRCA TCGA-C8-A1HM SERPINI2 SNP Missense_Mutation 3 167184951 G C 33 72 BRCA TCGA-C8-A1HM PHC3 SNP Missense_Mutation 3 169847313 G C 33 84 BRCA TCGA-C8-A1HM YEATS2 SNP Missense_Mutation 3 183508603 G T 40 43 BRCA TCGA-C8-A1HM TBCCD1 SNP Silent 3 186272078 G A 33 50 BRCA TCGA-C8-A1HM IL5RA SNP Missense_Mutation 3 3137081 G A 37 43 BRCA TCGA-C8-A1HM ZNF35 SNP Missense_Mutation 3 44692688 C G 29 61 BRCA TCGA-C8-A1HM SMARCC1 SNP Missense_Mutation 3 47719698 C A 25 99 BRCA TCGA-C8-A1HM DNAH1 SNP Missense_Mutation 3 52430733 G C 45 97 BRCA TCGA-C8-A1HM C4orf17 SNP Missense_Mutation 4 100460508 G C 33 75 BRCA TCGA-C8-A1HM CENPE SNP Missense_Mutation 4 104061230 C G 32 68 BRCA TCGA-C8-A1HM SEC24B SNP Silent 4 110384524 C T 32 63 BRCA TCGA-C8-A1HM ADAD1 SNP Missense_Mutation 4 123332460 C G 32 86 BRCA TCGA-C8-A1HM PCDH10 SNP Silent 4 134073569 C T 32 52 BRCA TCGA-C8-A1HM FREM3 SNP Nonsense_Mutation 4 144617778 G A 45 58 BRCA TCGA-C8-A1HM HAND2 SNP Missense_Mutation 4 174449901 C G 32 54 BRCA TCGA-C8-A1HM ADAM29 SNP Missense_Mutation 4 175896863 C T 17 55 BRCA TCGA-C8-A1HM TEC SNP Missense_Mutation 4 48141011 A C 9 93 BRCA TCGA-C8-A1HM KIT SNP Missense_Mutation 4 55561716 C A 30 51 BRCA TCGA-C8-A1HM TECRL SNP Missense_Mutation 4 65145813 C A 28 76 BRCA TCGA-C8-A1HM SCARB2 SNP Missense_Mutation 4 77100771 G C 45 92 BRCA TCGA-C8-A1HM HERC6 SNP Missense_Mutation 4 89345780 A G 7 54 BRCA TCGA-C8-A1HM NREP SNP Missense_Mutation 5 111311071 C T 31 42 BRCA TCGA-C8-A1HM SEC24A SNP Silent 5 134011803 C T 29 66 BRCA TCGA-C8-A1HM PCDHA7 SNP Missense_Mutation 5 140215216 G C 33 59 BRCA TCGA-C8-A1HM SPINK5 SNP Missense_Mutation 5 147493927 G T 33 47 BRCA TCGA-C8-A1HM ATP10B SNP Missense_Mutation 5 160025900 C T 29 63 BRCA TCGA-C8-A1HM ODZ2 SNP Missense_Mutation 5 167689555 G C 41 99 BRCA TCGA-C8-A1HM CREBRF SNP Splice_Site 5 172550082 G A 33 89 BRCA TCGA-C8-A1HM FGFR4 SNP Silent 5 176523632 G A 33 73 BRCA TCGA-C8-A1HM C5orf51 SNP Missense_Mutation 5 41909903 C T 24 92 BRCA TCGA-C8-A1HM HMGCS1 SNP Silent 5 43294891 G C 33 62 BRCA TCGA-C8-A1HM EXOC3 SNP Missense_Mutation 5 453877 G C 41 96 BRCA TCGA-C8-A1HM SLC38A9 SNP Silent 5 54931483 C T 29 50 BRCA TCGA-C8-A1HM TMEM167A SNP Missense_Mutation 5 82360907 C G 29 74 BRCA TCGA-C8-A1HM MCTP1 SNP Silent 5 94353075 T G 54 52 BRCA TCGA-C8-A1HM SCML4 SNP Missense_Mutation 6 108041958 G C 41 65 BRCA TCGA-C8-A1HM FAM26F SNP Missense_Mutation 6 116784770 G C 33 58 BRCA TCGA-C8-A1HM SGK1 SNP Missense_Mutation 6 134498933 C T 32 48 BRCA TCGA-C8-A1HM IL20RA SNP Silent 6 137323193 G A 45 48 BRCA TCGA-C8-A1HM RNF182 SNP Missense_Mutation 6 13978083 C A 18 65 BRCA TCGA-C8-A1HM PEX3 SNP Missense_Mutation 6 143806383 C G 29 74 BRCA TCGA-C8-A1HM SYNE1 SNP Silent 6 152706962 C T 30 59 BRCA TCGA-C8-A1HM TIAM2 SNP Missense_Mutation 6 155450974 C T 31 65 BRCA TCGA-C8-A1HM PARK2 SNP Missense_Mutation 6 161969928 C G 32 64 BRCA TCGA-C8-A1HM GPLD1 SNP Missense_Mutation 6 24472849 C G 28 80 BRCA TCGA-C8-A1HM HIST1H4E SNP Silent 6 26205022 C T 29 50 BRCA TCGA-C8-A1HM SCAND3 SNP Missense_Mutation 6 28540923 G C 33 63 BRCA TCGA-C8-A1HM RIPK1 SNP Splice_Site 6 3111036 G A 33 90 BRCA TCGA-C8-A1HM ITPR3 SNP Missense_Mutation 6 33662776 G A 45 100 BRCA TCGA-C8-A1HM MRPL2 SNP Missense_Mutation 6 43025966 C T 29 48 BRCA TCGA-C8-A1HM ABCC10 SNP Missense_Mutation 6 43409655 G C 41 93 BRCA TCGA-C8-A1HM CLIC5 INS Frame_Shift_Ins 6 46047913 - GG 32 64 BRCA TCGA-C8-A1HM CLIC5 INS Frame_Shift_Ins 6 46047914 - CG 55 55 BRCA TCGA-C8-A1HM CD2AP SNP Missense_Mutation 6 47541929 C G 32 94 BRCA TCGA-C8-A1HM HCRTR2 SNP Silent 6 55142342 G A 46 54 BRCA TCGA-C8-A1HM EYS SNP Missense_Mutation 6 64940650 C A 29 62 BRCA TCGA-C8-A1HM RIMS1 SNP Missense_Mutation 6 73110378 C G 32 79 BRCA TCGA-C8-A1HM COL12A1 SNP Missense_Mutation 6 75893674 G A 45 83 BRCA TCGA-C8-A1HM UFL1 SNP Missense_Mutation 6 96997292 C G 32 57 BRCA TCGA-C8-A1HM LOC100287259 SNP Silent 7 100275366 C T 24 49 BRCA TCGA-C8-A1HM EPHB4 SNP Missense_Mutation 7 100405049 C G 29 93 BRCA TCGA-C8-A1HM LAMB1 SNP Missense_Mutation 7 107577624 G A 33 83 BRCA TCGA-C8-A1HM CAV1 SNP Missense_Mutation 7 116199333 G C 33 96 BRCA TCGA-C8-A1HM TMEM229A SNP Nonsense_Mutation 7 123672490 G A 46 54 BRCA TCGA-C8-A1HM CHCHD3 SNP Missense_Mutation 7 132470412 C G 29 62 BRCA TCGA-C8-A1HM EXOC4 SNP Missense_Mutation 7 133160142 C G 29 83 BRCA TCGA-C8-A1HM SLC4A2 SNP Missense_Mutation 7 150765003 G A 41 82 BRCA TCGA-C8-A1HM ABCF2 SNP Missense_Mutation 7 150922031 C G 32 65 BRCA TCGA-C8-A1HM INTS1 SNP Missense_Mutation 7 1539910 G C 46 98 BRCA TCGA-C8-A1HM STK31 SNP Missense_Mutation 7 23809284 C T 29 70 BRCA TCGA-C8-A1HM CRHR2 SNP Missense_Mutation 7 30706918 G C 37 59 BRCA TCGA-C8-A1HM MLXIPL SNP Missense_Mutation 7 73011917 G A 41 34 BRCA TCGA-C8-A1HM POR DEL In_Frame_Del 7 75609733 CCA - 22 96 BRCA TCGA-C8-A1HM PCLO SNP Nonsense_Mutation 7 82784780 G A 45 78 BRCA TCGA-C8-A1HM SOX7 SNP Silent 8 10587809 G A 41 75 BRCA TCGA-C8-A1HM ZFPM2 SNP Nonsense_Mutation 8 106814537 G T 45 100 BRCA TCGA-C8-A1HM ANGPT1 SNP Missense_Mutation 8 108359272 C G 32 67 BRCA TCGA-C8-A1HM PKHD1L1 SNP Silent 8 110523136 G C 45 53 BRCA TCGA-C8-A1HM ATAD2 SNP Missense_Mutation 8 124346529 C G 32 72 BRCA TCGA-C8-A1HM PHF20L1 SNP Missense_Mutation 8 133836315 G C 33 67 BRCA TCGA-C8-A1HM PTK2 SNP Missense_Mutation 8 141900716 G A 45 98 BRCA TCGA-C8-A1HM GPR20 SNP Missense_Mutation 8 142367126 C T 19 69 BRCA TCGA-C8-A1HM CYP11B2 SNP Missense_Mutation 8 143993476 G C 45 52 BRCA TCGA-C8-A1HM GPAA1 SNP Missense_Mutation 8 145140888 G A 37 93 BRCA TCGA-C8-A1HM PBK SNP Missense_Mutation 8 27668640 C T 29 69 BRCA TCGA-C8-A1HM VCPIP1 SNP Missense_Mutation 8 67578968 G C 38 68 BRCA TCGA-C8-A1HM KCNB2 SNP Silent 8 73480416 C T 19 41 BRCA TCGA-C8-A1HM TPD52 SNP Nonsense_Mutation 8 80965638 G C 45 100 BRCA TCGA-C8-A1HM PTDSS1 SNP Silent 8 97274286 G C 41 67 BRCA TCGA-C8-A1HM CPQ SNP Splice_site 8 98155248 G A 41 95 BRCA TCGA-C8-A1HM SLC44A1 SNP Missense_Mutation 9 108127819 C T 31 85 BRCA TCGA-C8-A1HM ZNF462 SNP Missense_Mutation 9 109688576 G A 45 74 BRCA TCGA-C8-A1HM TMEM245 SNP Missense_Mutation 9 111812870 G A 33 88 BRCA TCGA-C8-A1HM LHX2 SNP Missense_Mutation 9 126794835 C G 31 96 BRCA TCGA-C8-A1HM GARNL3 SNP Missense_Mutation 9 130097556 G C 45 92 BRCA TCGA-C8-A1HM AQP3 SNP Silent 9 33442427 G A 39 33 BRCA TCGA-C8-A1HM PRUNE2 SNP Missense_Mutation 9 79326181 C A 30 58 BRCA TCGA-C8-A1HN KIF14 DEL Frame_Shift_Del 1 200587127 CT - 28 49 BRCA TCGA-C8-A1HN GATA3 INS Frame_Shift_Ins 10 8115876 - G 26 100 BRCA TCGA-C8-A1HN GATA3 SNP Missense_Mutation 10 8115877 C A 22 84 BRCA TCGA-C8-A1HN ATHL1 SNP Silent 11 289954 C T 17 78 BRCA TCGA-C8-A1HN SCYL1 SNP Silent 11 65293726 C T 19 51 BRCA TCGA-C8-A1HN UCP3 SNP Missense_Mutation 11 73714978 C T 19 99 BRCA TCGA-C8-A1HN ATXN2 SNP Missense_Mutation 12 111951217 G C 35 73 BRCA TCGA-C8-A1HN TBX3 INS Frame_Shift_Ins 12 115120697 - GACC 47 48 BRCA TCGA-C8-A1HN PIWIL1 SNP Missense_Mutation 12 130827177 G A 38 78 BRCA TCGA-C8-A1HN FGF23 SNP Missense_Mutation 12 4479664 G A 43 58 BRCA TCGA-C8-A1HN KRT72 SNP Silent 12 52981585 G A 38 45 BRCA TCGA-C8-A1HN SILV SNP Silent 12 56349318 T A 51 52 BRCA TCGA-C8-A1HN VWF SNP Nonsense_Mutation 12 6230460 G A 39 65 BRCA TCGA-C8-A1HN LOC643677 SNP Silent 13 103391215 T C 63 56 BRCA TCGA-C8-A1HN ZFP36L1 SNP Nonsense_Mutation 14 69256807 T A 63 87 BRCA TCGA-C8-A1HN FMN1 SNP Missense_Mutation 15 33359773 C T 32 55 BRCA TCGA-C8-A1HN WDR72 DEL Frame_Shift_Del 15 53889357 CA - 29 58 BRCA TCGA-C8-A1HN EARS2 SNP Missense_Mutation 16 23546599 G A 39 71 BRCA TCGA-C8-A1HN ZNF385C SNP Missense_Mutation 17 40179106 G A 39 63 BRCA TCGA-C8-A1HN LOC100287890 SNP Splice_Site 17 40267634 G C 44 51 BRCA TCGA-C8-A1HN EPG5 SNP Silent 18 43503333 T C 56 46 BRCA TCGA-C8-A1HN ZNF700 SNP Missense_Mutation 19 12059318 G T 41 44 BRCA TCGA-C8-A1HN ARMC6 SNP Missense_Mutation 19 19162851 C G 21 49 BRCA TCGA-C8-A1HN CIC SNP Missense_Mutation 19 42799050 C T 23 60 BRCA TCGA-C8-A1HN KCNJ3 SNP Nonsense_Mutation 2 155711277 G T 45 100 BRCA TCGA-C8-A1HN LY75-CD302 SNP Silent 2 160690697 T C 55 51 BRCA TCGA-C8-A1HN KIDINS220 SNP Missense_Mutation 2 8926362 C A 31 100 BRCA TCGA-C8-A1HN CEP250 SNP Silent 20 34091462 G A 47 56 BRCA TCGA-C8-A1HN PLCG1 SNP Silent 20 39792360 C A 29 55 BRCA TCGA-C8-A1HN MATN4 SNP Splice_Site 20 43926557 C T 18 100 BRCA TCGA-C8-A1HN TSC22D3 SNP Silent 23 106957953 A G 8 52 BRCA TCGA-C8-A1HN COL4A6 SNP Missense_Mutation 23 107412746 T C 54 81 BRCA TCGA-C8-A1HN MXRA5 SNP Missense_Mutation 23 3238284 A T 2 47 BRCA TCGA-C8-A1HN SMC1A SNP Silent 23 53432455 G A 46 52 BRCA TCGA-C8-A1HN RIBC1 SNP Missense_Mutation 23 53453289 G A 37 49 BRCA TCGA-C8-A1HN SHROOM2 SNP Silent 23 9914800 C T 31 47 BRCA TCGA-C8-A1HN TNIK SNP Missense_Mutation 3 170846562 T G 55 88 BRCA TCGA-C8-A1HN XCR1 SNP Missense_Mutation 3 46062898 G A 40 40 BRCA TCGA-C8-A1HN SEMA3F SNP Nonsense_Mutation 3 50225261 C T 19 63 BRCA TCGA-C8-A1HN PSMD6 SNP Missense_Mutation 3 64004302 G A 39 100 BRCA TCGA-C8-A1HN PET112 SNP Missense_Mutation 4 152640617 G T 41 100 BRCA TCGA-C8-A1HN MND1 SNP Missense_Mutation 4 154335914 G T 38 62 BRCA TCGA-C8-A1HN ABLIM3 SNP Splice_site 5 148590290 G T 41 100 BRCA TCGA-C8-A1HN ZSWIM6 SNP Silent 5 60839535 G A 40 42 BRCA TCGA-C8-A1HN SERINC5 SNP Missense_Mutation 5 79473765 C G 17 55 BRCA TCGA-C8-A1HN TMEM200A SNP Missense_Mutation 6 130762622 G A 43 66 BRCA TCGA-C8-A1HN LRRN3 SNP Missense_Mutation 7 110763274 A G 6 94 BRCA TCGA-C8-A1HN CALD1 SNP Silent 7 134613541 G A 35 62 BRCA TCGA-C8-A1HN PREX2 SNP Missense_Mutation 8 69000006 G A 39 97 BRCA TCGA-C8-A1HN TSC1 SNP Missense_Mutation 9 135772688 C T 24 60 BRCA TCGA-C8-A1HN ZNF658 SNP Silent 9 40773232 T G 55 22 BRCA TCGA-C8-A1HO RSBN1 SNP Silent 1 114340405 T C 50 50 BRCA TCGA-C8-A1HO TPR SNP Missense_Mutation 1 186312558 G C 34 74 BRCA TCGA-C8-A1HO GATA3 INS Frame_Shift_Ins 10 8111494 - CTGGAGG 54 91 BRCA TCGA-C8-A1HO ABCC8 SNP Silent 11 17496468 C A 21 63 BRCA TCGA-C8-A1HO OR4C46 SNP Missense_Mutation 11 51515904 A G 2 45 BRCA TCGA-C8-A1HO UCP2 SNP Silent 11 73687705 C T 29 59 BRCA TCGA-C8-A1HO BBS10 SNP Missense_Mutation 12 76741035 C T 32 73 BRCA TCGA-C8-A1HO OR4K13 SNP Missense_Mutation 14 20502037 A T 14 69 BRCA TCGA-C8-A1HO GOLGA8J SNP Silent 15 32686900 C T 23 38 BRCA TCGA-C8-A1HO CDH1 SNP Missense_Mutation 16 68856122 G A 37 57 BRCA TCGA-C8-A1HO MAP2K4 SNP Nonsense_Mutation 17 12011212 A T 5 90 BRCA TCGA-C8-A1HO NARF SNP Missense_Mutation 17 80422247 G A 35 65 BRCA TCGA-C8-A1HO DSC1 SNP Missense_Mutation 18 28742499 A G 11 71 BRCA TCGA-C8-A1HO PEPD SNP Silent 19 33991853 G A 40 54 BRCA TCGA-C8-A1HO MAP4K1 SNP Silent 19 39096100 C T 28 52 BRCA TCGA-C8-A1HO ANKRD44 SNP Missense_Mutation 2 197986120 G A 42 100 BRCA TCGA-C8-A1HO C2orf71 SNP Silent 2 29293999 G T 47 40 BRCA TCGA-C8-A1HO EFEMP1 SNP Nonsense_Mutation 2 56097974 G A 39 75 BRCA TCGA-C8-A1HO SSTR4 SNP Silent 20 23016243 C T 19 47 BRCA TCGA-C8-A1HO IRS4 SNP Missense_Mutation 23 107978002 C T 31 63 BRCA TCGA-C8-A1HO MUC4 SNP Silent 3 195515766 A G 6 47 BRCA TCGA-C8-A1HO PCDHGB4 SNP Missense_Mutation 5 140769108 C T 23 75 BRCA TCGA-C8-A1HO PAPD4 SNP Missense_Mutation 5 78919122 G A 40 75 BRCA TCGA-C8-A1HO MAP3K5 SNP Silent 6 136878950 C G 30 51 BRCA TCGA-C8-A1HO FAM115C SNP Silent 7 143421584 G A 47 62 BRCA TCGA-C8-A1HO UTP23 SNP Missense_Mutation 8 117779018 T A 55 89 BRCA TCGA-C8-A1HO KCNU1 SNP Missense_Mutation 8 36644922 G T 33 60 BRCA TCGA-C8-A26V CSF1 SNP Missense_Mutation 1 110466502 C G 32 58 BRCA TCGA-C8-A26V PTCHD2 SNP Missense_Mutation 1 11579485 G A 47 63 BRCA TCGA-C8-A26V MRPL9 SNP Missense_Mutation 1 151735549 C T 31 74 BRCA TCGA-C8-A26V HRNR SNP Silent 1 152190916 G A 40 34 BRCA TCGA-C8-A26V FASLG SNP Missense_Mutation 1 172634780 C A 30 55 BRCA TCGA-C8-A26V PAPPA2 SNP Missense_Mutation 1 176564541 G C 45 66 BRCA TCGA-C8-A26V PAPPA2 SNP Missense_Mutation 1 176659458 G A 38 86 BRCA TCGA-C8-A26V NUAK2 SNP Missense_Mutation 1 205280937 A G 12 91 BRCA TCGA-C8-A26V GALNT2 SNP Silent 1 230381835 C A 29 55 BRCA TCGA-C8-A26V PHC2 SNP Missense_Mutation 1 33795806 C A 19 95 BRCA TCGA-C8-A26V ASB17 SNP Missense_Mutation 1 76397787 C T 29 79 BRCA TCGA-C8-A26V GBF1 SNP Missense_Mutation 10 104139146 G C 45 99 BRCA TCGA-C8-A26V ACTR1A SNP Missense_Mutation 10 104250366 G C 41 97 BRCA TCGA-C8-A26V GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-C8-A26V OR52K2 SNP Missense_Mutation 11 4471266 C G 29 57 BRCA TCGA-C8-A26V KIAA1731 SNP Missense_Mutation 11 93460372 G A 45 59 BRCA TCGA-C8-A26V PTHLH SNP Missense_Mutation 12 28116284 G A 45 50 BRCA TCGA-C8-A26V KRT84 SNP Missense_Mutation 12 52779047 C G 30 97 BRCA TCGA-C8-A26V SP7 SNP Silent 12 53722734 T C 54 51 BRCA TCGA-C8-A26V CKAP2 SNP Missense_Mutation 13 53042449 C G 32 50 BRCA TCGA-C8-A26V AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-C8-A26V RALGAPA1 SNP Silent 14 36096648 T G 56 61 BRCA TCGA-C8-A26V TM2D3 SNP Missense_Mutation 15 102190296 C G 32 93 BRCA TCGA-C8-A26V MPI SNP Missense_Mutation 15 75185065 G C 33 99 BRCA TCGA-C8-A26V CREBBP SNP Missense_Mutation 16 3777933 G A 37 99 BRCA TCGA-C8-A26V FHOD1 SNP Missense_Mutation 16 67265711 G A 47 52 BRCA TCGA-C8-A26V C16orf86 SNP Missense_Mutation 16 67701972 C T 32 59 BRCA TCGA-C8-A26V FLCN SNP Nonsense_Mutation 17 17122397 G C 45 62 BRCA TCGA-C8-A26V TP53 SNP Missense_Mutation 17 7577586 A C 12 86 BRCA TCGA-C8-A26V EPG5 SNP Missense_Mutation 18 43502498 C G 30 100 BRCA TCGA-C8-A26V CYP4F22 SNP Missense_Mutation 19 15636257 G A 38 75 BRCA TCGA-C8-A26V GRIK5 SNP Missense_Mutation 19 42558054 C A 18 98 BRCA TCGA-C8-A26V ZNF575 SNP Missense_Mutation 19 44038639 C G 21 52 BRCA TCGA-C8-A26V ALDH16A1 SNP Silent 19 49964940 G C 39 46 BRCA TCGA-C8-A26V IL1RN SNP Missense_Mutation 2 113888714 G A 45 50 BRCA TCGA-C8-A26V SF3B1 SNP Missense_Mutation 2 198266834 T C 62 93 BRCA TCGA-C8-A26V PRR21 SNP Missense_Mutation 2 240982199 A C 10 10 BRCA TCGA-C8-A26V PROM2 SNP Silent 2 95945629 A G 16 45 BRCA TCGA-C8-A26V TGM3 SNP Silent 20 2297758 C T 27 21 BRCA TCGA-C8-A26V PTPRA SNP Missense_Mutation 20 2985705 C G 32 99 BRCA TCGA-C8-A26V EDN3 SNP Silent 20 57876517 G A 35 62 BRCA TCGA-C8-A26V LAMA5 SNP Missense_Mutation 20 60904057 G C 33 63 BRCA TCGA-C8-A26V ZGPAT SNP Missense_Mutation 20 62340158 G A 33 75 BRCA TCGA-C8-A26V KRTAP13-3 SNP Missense_Mutation 21 31797741 G C 45 44 BRCA TCGA-C8-A26V TTC28 SNP Silent 22 28395192 G C 45 50 BRCA TCGA-C8-A26V ACO2 SNP Silent 22 41923399 C T 29 57 BRCA TCGA-C8-A26V GUCY2F SNP Missense_Mutation 23 108635297 A T 2 70 BRCA TCGA-C8-A26V CHRDL1 SNP Missense_Mutation 23 109963075 G A 39 57 BRCA TCGA-C8-A26V TRPC5 SNP Missense_Mutation 23 111078166 A G 11 90 BRCA TCGA-C8-A26V RBMX SNP Silent 23 135961212 T C 55 50 BRCA TCGA-C8-A26V MAGEC1 SNP Missense_Mutation 23 140994861 C G 20 49 BRCA TCGA-C8-A26V MTMR1 SNP Missense_Mutation 23 149905753 G C 33 97 BRCA TCGA-C8-A26V WDR13 SNP Silent 23 48463345 C T 29 73 BRCA TCGA-C8-A26V TRIM42 SNP Missense_Mutation 3 140409844 C G 32 59 BRCA TCGA-C8-A26V ZFYVE20 SNP Nonsense_Mutation 3 15115866 G C 45 54 BRCA TCGA-C8-A26V LIPH SNP Silent 3 185245369 G C 37 33 BRCA TCGA-C8-A26V POU1F1 SNP Missense_Mutation 3 87309075 G C 33 79 BRCA TCGA-C8-A26V DRD5 SNP Missense_Mutation 4 9784305 G A 45 82 BRCA TCGA-C8-A26V SEPT8 SNP Silent 5 132101177 C G 21 50 BRCA TCGA-C8-A26V SEC24A SNP Silent 5 134032905 C T 29 59 BRCA TCGA-C8-A26V ADAM19 SNP Silent 5 156957874 G A 40 40 BRCA TCGA-C8-A26V GABRA1 SNP Silent 5 161302575 G A 45 61 BRCA TCGA-C8-A26V FAM193B SNP Missense_Mutation 5 176951919 A C 6 56 BRCA TCGA-C8-A26V GRIK2 SNP Silent 6 102069879 C T 29 66 BRCA TCGA-C8-A26V AKD1 SNP Missense_Mutation 6 109818699 C T 29 70 BRCA TCGA-C8-A26V LAMA4 SNP Missense_Mutation 6 112499344 C G 29 51 BRCA TCGA-C8-A26V LATS1 SNP Missense_Mutation 6 150023155 T A 52 64 BRCA TCGA-C8-A26V RAET1E SNP Missense_Mutation 6 150211130 C G 32 70 BRCA TCGA-C8-A26V TUBB SNP Silent 6 30691484 G C 45 46 BRCA TCGA-C8-A26V KIF6 SNP Missense_Mutation 6 39607395 C A 20 51 BRCA TCGA-C8-A26V IMMP2L SNP Missense_Mutation 7 111127384 G A 35 85 BRCA TCGA-C8-A26V LUC7L2 SNP Missense_Mutation 7 139102409 G A 38 90 BRCA TCGA-C8-A26V NFE2L3 SNP Missense_Mutation 7 26224267 G A 45 71 BRCA TCGA-C8-A26V ICA1 SNP Silent 7 8153625 A G 7 50 BRCA TCGA-C8-A26V YWHAZ SNP Missense_Mutation 8 101961020 C G 30 78 BRCA TCGA-C8-A26V KCNV1 SNP Missense_Mutation 8 110984663 C A 32 75 BRCA TCGA-C8-A26V CYP11B2 SNP Missense_Mutation 8 143994845 G A 40 73 BRCA TCGA-C8-A26V RAB11FIP1 SNP Missense_Mutation 8 37734696 G A 37 62 BRCA TCGA-C8-A26V FAM75D1 SNP Silent 9 84608184 G A 39 45 BRCA TCGA-C8-A26V CDC14B SNP Missense_Mutation 9 99271985 C G 32 85 BRCA TCGA-C8-A26W HRNR SNP Silent 1 152186443 A G 8 42 BRCA TCGA-C8-A26W DCST2 SNP Missense_Mutation 1 154995617 G A 45 61 BRCA TCGA-C8-A26W RGS16 SNP Missense_Mutation 1 182569504 G A 39 54 BRCA TCGA-C8-A26W GBP7 SNP Missense_Mutation 1 89630428 C T 22 82 BRCA TCGA-C8-A26W LBX1 SNP Missense_Mutation 10 102987344 G T 38 74 BRCA TCGA-C8-A26W PCDH15 SNP Silent 10 55587197 A C 11 41 BRCA TCGA-C8-A26W MICAL2 SNP Missense_Mutation 11 12245016 C T 31 97 BRCA TCGA-C8-A26W SLC6A5 SNP Missense_Mutation 11 20676303 C G 32 68 BRCA TCGA-C8-A26W APBB1 SNP Missense_Mutation 11 6417361 G A 42 89 BRCA TCGA-C8-A26W FAM76B SNP Missense_Mutation 11 95520814 C T 25 95 BRCA TCGA-C8-A26W CPNE8 SNP Nonsense_Mutation 12 39161456 G A 37 72 BRCA TCGA-C8-A26W TMCC3 SNP Missense_Mutation 12 94975411 C G 32 100 BRCA TCGA-C8-A26W GJA3 SNP Silent 13 20717290 G A 38 37 BRCA TCGA-C8-A26W OR4Q3 SNP Missense_Mutation 14 20216391 G A 41 66 BRCA TCGA-C8-A26W HERC2 SNP Missense_Mutation 15 28387403 G C 43 100 BRCA TCGA-C8-A26W GTF3C1 SNP Missense_Mutation 16 27556779 T A 50 85 BRCA TCGA-C8-A26W SETD1A SNP Silent 16 30975564 C T 29 58 BRCA TCGA-C8-A26W CDH8 SNP Splice_site 16 61935083 C A 22 77 BRCA TCGA-C8-A26W TP53 SNP Missense_Mutation 17 7577120 C A 19 94 BRCA TCGA-C8-A26W SS18 SNP Missense_Mutation 18 23619391 G C 45 97 BRCA TCGA-C8-A26W UPK1A SNP Silent 19 36164378 G C 45 62 BRCA TCGA-C8-A26W CYP2F1 SNP Splice_site 19 41627364 C T 27 45 BRCA TCGA-C8-A26W SIGLEC8 SNP Missense_Mutation 19 51961352 T C 63 33 BRCA TCGA-C8-A26W LILRB1 SNP Missense_Mutation 19 55148052 C A 30 28 BRCA TCGA-C8-A26W CCDC74B SNP Missense_Mutation 2 130897469 C T 32 59 BRCA TCGA-C8-A26W XIRP2 SNP Missense_Mutation 2 168107692 A G 9 64 BRCA TCGA-C8-A26W DLX2 SNP Missense_Mutation 2 172967226 G A 37 92 BRCA TCGA-C8-A26W TTN SNP Missense_Mutation 2 179426582 C T 29 100 BRCA TCGA-C8-A26W FAM171B SNP Silent 2 187626830 C G 21 54 BRCA TCGA-C8-A26W APOB SNP Silent 2 21226147 A G 8 62 BRCA TCGA-C8-A26W DOK1 SNP Missense_Mutation 2 74783592 G C 33 59 BRCA TCGA-C8-A26W MYLK2 SNP Missense_Mutation 20 30409483 G A 37 62 BRCA TCGA-C8-A26W CDK5RAP1 SNP Silent 20 31967344 G A 33 63 BRCA TCGA-C8-A26W NFATC2 SNP Missense_Mutation 20 50051765 C G 32 52 BRCA TCGA-C8-A26W SGSM3 SNP Missense_Mutation 22 40802535 G C 43 67 BRCA TCGA-C8-A26W KIAA1210 SNP Silent 23 118221704 C T 32 36 BRCA TCGA-C8-A26W RBP1 SNP Missense_Mutation 3 139258365 C T 31 90 BRCA TCGA-C8-A26W PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-C8-A26W ABCC5 SNP Missense_Mutation 3 183677527 C T 32 86 BRCA TCGA-C8-A26W CSPG5 SNP Missense_Mutation 3 47610685 T A 50 87 BRCA TCGA-C8-A26W MTTP SNP Missense_Mutation 4 100532382 A G 6 64 BRCA TCGA-C8-A26W SLIT2 SNP Missense_Mutation 4 20490503 C T 31 64 BRCA TCGA-C8-A26W NUS1 SNP Silent 6 117996896 G T 38 92 BRCA TCGA-C8-A26W LTV1 SNP Missense_Mutation 6 144183272 G A 41 77 BRCA TCGA-C8-A26W EYS SNP Missense_Mutation 6 64431555 A G 2 54 BRCA TCGA-C8-A26W LY86 SNP Missense_Mutation 6 6589046 T G 55 72 BRCA TCGA-C8-A26W GNB2 SNP Missense_Mutation 7 100276323 C T 24 78 BRCA TCGA-C8-A26W HGF SNP Missense_Mutation 7 81334803 C T 30 88 BRCA TCGA-C8-A26W WDYHV1 SNP Missense_Mutation 8 124442245 C G 27 80 BRCA TCGA-C8-A26W DBC1 SNP Silent 9 121971044 G A 45 55 BRCA TCGA-C8-A26W FOCAD SNP Silent 9 20990142 G A 45 73 BRCA TCGA-C8-A26W DNAJB5 SNP Missense_Mutation 9 34996381 T C 56 90 BRCA TCGA-C8-A26W CCDC107 SNP Silent 9 35660615 G A 45 58 BRCA TCGA-C8-A26X KCND3 SNP Missense_Mutation 1 112321061 G C 45 70 BRCA TCGA-C8-A26X ATF6 INS Frame_Shift_Ins 1 161821536 - A 17 68 BRCA TCGA-C8-A26X DENND1B DEL Frame_Shift_Del 1 197641237 TGTC - 51 89 BRCA TCGA-C8-A26X SRSF11 SNP Splice_Site 1 70716188 T C 57 86 BRCA TCGA-C8-A26X PIK3CD SNP Missense_Mutation 1 9784395 G A 38 99 BRCA TCGA-C8-A26X GBF1 SNP Missense_Mutation 10 104111081 G A 48 100 BRCA TCGA-C8-A26X PLCE1 SNP Missense_Mutation 10 95994013 G A 38 57 BRCA TCGA-C8-A26X CCDC89 SNP Missense_Mutation 11 85396110 C A 28 79 BRCA TCGA-C8-A26X CLEC9A SNP Silent 12 10213790 G A 46 61 BRCA TCGA-C8-A26X C12orf42 SNP Missense_Mutation 12 103700001 G T 39 44 BRCA TCGA-C8-A26X NCOR2 SNP Missense_Mutation 12 124904522 C T 23 97 BRCA TCGA-C8-A26X MLL2 SNP Missense_Mutation 12 49427194 G C 48 52 BRCA TCGA-C8-A26X KRT84 SNP Missense_Mutation 12 52779276 G A 39 61 BRCA TCGA-C8-A26X ACIN1 SNP Missense_Mutation 14 23548943 C A 32 76 BRCA TCGA-C8-A26X TUBGCP5 INS Frame_Shift_Ins 15 22869955 - G 63 75 BRCA TCGA-C8-A26X DYX1C1 SNP Splice_Site 15 55742419 C A 18 84 BRCA TCGA-C8-A26X SRCAP SNP Silent 16 30749899 A T 11 48 BRCA TCGA-C8-A26X UNC13D SNP Missense_Mutation 17 73832707 G A 33 64 BRCA TCGA-C8-A26X TP53 SNP Missense_Mutation 17 7578413 C T 17 97 BRCA TCGA-C8-A26X FN3K SNP Missense_Mutation 17 80708303 C T 23 71 BRCA TCGA-C8-A26X ZNF85 SNP Missense_Mutation 19 21132063 A G 8 77 BRCA TCGA-C8-A26X HKR1 SNP Missense_Mutation 19 37854220 G A 39 54 BRCA TCGA-C8-A26X FAP SNP Silent 2 163072473 G A 37 36 BRCA TCGA-C8-A26X TTN SNP Missense_Mutation 2 179440959 C G 20 50 BRCA TCGA-C8-A26X TTN SNP Silent 2 179587200 G T 45 50 BRCA TCGA-C8-A26X REL SNP Silent 2 61149040 A G 5 53 BRCA TCGA-C8-A26X SYCP2 SNP Missense_Mutation 20 58448924 C T 31 28 BRCA TCGA-C8-A26X MYO18B SNP Missense_Mutation 22 26164533 G A 39 39 BRCA TCGA-C8-A26X GGA1 SNP Missense_Mutation 22 38013003 C T 19 79 BRCA TCGA-C8-A26X GCAT SNP Missense_Mutation 22 38206091 T C 50 88 BRCA TCGA-C8-A26X ARHGAP4 SNP Silent 23 153174974 C A 21 37 BRCA TCGA-C8-A26X PRICKLE3 SNP Missense_Mutation 23 49034432 G A 38 79 BRCA TCGA-C8-A26X SLC16A2 SNP Nonsense_Mutation 23 73751293 C T 25 57 BRCA TCGA-C8-A26X PVRL3 SNP Missense_Mutation 3 110841072 T G 50 70 BRCA TCGA-C8-A26X POLQ SNP Missense_Mutation 3 121206799 G A 45 47 BRCA TCGA-C8-A26X PIK3CA DEL In_Frame_Del 3 178916922 ACCAGTAGG - 2 52 BRCA TCGA-C8-A26X EIF4A2 SNP Missense_Mutation 3 186507018 C T 17 95 BRCA TCGA-C8-A26X MUC4 SNP Missense_Mutation 3 195506579 T C 59 52 BRCA TCGA-C8-A26X SCN5A SNP Missense_Mutation 3 38592337 C T 21 98 BRCA TCGA-C8-A26X CCRN4L SNP Missense_Mutation 4 139964462 C T 24 79 BRCA TCGA-C8-A26X TLR3 SNP Missense_Mutation 4 187004711 C T 30 70 BRCA TCGA-C8-A26X CLOCK DEL Frame_Shift_Del 4 56316278 GT - 40 98 BRCA TCGA-C8-A26X TAF9 SNP Missense_Mutation 5 68661327 C A 29 98 BRCA TCGA-C8-A26X MSH3 SNP Missense_Mutation 5 80088607 A G 12 86 BRCA TCGA-C8-A26X ENPP5 SNP Missense_Mutation 6 46135740 T A 52 58 BRCA TCGA-C8-A26X EEF1A1 INS Frame_Shift_Ins 6 74227785 - A 17 99 BRCA TCGA-C8-A26X TSGA13 SNP Missense_Mutation 7 130368439 C G 28 32 BRCA TCGA-C8-A26X PRKDC SNP Missense_Mutation 8 48801132 C A 25 78 BRCA TCGA-C8-A26X CPA6 SNP Silent 8 68346411 C T 23 37 BRCA TCGA-C8-A26Z IQGAP3 SNP Silent 1 156530742 A C 6 50 BRCA TCGA-C8-A26Z OR6K3 SNP Missense_Mutation 1 158687491 G A 39 50 BRCA TCGA-C8-A26Z DEGS1 SNP Missense_Mutation 1 224377282 A G 3 92 BRCA TCGA-C8-A26Z EIF2C1 SNP Missense_Mutation 1 36358211 G A 38 100 BRCA TCGA-C8-A26Z SH3GLB1 SNP Missense_Mutation 1 87207920 A G 4 69 BRCA TCGA-C8-A26Z KCNK18 SNP Missense_Mutation 10 118969342 G T 33 55 BRCA TCGA-C8-A26Z ZNF248 SNP Missense_Mutation 10 38121863 A C 6 60 BRCA TCGA-C8-A26Z MAPK8IP1 SNP Missense_Mutation 11 45926335 G A 40 61 BRCA TCGA-C8-A26Z ABCC9 SNP Missense_Mutation 12 22063221 C G 24 87 BRCA TCGA-C8-A26Z ARNTL2 SNP Missense_Mutation 12 27533206 G A 39 90 BRCA TCGA-C8-A26Z FOXM1 SNP Missense_Mutation 12 2983155 G A 40 46 BRCA TCGA-C8-A26Z ERBB3 SNP Missense_Mutation 12 56487649 G T 48 65 BRCA TCGA-C8-A26Z PTPRB SNP Missense_Mutation 12 71016202 T C 58 66 BRCA TCGA-C8-A26Z DNAJC3 SNP Missense_Mutation 13 96412387 G A 46 64 BRCA TCGA-C8-A26Z CDH24 SNP Missense_Mutation 14 23521744 G T 46 56 BRCA TCGA-C8-A26Z MAP1A SNP Missense_Mutation 15 43816672 G T 47 74 BRCA TCGA-C8-A26Z VWA3A SNP Missense_Mutation 16 22159506 G A 40 60 BRCA TCGA-C8-A26Z VPS35 DEL Frame_Shift_Del 16 46694483 CT - 28 52 BRCA TCGA-C8-A26Z SDK2 SNP Missense_Mutation 17 71346499 G T 33 81 BRCA TCGA-C8-A26Z FXYD3 SNP Missense_Mutation 19 35610312 T G 62 67 BRCA TCGA-C8-A26Z FUZ SNP Missense_Mutation 19 50315962 C T 30 86 BRCA TCGA-C8-A26Z POTEI SNP Silent 2 131258114 A G 8 34 BRCA TCGA-C8-A26Z XIRP2 SNP Missense_Mutation 2 168108454 A T 3 51 BRCA TCGA-C8-A26Z ALMS1 SNP Missense_Mutation 2 73659408 A C 8 54 BRCA TCGA-C8-A26Z SLC24A3 DEL Frame_Shift_Del 20 19665914 AG - 7 40 BRCA TCGA-C8-A26Z KRTAP19-4 SNP Missense_Mutation 21 31869332 G A 39 48 BRCA TCGA-C8-A26Z ZIC3 SNP Missense_Mutation 23 136651211 G A 38 97 BRCA TCGA-C8-A26Z EBP SNP Silent 23 48385405 A T 12 48 BRCA TCGA-C8-A26Z TRANK1 SNP Missense_Mutation 3 36900329 G T 48 50 BRCA TCGA-C8-A26Z POU4F2 SNP Silent 4 147561516 C T 23 56 BRCA TCGA-C8-A26Z SH3PXD2B SNP Silent 5 171766138 G A 38 41 BRCA TCGA-C8-A26Z RUNX2 SNP Nonsense_Mutation 6 45399750 G T 47 100 BRCA TCGA-C8-A26Z SENP6 SNP Nonsense_Mutation 6 76412369 G A 47 91 BRCA TCGA-C8-A26Z ZAN SNP Silent 7 100349543 C T 21 53 BRCA TCGA-C8-A26Z KIAA1549 SNP Missense_Mutation 7 138593769 G A 48 72 BRCA TCGA-C8-A26Z STAG3 SNP Missense_Mutation 7 99802723 C T 30 81 BRCA TCGA-C8-A26Z EFR3A SNP Missense_Mutation 8 132962331 G A 37 59 BRCA TCGA-C8-A26Z FAM135B SNP Missense_Mutation 8 139165210 G A 45 64 BRCA TCGA-C8-A26Z TEX15 SNP Missense_Mutation 8 30694937 G C 48 51 BRCA TCGA-C8-A26Z RP1 SNP Missense_Mutation 8 55537775 C T 31 58 BRCA TCGA-C8-A26Z KIAA1429 SNP Missense_Mutation 8 95502298 C T 19 99 BRCA TCGA-C8-A26Z KIAA2026 SNP Missense_Mutation 9 5968121 G A 38 78 BRCA TCGA-C8-A273 FAM78B SNP Missense_Mutation 1 166039779 C A 32 82 BRCA TCGA-C8-A273 DNA2 SNP Silent 10 70231706 G A 38 55 BRCA TCGA-C8-A273 GATA3 INS Frame_Shift_Ins 10 8111513 - G 51 47 BRCA TCGA-C8-A273 OR8H1 SNP Missense_Mutation 11 56058034 C T 31 50 BRCA TCGA-C8-A273 NPAS4 SNP Missense_Mutation 11 66191476 G A 34 61 BRCA TCGA-C8-A273 ANO1 SNP Silent 11 70007819 C T 19 57 BRCA TCGA-C8-A273 EP400 SNP Silent 12 132562209 G A 40 41 BRCA TCGA-C8-A273 TTC7B SNP Missense_Mutation 14 91077095 G T 41 85 BRCA TCGA-C8-A273 SNUPN SNP Nonsense_Mutation 15 75901960 G T 36 69 BRCA TCGA-C8-A273 CACNA1G SNP Silent 17 48703503 C G 22 62 BRCA TCGA-C8-A273 CACNA1G SNP Missense_Mutation 17 48703604 C T 21 58 BRCA TCGA-C8-A273 NACA2 SNP Silent 17 59668404 G A 47 36 BRCA TCGA-C8-A273 POLR2A SNP Missense_Mutation 17 7402650 A C 6 92 BRCA TCGA-C8-A273 SIRT7 SNP Splice_site 17 79875594 A C 6 57 BRCA TCGA-C8-A273 SCN3A SNP Missense_Mutation 2 165952146 G A 42 100 BRCA TCGA-C8-A273 SIRPB1 SNP Missense_Mutation 20 1551639 G A 37 48 BRCA TCGA-C8-A273 SLC24A3 SNP Silent 20 19662508 C T 19 49 BRCA TCGA-C8-A273 APOBEC3A SNP Splice_Site 22 39357391 G A 35 45 BRCA TCGA-C8-A273 FRG2 SNP Silent 4 190947916 C T 23 34 BRCA TCGA-C8-A273 PCDHB6 SNP Missense_Mutation 5 140530373 G A 40 49 BRCA TCGA-C8-A273 UBN2 SNP Missense_Mutation 7 138968233 C A 30 86 BRCA TCGA-C8-A274 KIF1B SNP Missense_Mutation 1 10363841 G C 33 60 BRCA TCGA-C8-A274 AMY2B SNP Silent 1 104116527 C T 30 61 BRCA TCGA-C8-A274 UBE2J2 SNP Missense_Mutation 1 1190722 G T 47 97 BRCA TCGA-C8-A274 VPS13D SNP Missense_Mutation 1 12389921 G A 45 82 BRCA TCGA-C8-A274 ACP6 SNP Missense_Mutation 1 147126421 G C 33 63 BRCA TCGA-C8-A274 CA14 SNP Missense_Mutation 1 150235547 G C 33 66 BRCA TCGA-C8-A274 C1orf56 SNP Silent 1 151021205 C T 29 45 BRCA TCGA-C8-A274 GON4L SNP Missense_Mutation 1 155735772 G C 41 52 BRCA TCGA-C8-A274 SEMA4A SNP Missense_Mutation 1 156142776 C G 32 47 BRCA TCGA-C8-A274 SEMA4A SNP Nonsense_Mutation 1 156146369 C T 21 65 BRCA TCGA-C8-A274 NES SNP Missense_Mutation 1 156642072 C T 29 63 BRCA TCGA-C8-A274 OR10R2 SNP Missense_Mutation 1 158449727 G T 33 63 BRCA TCGA-C8-A274 DCAF6 SNP Silent 1 168034923 G A 45 52 BRCA TCGA-C8-A274 SMG7 SNP Silent 1 183511502 G A 45 67 BRCA TCGA-C8-A274 ASPM SNP Splice_Site 1 197113231 C T 28 94 BRCA TCGA-C8-A274 CDK18 SNP Silent 1 205499425 G A 45 64 BRCA TCGA-C8-A274 PFKFB2 SNP Silent 1 207243670 C T 28 64 BRCA TCGA-C8-A274 CENPF SNP Missense_Mutation 1 214815627 G A 45 56 BRCA TCGA-C8-A274 ACTA1 SNP Missense_Mutation 1 229567374 C T 30 81 BRCA TCGA-C8-A274 ACTN2 SNP Silent 1 236914892 C T 29 62 BRCA TCGA-C8-A274 RYR2 SNP Silent 1 237895411 G T 45 50 BRCA TCGA-C8-A274 C1orf101 SNP Missense_Mutation 1 244803299 G C 45 54 BRCA TCGA-C8-A274 OR2AK2 SNP Silent 1 248128843 C T 30 49 BRCA TCGA-C8-A274 OR2L3 SNP Missense_Mutation 1 248224664 G A 45 48 BRCA TCGA-C8-A274 OR2T1 SNP Silent 1 248569793 C T 26 40 BRCA TCGA-C8-A274 CSMD2 SNP Missense_Mutation 1 34090136 C T 31 99 BRCA TCGA-C8-A274 STK40 SNP Missense_Mutation 1 36814341 C G 32 94 BRCA TCGA-C8-A274 CLCA4 SNP Missense_Mutation 1 87045807 A T 3 67 BRCA TCGA-C8-A274 COL17A1 SNP Missense_Mutation 10 105812868 C A 21 62 BRCA TCGA-C8-A274 NHLRC2 SNP Missense_Mutation 10 115614776 G C 41 80 BRCA TCGA-C8-A274 C10orf114 SNP Missense_Mutation 10 21784544 G T 37 52 BRCA TCGA-C8-A274 COMMD3 SNP Silent 10 22606826 G A 45 76 BRCA TCGA-C8-A274 PITRM1 SNP Missense_Mutation 10 3191919 C T 27 62 BRCA TCGA-C8-A274 DIP2C SNP Missense_Mutation 10 375423 C T 19 100 BRCA TCGA-C8-A274 WDFY4 SNP Silent 10 49931543 C T 32 52 BRCA TCGA-C8-A274 CALML5 SNP Missense_Mutation 10 5541299 C T 27 58 BRCA TCGA-C8-A274 FAM208B SNP Missense_Mutation 10 5799561 C G 29 45 BRCA TCGA-C8-A274 DNAJC9 SNP Missense_Mutation 10 75006522 C T 30 96 BRCA TCGA-C8-A274 TTC18 SNP Missense_Mutation 10 75035266 G C 33 62 BRCA TCGA-C8-A274 KIF20B SNP Silent 10 91503681 C G 29 50 BRCA TCGA-C8-A274 CNTN5 SNP Silent 11 100095465 G A 45 78 BRCA TCGA-C8-A274 COPB1 SNP Missense_Mutation 11 14486547 G A 41 100 BRCA TCGA-C8-A274 OR52K2 SNP Missense_Mutation 11 4470867 C G 32 57 BRCA TCGA-C8-A274 MADD SNP Missense_Mutation 11 47345270 G C 45 98 BRCA TCGA-C8-A274 PPFIA1 SNP Missense_Mutation 11 70202291 C T 29 74 BRCA TCGA-C8-A274 SCUBE2 SNP Missense_Mutation 11 9043489 T A 60 46 BRCA TCGA-C8-A274 TCTN2 SNP Silent 12 124189191 G A 39 15 BRCA TCGA-C8-A274 DENND5B SNP Silent 12 31632974 A G 3 50 BRCA TCGA-C8-A274 KRT74 SNP Missense_Mutation 12 52962061 T A 54 77 BRCA TCGA-C8-A274 TNFRSF1A SNP Missense_Mutation 12 6443376 G A 45 47 BRCA TCGA-C8-A274 ATN1 SNP Missense_Mutation 12 7043656 C T 21 78 BRCA TCGA-C8-A274 TBC1D15 SNP Missense_Mutation 12 72288506 T A 64 91 BRCA TCGA-C8-A274 NALCN SNP Silent 13 102029101 C T 32 51 BRCA TCGA-C8-A274 ARHGEF7 SNP Silent 13 111955406 G A 45 54 BRCA TCGA-C8-A274 TRIM13 SNP Nonsense_Mutation 13 50587116 G A 47 78 BRCA TCGA-C8-A274 TRAF3 SNP Nonsense_Mutation 14 103363658 C T 29 87 BRCA TCGA-C8-A274 TRAF3 INS Frame_Shift_Ins 14 103369680 - A 51 80 BRCA TCGA-C8-A274 CHD8 SNP Missense_Mutation 14 21868712 C T 31 83 BRCA TCGA-C8-A274 MYH7 SNP Silent 14 23885225 C T 32 57 BRCA TCGA-C8-A274 DCAF11 SNP Missense_Mutation 14 24586891 C T 32 67 BRCA TCGA-C8-A274 DCAF11 SNP Nonsense_Mutation 14 24587304 C T 29 96 BRCA TCGA-C8-A274 TM9SF1 SNP Silent 14 24659852 G A 33 64 BRCA TCGA-C8-A274 HECTD1 SNP Missense_Mutation 14 31604763 C T 32 100 BRCA TCGA-C8-A274 SLC35F4 SNP Missense_Mutation 14 58063474 C T 30 41 BRCA TCGA-C8-A274 DACT1 SNP Missense_Mutation 14 59112495 C T 29 59 BRCA TCGA-C8-A274 KCNH5 SNP Silent 14 63174898 C A 21 84 BRCA TCGA-C8-A274 RHOJ SNP Missense_Mutation 14 63757697 G C 33 62 BRCA TCGA-C8-A274 SYNE2 SNP Missense_Mutation 14 64496652 G A 45 53 BRCA TCGA-C8-A274 SYNE2 SNP Missense_Mutation 14 64595260 G C 45 55 BRCA TCGA-C8-A274 MTHFD1 SNP Missense_Mutation 14 64879239 C G 32 65 BRCA TCGA-C8-A274 GABRA5 SNP Silent 15 27160004 G A 38 43 BRCA TCGA-C8-A274 FAM96A SNP Missense_Mutation 15 64385865 C G 32 89 BRCA TCGA-C8-A274 IMP3 SNP Missense_Mutation 15 75932283 G A 37 66 BRCA TCGA-C8-A274 PLK1 SNP Silent 16 23690577 C G 31 40 BRCA TCGA-C8-A274 PRKCB SNP Silent 16 24104239 C G 29 51 BRCA TCGA-C8-A274 GTF3C1 SNP Silent 16 27499930 G C 45 62 BRCA TCGA-C8-A274 SRCAP SNP Missense_Mutation 16 30735726 C G 29 92 BRCA TCGA-C8-A274 CDH8 SNP Missense_Mutation 16 61935368 C T 32 100 BRCA TCGA-C8-A274 CDH1 INS Frame_Shift_Ins 16 68856067 - T 24 53 BRCA TCGA-C8-A274 SRCIN1 SNP Missense_Mutation 17 36719665 G C 46 82 BRCA TCGA-C8-A274 ERBB2 SNP Missense_Mutation 17 37880257 C G 32 68 BRCA TCGA-C8-A274 PTRF SNP Silent 17 40556903 G C 45 58 BRCA TCGA-C8-A274 EPX SNP Missense_Mutation 17 56272352 C T 27 57 BRCA TCGA-C8-A274 CLTC SNP Missense_Mutation 17 57697514 C T 31 77 BRCA TCGA-C8-A274 ABCA5 SNP Missense_Mutation 17 67286128 C T 29 92 BRCA TCGA-C8-A274 CD300LF SNP Missense_Mutation 17 72700695 C T 29 79 BRCA TCGA-C8-A274 EXOC7 SNP Splice_site 17 74079730 C T 29 54 BRCA TCGA-C8-A274 OXLD1 SNP Silent 17 79632282 G A 45 61 BRCA TCGA-C8-A274 WDR16 SNP Missense_Mutation 17 9503393 G A 45 84 BRCA TCGA-C8-A274 NPC1 SNP Silent 18 21119419 G A 37 48 BRCA TCGA-C8-A274 THOC1 SNP Silent 18 226824 G C 45 57 BRCA TCGA-C8-A274 SMAD2 SNP Missense_Mutation 18 45374910 G C 33 65 BRCA TCGA-C8-A274 MRPL4 SNP Silent 19 10363300 C T 31 48 BRCA TCGA-C8-A274 CACNA1A SNP Missense_Mutation 19 13370494 C G 32 52 BRCA TCGA-C8-A274 TCF3 SNP Missense_Mutation 19 1615425 G A 38 72 BRCA TCGA-C8-A274 TMEM59L SNP Missense_Mutation 19 18726791 G T 44 57 BRCA TCGA-C8-A274 RFXANK SNP Missense_Mutation 19 19304852 G C 33 72 BRCA TCGA-C8-A274 ZNF675 SNP Missense_Mutation 19 23844973 C T 30 56 BRCA TCGA-C8-A274 SCGB2B2 SNP Silent 19 35085448 G T 35 51 BRCA TCGA-C8-A274 ZNF540 DEL In_Frame_Del 19 38103573 GAAGCCCTACGAATGTAAGGAATGTGG - 45 50 BRCA TCGA-C8-A274 CLPTM1 SNP Missense_Mutation 19 45490529 G A 37 76 BRCA TCGA-C8-A274 PRR12 SNP Missense_Mutation 19 50118164 G A 39 91 BRCA TCGA-C8-A274 AKT1S1 SNP Splice_site 19 50373175 C T 29 63 BRCA TCGA-C8-A274 LILRA2 SNP Missense_Mutation 19 55086371 T A 58 43 BRCA TCGA-C8-A274 ZNF304 SNP Missense_Mutation 19 57869175 C A 17 40 BRCA TCGA-C8-A274 ZNF17 SNP Missense_Mutation 19 57931692 G C 45 51 BRCA TCGA-C8-A274 STEAP3 SNP Missense_Mutation 2 120020658 T C 59 66 BRCA TCGA-C8-A274 NEB SNP Missense_Mutation 2 152520097 C G 29 96 BRCA TCGA-C8-A274 IFIH1 SNP Missense_Mutation 2 163174697 C G 32 86 BRCA TCGA-C8-A274 TTN SNP Silent 2 179423171 C G 29 54 BRCA TCGA-C8-A274 CERKL SNP Missense_Mutation 2 182403832 C T 32 69 BRCA TCGA-C8-A274 PMS1 SNP Missense_Mutation 2 190742066 C G 32 49 BRCA TCGA-C8-A274 SLC39A10 SNP Missense_Mutation 2 196545103 G T 33 78 BRCA TCGA-C8-A274 ALS2CR11 SNP Missense_Mutation 2 202356492 C T 29 48 BRCA TCGA-C8-A274 ALS2CR11 SNP Missense_Mutation 2 202357912 C G 20 47 BRCA TCGA-C8-A274 MAP4K3 SNP Nonsense_Mutation 2 39553347 C A 30 100 BRCA TCGA-C8-A274 ZNF2 SNP Missense_Mutation 2 95847133 C T 29 60 BRCA TCGA-C8-A274 SLC4A11 SNP Silent 20 3211607 G C 45 57 BRCA TCGA-C8-A274 PIGU SNP Silent 20 33231980 G A 45 90 BRCA TCGA-C8-A274 GDAP1L1 SNP Silent 20 42907676 C G 29 96 BRCA TCGA-C8-A274 NCOA3 SNP Missense_Mutation 20 46255914 T C 50 68 BRCA TCGA-C8-A274 ZFP64 SNP Missense_Mutation 20 50769283 G C 43 100 BRCA TCGA-C8-A274 RUNX1 INS Frame_Shift_Ins 21 36252880 - G 11 92 BRCA TCGA-C8-A274 RUNX1 INS Frame_Shift_Ins 21 36252994 - C 50 92 BRCA TCGA-C8-A274 TXNRD2 SNP Missense_Mutation 22 19865914 C T 31 81 BRCA TCGA-C8-A274 PPIL2 SNP Missense_Mutation 22 22041956 A T 8 76 BRCA TCGA-C8-A274 TMEM31 SNP Missense_Mutation 23 102968633 G A 45 52 BRCA TCGA-C8-A274 LONRF3 SNP Missense_Mutation 23 118123497 G C 33 56 BRCA TCGA-C8-A274 PGRMC1 SNP Missense_Mutation 23 118370396 G A 45 78 BRCA TCGA-C8-A274 OCRL SNP Missense_Mutation 23 128723903 G A 45 56 BRCA TCGA-C8-A274 ATP11C SNP Splice_site 23 138878432 C A 24 98 BRCA TCGA-C8-A274 DMD SNP Silent 23 31496247 G C 41 55 BRCA TCGA-C8-A274 MAGEB16 SNP Missense_Mutation 23 35820374 G A 45 49 BRCA TCGA-C8-A274 GPR143 SNP Missense_Mutation 23 9693796 C A 30 62 BRCA TCGA-C8-A274 FANCD2 SNP Nonsense_Mutation 3 10089640 C T 29 88 BRCA TCGA-C8-A274 VGLL4 SNP Splice_site 3 11623773 T C 52 78 BRCA TCGA-C8-A274 ACPP SNP Missense_Mutation 3 132050535 G C 33 49 BRCA TCGA-C8-A274 IGSF10 SNP Silent 3 151165429 G T 43 44 BRCA TCGA-C8-A274 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-C8-A274 TRANK1 SNP Silent 3 36872506 C T 25 51 BRCA TCGA-C8-A274 LRRFIP2 SNP Silent 3 37114317 G A 41 54 BRCA TCGA-C8-A274 SCN11A SNP Missense_Mutation 3 38913709 G A 38 98 BRCA TCGA-C8-A274 ZNF167 SNP Silent 3 44612804 T C 61 46 BRCA TCGA-C8-A274 SETD2 SNP Missense_Mutation 3 47144879 C A 19 96 BRCA TCGA-C8-A274 ANAPC10 SNP Missense_Mutation 4 145985831 C T 20 97 BRCA TCGA-C8-A274 TIGD4 SNP Silent 4 153691716 T C 60 53 BRCA TCGA-C8-A274 FGA SNP Missense_Mutation 4 155507948 G T 36 50 BRCA TCGA-C8-A274 FBXL5 SNP Silent 4 15640233 G C 45 87 BRCA TCGA-C8-A274 HMGB2 SNP Missense_Mutation 4 174254097 C T 29 99 BRCA TCGA-C8-A274 PPARGC1A SNP Missense_Mutation 4 23814411 C G 29 97 BRCA TCGA-C8-A274 DCAF4L1 SNP Silent 4 41984214 G A 45 51 BRCA TCGA-C8-A274 GC SNP Missense_Mutation 4 72631239 T G 59 79 BRCA TCGA-C8-A274 SDAD1 SNP Silent 4 76878697 A T 5 44 BRCA TCGA-C8-A274 PTPN13 SNP Silent 4 87691103 G A 45 59 BRCA TCGA-C8-A274 MMRN1 SNP Missense_Mutation 4 90857679 A G 1 61 BRCA TCGA-C8-A274 SNX2 SNP Missense_Mutation 5 122153033 A C 8 78 BRCA TCGA-C8-A274 DOCK2 SNP Missense_Mutation 5 169461520 G C 33 57 BRCA TCGA-C8-A274 CDH12 SNP Missense_Mutation 5 21842404 C T 32 100 BRCA TCGA-C8-A274 GFM2 SNP Missense_Mutation 5 74047198 G A 48 100 BRCA TCGA-C8-A274 CMYA5 SNP Missense_Mutation 5 79057687 G A 33 96 BRCA TCGA-C8-A274 MCTP1 SNP Missense_Mutation 5 94267685 C T 29 88 BRCA TCGA-C8-A274 RHOBTB3 SNP Nonsense_Mutation 5 95084070 C G 29 73 BRCA TCGA-C8-A274 REV3L SNP Missense_Mutation 6 111696566 C T 32 82 BRCA TCGA-C8-A274 DSE SNP Missense_Mutation 6 116757178 A G 10 68 BRCA TCGA-C8-A274 TAAR6 SNP Missense_Mutation 6 132892456 G C 33 52 BRCA TCGA-C8-A274 CCDC170 SNP Nonsense_Mutation 6 151857537 G T 45 87 BRCA TCGA-C8-A274 SYNE1 SNP Missense_Mutation 6 152804231 C G 29 99 BRCA TCGA-C8-A274 FNDC1 SNP Silent 6 159660685 C A 29 49 BRCA TCGA-C8-A274 HIST1H3B SNP Silent 6 26032136 C T 32 98 BRCA TCGA-C8-A274 MRPL2 SNP Missense_Mutation 6 43022095 C T 22 98 BRCA TCGA-C8-A274 KCNQ5 SNP Missense_Mutation 6 73904286 G A 45 97 BRCA TCGA-C8-A274 SLC26A3 SNP Missense_Mutation 7 107431617 A T 10 51 BRCA TCGA-C8-A274 PDIA4 SNP Missense_Mutation 7 148718177 C T 29 88 BRCA TCGA-C8-A274 INTS1 SNP Missense_Mutation 7 1542644 G A 41 93 BRCA TCGA-C8-A274 INTS1 SNP Missense_Mutation 7 1542722 G C 33 92 BRCA TCGA-C8-A274 NPC1L1 SNP Missense_Mutation 7 44553138 C G 29 44 BRCA TCGA-C8-A274 SMURF1 SNP Missense_Mutation 7 98648569 A G 4 71 BRCA TCGA-C8-A274 CSMD3 SNP Missense_Mutation 8 113266484 G C 45 83 BRCA TCGA-C8-A274 ZFP41 SNP Missense_Mutation 8 144332515 G C 41 88 BRCA TCGA-C8-A274 SLC52A2 SNP Missense_Mutation 8 145583494 C G 32 57 BRCA TCGA-C8-A274 ADAM28 SNP Missense_Mutation 8 24209527 G T 45 55 BRCA TCGA-C8-A274 MCM4 SNP Missense_Mutation 8 48875562 G C 45 84 BRCA TCGA-C8-A274 WWP1 SNP Splice_Site 8 87437451 G A 35 95 BRCA TCGA-C8-A274 WWP1 SNP Nonsense_Mutation 8 87464813 C T 31 100 BRCA TCGA-C8-A274 PALM2 SNP Missense_Mutation 9 112705364 G A 38 47 BRCA TCGA-C8-A274 PALM2 SNP Missense_Mutation 9 112705539 C T 19 100 BRCA TCGA-C8-A274 C9orf78 SNP Silent 9 132595746 C T 29 50 BRCA TCGA-C8-A274 RAPGEF1 SNP Silent 9 134503379 G A 45 51 BRCA TCGA-C8-A274 ROR2 SNP Missense_Mutation 9 94487223 C T 23 82 BRCA TCGA-C8-A275 SLC30A7 SNP Missense_Mutation 1 101376704 G C 45 100 BRCA TCGA-C8-A275 LRIF1 SNP Missense_Mutation 1 111495184 G C 33 58 BRCA TCGA-C8-A275 WNT2B SNP Silent 1 113057694 C T 32 57 BRCA TCGA-C8-A275 PRAMEF2 SNP Nonsense_Mutation 1 12919911 G A 42 56 BRCA TCGA-C8-A275 PRDM2 INS In_Frame_Ins 1 14105121 - GAA 51 50 BRCA TCGA-C8-A275 RAB25 SNP Silent 1 156039538 G T 45 57 BRCA TCGA-C8-A275 FCRL5 SNP Missense_Mutation 1 157514217 G A 39 39 BRCA TCGA-C8-A275 CD1E SNP Silent 1 158324193 C T 32 46 BRCA TCGA-C8-A275 EGLN1 SNP Silent 1 231557515 G A 33 70 BRCA TCGA-C8-A275 KIAA1383 SNP Missense_Mutation 1 232943549 A G 12 51 BRCA TCGA-C8-A275 HNRNPR SNP Silent 1 23660097 G A 33 62 BRCA TCGA-C8-A275 DOCK7 SNP Missense_Mutation 1 62923257 C T 32 88 BRCA TCGA-C8-A275 COL24A1 SNP Missense_Mutation 1 86437030 C G 30 77 BRCA TCGA-C8-A275 BTRC SNP Missense_Mutation 10 103292145 G A 45 100 BRCA TCGA-C8-A275 ADAM12 SNP Missense_Mutation 10 127726840 C T 29 50 BRCA TCGA-C8-A275 ENKUR SNP Missense_Mutation 10 25273745 C G 32 53 BRCA TCGA-C8-A275 MYO3A SNP Missense_Mutation 10 26310566 C G 29 68 BRCA TCGA-C8-A275 KIAA0913 SNP Missense_Mutation 10 75552020 C G 32 45 BRCA TCGA-C8-A275 PLAU SNP Missense_Mutation 10 75671664 G C 45 60 BRCA TCGA-C8-A275 PIK3C2A SNP Silent 11 17124376 A G 3 52 BRCA TCGA-C8-A275 NELL1 SNP Silent 11 20940827 C T 24 67 BRCA TCGA-C8-A275 ZBTB3 SNP Missense_Mutation 11 62520917 G T 43 70 BRCA TCGA-C8-A275 PARPBP SNP Missense_Mutation 12 102569284 C T 29 88 BRCA TCGA-C8-A275 HECTD4 SNP Missense_Mutation 12 112686210 C G 32 99 BRCA TCGA-C8-A275 SLC15A5 SNP Missense_Mutation 12 16425679 C T 32 83 BRCA TCGA-C8-A275 TMTC1 SNP Nonsense_Mutation 12 29709842 G A 47 71 BRCA TCGA-C8-A275 ANO6 SNP Missense_Mutation 12 45741997 G C 33 98 BRCA TCGA-C8-A275 PPFIA2 SNP Silent 12 81657056 A G 13 54 BRCA TCGA-C8-A275 DYNC1H1 SNP Silent 14 102474586 G A 47 64 BRCA TCGA-C8-A275 OR4Q3 SNP Nonsense_Mutation 14 20215639 C G 29 80 BRCA TCGA-C8-A275 PPP2R3C SNP Missense_Mutation 14 35579802 A C 4 67 BRCA TCGA-C8-A275 MAP3K9 SNP Missense_Mutation 14 71199275 C G 29 57 BRCA TCGA-C8-A275 PLA2G4E SNP Silent 15 42292464 C T 29 64 BRCA TCGA-C8-A275 BNC1 SNP Silent 15 83933256 G A 45 76 BRCA TCGA-C8-A275 SYNM SNP Missense_Mutation 15 99666992 C G 23 64 BRCA TCGA-C8-A275 ERN2 SNP Missense_Mutation 16 23702226 C G 29 74 BRCA TCGA-C8-A275 ITGAM SNP Missense_Mutation 16 31341642 C T 28 77 BRCA TCGA-C8-A275 SAMD14 SNP Missense_Mutation 17 48195601 C G 23 73 BRCA TCGA-C8-A275 AKAP1 SNP Missense_Mutation 17 55183786 G C 45 55 BRCA TCGA-C8-A275 MPO SNP Missense_Mutation 17 56350265 T C 51 49 BRCA TCGA-C8-A275 YPEL2 SNP Silent 17 57430827 G A 41 50 BRCA TCGA-C8-A275 CACNG4 SNP Silent 17 65026607 C T 31 52 BRCA TCGA-C8-A275 FAM20A SNP Missense_Mutation 17 66538848 G C 33 89 BRCA TCGA-C8-A275 ACAP1 SNP Missense_Mutation 17 7247037 G C 45 66 BRCA TCGA-C8-A275 TP53 SNP Missense_Mutation 17 7577141 C T 30 95 BRCA TCGA-C8-A275 LOXHD1 SNP Missense_Mutation 18 44190796 C T 29 54 BRCA TCGA-C8-A275 CCDC151 SNP Missense_Mutation 19 11537068 C G 32 68 BRCA TCGA-C8-A275 ZNF799 SNP Missense_Mutation 19 12501963 C T 25 55 BRCA TCGA-C8-A275 PDE4C SNP Missense_Mutation 19 18322678 G A 40 94 BRCA TCGA-C8-A275 ZNF554 SNP Nonsense_Mutation 19 2834599 C T 27 53 BRCA TCGA-C8-A275 ZNF569 SNP Missense_Mutation 19 37904775 C G 32 58 BRCA TCGA-C8-A275 FAM98C SNP Silent 19 38895681 C G 30 47 BRCA TCGA-C8-A275 PSG5 SNP Silent 19 43690498 G A 45 47 BRCA TCGA-C8-A275 PHLDB3 SNP Missense_Mutation 19 44006383 G C 33 53 BRCA TCGA-C8-A275 CCDC8 SNP Missense_Mutation 19 46914605 C A 21 76 BRCA TCGA-C8-A275 NLRP12 SNP Missense_Mutation 19 54304506 G T 41 68 BRCA TCGA-C8-A275 NLRP12 SNP Silent 19 54310781 G C 45 53 BRCA TCGA-C8-A275 OR2Z1 SNP Silent 19 8841852 C G 29 51 BRCA TCGA-C8-A275 TBC1D8 SNP Silent 2 101646084 C T 29 60 BRCA TCGA-C8-A275 LCT SNP Missense_Mutation 2 136562528 C T 26 67 BRCA TCGA-C8-A275 SCN7A SNP Missense_Mutation 2 167330816 T A 50 51 BRCA TCGA-C8-A275 ZAK SNP Missense_Mutation 2 173955764 C T 31 67 BRCA TCGA-C8-A275 CFLAR SNP Silent 2 201997758 G T 45 53 BRCA TCGA-C8-A275 ITSN2 SNP Missense_Mutation 2 24433779 G T 41 52 BRCA TCGA-C8-A275 ADCY3 DEL Frame_Shift_Del 2 25042837 AG - 7 27 BRCA TCGA-C8-A275 WDR43 SNP Silent 2 29169540 C T 23 43 BRCA TCGA-C8-A275 SPTLC3 SNP Silent 20 13029712 C G 29 54 BRCA TCGA-C8-A275 RIN2 SNP Silent 20 19956130 C T 31 49 BRCA TCGA-C8-A275 GGTLC1 SNP Missense_Mutation 20 23966380 T G 56 73 BRCA TCGA-C8-A275 NRIP1 SNP Missense_Mutation 21 16337186 G A 41 62 BRCA TCGA-C8-A275 PCNT SNP Silent 21 47819692 C T 31 40 BRCA TCGA-C8-A275 RRP7A SNP Silent 22 42910724 G A 48 57 BRCA TCGA-C8-A275 SMC1B SNP Missense_Mutation 22 45755687 C T 30 82 BRCA TCGA-C8-A275 PKDREJ SNP Silent 22 46653441 G A 33 53 BRCA TCGA-C8-A275 PKDREJ SNP Missense_Mutation 22 46655016 G C 33 45 BRCA TCGA-C8-A275 FGF13 SNP Missense_Mutation 23 137715074 C G 32 61 BRCA TCGA-C8-A275 MAGEC3 SNP Missense_Mutation 23 140983304 G A 37 41 BRCA TCGA-C8-A275 HCFC1 SNP Missense_Mutation 23 153223547 C G 20 75 BRCA TCGA-C8-A275 OPN1LW SNP Missense_Mutation 23 153418542 C G 32 80 BRCA TCGA-C8-A275 DMD SNP Missense_Mutation 23 32380914 C G 32 60 BRCA TCGA-C8-A275 CFP SNP Missense_Mutation 23 47485763 C T 30 61 BRCA TCGA-C8-A275 GNL3L SNP Missense_Mutation 23 54574726 G C 41 88 BRCA TCGA-C8-A275 AWAT1 SNP Missense_Mutation 23 69459634 C G 29 92 BRCA TCGA-C8-A275 SLC7A3 SNP Missense_Mutation 23 70148349 C T 32 51 BRCA TCGA-C8-A275 ACRC SNP Missense_Mutation 23 70832261 G C 45 53 BRCA TCGA-C8-A275 CXCR3 SNP Missense_Mutation 23 70837215 G A 37 43 BRCA TCGA-C8-A275 PCDH19 SNP Missense_Mutation 23 99551396 G C 33 82 BRCA TCGA-C8-A275 WDR52 SNP Splice_Site 3 113152517 C G 32 59 BRCA TCGA-C8-A275 ATG7 SNP Missense_Mutation 3 11421470 G C 45 92 BRCA TCGA-C8-A275 HTR3D SNP Missense_Mutation 3 183754563 G T 34 50 BRCA TCGA-C8-A275 EHHADH SNP Missense_Mutation 3 184910418 G A 45 60 BRCA TCGA-C8-A275 FETUB SNP Splice_site 3 186370419 G A 45 57 BRCA TCGA-C8-A275 SCN10A SNP Missense_Mutation 3 38768498 C T 29 95 BRCA TCGA-C8-A275 C4orf45 SNP Missense_Mutation 4 159894264 G T 48 53 BRCA TCGA-C8-A275 PRKG2 SNP Silent 4 82027041 G C 45 52 BRCA TCGA-C8-A275 TRIO SNP Missense_Mutation 5 14290927 G A 45 85 BRCA TCGA-C8-A275 STK32A SNP Missense_Mutation 5 146703558 G A 41 100 BRCA TCGA-C8-A275 ADRB2 SNP Missense_Mutation 5 148206482 G A 37 78 BRCA TCGA-C8-A275 FAM71B SNP Missense_Mutation 5 156593170 C T 29 75 BRCA TCGA-C8-A275 DOCK2 SNP Silent 5 169145739 G A 45 54 BRCA TCGA-C8-A275 RANBP17 SNP Missense_Mutation 5 170319487 G T 43 98 BRCA TCGA-C8-A275 SREK1 SNP Missense_Mutation 5 65459733 C T 29 97 BRCA TCGA-C8-A275 SIM1 SNP Missense_Mutation 6 100896383 C G 30 100 BRCA TCGA-C8-A275 UTRN SNP Missense_Mutation 6 144844314 G A 45 82 BRCA TCGA-C8-A275 SLC35B2 SNP Missense_Mutation 6 44224198 C T 17 96 BRCA TCGA-C8-A275 LRRC1 SNP Missense_Mutation 6 53764633 C T 29 98 BRCA TCGA-C8-A275 IBTK SNP Missense_Mutation 6 82906055 G A 41 97 BRCA TCGA-C8-A275 MDN1 SNP Missense_Mutation 6 90400436 C T 30 82 BRCA TCGA-C8-A275 LAMB4 SNP Missense_Mutation 7 107669499 C T 32 50 BRCA TCGA-C8-A275 MRPS33 SNP Missense_Mutation 7 140706249 C G 32 97 BRCA TCGA-C8-A275 STEAP1B SNP Missense_Mutation 7 22478332 C T 26 45 BRCA TCGA-C8-A275 FAM20C SNP Missense_Mutation 7 298645 C G 30 48 BRCA TCGA-C8-A275 GBAS SNP Silent 7 56051543 C G 29 53 BRCA TCGA-C8-A275 KAT6A SNP Missense_Mutation 8 41791830 T C 50 76 BRCA TCGA-C8-A275 FAM82B SNP Silent 8 87489536 G A 48 50 BRCA TCGA-C8-A275 GABBR2 SNP Silent 9 101073404 G A 37 46 BRCA TCGA-C8-A275 ZFP37 SNP Missense_Mutation 9 115806009 G C 45 50 BRCA TCGA-C8-A275 NCS1 SNP Missense_Mutation 9 132982059 G A 41 95 BRCA TCGA-C8-A275 RALGDS SNP Missense_Mutation 9 135977080 A G 10 77 BRCA TCGA-C8-A275 ADAMTS13 SNP Missense_Mutation 9 136291377 G A 39 78 BRCA TCGA-C8-A275 FCN2 SNP Silent 9 137772751 G A 39 43 BRCA TCGA-C8-A275 NOXA1 SNP Missense_Mutation 9 140328693 G C 41 65 BRCA TCGA-C8-A275 NUDT2 SNP Missense_Mutation 9 34343328 C G 21 78 BRCA TCGA-C8-A275 TJP2 SNP Missense_Mutation 9 71855021 C G 29 100 BRCA TCGA-C8-A275 GDA SNP Silent 9 74810496 G C 45 50 BRCA TCGA-C8-A278 GBA SNP Missense_Mutation 1 155207291 C G 29 36 BRCA TCGA-C8-A278 PHC2 SNP Missense_Mutation 1 33797902 G A 37 92 BRCA TCGA-C8-A278 CALML5 SNP Missense_Mutation 10 5541283 G A 40 65 BRCA TCGA-C8-A278 PANK1 SNP Missense_Mutation 10 91353062 C T 29 86 BRCA TCGA-C8-A278 NDFIP2 SNP Silent 13 80113888 C A 25 48 BRCA TCGA-C8-A278 C14orf80 SNP Missense_Mutation 14 105960224 C T 32 68 BRCA TCGA-C8-A278 RIPK3 SNP Missense_Mutation 14 24808688 C T 31 79 BRCA TCGA-C8-A278 ZC3H7A SNP Splice_site 16 11856527 C G 24 84 BRCA TCGA-C8-A278 SRL SNP Missense_Mutation 16 4245638 T G 51 79 BRCA TCGA-C8-A278 KRT28 SNP Missense_Mutation 17 38950160 A G 14 64 BRCA TCGA-C8-A278 CNP SNP Silent 17 40125630 A C 6 30 BRCA TCGA-C8-A278 SNF8 SNP Missense_Mutation 17 47009050 G C 45 74 BRCA TCGA-C8-A278 TP53 SNP Missense_Mutation 17 7578427 T G 59 58 BRCA TCGA-C8-A278 FOXA3 SNP Missense_Mutation 19 46376150 C T 27 62 BRCA TCGA-C8-A278 SIGLEC7 SNP Missense_Mutation 19 51656410 G T 46 55 BRCA TCGA-C8-A278 TTN SNP Silent 2 179598483 G A 40 51 BRCA TCGA-C8-A278 SEPT2 SNP Missense_Mutation 2 242289558 G T 42 65 BRCA TCGA-C8-A278 C2orf56 SNP Missense_Mutation 2 37458853 G A 36 52 BRCA TCGA-C8-A278 TASP1 SNP Silent 20 13415695 A G 9 53 BRCA TCGA-C8-A278 RRBP1 SNP Missense_Mutation 20 17639834 T C 56 56 BRCA TCGA-C8-A278 ANGPT4 SNP Missense_Mutation 20 858964 C T 23 99 BRCA TCGA-C8-A278 CHADL SNP Missense_Mutation 22 41632585 G A 37 60 BRCA TCGA-C8-A278 RABL2B SNP Missense_Mutation 22 51220689 C G 30 78 BRCA TCGA-C8-A278 RAB40A SNP Missense_Mutation 23 102755198 T G 51 54 BRCA TCGA-C8-A278 PIK3CA SNP Missense_Mutation 3 178952063 A G 8 91 BRCA TCGA-C8-A278 PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA TCGA-C8-A278 MUC4 SNP Missense_Mutation 3 195506293 T C 52 47 BRCA TCGA-C8-A278 MUC4 SNP Missense_Mutation 3 195506339 T G 59 33 BRCA TCGA-C8-A278 PDS5A SNP Silent 4 39881426 T G 63 46 BRCA TCGA-C8-A278 EXOC2 SNP Splice_site 6 497489 C T 18 85 BRCA TCGA-C8-A278 HERPUD2 SNP Missense_Mutation 7 35712884 G A 40 87 BRCA TCGA-C8-A278 GOLGA2 DEL In_Frame_Del 9 131020796 CCT - 26 53 BRCA TCGA-C8-A27A CDC123 SNP Missense_Mutation 10 12259451 G A 40 64 BRCA TCGA-C8-A27A PGR SNP Missense_Mutation 11 100962590 A G 8 93 BRCA TCGA-C8-A27A FBXW8 SNP Silent 12 117448250 C T 19 67 BRCA TCGA-C8-A27A SLC6A15 SNP Missense_Mutation 12 85270296 G A 37 79 BRCA TCGA-C8-A27A MCF2L SNP Missense_Mutation 13 113750743 G A 38 50 BRCA TCGA-C8-A27A RTL1 SNP Silent 14 101349800 G A 37 43 BRCA TCGA-C8-A27A LGALS9 SNP Missense_Mutation 17 25965319 G A 35 61 BRCA TCGA-C8-A27A TP53 SNP Missense_Mutation 17 7578253 C A 30 96 BRCA TCGA-C8-A27A DSG1 SNP Missense_Mutation 18 28934500 G A 45 88 BRCA TCGA-C8-A27A PPAN-P2RY11 SNP Missense_Mutation 19 10224638 G C 40 50 BRCA TCGA-C8-A27A DMKN SNP Missense_Mutation 19 36002404 C T 28 50 BRCA TCGA-C8-A27A FCAR SNP Missense_Mutation 19 55396901 T A 52 56 BRCA TCGA-C8-A27A NCL SNP Missense_Mutation 2 232320764 G A 37 53 BRCA TCGA-C8-A27A UGT1A10 SNP Missense_Mutation 2 234545248 A T 3 55 BRCA TCGA-C8-A27A RALGAPA2 SNP Silent 20 20527462 C T 31 49 BRCA TCGA-C8-A27A MED12 SNP Missense_Mutation 23 70344921 G T 33 62 BRCA TCGA-C8-A27A ALCAM SNP Missense_Mutation 3 105238944 G A 41 86 BRCA TCGA-C8-A27A FILIP1L SNP Silent 3 99568867 G A 39 42 BRCA TCGA-C8-A27A EPB41L4A SNP Silent 5 111615976 C T 29 50 BRCA TCGA-C8-A27A UIMC1 SNP Missense_Mutation 5 176396604 T C 62 59 BRCA TCGA-C8-A27A TNXB SNP Missense_Mutation 6 32029275 A G 10 54 BRCA TCGA-C8-A27A ASIC3 SNP Missense_Mutation 7 150746033 G A 38 94 BRCA TCGA-C8-A27A HOXA13 SNP Silent 7 27239130 G A 40 76 BRCA TCGA-C8-A27A TFPI2 SNP Silent 7 93519525 C A 17 43 BRCA TCGA-C8-A27A ARHGEF10 SNP Missense_Mutation 8 1833860 T C 61 83 BRCA TCGA-C8-A27A C8orf34 SNP Silent 8 69381036 C G 22 67 BRCA TCGA-C8-A27A POP1 SNP Nonsense_Mutation 8 99168386 C G 19 43 BRCA TCGA-C8-A27A RAPGEF1 SNP Silent 9 134501721 C T 19 41 BRCA TCGA-C8-A27A PRUNE2 SNP Missense_Mutation 9 79319916 C G 32 59 BRCA TCGA-C8-A27B ADAMTSL4 SNP Missense_Mutation 1 150525701 G A 41 72 BRCA TCGA-C8-A27B CERS2 SNP Missense_Mutation 1 150940918 C T 27 73 BRCA TCGA-C8-A27B SPRR1A SNP Silent 1 152957724 G A 33 64 BRCA TCGA-C8-A27B ASH1L SNP Missense_Mutation 1 155450828 C G 29 63 BRCA TCGA-C8-A27B SMG5 SNP Missense_Mutation 1 156236117 G T 35 56 BRCA TCGA-C8-A27B ADCY10 SNP Silent 1 167865858 A G 4 48 BRCA TCGA-C8-A27B PRG4 SNP Missense_Mutation 1 186266033 A C 14 56 BRCA TCGA-C8-A27B KLHDC7A SNP Missense_Mutation 1 18808277 G C 40 52 BRCA TCGA-C8-A27B KIAA1383 DEL Frame_Shift_Del 1 232940918 CTCACTGT - 20 45 BRCA TCGA-C8-A27B SCMH1 SNP Missense_Mutation 1 41499688 T C 49 52 BRCA TCGA-C8-A27B SLC1A7 SNP Missense_Mutation 1 53556433 G C 44 71 BRCA TCGA-C8-A27B GBP4 SNP Missense_Mutation 1 89658731 C G 29 64 BRCA TCGA-C8-A27B DNTTIP2 SNP Missense_Mutation 1 94343060 T A 62 76 BRCA TCGA-C8-A27B LOXL4 SNP Missense_Mutation 10 100017441 C G 24 87 BRCA TCGA-C8-A27B DMBT1 SNP Missense_Mutation 10 124389917 C G 32 83 BRCA TCGA-C8-A27B AGAP5 SNP Missense_Mutation 10 75435124 C G 30 76 BRCA TCGA-C8-A27B TSPAN14 SNP Silent 10 82264498 C G 32 55 BRCA TCGA-C8-A27B KBTBD3 SNP Missense_Mutation 11 105929688 C G 32 98 BRCA TCGA-C8-A27B MLL SNP Missense_Mutation 11 118344879 C G 30 95 BRCA TCGA-C8-A27B IGF2-AS SNP Missense_Mutation 11 2167538 C T 28 51 BRCA TCGA-C8-A27B WT1 SNP Missense_Mutation 11 32410657 G A 39 100 BRCA TCGA-C8-A27B CRY2 SNP Missense_Mutation 11 45891248 G C 41 100 BRCA TCGA-C8-A27B NUP160 SNP Missense_Mutation 11 47814408 G A 34 96 BRCA TCGA-C8-A27B OR5M11 SNP Silent 11 56310392 C A 21 56 BRCA TCGA-C8-A27B SLC43A3 SNP Missense_Mutation 11 57177571 G A 35 71 BRCA TCGA-C8-A27B ANO1 SNP Missense_Mutation 11 69950207 C G 21 70 BRCA TCGA-C8-A27B UCP3 SNP Missense_Mutation 11 73718048 C T 26 50 BRCA TCGA-C8-A27B MYO7A SNP Missense_Mutation 11 76903310 A G 14 90 BRCA TCGA-C8-A27B MYBPC1 SNP Missense_Mutation 12 102056175 G C 47 99 BRCA TCGA-C8-A27B FAM186B SNP Missense_Mutation 12 49994357 C G 30 54 BRCA TCGA-C8-A27B PAN2 SNP Missense_Mutation 12 56721845 C G 32 52 BRCA TCGA-C8-A27B CHD4 SNP Missense_Mutation 12 6710551 C G 28 82 BRCA TCGA-C8-A27B CHD4 SNP Missense_Mutation 12 6711295 G T 47 61 BRCA TCGA-C8-A27B CD4 DEL Splice_site 12 6924157 AGGTAAGGGA - 15 52 BRCA TCGA-C8-A27B RNF17 SNP Missense_Mutation 13 25428135 A G 9 54 BRCA TCGA-C8-A27B POLR1D SNP Missense_Mutation 13 28239878 A C 1 82 BRCA TCGA-C8-A27B POLR1D DEL In_Frame_Del 13 28239894 ATA - 8 69 BRCA TCGA-C8-A27B SPG20 SNP Missense_Mutation 13 36909960 T G 63 68 BRCA TCGA-C8-A27B CCNA1 DEL In_Frame_Del 13 37011769 ATCACAAGA - 12 42 BRCA TCGA-C8-A27B STOML3 SNP Missense_Mutation 13 39542611 C G 32 99 BRCA TCGA-C8-A27B RTN1 DEL In_Frame_Del 14 60212735 CTC - 20 50 BRCA TCGA-C8-A27B MEIS2 SNP Missense_Mutation 15 37390202 C T 31 86 BRCA TCGA-C8-A27B SLC24A5 SNP Silent 15 48413271 G A 37 46 BRCA TCGA-C8-A27B CLPX SNP Missense_Mutation 15 65471352 G C 33 95 BRCA TCGA-C8-A27B UACA DEL Frame_Shift_Del 15 70979933 CATATTGTTGGCCTACT - 17 96 BRCA TCGA-C8-A27B NEO1 SNP Missense_Mutation 15 73428353 G C 33 86 BRCA TCGA-C8-A27B MORF4L1 SNP Missense_Mutation 15 79178563 C G 26 93 BRCA TCGA-C8-A27B SH3GL3 SNP Nonsense_Mutation 15 84241415 C T 29 99 BRCA TCGA-C8-A27B FANCI SNP Silent 15 89838218 G C 45 56 BRCA TCGA-C8-A27B TTC23 SNP Missense_Mutation 15 99759224 C G 32 74 BRCA TCGA-C8-A27B ABCA3 SNP Silent 16 2339579 G T 41 55 BRCA TCGA-C8-A27B MYH13 SNP Missense_Mutation 17 10222306 C T 24 82 BRCA TCGA-C8-A27B SUPT6H SNP Missense_Mutation 17 27022374 G C 41 98 BRCA TCGA-C8-A27B SLFN14 SNP Missense_Mutation 17 33884544 C G 32 72 BRCA TCGA-C8-A27B ACLY SNP Missense_Mutation 17 40030139 C G 26 100 BRCA TCGA-C8-A27B ACLY SNP Missense_Mutation 17 40030212 C G 21 80 BRCA TCGA-C8-A27B NPEPPS SNP Missense_Mutation 17 45689957 C G 32 86 BRCA TCGA-C8-A27B EFCAB3 SNP Missense_Mutation 17 60484535 G C 45 79 BRCA TCGA-C8-A27B TP53 SNP Missense_Mutation 17 7578271 T C 51 76 BRCA TCGA-C8-A27B ABR SNP Silent 17 953383 C T 30 59 BRCA TCGA-C8-A27B ZNF519 SNP Missense_Mutation 18 14105980 C G 29 64 BRCA TCGA-C8-A27B ANKRD29 SNP Missense_Mutation 18 21197771 C G 29 51 BRCA TCGA-C8-A27B TXNDC2 SNP Missense_Mutation 18 9887863 C A 20 71 BRCA TCGA-C8-A27B RPL18A SNP Missense_Mutation 19 17972952 G A 38 79 BRCA TCGA-C8-A27B ZNF43 SNP Missense_Mutation 19 21992075 T C 57 64 BRCA TCGA-C8-A27B FEM1A SNP Missense_Mutation 19 4793084 C G 31 52 BRCA TCGA-C8-A27B FUT6 SNP Missense_Mutation 19 5832255 G C 44 47 BRCA TCGA-C8-A27B ZNF587 SNP Missense_Mutation 19 58371075 G C 43 70 BRCA TCGA-C8-A27B ACSBG2 SNP Missense_Mutation 19 6183146 C G 29 56 BRCA TCGA-C8-A27B ZNF121 SNP Silent 19 9677204 A G 7 51 BRCA TCGA-C8-A27B IL1RL2 SNP Missense_Mutation 2 102805699 C G 18 61 BRCA TCGA-C8-A27B C2orf49 SNP Missense_Mutation 2 105954138 G A 41 86 BRCA TCGA-C8-A27B DGKD SNP Silent 2 234357967 G A 45 53 BRCA TCGA-C8-A27B NCOA1 SNP Missense_Mutation 2 24991255 G A 45 98 BRCA TCGA-C8-A27B EFEMP1 SNP Silent 2 56145044 T G 55 14 BRCA TCGA-C8-A27B SPR SNP Silent 2 73115498 G A 45 57 BRCA TCGA-C8-A27B RAD21L1 SNP Missense_Mutation 20 1234974 G A 37 58 BRCA TCGA-C8-A27B DNMT3B SNP Missense_Mutation 20 31374344 G A 41 72 BRCA TCGA-C8-A27B SLC25A1 SNP Missense_Mutation 22 19164129 C T 21 100 BRCA TCGA-C8-A27B SLC25A1 SNP Silent 22 19164682 G C 47 49 BRCA TCGA-C8-A27B ADORA2A SNP Missense_Mutation 22 24837096 G C 38 84 BRCA TCGA-C8-A27B PRR14L SNP Silent 22 32109100 T G 50 47 BRCA TCGA-C8-A27B RPL3 SNP Silent 22 39711522 C G 29 57 BRCA TCGA-C8-A27B EP300 SNP Missense_Mutation 22 41566475 A C 8 92 BRCA TCGA-C8-A27B NHP2L1 SNP Silent 22 42071108 C A 17 56 BRCA TCGA-C8-A27B CELSR1 SNP Missense_Mutation 22 46761272 C T 31 96 BRCA TCGA-C8-A27B FRMD7 SNP Missense_Mutation 23 131212589 G T 45 80 BRCA TCGA-C8-A27B CNGA2 SNP Nonsense_Mutation 23 150911600 A T 5 66 BRCA TCGA-C8-A27B GDI1 SNP Silent 23 153668821 C T 19 49 BRCA TCGA-C8-A27B PLXNA3 SNP Nonsense_Mutation 23 153695976 C A 31 95 BRCA TCGA-C8-A27B GAB3 SNP Missense_Mutation 23 153924265 C G 32 78 BRCA TCGA-C8-A27B CTPS2 SNP Silent 23 16720990 T G 55 33 BRCA TCGA-C8-A27B IL1RAPL1 SNP Missense_Mutation 23 29417323 C G 32 53 BRCA TCGA-C8-A27B HUWE1 SNP Missense_Mutation 23 53631744 A C 11 67 BRCA TCGA-C8-A27B ALAS2 SNP Missense_Mutation 23 55046843 C T 29 65 BRCA TCGA-C8-A27B ABI3BP SNP Missense_Mutation 3 100471647 C G 29 60 BRCA TCGA-C8-A27B ATP6V1A SNP Missense_Mutation 3 113517105 G C 33 100 BRCA TCGA-C8-A27B GOLGB1 SNP Missense_Mutation 3 121409716 G A 33 62 BRCA TCGA-C8-A27B CASR DEL Frame_Shift_Del 3 121975971 GCCATAGAGGAGATAAACAGCA - 46 86 BRCA TCGA-C8-A27B MCM2 SNP Silent 3 127327260 G A 35 64 BRCA TCGA-C8-A27B COPG1 SNP Silent 3 128973842 G A 35 59 BRCA TCGA-C8-A27B GRK7 SNP Missense_Mutation 3 141535617 G C 41 87 BRCA TCGA-C8-A27B IGSF10 SNP Missense_Mutation 3 151163081 G C 33 64 BRCA TCGA-C8-A27B PLD1 SNP Missense_Mutation 3 171320875 C G 21 100 BRCA TCGA-C8-A27B NKTR SNP Missense_Mutation 3 42678814 A G 1 67 BRCA TCGA-C8-A27B NISCH SNP Silent 3 52521224 C G 23 43 BRCA TCGA-C8-A27B ROBO1 SNP Missense_Mutation 3 78656060 C G 32 74 BRCA TCGA-C8-A27B ROBO1 DEL Splice_Site 3 78742501 ACCCAACTAAAACAAA - 10 90 BRCA TCGA-C8-A27B MAEA SNP Missense_Mutation 4 1330721 C T 28 79 BRCA TCGA-C8-A27B CLDN22 SNP Missense_Mutation 4 184240911 G T 47 100 BRCA TCGA-C8-A27B FBN2 SNP Missense_Mutation 5 127611744 C A 30 78 BRCA TCGA-C8-A27B SPOCK1 SNP Missense_Mutation 5 136403503 G C 47 78 BRCA TCGA-C8-A27B BRD8 SNP Missense_Mutation 5 137481544 G C 35 75 BRCA TCGA-C8-A27B TRIM23 SNP Missense_Mutation 5 64907435 G C 45 95 BRCA TCGA-C8-A27B GTF3C6 SNP Missense_Mutation 6 111280417 G T 33 84 BRCA TCGA-C8-A27B SERPINB1 SNP Missense_Mutation 6 2840702 G C 42 73 BRCA TCGA-C8-A27B ANKS1A SNP Missense_Mutation 6 35051198 C G 32 98 BRCA TCGA-C8-A27B MCM3 SNP Missense_Mutation 6 52138116 C G 32 86 BRCA TCGA-C8-A27B SMAP1 SNP Missense_Mutation 6 71508424 C A 21 69 BRCA TCGA-C8-A27B RREB1 SNP Missense_Mutation 6 7248826 G C 33 84 BRCA TCGA-C8-A27B CPED1 SNP Missense_Mutation 7 120655806 C G 29 52 BRCA TCGA-C8-A27B CPED1 SNP Missense_Mutation 7 120767288 C A 20 54 BRCA TCGA-C8-A27B CARD11 SNP Missense_Mutation 7 2978400 C G 24 54 BRCA TCGA-C8-A27B INHBA SNP Missense_Mutation 7 41729394 G A 38 51 BRCA TCGA-C8-A27B ZMIZ2 SNP Missense_Mutation 7 44795851 G A 45 91 BRCA TCGA-C8-A27B ZNF679 SNP Missense_Mutation 7 63726567 T C 51 74 BRCA TCGA-C8-A27B PCLO SNP Nonsense_Mutation 7 82579907 C A 32 90 BRCA TCGA-C8-A27B PCLO SNP Missense_Mutation 7 82784791 T G 56 70 BRCA TCGA-C8-A27B UBR5 SNP Missense_Mutation 8 103297407 C T 32 100 BRCA TCGA-C8-A27B NDRG1 SNP Missense_Mutation 8 134266813 G A 39 74 BRCA TCGA-C8-A27B ZNF250 SNP Missense_Mutation 8 146106959 G A 38 67 BRCA TCGA-C8-A27B KAT6A SNP Silent 8 41790605 G A 45 69 BRCA TCGA-C8-A27B FRRS1L SNP Silent 9 111903756 A G 8 49 BRCA TCGA-C8-A27B COL5A1 SNP Missense_Mutation 9 137687118 G C 44 95 BRCA TCGA-C8-A27B DENND4C SNP Missense_Mutation 9 19346465 G C 36 96 BRCA TCGA-C8-A27B FRMPD1 SNP Missense_Mutation 9 37740228 T A 59 46 BRCA TCGA-C8-A27B KIAA1432 SNP Missense_Mutation 9 5763167 G C 34 98 BRCA TCGA-C8-A27B RMI1 SNP Missense_Mutation 9 86616601 G A 33 74 BRCA TCGA-C8-A27B FAM22F SNP Missense_Mutation 9 97082499 A T 5 47 BRCA TCGA-D8-A13Y KIF1B SNP Missense_Mutation 1 10397180 G A 41 100 BRCA TCGA-D8-A13Y C1orf43 SNP Missense_Mutation 1 154185071 G A 41 65 BRCA TCGA-D8-A13Y ASH1L SNP Missense_Mutation 1 155451186 T G 64 76 BRCA TCGA-D8-A13Y COL16A1 SNP Missense_Mutation 1 32122636 C T 32 86 BRCA TCGA-D8-A13Y MED8 SNP Nonsense_Mutation 1 43852271 G C 45 85 BRCA TCGA-D8-A13Y SSX2IP SNP Silent 1 85136470 T C 55 63 BRCA TCGA-D8-A13Y CUBN SNP Missense_Mutation 10 17126407 G A 42 59 BRCA TCGA-D8-A13Y ZNF488 SNP Missense_Mutation 10 48371106 C A 28 61 BRCA TCGA-D8-A13Y HMBS SNP Missense_Mutation 11 118963868 C T 31 53 BRCA TCGA-D8-A13Y OR8G5 SNP Silent 11 124135016 C T 29 56 BRCA TCGA-D8-A13Y MUC5B DEL Splice_Site 11 1251029 CAGCTCCTGGTACTTATGAGCCCAC - 25 56 BRCA TCGA-D8-A13Y FNBP4 SNP Missense_Mutation 11 47753007 C T 32 64 BRCA TCGA-D8-A13Y TRIM48 SNP Missense_Mutation 11 55032759 G A 48 48 BRCA TCGA-D8-A13Y OR52H1 DEL Frame_Shift_Del 11 5566050 C - 26 52 BRCA TCGA-D8-A13Y OR5I1 SNP Missense_Mutation 11 55703513 A T 15 73 BRCA TCGA-D8-A13Y TRIM5 DEL In_Frame_Del 11 5701072 GACCTTCCCGTC - 45 58 BRCA TCGA-D8-A13Y STX5 SNP Silent 11 62595056 G A 46 56 BRCA TCGA-D8-A13Y MAP3K11 SNP Missense_Mutation 11 65374961 C T 28 64 BRCA TCGA-D8-A13Y UNC93B5 SNP Missense_Mutation 11 67483428 C T 19 49 BRCA TCGA-D8-A13Y APOLD1 SNP Missense_Mutation 12 12940449 G A 37 81 BRCA TCGA-D8-A13Y SOX5 SNP Silent 12 23887621 G A 41 66 BRCA TCGA-D8-A13Y PAN2 SNP Silent 12 56713711 C T 29 64 BRCA TCGA-D8-A13Y GPR12 SNP Missense_Mutation 13 27333003 G A 39 100 BRCA TCGA-D8-A13Y TRPC4 SNP Missense_Mutation 13 38229311 T A 51 92 BRCA TCGA-D8-A13Y CLK3 SNP Missense_Mutation 15 74914837 G A 45 100 BRCA TCGA-D8-A13Y CSPG4 DEL Frame_Shift_Del 15 75980799 GACTGCCTCTGAGGCACGTGCTGTG - 37 29 BRCA TCGA-D8-A13Y MON1B SNP Missense_Mutation 16 77227443 G C 45 65 BRCA TCGA-D8-A13Y MYH1 SNP Missense_Mutation 17 10399833 G A 38 70 BRCA TCGA-D8-A13Y TBKBP1 SNP Nonsense_Mutation 17 45785815 G T 41 75 BRCA TCGA-D8-A13Y C17orf107 SNP Silent 17 4803317 G A 45 49 BRCA TCGA-D8-A13Y ACE SNP Missense_Mutation 17 61558968 C A 32 63 BRCA TCGA-D8-A13Y TP53 DEL Frame_Shift_Del 17 7578503 CAGGGCAGGTCTTGGC - 17 63 BRCA TCGA-D8-A13Y DCC SNP Silent 18 50278518 C T 23 46 BRCA TCGA-D8-A13Y CYB5A SNP Silent 18 71959066 C T 24 45 BRCA TCGA-D8-A13Y HAUS5 SNP Missense_Mutation 19 36109508 G A 39 66 BRCA TCGA-D8-A13Y RYR1 SNP Missense_Mutation 19 38954480 G A 41 94 BRCA TCGA-D8-A13Y ZNF560 SNP Missense_Mutation 19 9577519 G A 37 67 BRCA TCGA-D8-A13Y ALPP SNP Silent 2 233244601 G T 44 51 BRCA TCGA-D8-A13Y PREPL SNP Missense_Mutation 2 44565657 C G 29 65 BRCA TCGA-D8-A13Y LOC100287788 SNP Splice_Site 2 74605024 G C 33 50 BRCA TCGA-D8-A13Y C2orf51 DEL Frame_Shift_Del 2 88828895 GCTACCT - 42 62 BRCA TCGA-D8-A13Y KIAA1755 DEL Frame_Shift_Del 20 36841609 A - 7 26 BRCA TCGA-D8-A13Y KIAA1755 DEL Frame_Shift_Del 20 36841611 GCAGCTTGTGGGA - 42 42 BRCA TCGA-D8-A13Y ZNF512B SNP Silent 20 62592679 G A 35 70 BRCA TCGA-D8-A13Y PAK7 SNP Silent 20 9546864 G C 35 30 BRCA TCGA-D8-A13Y DDX17 SNP Missense_Mutation 22 38888051 C G 32 59 BRCA TCGA-D8-A13Y ZC3H7B SNP Missense_Mutation 22 41734248 G A 35 65 BRCA TCGA-D8-A13Y HTATSF1 SNP Missense_Mutation 23 135593486 G A 41 62 BRCA TCGA-D8-A13Y ZNF41 SNP Missense_Mutation 23 47308385 G C 45 58 BRCA TCGA-D8-A13Y PCDH11X SNP Missense_Mutation 23 91873742 G A 44 53 BRCA TCGA-D8-A13Y HGD SNP Missense_Mutation 3 120394696 A C 5 51 BRCA TCGA-D8-A13Y TSEN2 SNP Missense_Mutation 3 12558155 G C 45 58 BRCA TCGA-D8-A13Y MMRN1 SNP Silent 4 90856574 G A 47 49 BRCA TCGA-D8-A13Y SLCO4C1 SNP Missense_Mutation 5 101631639 G A 45 52 BRCA TCGA-D8-A13Y SLC12A7 SNP Missense_Mutation 5 1075597 G C 41 92 BRCA TCGA-D8-A13Y PCDHA5 SNP Missense_Mutation 5 140203381 C T 27 54 BRCA TCGA-D8-A13Y FAM105B SNP Silent 5 14687728 A G 3 55 BRCA TCGA-D8-A13Y ATP10B SNP Missense_Mutation 5 160047807 C T 19 29 BRCA TCGA-D8-A13Y ELL2 SNP Missense_Mutation 5 95226942 C G 32 64 BRCA TCGA-D8-A13Y DSE SNP Missense_Mutation 6 116757537 C T 30 99 BRCA TCGA-D8-A13Y TTK SNP Missense_Mutation 6 80746293 A G 2 90 BRCA TCGA-D8-A13Y PLOD3 SNP Missense_Mutation 7 100861229 C G 18 44 BRCA TCGA-D8-A13Y RELN SNP Missense_Mutation 7 103214731 C A 17 95 BRCA TCGA-D8-A13Y PHF14 SNP Silent 7 11022484 C T 28 74 BRCA TCGA-D8-A13Y NOBOX SNP Missense_Mutation 7 144097327 G A 40 51 BRCA TCGA-D8-A13Y SLC25A32 SNP Missense_Mutation 8 104412655 C T 32 60 BRCA TCGA-D8-A13Y KCNQ3 SNP Missense_Mutation 8 133186503 A T 3 89 BRCA TCGA-D8-A13Y PLEC SNP Silent 8 144997236 G A 43 48 BRCA TCGA-D8-A13Y POLB DEL Splice_Site 8 42207581 TGGGTAAGAAC - 63 50 BRCA TCGA-D8-A13Y MMP16 SNP Silent 8 89130939 C T 32 77 BRCA TCGA-D8-A13Y AMBP SNP Missense_Mutation 9 116840414 G C 42 55 BRCA TCGA-D8-A13Y RFX3 SNP Missense_Mutation 9 3293227 G C 46 100 BRCA TCGA-D8-A13Y VPS13A SNP Missense_Mutation 9 79827929 G C 33 68 BRCA TCGA-D8-A13Z MUC1 SNP Missense_Mutation 1 155160204 C A 19 37 BRCA TCGA-D8-A13Z ESRRG SNP Splice_site 1 216896587 C G 32 81 BRCA TCGA-D8-A13Z LUZP1 SNP Missense_Mutation 1 23419915 G C 44 61 BRCA TCGA-D8-A13Z SZT2 SNP Silent 1 43892390 C T 23 51 BRCA TCGA-D8-A13Z ZCCHC11 SNP Missense_Mutation 1 52991318 G A 33 67 BRCA TCGA-D8-A13Z ROR1 SNP Missense_Mutation 1 64624796 C T 31 82 BRCA TCGA-D8-A13Z SVIL SNP Missense_Mutation 10 29775379 T G 56 58 BRCA TCGA-D8-A13Z PTEN INS Frame_Shift_Ins 10 89717742 - G 11 88 BRCA TCGA-D8-A13Z FAM118B SNP Missense_Mutation 11 126110852 T G 51 55 BRCA TCGA-D8-A13Z ST3GAL4 SNP Missense_Mutation 11 126283912 G A 47 15 BRCA TCGA-D8-A13Z PRDM10 SNP Missense_Mutation 11 129827748 C A 18 98 BRCA TCGA-D8-A13Z LDLRAD3 SNP Missense_Mutation 11 36119907 G A 38 91 BRCA TCGA-D8-A13Z OR51A7 SNP Missense_Mutation 11 4928748 A T 3 52 BRCA TCGA-D8-A13Z DAK SNP Missense_Mutation 11 61112999 G C 44 98 BRCA TCGA-D8-A13Z SLC22A11 SNP Missense_Mutation 11 64329577 G A 39 72 BRCA TCGA-D8-A13Z EIF3F SNP Silent 11 8016560 C T 21 58 BRCA TCGA-D8-A13Z ACAD10 SNP Missense_Mutation 12 112153693 C T 31 63 BRCA TCGA-D8-A13Z PSMD9 SNP Missense_Mutation 12 122326782 G A 35 49 BRCA TCGA-D8-A13Z GRIN2B SNP Missense_Mutation 12 13716276 C T 27 81 BRCA TCGA-D8-A13Z GUCY2C SNP Missense_Mutation 12 14804406 C A 23 97 BRCA TCGA-D8-A13Z MLL2 SNP Missense_Mutation 12 49418417 C A 29 84 BRCA TCGA-D8-A13Z ESPL1 SNP Missense_Mutation 12 53680055 C G 21 58 BRCA TCGA-D8-A13Z TARBP2 SNP Nonsense_Mutation 12 53895208 C T 25 63 BRCA TCGA-D8-A13Z LRP1 SNP Silent 12 57569343 C G 23 39 BRCA TCGA-D8-A13Z LRP1 SNP Missense_Mutation 12 57587027 C G 24 72 BRCA TCGA-D8-A13Z XRCC6BP1 SNP Splice_Site 12 58347387 A C 15 89 BRCA TCGA-D8-A13Z TMBIM4 SNP Missense_Mutation 12 66531907 C T 27 82 BRCA TCGA-D8-A13Z TPH2 SNP Silent 12 72338118 G C 42 62 BRCA TCGA-D8-A13Z COG6 SNP Missense_Mutation 13 40253739 C G 17 93 BRCA TCGA-D8-A13Z FBN1 SNP Missense_Mutation 15 48780678 C T 25 100 BRCA TCGA-D8-A13Z MYH11 SNP Silent 16 15931822 G T 45 62 BRCA TCGA-D8-A13Z ABCC1 SNP Missense_Mutation 16 16219730 G A 40 96 BRCA TCGA-D8-A13Z APOBR SNP Missense_Mutation 16 28506761 C G 27 49 BRCA TCGA-D8-A13Z FAM96B SNP Missense_Mutation 16 66966114 G A 39 65 BRCA TCGA-D8-A13Z PHLPP2 SNP Missense_Mutation 16 71683709 C T 28 100 BRCA TCGA-D8-A13Z ATXN1L SNP Missense_Mutation 16 71884325 C G 26 82 BRCA TCGA-D8-A13Z PIPOX SNP Missense_Mutation 17 27380441 G A 37 58 BRCA TCGA-D8-A13Z KRT17 SNP Missense_Mutation 17 39780482 G A 39 86 BRCA TCGA-D8-A13Z KIAA0195 SNP Missense_Mutation 17 73486391 G T 40 80 BRCA TCGA-D8-A13Z TP53 SNP Missense_Mutation 17 7578508 C T 25 82 BRCA TCGA-D8-A13Z DDX39A SNP Nonsense_Mutation 19 14523994 G T 40 38 BRCA TCGA-D8-A13Z ZNF526 SNP Missense_Mutation 19 42729694 G A 39 66 BRCA TCGA-D8-A13Z PLIN4 SNP Missense_Mutation 19 4508835 T A 59 71 BRCA TCGA-D8-A13Z TSKS SNP Missense_Mutation 19 50245191 C T 26 73 BRCA TCGA-D8-A13Z ZNRF4 SNP Missense_Mutation 19 5456398 T A 58 54 BRCA TCGA-D8-A13Z NLRP7 SNP Silent 19 55447631 C G 29 45 BRCA TCGA-D8-A13Z ZNF551 SNP Missense_Mutation 19 58199532 T G 56 68 BRCA TCGA-D8-A13Z INSR SNP Missense_Mutation 19 7267521 T C 49 87 BRCA TCGA-D8-A13Z FSIP2 INS In_Frame_Ins 2 186671458 - AAGATA 17 47 BRCA TCGA-D8-A13Z RAB17 SNP Silent 2 238484088 C T 17 57 BRCA TCGA-D8-A13Z C2orf16 DEL In_Frame_Del 2 27801199 TTG - 52 52 BRCA TCGA-D8-A13Z COL18A1 SNP Splice_site 21 46911228 C T 19 31 BRCA TCGA-D8-A13Z AKAP17A SNP Silent 23 1712955 G A 39 47 BRCA TCGA-D8-A13Z FAM48B2 SNP Missense_Mutation 23 24331338 G A 38 51 BRCA TCGA-D8-A13Z MAP3K13 SNP Nonsense_Mutation 3 185191457 G T 45 64 BRCA TCGA-D8-A13Z FYCO1 INS Splice_Site 3 46026346 - CC 14 86 BRCA TCGA-D8-A13Z COL25A1 SNP Missense_Mutation 4 110221778 T G 52 64 BRCA TCGA-D8-A13Z SLC6A18 SNP Missense_Mutation 5 1239601 G A 38 95 BRCA TCGA-D8-A13Z KIAA0141 DEL Frame_Shift_Del 5 141307719 ACTCTGG - 6 57 BRCA TCGA-D8-A13Z ODZ2 SNP Silent 5 167674943 C A 22 49 BRCA TCGA-D8-A13Z ZFR SNP Missense_Mutation 5 32356003 G C 33 68 BRCA TCGA-D8-A13Z OSMR SNP Missense_Mutation 5 38918971 G C 33 53 BRCA TCGA-D8-A13Z RICTOR SNP Missense_Mutation 5 39021230 C T 29 93 BRCA TCGA-D8-A13Z NKAIN2 SNP Missense_Mutation 6 124979382 G T 41 98 BRCA TCGA-D8-A13Z LAMA2 SNP Missense_Mutation 6 129807718 C A 32 55 BRCA TCGA-D8-A13Z SENP6 SNP Silent 6 76380373 C A 29 61 BRCA TCGA-D8-A13Z SLC35A1 SNP Missense_Mutation 6 88218170 G C 33 99 BRCA TCGA-D8-A13Z FERD3L SNP Missense_Mutation 7 19184661 G A 39 70 BRCA TCGA-D8-A13Z PHF20L1 SNP Missense_Mutation 8 133849997 G A 43 99 BRCA TCGA-D8-A13Z RAPGEF1 DEL In_Frame_Del 9 134503455 CTCTGTGCG - 24 95 BRCA TCGA-D8-A140 PRAMEF11 SNP Missense_Mutation 1 12887609 C T 22 28 BRCA TCGA-D8-A140 ANP32E SNP Missense_Mutation 1 150204143 C T 23 53 BRCA TCGA-D8-A140 CD5L SNP Missense_Mutation 1 157805906 C T 27 61 BRCA TCGA-D8-A140 MAEL SNP Missense_Mutation 1 166974325 A G 2 54 BRCA TCGA-D8-A140 PQLC2 SNP Splice_Site 1 19653907 G A 40 81 BRCA TCGA-D8-A140 ZNF281 SNP Missense_Mutation 1 200378223 T A 50 61 BRCA TCGA-D8-A140 SLC26A9 SNP Missense_Mutation 1 205897095 C T 19 93 BRCA TCGA-D8-A140 OBSCN SNP Missense_Mutation 1 228521466 C T 23 57 BRCA TCGA-D8-A140 OBSCN INS Frame_Shift_Ins 1 228537694 - T 36 61 BRCA TCGA-D8-A140 ZP4 SNP Nonsense_Mutation 1 238051691 C A 29 55 BRCA TCGA-D8-A140 HS2ST1 SNP Missense_Mutation 1 87380793 T G 54 88 BRCA TCGA-D8-A140 PPAPDC1A SNP Nonsense_Mutation 10 122278379 C A 25 84 BRCA TCGA-D8-A140 KNDC1 SNP Silent 10 135020748 C T 24 51 BRCA TCGA-D8-A140 MLLT10 SNP Missense_Mutation 10 22016847 C T 32 76 BRCA TCGA-D8-A140 ANK3 SNP Missense_Mutation 10 61819102 C T 29 69 BRCA TCGA-D8-A140 VPS26A SNP Missense_Mutation 10 70892783 G A 39 100 BRCA TCGA-D8-A140 OR5AS1 SNP Silent 11 55798416 C T 29 52 BRCA TCGA-D8-A140 SLC22A25 SNP Missense_Mutation 11 62996956 C A 29 51 BRCA TCGA-D8-A140 RAB30 SNP Missense_Mutation 11 82708280 G C 39 100 BRCA TCGA-D8-A140 SRSF9 SNP Missense_Mutation 12 120899883 C T 19 81 BRCA TCGA-D8-A140 RAN DEL Frame_Shift_Del 12 131359172 G - 37 80 BRCA TCGA-D8-A140 YARS2 SNP Silent 12 32908185 G A 45 47 BRCA TCGA-D8-A140 KRT76 SNP Silent 12 53167402 G A 46 49 BRCA TCGA-D8-A140 KRT18 SNP Silent 12 53344579 C A 30 53 BRCA TCGA-D8-A140 PDE1B SNP Missense_Mutation 12 54943667 C T 30 71 BRCA TCGA-D8-A140 NUP107 SNP Missense_Mutation 12 69082816 C G 28 81 BRCA TCGA-D8-A140 GPR162 SNP Missense_Mutation 12 6936007 G A 41 62 BRCA TCGA-D8-A140 TMTC4 SNP Missense_Mutation 13 101278346 C T 32 59 BRCA TCGA-D8-A140 DAOA SNP Missense_Mutation 13 106142353 A G 4 54 BRCA TCGA-D8-A140 CLDN10 SNP Silent 13 96086159 G A 40 46 BRCA TCGA-D8-A140 DOCK9 SNP Silent 13 99461377 C T 23 92 BRCA TCGA-D8-A140 NPAS3 SNP Missense_Mutation 14 34269516 C T 23 84 BRCA TCGA-D8-A140 PLEKHG3 SNP Missense_Mutation 14 65208367 C T 18 65 BRCA TCGA-D8-A140 KCNK13 SNP Nonsense_Mutation 14 90650490 A T 1 91 BRCA TCGA-D8-A140 SLC12A6 SNP Missense_Mutation 15 34530451 G C 41 69 BRCA TCGA-D8-A140 C15orf52 INS Frame_Shift_Ins 15 40627656 - A 18 51 BRCA TCGA-D8-A140 STARD9 SNP Silent 15 42984495 G A 37 20 BRCA TCGA-D8-A140 PEAK1 SNP Missense_Mutation 15 77474189 T C 59 92 BRCA TCGA-D8-A140 MFGE8 SNP Missense_Mutation 15 89449997 G A 38 59 BRCA TCGA-D8-A140 ANPEP SNP Missense_Mutation 15 90328653 G A 40 82 BRCA TCGA-D8-A140 LOC401847 SNP Missense_Mutation 16 33605741 G C 43 51 BRCA TCGA-D8-A140 ZNF75A SNP Missense_Mutation 16 3366955 G T 34 53 BRCA TCGA-D8-A140 GRIN2A SNP Missense_Mutation 16 9934570 C A 17 98 BRCA TCGA-D8-A140 COPS3 SNP Missense_Mutation 17 17163754 A G 6 78 BRCA TCGA-D8-A140 ALKBH5 SNP Missense_Mutation 17 18088015 A G 11 89 BRCA TCGA-D8-A140 ULK2 SNP Silent 17 19685246 C T 32 66 BRCA TCGA-D8-A140 STAC2 SNP Missense_Mutation 17 37371076 G T 42 54 BRCA TCGA-D8-A140 SMARCA4 SNP Silent 19 11113752 C T 30 82 BRCA TCGA-D8-A140 NACC1 SNP Silent 19 13248140 C T 25 60 BRCA TCGA-D8-A140 ZFR2 SNP Splice_site 19 3834981 G A 38 54 BRCA TCGA-D8-A140 RYR1 SNP Silent 19 38993592 C T 31 49 BRCA TCGA-D8-A140 SIGLEC7 SNP Missense_Mutation 19 51647840 T G 54 55 BRCA TCGA-D8-A140 ZNF347 SNP Nonsense_Mutation 19 53645625 G T 48 48 BRCA TCGA-D8-A140 SLC20A1 SNP Missense_Mutation 2 113404906 G T 46 84 BRCA TCGA-D8-A140 AAK1 SNP Missense_Mutation 2 69870081 C T 26 89 BRCA TCGA-D8-A140 FER1L5 SNP Nonsense_Mutation 2 97313550 T A 63 70 BRCA TCGA-D8-A140 NCOA3 SNP Missense_Mutation 20 46281213 C T 31 97 BRCA TCGA-D8-A140 ADARB1 SNP Silent 21 46596033 G A 45 82 BRCA TCGA-D8-A140 SLC25A53 SNP Missense_Mutation 23 103349790 C T 18 58 BRCA TCGA-D8-A140 CXorf57 SNP Nonsense_Mutation 23 105855830 C T 21 45 BRCA TCGA-D8-A140 IRS4 SNP Missense_Mutation 23 107978764 C T 31 83 BRCA TCGA-D8-A140 GRIPAP1 SNP Silent 23 48831588 G A 47 72 BRCA TCGA-D8-A140 NUDT10 SNP Missense_Mutation 23 51076061 G A 40 48 BRCA TCGA-D8-A140 PFKFB1 SNP Silent 23 54978380 G A 42 54 BRCA TCGA-D8-A140 DLG3 SNP Missense_Mutation 23 69717042 C A 30 92 BRCA TCGA-D8-A140 PHKA1 SNP Silent 23 71823050 G A 35 72 BRCA TCGA-D8-A140 KIAA2022 SNP Missense_Mutation 23 73964215 C T 17 50 BRCA TCGA-D8-A140 SEC13 SNP Nonsense_Mutation 3 10354321 C T 30 93 BRCA TCGA-D8-A140 SEC61A1 SNP Missense_Mutation 3 127788327 C T 22 100 BRCA TCGA-D8-A140 ITPR1 SNP Nonsense_Mutation 3 4699856 G T 33 96 BRCA TCGA-D8-A140 FRMD4B SNP Missense_Mutation 3 69244205 T G 63 90 BRCA TCGA-D8-A140 HELT SNP Missense_Mutation 4 185940105 G T 38 76 BRCA TCGA-D8-A140 GK2 SNP Silent 4 80327945 G A 38 30 BRCA TCGA-D8-A140 MAN2A1 SNP Missense_Mutation 5 109091068 G T 42 95 BRCA TCGA-D8-A140 GRM6 SNP Silent 5 178410025 G A 38 15 BRCA TCGA-D8-A140 FCHO2 SNP Missense_Mutation 5 72330517 G T 36 76 BRCA TCGA-D8-A140 ARHGEF28 SNP Missense_Mutation 5 73178396 A G 13 93 BRCA TCGA-D8-A140 GPR126 SNP Missense_Mutation 6 142711398 G A 41 80 BRCA TCGA-D8-A140 TIAM2 SNP Silent 6 155561720 C T 25 54 BRCA TCGA-D8-A140 GRM4 SNP Missense_Mutation 6 34004103 G A 42 98 BRCA TCGA-D8-A140 SLC35B2 SNP Missense_Mutation 6 44224176 G T 42 83 BRCA TCGA-D8-A140 TSGA13 SNP Missense_Mutation 7 130357595 G A 41 60 BRCA TCGA-D8-A140 AUTS2 SNP Silent 7 70255691 G A 34 63 BRCA TCGA-D8-A140 MAGI2 SNP Missense_Mutation 7 77789453 C T 27 59 BRCA TCGA-D8-A140 AZIN1 SNP Missense_Mutation 8 103841546 C T 29 70 BRCA TCGA-D8-A140 BLK SNP Missense_Mutation 8 11418950 C T 19 66 BRCA TCGA-D8-A140 RP1 SNP Missense_Mutation 8 55537248 C T 29 67 BRCA TCGA-D8-A140 FKBP15 SNP Missense_Mutation 9 115964882 A G 13 86 BRCA TCGA-D8-A140 RC3H2 SNP Missense_Mutation 9 125621114 T C 57 86 BRCA TCGA-D8-A140 CRB2 SNP Missense_Mutation 9 126125420 G A 38 43 BRCA TCGA-D8-A140 FAM166A INS Frame_Shift_Ins 9 140142146 - G 31 41 BRCA TCGA-D8-A141 KCNK2 SNP Missense_Mutation 1 215408369 C T 21 86 BRCA TCGA-D8-A141 TRIM11 SNP Missense_Mutation 1 228582831 C T 23 72 BRCA TCGA-D8-A141 THNSL1 SNP Missense_Mutation 10 25313006 G T 41 61 BRCA TCGA-D8-A141 TRHDE SNP Missense_Mutation 12 72956762 C G 17 78 BRCA TCGA-D8-A141 NEK3 DEL Frame_Shift_Del 13 52726763 T - 59 78 BRCA TCGA-D8-A141 AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-D8-A141 SLC46A1 SNP Missense_Mutation 17 26732105 G A 39 53 BRCA TCGA-D8-A141 GP1BA SNP Missense_Mutation 17 4837701 C G 31 51 BRCA TCGA-D8-A141 CAMSAP3 SNP Missense_Mutation 19 7682810 C T 31 83 BRCA TCGA-D8-A141 EIF2AK3 SNP Silent 2 88885398 C A 19 44 BRCA TCGA-D8-A141 RUNX1 SNP Splice_Site 21 36252853 C G 18 100 BRCA TCGA-D8-A141 TLR8 SNP Missense_Mutation 23 12937272 A G 11 55 BRCA TCGA-D8-A141 GPKOW SNP Missense_Mutation 23 48978773 G T 46 53 BRCA TCGA-D8-A141 ZMYM3 SNP Missense_Mutation 23 70461089 T C 49 87 BRCA TCGA-D8-A141 HIST1H2AE SNP Silent 6 26217367 G A 46 63 BRCA TCGA-D8-A141 TRERF1 SNP Silent 6 42227276 C T 27 47 BRCA TCGA-D8-A141 COBL SNP Missense_Mutation 7 51095504 G T 44 86 BRCA TCGA-D8-A142 LENEP SNP Missense_Mutation 1 154966145 G A 37 43 BRCA TCGA-D8-A142 FDPS SNP Silent 1 155290277 G A 48 37 BRCA TCGA-D8-A142 ZBTB41 SNP Missense_Mutation 1 197169544 T G 56 56 BRCA TCGA-D8-A142 INTS7 SNP Missense_Mutation 1 212148707 T C 51 94 BRCA TCGA-D8-A142 LRRC7 SNP Silent 1 70446130 A G 14 50 BRCA TCGA-D8-A142 LRRC40 SNP Missense_Mutation 1 70641557 G A 41 94 BRCA TCGA-D8-A142 FAM21A SNP Missense_Mutation 10 51827934 G A 44 60 BRCA TCGA-D8-A142 ENTPD1 SNP Splice_Site 10 97602252 G A 44 91 BRCA TCGA-D8-A142 MUC5B DEL Frame_Shift_Del 11 1269544 A - 10 44 BRCA TCGA-D8-A142 DEPDC4 SNP Missense_Mutation 12 100660730 C G 19 48 BRCA TCGA-D8-A142 ATP6V0A2 SNP Silent 12 124241429 C T 32 74 BRCA TCGA-D8-A142 NINJ2 SNP Silent 12 675138 G A 37 43 BRCA TCGA-D8-A142 KERA SNP Silent 12 91449597 C T 17 52 BRCA TCGA-D8-A142 AHNAK2 SNP Missense_Mutation 14 105417688 A G 8 53 BRCA TCGA-D8-A142 FSD2 SNP Missense_Mutation 15 83437686 G A 37 92 BRCA TCGA-D8-A142 NTHL1 SNP Missense_Mutation 16 2096293 C T 30 66 BRCA TCGA-D8-A142 C16orf96 DEL Frame_Shift_Del 16 4626490 C - 18 64 BRCA TCGA-D8-A142 ABAT SNP Silent 16 8862091 C T 27 49 BRCA TCGA-D8-A142 TAOK1 SNP Missense_Mutation 17 27805320 C G 28 100 BRCA TCGA-D8-A142 SPNS3 SNP Silent 17 4389850 C T 19 79 BRCA TCGA-D8-A142 APOH SNP Splice_Site 17 64219815 C T 19 74 BRCA TCGA-D8-A142 TP53 SNP Missense_Mutation 17 7577106 G C 41 95 BRCA TCGA-D8-A142 PTGER1 SNP Missense_Mutation 19 14583533 C T 18 78 BRCA TCGA-D8-A142 CYP4F11 SNP Missense_Mutation 19 16035659 C T 27 48 BRCA TCGA-D8-A142 ZNF429 SNP Missense_Mutation 19 21720707 G C 33 70 BRCA TCGA-D8-A142 PSMC4 SNP Missense_Mutation 19 40487109 T C 63 85 BRCA TCGA-D8-A142 SIGLEC12 SNP Missense_Mutation 19 52001438 C A 30 51 BRCA TCGA-D8-A142 SNTG2 SNP Silent 2 1271265 C T 19 30 BRCA TCGA-D8-A142 ABCB11 SNP Missense_Mutation 2 169826581 C A 28 86 BRCA TCGA-D8-A142 TTN SNP Missense_Mutation 2 179396209 C G 32 100 BRCA TCGA-D8-A142 TTN SNP Missense_Mutation 2 179569129 C G 25 56 BRCA TCGA-D8-A142 WDR75 SNP Missense_Mutation 2 190327230 G A 39 97 BRCA TCGA-D8-A142 ENSG00000196758 SNP Missense_Mutation 2 240500438 G A 40 53 BRCA TCGA-D8-A142 NDUFA10 DEL In_Frame_Del 2 240954240 GAT - 33 53 BRCA TCGA-D8-A142 YWHAB SNP Missense_Mutation 20 43530358 C T 27 100 BRCA TCGA-D8-A142 RCAN1 SNP Silent 21 35890532 T G 55 42 BRCA TCGA-D8-A142 SLC5A4 SNP Silent 22 32614516 G A 40 50 BRCA TCGA-D8-A142 GRIA3 SNP Missense_Mutation 23 122598837 C A 26 95 BRCA TCGA-D8-A142 FRMPD4 SNP Missense_Mutation 23 12704307 G T 46 73 BRCA TCGA-D8-A142 FAM58A SNP Nonsense_Mutation 23 152860089 C T 22 94 BRCA TCGA-D8-A142 AWAT1 SNP Missense_Mutation 23 69456923 G C 34 62 BRCA TCGA-D8-A142 DPPA2 SNP Silent 3 109027096 C G 31 34 BRCA TCGA-D8-A142 C3orf19 SNP Silent 3 14708387 G A 35 47 BRCA TCGA-D8-A142 FGD5 SNP Missense_Mutation 3 14862067 G A 40 95 BRCA TCGA-D8-A142 ACTR8 SNP Silent 3 53908256 A C 3 41 BRCA TCGA-D8-A142 OTUD4 SNP Silent 4 146064523 C T 23 51 BRCA TCGA-D8-A142 GRIA2 SNP Missense_Mutation 4 158282695 C T 21 100 BRCA TCGA-D8-A142 GALNT7 SNP Silent 4 174223291 T C 59 60 BRCA TCGA-D8-A142 ZBTB49 SNP Missense_Mutation 4 4314784 C G 20 91 BRCA TCGA-D8-A142 ETF1 SNP Nonsense_Mutation 5 137844062 G A 39 76 BRCA TCGA-D8-A142 LOC100288105 SNP Silent 5 140242970 G A 40 45 BRCA TCGA-D8-A142 CDH12 SNP Missense_Mutation 5 21752184 C A 20 96 BRCA TCGA-D8-A142 MTMR12 SNP Missense_Mutation 5 32233991 A C 6 90 BRCA TCGA-D8-A142 CDK19 SNP Missense_Mutation 6 110942402 C G 30 100 BRCA TCGA-D8-A142 NKAIN2 SNP Missense_Mutation 6 124676437 G A 44 64 BRCA TCGA-D8-A142 MYB SNP Missense_Mutation 6 135520049 T G 56 68 BRCA TCGA-D8-A142 SHPRH SNP Missense_Mutation 6 146276440 G C 40 81 BRCA TCGA-D8-A142 ZNF192 SNP Missense_Mutation 6 28120996 G A 39 55 BRCA TCGA-D8-A142 KLC4 SNP Missense_Mutation 6 43029294 C T 32 99 BRCA TCGA-D8-A142 MEP1A SNP Missense_Mutation 6 46787380 C A 19 47 BRCA TCGA-D8-A142 LGSN SNP Silent 6 63989962 A T 7 49 BRCA TCGA-D8-A142 KIAA1009 SNP Missense_Mutation 6 84904772 C T 20 49 BRCA TCGA-D8-A142 HDAC9 SNP Splice_Site 7 18833076 G T 44 86 BRCA TCGA-D8-A142 GLI3 SNP Silent 7 42005086 G A 40 52 BRCA TCGA-D8-A142 ARPC1B SNP Silent 7 98988555 G A 39 43 BRCA TCGA-D8-A142 ZHX1 SNP Missense_Mutation 8 124266845 G A 41 70 BRCA TCGA-D8-A142 SCARA3 SNP Missense_Mutation 8 27516828 G A 40 98 BRCA TCGA-D8-A142 UNC5D SNP Silent 8 35631900 C A 24 64 BRCA TCGA-D8-A142 FGFR1 SNP Silent 8 38275446 G A 37 31 BRCA TCGA-D8-A142 SDR16C6 SNP Missense_Mutation 8 57307803 G T 48 74 BRCA TCGA-D8-A142 CACNA1B SNP Silent 9 140901245 A T 7 32 BRCA TCGA-D8-A143 FAM40A INS Splice_site 1 110590491 - GTGA 23 96 BRCA TCGA-D8-A143 ADORA3 SNP Missense_Mutation 1 112031583 C T 25 75 BRCA TCGA-D8-A143 C1orf114 SNP Missense_Mutation 1 169364427 C T 23 58 BRCA TCGA-D8-A143 RGSL1 SNP Missense_Mutation 1 182517904 G A 40 49 BRCA TCGA-D8-A143 PRG4 SNP Silent 1 186277245 C A 22 49 BRCA TCGA-D8-A143 OBSCN SNP Missense_Mutation 1 228556454 G T 39 69 BRCA TCGA-D8-A143 KIF26B SNP Missense_Mutation 1 245772787 C T 30 100 BRCA TCGA-D8-A143 CAP1 SNP Missense_Mutation 1 40530205 C G 18 64 BRCA TCGA-D8-A143 BMS1 SNP Missense_Mutation 10 43326387 T A 55 61 BRCA TCGA-D8-A143 BICC1 SNP Missense_Mutation 10 60560727 A T 12 78 BRCA TCGA-D8-A143 TTC18 SNP Missense_Mutation 10 75114545 C G 20 45 BRCA TCGA-D8-A143 OR2AG2 SNP Missense_Mutation 11 6789772 T A 54 41 BRCA TCGA-D8-A143 UBC SNP Missense_Mutation 12 125397945 G C 46 93 BRCA TCGA-D8-A143 GPR133 SNP Nonsense_Mutation 12 131488811 C T 21 51 BRCA TCGA-D8-A143 RB1 INS Frame_Shift_Ins 13 49033889 - TAGAACA 52 69 BRCA TCGA-D8-A143 IREB2 SNP Missense_Mutation 15 78768612 C G 20 100 BRCA TCGA-D8-A143 CALB2 DEL In_Frame_Del 16 71408680 GAA - 45 96 BRCA TCGA-D8-A143 MYH13 SNP Missense_Mutation 17 10219317 G A 40 75 BRCA TCGA-D8-A143 C17orf64 SNP Missense_Mutation 17 58503620 C A 26 64 BRCA TCGA-D8-A143 FDXR SNP Missense_Mutation 17 72860220 G C 39 53 BRCA TCGA-D8-A143 TP53 SNP Splice_Site 17 7576851 A C 14 69 BRCA TCGA-D8-A143 MAST1 SNP Missense_Mutation 19 12980054 C A 26 94 BRCA TCGA-D8-A143 ATP13A1 SNP Silent 19 19766177 G T 47 65 BRCA TCGA-D8-A143 LOC100289119 SNP Silent 19 36297501 A G 16 53 BRCA TCGA-D8-A143 PRX SNP Missense_Mutation 19 40901124 C A 21 48 BRCA TCGA-D8-A143 ZNF841 SNP Missense_Mutation 19 52569631 C T 20 31 BRCA TCGA-D8-A143 LRP1B SNP Missense_Mutation 2 141130589 T G 56 64 BRCA TCGA-D8-A143 APOB DEL In_Frame_Del 2 21228741 CTT - 24 98 BRCA TCGA-D8-A143 MYH7B SNP Missense_Mutation 20 33577577 G T 46 98 BRCA TCGA-D8-A143 DSCAM SNP Missense_Mutation 21 41559154 C G 32 100 BRCA TCGA-D8-A143 PHF16 SNP Silent 23 46887478 T C 59 78 BRCA TCGA-D8-A143 USP27X SNP Missense_Mutation 23 49645348 A T 14 51 BRCA TCGA-D8-A143 AKAP4 SNP Missense_Mutation 23 49958079 G A 38 71 BRCA TCGA-D8-A143 C3orf52 SNP Missense_Mutation 3 111831902 G T 44 78 BRCA TCGA-D8-A143 FGD5 SNP Missense_Mutation 3 14860967 C T 27 28 BRCA TCGA-D8-A143 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-D8-A143 NAA15 SNP Silent 4 140280938 G A 35 52 BRCA TCGA-D8-A143 BMP2K SNP Nonsense_Mutation 4 79832817 C A 29 96 BRCA TCGA-D8-A143 PCDHA13 SNP Missense_Mutation 5 140263636 C T 27 53 BRCA TCGA-D8-A143 TINAG SNP Missense_Mutation 6 54214608 C T 19 54 BRCA TCGA-D8-A143 MUC12 DEL Frame_Shift_Del 7 100642025 CA - 21 42 BRCA TCGA-D8-A143 THSD7A SNP Missense_Mutation 7 11464427 G T 36 70 BRCA TCGA-D8-A145 GDAP2 SNP Missense_Mutation 1 118426246 G C 33 73 BRCA TCGA-D8-A145 KCNJ10 SNP Missense_Mutation 1 160012273 C G 28 68 BRCA TCGA-D8-A145 FMO2 SNP Missense_Mutation 1 171154975 G C 41 98 BRCA TCGA-D8-A145 CEP170 DEL Frame_Shift_Del 1 243319545 C - 25 93 BRCA TCGA-D8-A145 OR8H1 SNP Missense_Mutation 11 56058345 T C 59 57 BRCA TCGA-D8-A145 IFLTD1 SNP Missense_Mutation 12 25671812 A G 4 50 BRCA TCGA-D8-A145 UNC45A SNP Missense_Mutation 15 91496469 C T 27 58 BRCA TCGA-D8-A145 CHD9 SNP Missense_Mutation 16 53243700 A G 13 77 BRCA TCGA-D8-A145 RNF213 SNP Silent 17 78264525 C T 21 52 BRCA TCGA-D8-A145 PFAS SNP Missense_Mutation 17 8161431 G A 39 92 BRCA TCGA-D8-A145 LAMA3 SNP Missense_Mutation 18 21485570 C A 17 54 BRCA TCGA-D8-A145 MAPK4 SNP Silent 18 48256050 C T 19 51 BRCA TCGA-D8-A145 ATP13A1 SNP Silent 19 19762519 G A 35 65 BRCA TCGA-D8-A145 NEB SNP Missense_Mutation 2 152425880 A C 13 91 BRCA TCGA-D8-A145 ARPC2 SNP Missense_Mutation 2 219114602 G A 38 100 BRCA TCGA-D8-A145 BCL2L1 SNP Silent 20 30309575 T A 59 47 BRCA TCGA-D8-A145 TSHZ2 SNP Missense_Mutation 20 51870353 A G 6 64 BRCA TCGA-D8-A145 CECR2 SNP Missense_Mutation 22 18022239 C T 31 73 BRCA TCGA-D8-A145 WWC3 DEL Frame_Shift_Del 23 10035453 A - 7 87 BRCA TCGA-D8-A145 PHF8 SNP Splice_site 23 54028588 C T 23 94 BRCA TCGA-D8-A145 SATL1 SNP Silent 23 84348197 T C 61 60 BRCA TCGA-D8-A145 ATP13A5 SNP Missense_Mutation 3 193039554 C T 27 51 BRCA TCGA-D8-A145 LRRC33 SNP Missense_Mutation 3 196387275 C T 19 53 BRCA TCGA-D8-A145 CX3CR1 SNP Missense_Mutation 3 39307802 C G 31 84 BRCA TCGA-D8-A145 DNAH1 SNP Missense_Mutation 3 52420266 G A 46 80 BRCA TCGA-D8-A145 SEC24B SNP Silent 4 110454805 T G 63 46 BRCA TCGA-D8-A145 MCC SNP Missense_Mutation 5 112363013 C T 29 91 BRCA TCGA-D8-A145 NUP155 SNP Missense_Mutation 5 37327737 A T 12 85 BRCA TCGA-D8-A145 CCND3 SNP Missense_Mutation 6 41908208 A T 10 68 BRCA TCGA-D8-A145 LIMK1 SNP Missense_Mutation 7 73535516 A C 6 82 BRCA TCGA-D8-A146 TNN SNP Silent 1 175067535 C T 18 53 BRCA TCGA-D8-A146 SFXN4 SNP Nonsense_Mutation 10 120917220 A C 13 73 BRCA TCGA-D8-A146 LRRTM3 SNP Missense_Mutation 10 68687255 G A 37 98 BRCA TCGA-D8-A146 FAM22B SNP Missense_Mutation 10 81466181 C T 26 47 BRCA TCGA-D8-A146 CELF1 SNP Silent 11 47498507 C A 18 55 BRCA TCGA-D8-A146 PITPNM1 SNP Missense_Mutation 11 67264729 G A 38 72 BRCA TCGA-D8-A146 USP15 SNP Silent 12 62786084 A G 2 59 BRCA TCGA-D8-A146 COG3 SNP Missense_Mutation 13 46054421 A G 9 88 BRCA TCGA-D8-A146 DNAH3 SNP Missense_Mutation 16 20994169 C T 23 87 BRCA TCGA-D8-A146 ACTG1 SNP Missense_Mutation 17 79478289 G C 42 73 BRCA TCGA-D8-A146 RBBP8 DEL Frame_Shift_Del 18 20573334 AATTTAGGCAAGTGACTCTTTATGAGGC - 1 44 BRCA TCGA-D8-A146 ZNF181 SNP Silent 19 35232612 C T 29 50 BRCA TCGA-D8-A146 PPFIA3 SNP Missense_Mutation 19 49643310 G A 37 92 BRCA TCGA-D8-A146 ZNF587 SNP Missense_Mutation 19 58370865 G A 40 35 BRCA TCGA-D8-A146 POTEJ SNP Missense_Mutation 2 131379061 T A 51 49 BRCA TCGA-D8-A146 METTL5 SNP Missense_Mutation 2 170672017 C T 32 97 BRCA TCGA-D8-A146 SCRN3 SNP Missense_Mutation 2 175264705 G A 38 78 BRCA TCGA-D8-A146 UGT1A4 SNP Missense_Mutation 2 234680926 G A 46 76 BRCA TCGA-D8-A146 SLC5A6 SNP Missense_Mutation 2 27430388 A C 11 88 BRCA TCGA-D8-A146 SLC12A5 SNP Missense_Mutation 20 44680375 C T 30 91 BRCA TCGA-D8-A146 ZNFX1 SNP Nonsense_Mutation 20 47863858 C T 18 99 BRCA TCGA-D8-A146 NPTXR SNP Missense_Mutation 22 39218663 C T 18 94 BRCA TCGA-D8-A146 CXorf40B SNP Missense_Mutation 23 149101992 T C 55 61 BRCA TCGA-D8-A146 MAMLD1 SNP Missense_Mutation 23 149638546 C T 28 48 BRCA TCGA-D8-A146 KIAA2022 SNP Missense_Mutation 23 73961112 T C 60 61 BRCA TCGA-D8-A146 COL6A5 SNP Missense_Mutation 3 130145079 C A 25 46 BRCA TCGA-D8-A146 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-D8-A146 ITIH4 SNP Silent 3 52863161 C T 32 69 BRCA TCGA-D8-A146 SOX30 SNP Nonsense_Mutation 5 157073789 G A 40 70 BRCA TCGA-D8-A146 EFCAB9 SNP Missense_Mutation 5 171621224 A C 1 40 BRCA TCGA-D8-A146 FTSJD2 SNP Splice_site 6 37429325 G T 43 99 BRCA TCGA-D8-A146 DSP SNP Missense_Mutation 6 7580379 C T 18 66 BRCA TCGA-D8-A146 PINX1 SNP Missense_Mutation 8 10623423 C T 31 52 BRCA TCGA-D8-A146 EFHA2 DEL Frame_Shift_Del 8 16921636 C - 26 84 BRCA TCGA-D8-A147 INTS3 SNP Missense_Mutation 1 153736642 G A 41 91 BRCA TCGA-D8-A147 TDRD10 SNP Silent 1 154516883 C A 22 53 BRCA TCGA-D8-A147 OR10T2 SNP Missense_Mutation 1 158368709 G T 46 66 BRCA TCGA-D8-A147 DDR2 SNP Missense_Mutation 1 162745606 C A 32 74 BRCA TCGA-D8-A147 SEC16B SNP Missense_Mutation 1 177929979 G A 41 69 BRCA TCGA-D8-A147 NPHS2 SNP Silent 1 179520518 G A 46 51 BRCA TCGA-D8-A147 IGSF21 SNP Missense_Mutation 1 18618477 G T 48 86 BRCA TCGA-D8-A147 CAMSAP2 SNP Missense_Mutation 1 200818901 C G 30 87 BRCA TCGA-D8-A147 LGR6 SNP Silent 1 202287825 G T 47 52 BRCA TCGA-D8-A147 SPRTN SNP Missense_Mutation 1 231488731 C G 32 67 BRCA TCGA-D8-A147 STX12 SNP Missense_Mutation 1 28128254 G T 35 54 BRCA TCGA-D8-A147 CSMD2 SNP Silent 1 34076840 G A 41 51 BRCA TCGA-D8-A147 PDE4B SNP Missense_Mutation 1 66838157 G T 43 46 BRCA TCGA-D8-A147 RABGGTB SNP Missense_Mutation 1 76254953 T A 64 89 BRCA TCGA-D8-A147 IFI44L SNP Missense_Mutation 1 79107183 G C 46 52 BRCA TCGA-D8-A147 ST8SIA6 SNP Missense_Mutation 10 17363189 C A 24 55 BRCA TCGA-D8-A147 MRC1 SNP Missense_Mutation 10 18112248 A G 16 57 BRCA TCGA-D8-A147 ANKRD26 SNP Missense_Mutation 10 27324552 A C 1 50 BRCA TCGA-D8-A147 TET1 SNP Silent 10 70405672 T C 50 51 BRCA TCGA-D8-A147 EXOC6 SNP Missense_Mutation 10 94653185 G A 41 100 BRCA TCGA-D8-A147 DYNC2H1 SNP Missense_Mutation 11 103178535 A T 7 87 BRCA TCGA-D8-A147 ESAM SNP Missense_Mutation 11 124623780 G A 33 84 BRCA TCGA-D8-A147 NELL1 SNP Missense_Mutation 11 21556009 A G 3 69 BRCA TCGA-D8-A147 LGR4 SNP Missense_Mutation 11 27406878 T C 55 79 BRCA TCGA-D8-A147 OR5I1 SNP Missense_Mutation 11 55703108 G A 33 53 BRCA TCGA-D8-A147 TRIM34 SNP Nonsense_Mutation 11 5624731 C G 18 66 BRCA TCGA-D8-A147 PACS1 SNP Silent 11 65983634 C T 17 60 BRCA TCGA-D8-A147 DHCR7 SNP Silent 11 71148981 G A 40 41 BRCA TCGA-D8-A147 SCYL2 SNP Missense_Mutation 12 100729669 G C 33 48 BRCA TCGA-D8-A147 PEBP1 SNP Missense_Mutation 12 118582484 G T 42 83 BRCA TCGA-D8-A147 SLCO1A2 DEL In_Frame_Del 12 21428239 AAT - 1 55 BRCA TCGA-D8-A147 MCRS1 SNP Missense_Mutation 12 49957250 C T 29 98 BRCA TCGA-D8-A147 CD163L1 SNP Missense_Mutation 12 7527924 C G 30 58 BRCA TCGA-D8-A147 CAPS2 SNP Missense_Mutation 12 75716789 G C 45 66 BRCA TCGA-D8-A147 LRRIQ1 SNP Missense_Mutation 12 85546835 T A 52 58 BRCA TCGA-D8-A147 BTBD7 SNP Missense_Mutation 14 93709023 G A 41 83 BRCA TCGA-D8-A147 MTMR10 SNP Silent 15 31239429 G C 39 0 BRCA TCGA-D8-A147 CHRM5 SNP Missense_Mutation 15 34355864 G A 38 51 BRCA TCGA-D8-A147 SPTBN5 SNP Missense_Mutation 15 42144921 C G 32 62 BRCA TCGA-D8-A147 COPS2 SNP Missense_Mutation 15 49420938 G A 34 73 BRCA TCGA-D8-A147 TSC2 SNP Missense_Mutation 16 2112513 A T 9 76 BRCA TCGA-D8-A147 DOC2A SNP Silent 16 30018135 G T 45 73 BRCA TCGA-D8-A147 CKLF SNP Missense_Mutation 16 66592170 A T 3 61 BRCA TCGA-D8-A147 SPG7 SNP Silent 16 89590445 G A 33 71 BRCA TCGA-D8-A147 MYO15A SNP Missense_Mutation 17 18082136 C A 22 57 BRCA TCGA-D8-A147 HEXIM1 SNP Silent 17 43227034 G A 33 75 BRCA TCGA-D8-A147 SPOP SNP Missense_Mutation 17 47688699 C G 32 100 BRCA TCGA-D8-A147 SPAG9 SNP Missense_Mutation 17 49091680 C G 29 88 BRCA TCGA-D8-A147 KCNH6 SNP Missense_Mutation 17 61601567 C G 32 65 BRCA TCGA-D8-A147 SRP68 SNP Missense_Mutation 17 74068454 T C 62 79 BRCA TCGA-D8-A147 TP53 SNP Missense_Mutation 17 7578403 C A 25 84 BRCA TCGA-D8-A147 SETBP1 SNP Missense_Mutation 18 42643634 C G 23 54 BRCA TCGA-D8-A147 PHLPP1 SNP Missense_Mutation 18 60642850 A G 16 54 BRCA TCGA-D8-A147 LPPR2 SNP Silent 19 11468358 A G 11 51 BRCA TCGA-D8-A147 LOC646864 SNP Silent 19 23032019 A T 7 50 BRCA TCGA-D8-A147 ZNF536 SNP Missense_Mutation 19 31039063 C T 24 77 BRCA TCGA-D8-A147 ZNF780A SNP Silent 19 40581287 A G 9 50 BRCA TCGA-D8-A147 CIC SNP Missense_Mutation 19 42794664 G C 34 48 BRCA TCGA-D8-A147 MEGF8 SNP Silent 19 42841097 G T 47 51 BRCA TCGA-D8-A147 SEMA6B SNP Silent 19 4555004 G A 36 64 BRCA TCGA-D8-A147 HIF3A SNP Missense_Mutation 19 46823710 G C 33 75 BRCA TCGA-D8-A147 PEG3 SNP Missense_Mutation 19 57325217 G C 45 53 BRCA TCGA-D8-A147 MYO7B SNP Missense_Mutation 2 128346067 A C 15 39 BRCA TCGA-D8-A147 TTN SNP Missense_Mutation 2 179443774 C G 29 43 BRCA TCGA-D8-A147 DNAH7 SNP Missense_Mutation 2 196912145 G C 41 52 BRCA TCGA-D8-A147 CCDC150 SNP Missense_Mutation 2 197541323 G C 35 67 BRCA TCGA-D8-A147 UNC80 SNP Missense_Mutation 2 210761052 G C 36 100 BRCA TCGA-D8-A147 SPEG DEL Frame_Shift_Del 2 220332106 TACATGAGGACGACAGTGGCGTC - 57 86 BRCA TCGA-D8-A147 ASB1 SNP Missense_Mutation 2 239353225 A C 6 77 BRCA TCGA-D8-A147 TRMT61B SNP Missense_Mutation 2 29092767 G A 37 51 BRCA TCGA-D8-A147 LOXL3 SNP Missense_Mutation 2 74777385 G A 40 65 BRCA TCGA-D8-A147 FER1L5 SNP Missense_Mutation 2 97313519 A G 8 51 BRCA TCGA-D8-A147 BPIFB3 SNP Silent 20 31652642 C T 22 49 BRCA TCGA-D8-A147 WFDC6 SNP Nonsense_Mutation 20 44168036 G T 45 34 BRCA TCGA-D8-A147 CRLS1 SNP Silent 20 6011956 G A 37 55 BRCA TCGA-D8-A147 ZNF512B SNP Missense_Mutation 20 62597959 T A 56 54 BRCA TCGA-D8-A147 TTC3 SNP Missense_Mutation 21 38525425 G A 33 52 BRCA TCGA-D8-A147 MORC2 SNP Missense_Mutation 22 31338115 C G 32 73 BRCA TCGA-D8-A147 A4GALT SNP Nonsense_Mutation 22 43089316 G C 40 42 BRCA TCGA-D8-A147 FBLN1 SNP Missense_Mutation 22 45972921 C A 17 65 BRCA TCGA-D8-A147 CPT1B SNP Splice_site 22 51007768 C T 29 60 BRCA TCGA-D8-A147 ALG13 SNP Missense_Mutation 23 111003141 C G 29 72 BRCA TCGA-D8-A147 KIAA1210 SNP Missense_Mutation 23 118215299 G A 40 51 BRCA TCGA-D8-A147 FRMD7 SNP Nonsense_Mutation 23 131233522 A T 5 74 BRCA TCGA-D8-A147 MAGEC1 SNP Missense_Mutation 23 140993500 G C 45 51 BRCA TCGA-D8-A147 MXRA5 SNP Missense_Mutation 23 3241892 T A 50 50 BRCA TCGA-D8-A147 MAGEE1 SNP Missense_Mutation 23 75649513 C G 24 54 BRCA TCGA-D8-A147 GOLGB1 SNP Missense_Mutation 3 121417739 G T 33 55 BRCA TCGA-D8-A147 KALRN SNP Missense_Mutation 3 123983362 G A 40 76 BRCA TCGA-D8-A147 MUC4 SNP Missense_Mutation 3 195510877 T A 58 55 BRCA TCGA-D8-A147 IQCG SNP Silent 3 197619514 T C 56 52 BRCA TCGA-D8-A147 SCN11A SNP Missense_Mutation 3 38951660 A G 4 26 BRCA TCGA-D8-A147 RBM6 SNP Missense_Mutation 3 50005040 C T 31 77 BRCA TCGA-D8-A147 PPIP5K2 SNP Missense_Mutation 5 102526670 G C 33 70 BRCA TCGA-D8-A147 MARCH6 SNP Silent 5 10410284 G A 46 66 BRCA TCGA-D8-A147 PDLIM7 SNP Missense_Mutation 5 176910945 C G 29 85 BRCA TCGA-D8-A147 GFPT2 SNP Missense_Mutation 5 179744011 A C 12 79 BRCA TCGA-D8-A147 FLT4 SNP Silent 5 180045774 T C 56 48 BRCA TCGA-D8-A147 DMGDH SNP Nonsense_Mutation 5 78328517 G A 45 61 BRCA TCGA-D8-A147 FAM81B SNP Missense_Mutation 5 94784082 T C 51 46 BRCA TCGA-D8-A147 AIM1 SNP Missense_Mutation 6 106967547 G A 33 57 BRCA TCGA-D8-A147 TPD52L1 SNP Missense_Mutation 6 125569511 A G 3 53 BRCA TCGA-D8-A147 LATS1 DEL Frame_Shift_Del 6 149997698 TAGCAACACTT - 57 54 BRCA TCGA-D8-A147 LINC00574 DEL Splice_Site 6 170200923 ACAGCTCCTTCTGGCCG - 6 56 BRCA TCGA-D8-A147 NHLRC1 SNP Missense_Mutation 6 18122300 C A 17 78 BRCA TCGA-D8-A147 HLA-F SNP Missense_Mutation 6 29692892 C G 27 51 BRCA TCGA-D8-A147 IP6K3 SNP Missense_Mutation 6 33703104 G C 33 87 BRCA TCGA-D8-A147 SRPK1 SNP Missense_Mutation 6 35836837 C T 25 100 BRCA TCGA-D8-A147 MTCH1 SNP Missense_Mutation 6 36937843 A G 4 67 BRCA TCGA-D8-A147 FAM135A SNP Missense_Mutation 6 71235917 G T 47 83 BRCA TCGA-D8-A147 BLOC1S5 SNP Missense_Mutation 6 8016001 T G 51 51 BRCA TCGA-D8-A147 SNAP91 SNP Silent 6 84303249 G A 47 82 BRCA TCGA-D8-A147 FBXL4 SNP Missense_Mutation 6 99374449 G C 34 84 BRCA TCGA-D8-A147 CNTNAP2 SNP Missense_Mutation 7 147675016 G C 41 83 BRCA TCGA-D8-A147 GIMAP6 SNP Missense_Mutation 7 150325286 G A 39 55 BRCA TCGA-D8-A147 SNX8 SNP Missense_Mutation 7 2304030 A G 15 76 BRCA TCGA-D8-A147 FAM188B DEL Frame_Shift_Del 7 30825584 TGGGCCCATCGCCAGCTCCCCACAGG - 55 44 BRCA TCGA-D8-A147 CACNA2D1 SNP Missense_Mutation 7 81589141 A T 3 89 BRCA TCGA-D8-A147 TAC1 SNP Silent 7 97361936 C G 31 64 BRCA TCGA-D8-A147 LMTK2 SNP Missense_Mutation 7 97823289 C G 30 79 BRCA TCGA-D8-A147 PKHD1L1 DEL Splice_site 8 110499050 G - 35 91 BRCA TCGA-D8-A147 CSMD3 INS In_Frame_Ins 8 113960102 - TTT 8 67 BRCA TCGA-D8-A147 MYC SNP Missense_Mutation 8 128753130 G A 45 72 BRCA TCGA-D8-A147 NDRG1 SNP Missense_Mutation 8 134260979 C G 30 83 BRCA TCGA-D8-A147 FAM135B SNP Missense_Mutation 8 139268993 C A 27 76 BRCA TCGA-D8-A147 DOCK5 DEL In_Frame_Del 8 25240206 TTTATGAGAACATCA - 64 79 BRCA TCGA-D8-A147 PPP2CB SNP Missense_Mutation 8 30657145 C A 30 96 BRCA TCGA-D8-A147 DEFB1 SNP Missense_Mutation 8 6735372 G T 36 47 BRCA TCGA-D8-A147 SGK223 SNP Missense_Mutation 8 8175701 G A 37 86 BRCA TCGA-D8-A147 KCNS2 SNP Missense_Mutation 8 99440566 G T 34 100 BRCA TCGA-D8-A147 FAM75E1 SNP Missense_Mutation 9 90503051 C A 17 49 BRCA TCGA-D8-A1J9 UBE4B SNP Silent 1 10190626 C G 32 45 BRCA TCGA-D8-A1J9 BCAS2 SNP Missense_Mutation 1 115113352 C G 29 99 BRCA TCGA-D8-A1J9 NUDT17 SNP Silent 1 145588435 C T 32 53 BRCA TCGA-D8-A1J9 BOLA1 SNP Missense_Mutation 1 149871844 G C 37 71 BRCA TCGA-D8-A1J9 UBAP2L SNP Missense_Mutation 1 154241261 C T 30 94 BRCA TCGA-D8-A1J9 FCRL3 SNP Silent 1 157660235 C G 29 38 BRCA TCGA-D8-A1J9 DDR2 SNP Silent 1 162729640 C T 29 60 BRCA TCGA-D8-A1J9 SOAT1 SNP Silent 1 179310328 C A 32 49 BRCA TCGA-D8-A1J9 ARPC5 SNP Silent 1 183599740 G A 45 61 BRCA TCGA-D8-A1J9 GLT25D2 SNP Silent 1 183920242 G A 45 66 BRCA TCGA-D8-A1J9 LHX9 SNP Silent 1 197898203 A G 3 78 BRCA TCGA-D8-A1J9 TRAF5 SNP Missense_Mutation 1 211526585 G C 42 78 BRCA TCGA-D8-A1J9 ADCK3 SNP Silent 1 227149179 C T 25 55 BRCA TCGA-D8-A1J9 URB2 SNP Silent 1 229770771 C T 29 52 BRCA TCGA-D8-A1J9 WDR64 SNP Silent 1 241886720 C G 29 52 BRCA TCGA-D8-A1J9 CNST SNP Missense_Mutation 1 246810526 G C 33 48 BRCA TCGA-D8-A1J9 MACF1 SNP Nonsense_Mutation 1 39824490 C G 29 94 BRCA TCGA-D8-A1J9 ERI3 SNP Silent 1 44820585 C T 31 53 BRCA TCGA-D8-A1J9 MCOLN3 SNP Missense_Mutation 1 85506704 C G 27 65 BRCA TCGA-D8-A1J9 GBP4 SNP Missense_Mutation 1 89651146 C T 32 40 BRCA TCGA-D8-A1J9 HES4 SNP Silent 1 934931 C G 30 55 BRCA TCGA-D8-A1J9 PDCD11 SNP Missense_Mutation 10 105176260 G C 45 65 BRCA TCGA-D8-A1J9 TDRD1 SNP Missense_Mutation 10 115986858 C G 32 82 BRCA TCGA-D8-A1J9 CYP2E1 SNP Missense_Mutation 10 135340993 C G 32 60 BRCA TCGA-D8-A1J9 KIAA0913 SNP Missense_Mutation 10 75557294 C T 29 98 BRCA TCGA-D8-A1J9 CNTN5 SNP Missense_Mutation 11 100061971 C T 31 68 BRCA TCGA-D8-A1J9 ATM SNP Missense_Mutation 11 108124566 G A 33 82 BRCA TCGA-D8-A1J9 CD3G SNP Missense_Mutation 11 118220523 G A 33 14 BRCA TCGA-D8-A1J9 DPF2 SNP Silent 11 65113788 C T 31 59 BRCA TCGA-D8-A1J9 CCDC87 SNP Missense_Mutation 11 66360198 C T 30 65 BRCA TCGA-D8-A1J9 CCS SNP Missense_Mutation 11 66373005 G T 33 98 BRCA TCGA-D8-A1J9 LRTOMT SNP Silent 11 71819713 G A 45 59 BRCA TCGA-D8-A1J9 DEPDC4 SNP Missense_Mutation 12 100657603 C G 30 66 BRCA TCGA-D8-A1J9 ALDH1L2 SNP Missense_Mutation 12 105440687 C G 32 100 BRCA TCGA-D8-A1J9 CLIP1 SNP Silent 12 122825432 G C 33 52 BRCA TCGA-D8-A1J9 GRIN2B SNP Missense_Mutation 12 13716151 C G 29 96 BRCA TCGA-D8-A1J9 ATF7IP SNP Missense_Mutation 12 14614037 G A 33 88 BRCA TCGA-D8-A1J9 PLBD1 SNP Missense_Mutation 12 14688722 C T 29 97 BRCA TCGA-D8-A1J9 SLCO1B3 SNP Missense_Mutation 12 21033899 A T 14 75 BRCA TCGA-D8-A1J9 GALNT8 SNP Missense_Mutation 12 4853841 G T 46 76 BRCA TCGA-D8-A1J9 SCN8A SNP Silent 12 52082602 G A 45 100 BRCA TCGA-D8-A1J9 INF2 SNP Missense_Mutation 14 105175628 G A 41 96 BRCA TCGA-D8-A1J9 NIN SNP Missense_Mutation 14 51219447 G A 45 72 BRCA TCGA-D8-A1J9 NIN SNP Missense_Mutation 14 51233599 G T 37 97 BRCA TCGA-D8-A1J9 PYGL SNP Missense_Mutation 14 51376618 C G 32 61 BRCA TCGA-D8-A1J9 PAPLN SNP Missense_Mutation 14 73729310 C A 25 61 BRCA TCGA-D8-A1J9 CATSPERB SNP Missense_Mutation 14 92083994 C T 29 50 BRCA TCGA-D8-A1J9 APH1B DEL Frame_Shift_Del 15 63569883 TA - 61 84 BRCA TCGA-D8-A1J9 HERC1 SNP Missense_Mutation 15 63958297 C T 29 100 BRCA TCGA-D8-A1J9 BNC1 SNP Missense_Mutation 15 83931995 C T 29 65 BRCA TCGA-D8-A1J9 IFT140 SNP Silent 16 1570261 G A 45 66 BRCA TCGA-D8-A1J9 SLC5A11 SNP Missense_Mutation 16 24921688 C T 21 59 BRCA TCGA-D8-A1J9 NSMCE1 SNP Silent 16 27238062 G A 33 72 BRCA TCGA-D8-A1J9 APOBR SNP Missense_Mutation 16 28507855 G C 33 43 BRCA TCGA-D8-A1J9 TBC1D10B SNP Missense_Mutation 16 30369766 G C 41 68 BRCA TCGA-D8-A1J9 SETD1A SNP Missense_Mutation 16 30976309 G A 37 59 BRCA TCGA-D8-A1J9 CDH16 SNP Nonsense_Mutation 16 66946466 C A 29 69 BRCA TCGA-D8-A1J9 FUK SNP Silent 16 70513502 C T 30 56 BRCA TCGA-D8-A1J9 RFWD3 SNP Missense_Mutation 16 74670451 G C 45 58 BRCA TCGA-D8-A1J9 SDR42E1 SNP Missense_Mutation 16 82033756 G T 41 98 BRCA TCGA-D8-A1J9 CHTF18 SNP Missense_Mutation 16 844160 C A 25 88 BRCA TCGA-D8-A1J9 FANCA SNP Missense_Mutation 16 89882319 C A 31 54 BRCA TCGA-D8-A1J9 GRIN2A SNP Missense_Mutation 16 9934583 G C 33 73 BRCA TCGA-D8-A1J9 CDRT1 SNP Missense_Mutation 17 15508621 C T 31 57 BRCA TCGA-D8-A1J9 GID4 SNP Splice_site 17 17965159 G A 41 99 BRCA TCGA-D8-A1J9 DRG2 SNP Missense_Mutation 17 17997277 C G 32 100 BRCA TCGA-D8-A1J9 SUPT6H SNP Missense_Mutation 17 27000441 G A 37 99 BRCA TCGA-D8-A1J9 RAB11FIP4 SNP Missense_Mutation 17 29761087 G C 41 62 BRCA TCGA-D8-A1J9 ACACA SNP Missense_Mutation 17 35597396 C G 32 71 BRCA TCGA-D8-A1J9 CWC25 SNP Missense_Mutation 17 36966009 C A 32 67 BRCA TCGA-D8-A1J9 GRB7 SNP Missense_Mutation 17 37899229 G C 45 81 BRCA TCGA-D8-A1J9 KRT19 SNP Silent 17 39680718 G A 37 44 BRCA TCGA-D8-A1J9 WNK4 SNP Missense_Mutation 17 40948000 G A 34 86 BRCA TCGA-D8-A1J9 ACSF2 SNP Missense_Mutation 17 48551306 C T 31 64 BRCA TCGA-D8-A1J9 USP6 SNP Nonsense_Mutation 17 5048769 C T 29 84 BRCA TCGA-D8-A1J9 TP53 SNP Missense_Mutation 17 7578413 C A 17 97 BRCA TCGA-D8-A1J9 MAPK4 SNP Silent 18 48255621 G A 38 51 BRCA TCGA-D8-A1J9 ZNF532 SNP Missense_Mutation 18 56587083 G T 48 85 BRCA TCGA-D8-A1J9 ZNF564 SNP Silent 19 12638670 G A 45 62 BRCA TCGA-D8-A1J9 EPHX3 SNP Missense_Mutation 19 15338655 C T 31 87 BRCA TCGA-D8-A1J9 NWD1 SNP Missense_Mutation 19 16860225 C G 29 84 BRCA TCGA-D8-A1J9 USE1 SNP Nonsense_Mutation 19 17330038 C T 21 51 BRCA TCGA-D8-A1J9 JAK3 SNP Missense_Mutation 19 17949174 C G 32 55 BRCA TCGA-D8-A1J9 CYP2A7 SNP Silent 19 41388071 C T 29 50 BRCA TCGA-D8-A1J9 CYP2A13 SNP Silent 19 41595962 C T 29 53 BRCA TCGA-D8-A1J9 PSG4 SNP Splice_site 19 43699148 G A 33 47 BRCA TCGA-D8-A1J9 SLC6A16 SNP Silent 19 49796530 G A 37 56 BRCA TCGA-D8-A1J9 KLK10 SNP Missense_Mutation 19 51518205 C T 29 91 BRCA TCGA-D8-A1J9 SIGLEC6 SNP Silent 19 52032988 G T 33 57 BRCA TCGA-D8-A1J9 LILRB5 SNP Missense_Mutation 19 54760586 G A 37 13 BRCA TCGA-D8-A1J9 ZSCAN5C SNP Nonsense_Mutation 19 56720231 C T 29 50 BRCA TCGA-D8-A1J9 ZNF460 SNP Missense_Mutation 19 57802084 G A 45 35 BRCA TCGA-D8-A1J9 MUC16 SNP Silent 19 8976844 C T 29 56 BRCA TCGA-D8-A1J9 ZNF846 SNP Missense_Mutation 19 9868536 G A 41 48 BRCA TCGA-D8-A1J9 BCL2L11 SNP Missense_Mutation 2 111907684 G C 39 78 BRCA TCGA-D8-A1J9 INHBB SNP Missense_Mutation 2 121106995 G A 41 74 BRCA TCGA-D8-A1J9 GPR39 SNP Silent 2 133402996 C G 32 73 BRCA TCGA-D8-A1J9 THSD7B SNP Missense_Mutation 2 137852504 G A 45 81 BRCA TCGA-D8-A1J9 TNFAIP6 SNP Silent 2 152230093 C A 29 61 BRCA TCGA-D8-A1J9 MARCH7 SNP Missense_Mutation 2 160619400 G C 45 75 BRCA TCGA-D8-A1J9 LY75-CD302 SNP Nonsense_Mutation 2 160667156 G C 45 79 BRCA TCGA-D8-A1J9 XIRP2 SNP Nonsense_Mutation 2 168106216 C T 29 70 BRCA TCGA-D8-A1J9 TTN SNP Missense_Mutation 2 179469849 C T 30 79 BRCA TCGA-D8-A1J9 TTN SNP Missense_Mutation 2 179613383 G C 45 57 BRCA TCGA-D8-A1J9 SUMO1 SNP Nonsense_Mutation 2 203079096 G T 45 100 BRCA TCGA-D8-A1J9 PIKFYVE SNP Missense_Mutation 2 209190674 C G 25 88 BRCA TCGA-D8-A1J9 UNC80 SNP Nonsense_Mutation 2 210782561 C G 29 100 BRCA TCGA-D8-A1J9 ABCB6 SNP Nonsense_Mutation 2 220080803 G C 45 100 BRCA TCGA-D8-A1J9 ABCB6 SNP Missense_Mutation 2 220082409 C A 32 86 BRCA TCGA-D8-A1J9 FAM179A SNP Silent 2 29246027 G A 46 52 BRCA TCGA-D8-A1J9 HEATR5B SNP Silent 2 37284541 G A 45 61 BRCA TCGA-D8-A1J9 MSH2 SNP Missense_Mutation 2 47693816 G C 33 60 BRCA TCGA-D8-A1J9 CCT4 SNP Missense_Mutation 2 62099221 C T 31 100 BRCA TCGA-D8-A1J9 CCT4 SNP Silent 2 62107467 G A 45 58 BRCA TCGA-D8-A1J9 WDPCP SNP Silent 2 63631703 G A 39 61 BRCA TCGA-D8-A1J9 ANKRD36 SNP Missense_Mutation 2 97860646 C A 32 55 BRCA TCGA-D8-A1J9 JAG1 SNP Nonsense_Mutation 20 10639266 G A 45 100 BRCA TCGA-D8-A1J9 NINL SNP Missense_Mutation 20 25436389 C T 32 59 BRCA TCGA-D8-A1J9 NINL SNP Silent 20 25443172 C T 32 57 BRCA TCGA-D8-A1J9 MYH7B SNP Splice_site 20 33586315 G A 43 50 BRCA TCGA-D8-A1J9 ZNF334 SNP Missense_Mutation 20 45131108 C G 32 52 BRCA TCGA-D8-A1J9 SLC2A10 SNP Missense_Mutation 20 45354882 C T 31 49 BRCA TCGA-D8-A1J9 STAU1 SNP Missense_Mutation 20 47768247 G C 45 98 BRCA TCGA-D8-A1J9 SLC9A8 SNP Missense_Mutation 20 48491270 C G 31 48 BRCA TCGA-D8-A1J9 PARD6B SNP Missense_Mutation 20 49366546 G A 45 99 BRCA TCGA-D8-A1J9 KRTAP10-4 SNP Missense_Mutation 21 45994492 C G 32 34 BRCA TCGA-D8-A1J9 GGT1 SNP Silent 22 25023394 G A 39 52 BRCA TCGA-D8-A1J9 HMGXB4 SNP Missense_Mutation 22 35661391 A G 3 45 BRCA TCGA-D8-A1J9 SMC1B SNP Missense_Mutation 22 45785753 G T 45 100 BRCA TCGA-D8-A1J9 TUBGCP6 SNP Silent 22 50665188 C T 29 51 BRCA TCGA-D8-A1J9 HMGB3 SNP Nonsense_Mutation 23 150156319 A T 1 66 BRCA TCGA-D8-A1J9 MAGEA3 SNP Missense_Mutation 23 151935227 C T 32 58 BRCA TCGA-D8-A1J9 BCAP31 SNP Missense_Mutation 23 152986357 G A 33 67 BRCA TCGA-D8-A1J9 SSX6 SNP Missense_Mutation 23 47976517 C T 29 37 BRCA TCGA-D8-A1J9 TSPYL2 SNP Missense_Mutation 23 53115366 G A 45 63 BRCA TCGA-D8-A1J9 C3orf37 SNP Missense_Mutation 3 128998666 G C 41 57 BRCA TCGA-D8-A1J9 C3orf37 SNP Missense_Mutation 3 129007811 G A 45 91 BRCA TCGA-D8-A1J9 GPR149 SNP Missense_Mutation 3 154055753 G C 41 99 BRCA TCGA-D8-A1J9 SLITRK3 SNP Silent 3 164908085 C T 29 49 BRCA TCGA-D8-A1J9 ZBBX SNP Missense_Mutation 3 167051719 C T 30 54 BRCA TCGA-D8-A1J9 MASP1 SNP Silent 3 187009524 C T 32 80 BRCA TCGA-D8-A1J9 STAC SNP Silent 3 36484978 G A 33 52 BRCA TCGA-D8-A1J9 PBRM1 SNP Missense_Mutation 3 52584783 C G 21 82 BRCA TCGA-D8-A1J9 FAM208A SNP Nonsense_Mutation 3 56681156 G A 45 64 BRCA TCGA-D8-A1J9 OR5H14 SNP Silent 3 97868793 T C 56 65 BRCA TCGA-D8-A1J9 HTT SNP Silent 4 3179079 G A 45 55 BRCA TCGA-D8-A1J9 AMBN SNP Missense_Mutation 4 71469607 G C 33 78 BRCA TCGA-D8-A1J9 PARP8 SNP Missense_Mutation 5 50090091 C G 30 77 BRCA TCGA-D8-A1J9 HTR1A SNP Missense_Mutation 5 63256550 G A 38 61 BRCA TCGA-D8-A1J9 MAST4 SNP Missense_Mutation 5 66398395 G A 45 100 BRCA TCGA-D8-A1J9 MARVELD2 SNP Missense_Mutation 5 68728835 C G 32 76 BRCA TCGA-D8-A1J9 GPR98 SNP Nonsense_Mutation 5 89981683 C T 29 100 BRCA TCGA-D8-A1J9 DSE SNP Silent 6 116757740 C A 21 48 BRCA TCGA-D8-A1J9 OR2A4 SNP Silent 6 132022419 G A 40 48 BRCA TCGA-D8-A1J9 TXLNB SNP Missense_Mutation 6 139569014 G C 41 58 BRCA TCGA-D8-A1J9 SYNE1 SNP Silent 6 152847287 G A 40 49 BRCA TCGA-D8-A1J9 KIF13A SNP Missense_Mutation 6 17773736 T C 55 53 BRCA TCGA-D8-A1J9 BTN3A3 SNP Missense_Mutation 6 26452288 G C 33 51 BRCA TCGA-D8-A1J9 HIST1H2AM SNP Silent 6 27860646 G A 45 61 BRCA TCGA-D8-A1J9 DDR1 SNP Silent 6 30864588 C T 30 61 BRCA TCGA-D8-A1J9 PTPRZ1 SNP Missense_Mutation 7 121650745 C G 30 59 BRCA TCGA-D8-A1J9 CALD1 SNP Missense_Mutation 7 134643006 G C 45 95 BRCA TCGA-D8-A1J9 HOXA6 SNP Missense_Mutation 7 27185451 G C 45 60 BRCA TCGA-D8-A1J9 RBAK SNP Missense_Mutation 7 5103430 G C 33 60 BRCA TCGA-D8-A1J9 GTF2IRD2B SNP Missense_Mutation 7 74564242 G C 33 45 BRCA TCGA-D8-A1J9 BAIAP2L1 SNP Missense_Mutation 7 97946565 C T 31 55 BRCA TCGA-D8-A1J9 TPD52 SNP Nonsense_Mutation 8 80956423 G C 45 99 BRCA TCGA-D8-A1J9 MED27 SNP Missense_Mutation 9 134736049 C A 32 82 BRCA TCGA-D8-A1J9 FREM1 SNP Silent 9 14776228 C T 29 92 BRCA TCGA-D8-A1J9 TAF1L SNP Silent 9 32631492 G C 45 50 BRCA TCGA-D8-A1J9 TRPM6 SNP Missense_Mutation 9 77397680 C A 28 54 BRCA TCGA-D8-A1J9 ZCCHC6 SNP Missense_Mutation 9 88916365 G C 45 59 BRCA TCGA-D8-A1J9 ECM2 SNP Missense_Mutation 9 95277329 G A 33 50 BRCA TCGA-D8-A1J9 HIATL2 SNP Missense_Mutation 9 99721158 G C 45 71 BRCA TCGA-D8-A1JB KIF21B SNP Silent 1 200959275 C T 24 66 BRCA TCGA-D8-A1JB FBXO28 SNP Missense_Mutation 1 224345435 G A 39 91 BRCA TCGA-D8-A1JB FAM21C SNP Splice_site 10 46254848 A T 11 68 BRCA TCGA-D8-A1JB THAP2 SNP Missense_Mutation 12 72068026 G T 44 63 BRCA TCGA-D8-A1JB SEZ6 SNP Silent 17 27286098 C A 23 31 BRCA TCGA-D8-A1JB RECQL5 SNP Missense_Mutation 17 73624831 G A 43 49 BRCA TCGA-D8-A1JB CDC37 SNP Missense_Mutation 19 10502337 C T 18 84 BRCA TCGA-D8-A1JB FXYD5 SNP Missense_Mutation 19 35651628 G T 33 48 BRCA TCGA-D8-A1JB HNRNPUL1 SNP Missense_Mutation 19 41778020 C A 18 56 BRCA TCGA-D8-A1JB SUPT7L SNP Missense_Mutation 2 27876556 T G 56 66 BRCA TCGA-D8-A1JB CST9 SNP Missense_Mutation 20 23584193 C T 26 48 BRCA TCGA-D8-A1JB ARAF SNP Splice_Site 23 47422467 G A 36 91 BRCA TCGA-D8-A1JB HPS3 SNP Missense_Mutation 3 148877913 G A 45 75 BRCA TCGA-D8-A1JB SI SNP Missense_Mutation 3 164710170 T A 60 50 BRCA TCGA-D8-A1JB MUC4 SNP Missense_Mutation 3 195506606 C G 29 50 BRCA TCGA-D8-A1JB TOP2B SNP Silent 3 25668734 T G 56 70 BRCA TCGA-D8-A1JB LRRFIP2 SNP Missense_Mutation 3 37114294 T C 50 89 BRCA TCGA-D8-A1JB CLDND1 SNP Missense_Mutation 3 98240072 T C 50 84 BRCA TCGA-D8-A1JB FAT1 SNP Missense_Mutation 4 187518179 G T 41 98 BRCA TCGA-D8-A1JB DOCK2 SNP Missense_Mutation 5 169138958 A T 10 93 BRCA TCGA-D8-A1JB GCNT2 SNP Nonsense_Mutation 6 10556843 A T 5 70 BRCA TCGA-D8-A1JB AHI1 SNP Missense_Mutation 6 135751072 G A 40 71 BRCA TCGA-D8-A1JC MAB21L3 SNP Missense_Mutation 1 116670894 G C 45 62 BRCA TCGA-D8-A1JC PDE4DIP SNP Missense_Mutation 1 144952346 G A 38 55 BRCA TCGA-D8-A1JC PVRL4 SNP Missense_Mutation 1 161043062 C G 31 73 BRCA TCGA-D8-A1JC C1orf226 SNP Silent 1 162351892 G A 41 53 BRCA TCGA-D8-A1JC ASTN1 SNP Silent 1 176863701 C T 32 55 BRCA TCGA-D8-A1JC RASAL2 SNP Missense_Mutation 1 178408562 G A 40 77 BRCA TCGA-D8-A1JC PRG4 SNP Silent 1 186280194 C T 29 53 BRCA TCGA-D8-A1JC SRGAP2 SNP Missense_Mutation 1 206619542 G C 45 100 BRCA TCGA-D8-A1JC IL20 SNP Missense_Mutation 1 207039354 G A 48 57 BRCA TCGA-D8-A1JC C1orf198 SNP Missense_Mutation 1 230979431 C T 31 63 BRCA TCGA-D8-A1JC KCNQ4 SNP Silent 1 41300696 C T 19 55 BRCA TCGA-D8-A1JC TET1 SNP Missense_Mutation 10 70333071 G A 48 52 BRCA TCGA-D8-A1JC DCDC5 DEL Silent 11 30900183 ATGTCTGTGGC - 4 49 BRCA TCGA-D8-A1JC ABTB2 SNP Splice_Site 11 34192619 C T 32 99 BRCA TCGA-D8-A1JC LRP4 SNP Missense_Mutation 11 46920500 C G 31 99 BRCA TCGA-D8-A1JC P4HA3 SNP Missense_Mutation 11 73978162 C T 27 51 BRCA TCGA-D8-A1JC ADAMTS20 SNP Missense_Mutation 12 43823449 C T 26 57 BRCA TCGA-D8-A1JC LRRIQ1 SNP Missense_Mutation 12 85438525 C T 29 58 BRCA TCGA-D8-A1JC SACS SNP Missense_Mutation 13 23915127 G C 33 100 BRCA TCGA-D8-A1JC MMP14 SNP Missense_Mutation 14 23311622 C G 30 56 BRCA TCGA-D8-A1JC TGM1 SNP Missense_Mutation 14 24729190 C T 23 98 BRCA TCGA-D8-A1JC RALGAPA1 SNP Nonsense_Mutation 14 36192403 A T 13 92 BRCA TCGA-D8-A1JC TC2N SNP Missense_Mutation 14 92268677 G C 33 72 BRCA TCGA-D8-A1JC CATSPER2 SNP Missense_Mutation 15 43940189 T A 50 63 BRCA TCGA-D8-A1JC FAM227B SNP Silent 15 49659665 G A 45 50 BRCA TCGA-D8-A1JC KIF23 SNP Missense_Mutation 15 69733225 G C 47 100 BRCA TCGA-D8-A1JC MPI SNP Silent 15 75188521 C T 32 56 BRCA TCGA-D8-A1JC ERCC4 SNP Missense_Mutation 16 14024573 C T 23 97 BRCA TCGA-D8-A1JC DNAH3 SNP Missense_Mutation 16 20976523 C T 31 100 BRCA TCGA-D8-A1JC TSC2 SNP Silent 16 2134403 C T 32 53 BRCA TCGA-D8-A1JC CD19 DEL Frame_Shift_Del 16 28948602 AGAG - 3 49 BRCA TCGA-D8-A1JC MVP SNP Silent 16 29853120 C T 19 36 BRCA TCGA-D8-A1JC CTCF SNP Silent 16 67662443 A T 8 65 BRCA TCGA-D8-A1JC GRIN2A SNP Missense_Mutation 16 9857878 C T 29 65 BRCA TCGA-D8-A1JC MYH13 SNP Splice_site 17 10265677 G A 40 52 BRCA TCGA-D8-A1JC MYH8 SNP Missense_Mutation 17 10312639 C A 32 61 BRCA TCGA-D8-A1JC CD300LG SNP Nonsense_Mutation 17 41939193 C T 21 61 BRCA TCGA-D8-A1JC AXIN2 SNP Missense_Mutation 17 63554225 C G 29 97 BRCA TCGA-D8-A1JC EPOR SNP Missense_Mutation 19 11489402 C G 29 52 BRCA TCGA-D8-A1JC ZNF44 DEL Frame_Shift_Del 19 12384085 TCATGTGTCT - 50 63 BRCA TCGA-D8-A1JC DNAJB1 SNP Missense_Mutation 19 14627556 G T 35 93 BRCA TCGA-D8-A1JC NCR1 SNP Silent 19 55420647 A G 3 54 BRCA TCGA-D8-A1JC CAMSAP3 SNP Missense_Mutation 19 7676908 C T 30 57 BRCA TCGA-D8-A1JC IL18R1 SNP Missense_Mutation 2 102998106 C G 32 49 BRCA TCGA-D8-A1JC SLC4A3 SNP Missense_Mutation 2 220501075 C A 28 73 BRCA TCGA-D8-A1JC D2HGDH SNP Silent 2 242707333 G A 47 74 BRCA TCGA-D8-A1JC MRPL53 SNP Missense_Mutation 2 74699368 G A 37 74 BRCA TCGA-D8-A1JC USP39 SNP Splice_Site 2 85848451 T G 59 55 BRCA TCGA-D8-A1JC RMND5A SNP Missense_Mutation 2 86993049 C A 18 66 BRCA TCGA-D8-A1JC KIAA1210 SNP Missense_Mutation 23 118215410 C T 31 40 BRCA TCGA-D8-A1JC HCFC1 SNP Missense_Mutation 23 153219201 C T 31 71 BRCA TCGA-D8-A1JC F8 SNP Missense_Mutation 23 154124399 C A 21 70 BRCA TCGA-D8-A1JC RPGR SNP Missense_Mutation 23 38156545 T A 54 42 BRCA TCGA-D8-A1JC NLGN4X SNP Missense_Mutation 23 5811360 G A 33 64 BRCA TCGA-D8-A1JC VSIG4 SNP Silent 23 65247938 G A 45 40 BRCA TCGA-D8-A1JC TRMT10C SNP Missense_Mutation 3 101284455 C T 32 68 BRCA TCGA-D8-A1JC KIAA2018 SNP Missense_Mutation 3 113375166 C T 19 84 BRCA TCGA-D8-A1JC MRPL3 SNP Silent 3 131188558 C T 30 62 BRCA TCGA-D8-A1JC PIK3CB SNP Missense_Mutation 3 138374293 C T 30 100 BRCA TCGA-D8-A1JC CNTN6 SNP Missense_Mutation 3 1414111 G A 48 41 BRCA TCGA-D8-A1JC MRPS25 SNP Nonsense_Mutation 3 15094076 G A 37 58 BRCA TCGA-D8-A1JC SMC4 SNP Missense_Mutation 3 160141276 G C 45 89 BRCA TCGA-D8-A1JC RBM6 SNP Missense_Mutation 3 50091779 C G 17 57 BRCA TCGA-D8-A1JC HADH SNP Missense_Mutation 4 108954346 G A 33 100 BRCA TCGA-D8-A1JC FREM3 SNP Silent 4 144617794 G A 41 51 BRCA TCGA-D8-A1JC TRIML1 SNP Missense_Mutation 4 189061035 A T 10 66 BRCA TCGA-D8-A1JC PCDHB3 SNP Missense_Mutation 5 140482555 C A 31 50 BRCA TCGA-D8-A1JC CAMK2A SNP Missense_Mutation 5 149637130 C T 31 100 BRCA TCGA-D8-A1JC PDZD2 SNP Missense_Mutation 5 31799670 G C 33 71 BRCA TCGA-D8-A1JC NIPBL SNP Nonsense_Mutation 5 37020923 C T 31 69 BRCA TCGA-D8-A1JC DAB2 SNP Silent 5 39383284 G A 46 67 BRCA TCGA-D8-A1JC FAM81B SNP Missense_Mutation 5 94749730 A G 8 51 BRCA TCGA-D8-A1JC GOPC SNP Missense_Mutation 6 117894762 C T 29 100 BRCA TCGA-D8-A1JC NKAIN2 SNP Missense_Mutation 6 124604227 T A 52 93 BRCA TCGA-D8-A1JC EYA4 SNP Missense_Mutation 6 133783840 G A 36 98 BRCA TCGA-D8-A1JC TBX18 SNP Missense_Mutation 6 85466511 G A 41 100 BRCA TCGA-D8-A1JC NAMPT SNP Missense_Mutation 7 105893591 C G 19 98 BRCA TCGA-D8-A1JC PCLO SNP Missense_Mutation 7 82544011 C G 32 100 BRCA TCGA-D8-A1JC FBXO32 SNP Silent 8 124526556 T C 63 56 BRCA TCGA-D8-A1JC KCNQ3 SNP Silent 8 133192479 G A 41 58 BRCA TCGA-D8-A1JC CYP11B1 SNP Silent 8 143957771 G A 45 17 BRCA TCGA-D8-A1JC PPAPDC1B SNP Missense_Mutation 8 38124737 C G 29 62 BRCA TCGA-D8-A1JC RBM12B SNP Silent 8 94747082 G A 36 50 BRCA TCGA-D8-A1JC FANCG SNP Silent 9 35076497 T C 59 38 BRCA TCGA-D8-A1JD OR6P1 SNP Missense_Mutation 1 158532878 T A 51 47 BRCA TCGA-D8-A1JD ABL2 SNP Missense_Mutation 1 179090960 G A 34 94 BRCA TCGA-D8-A1JD IKBKE SNP Missense_Mutation 1 206658614 G T 33 77 BRCA TCGA-D8-A1JD CR2 DEL Frame_Shift_Del 1 207653332 CAGGTTTGATA - 25 47 BRCA TCGA-D8-A1JD RAB4A SNP Silent 1 229434758 G A 43 56 BRCA TCGA-D8-A1JD NIPAL3 SNP Missense_Mutation 1 24768672 C T 27 85 BRCA TCGA-D8-A1JD ARID1A SNP Silent 1 27106230 G T 33 71 BRCA TCGA-D8-A1JD NFYC SNP Missense_Mutation 1 41236337 C T 24 67 BRCA TCGA-D8-A1JD NPHP4 SNP Silent 1 5940238 G A 45 63 BRCA TCGA-D8-A1JD PKN2 SNP Missense_Mutation 1 89294223 G C 33 96 BRCA TCGA-D8-A1JD STAM SNP Silent 10 17686365 C T 31 63 BRCA TCGA-D8-A1JD NEBL SNP Splice_Site 10 21177025 C A 18 87 BRCA TCGA-D8-A1JD WDFY4 SNP Missense_Mutation 10 50036827 C G 22 69 BRCA TCGA-D8-A1JD ABCG4 SNP Missense_Mutation 11 119029289 T G 51 70 BRCA TCGA-D8-A1JD PDE3B SNP Missense_Mutation 11 14854289 G C 33 97 BRCA TCGA-D8-A1JD TSG101 SNP Silent 11 18503243 T C 56 60 BRCA TCGA-D8-A1JD ZFP91 SNP Missense_Mutation 11 58384907 G A 33 79 BRCA TCGA-D8-A1JD IQCD SNP Nonsense_Mutation 12 113633598 G A 46 78 BRCA TCGA-D8-A1JD SDSL SNP Missense_Mutation 12 113875830 C A 17 68 BRCA TCGA-D8-A1JD SLCO1B7 SNP Missense_Mutation 12 21207557 G A 40 48 BRCA TCGA-D8-A1JD ASIC1 SNP Silent 12 50453668 C T 19 56 BRCA TCGA-D8-A1JD ACSM4 SNP Missense_Mutation 12 7480932 G A 38 63 BRCA TCGA-D8-A1JD B3GALTL SNP Silent 13 31891805 C T 17 70 BRCA TCGA-D8-A1JD PLEK2 SNP Missense_Mutation 14 67864511 C A 18 99 BRCA TCGA-D8-A1JD TLN2 SNP Splice_site 15 63097800 T G 59 93 BRCA TCGA-D8-A1JD CILP SNP Missense_Mutation 15 65494258 T C 54 57 BRCA TCGA-D8-A1JD CSPG4 SNP Silent 15 75977998 C A 29 52 BRCA TCGA-D8-A1JD KIAA1199 SNP Silent 15 81212548 C A 22 55 BRCA TCGA-D8-A1JD WDR93 SNP Missense_Mutation 15 90270408 C A 24 52 BRCA TCGA-D8-A1JD KIF22 SNP Missense_Mutation 16 29815348 G A 37 43 BRCA TCGA-D8-A1JD PMFBP1 SNP Missense_Mutation 16 72157496 C T 31 54 BRCA TCGA-D8-A1JD BCAR1 SNP Nonsense_Mutation 16 75267803 C A 30 69 BRCA TCGA-D8-A1JD TMEM170A SNP Nonsense_Mutation 16 75485730 C T 18 81 BRCA TCGA-D8-A1JD CDYL2 SNP Missense_Mutation 16 80667011 A C 7 83 BRCA TCGA-D8-A1JD ZNF624 SNP Missense_Mutation 17 16526967 A T 8 50 BRCA TCGA-D8-A1JD SMYD4 SNP Missense_Mutation 17 1707930 C T 18 57 BRCA TCGA-D8-A1JD SREBF1 SNP Missense_Mutation 17 17721600 C G 20 60 BRCA TCGA-D8-A1JD SLFN13 SNP Missense_Mutation 17 33768644 A C 9 51 BRCA TCGA-D8-A1JD C17orf104 SNP Missense_Mutation 17 42744064 A C 9 80 BRCA TCGA-D8-A1JD PLEKHM1 SNP Missense_Mutation 17 43516865 A C 3 87 BRCA TCGA-D8-A1JD NSFP1 SNP Silent 17 44552565 G T 34 90 BRCA TCGA-D8-A1JD GIP SNP Missense_Mutation 17 47044526 C G 32 54 BRCA TCGA-D8-A1JD SAMD14 SNP Missense_Mutation 17 48191628 G T 43 71 BRCA TCGA-D8-A1JD TRAPPC8 SNP Missense_Mutation 18 29426707 T A 64 53 BRCA TCGA-D8-A1JD OR10H4 SNP Missense_Mutation 19 16060202 C A 21 54 BRCA TCGA-D8-A1JD ZNF790 SNP Missense_Mutation 19 37309690 G A 45 61 BRCA TCGA-D8-A1JD ACTN4 SNP Missense_Mutation 19 39219642 G A 42 79 BRCA TCGA-D8-A1JD SAFB2 DEL In_Frame_Del 19 5587279 TAC - 57 58 BRCA TCGA-D8-A1JD PEX11G SNP Missense_Mutation 19 7550870 G T 33 70 BRCA TCGA-D8-A1JD AFF3 SNP Missense_Mutation 2 100199290 G T 42 55 BRCA TCGA-D8-A1JD ABCB11 SNP Missense_Mutation 2 169791842 G A 42 74 BRCA TCGA-D8-A1JD COL6A3 SNP Missense_Mutation 2 238283417 G A 43 68 BRCA TCGA-D8-A1JD KIF1A SNP Splice_Site 2 241710387 C A 18 95 BRCA TCGA-D8-A1JD SMEK2 SNP Missense_Mutation 2 55825928 C G 25 100 BRCA TCGA-D8-A1JD CAPG SNP Missense_Mutation 2 85628923 G C 33 72 BRCA TCGA-D8-A1JD TAF7L SNP Missense_Mutation 23 100530996 T A 58 54 BRCA TCGA-D8-A1JD TAZ SNP Missense_Mutation 23 153642519 G A 33 59 BRCA TCGA-D8-A1JD SSX6 SNP Silent 23 47969393 A G 10 48 BRCA TCGA-D8-A1JD STARD8 SNP Missense_Mutation 23 67937723 G C 41 48 BRCA TCGA-D8-A1JD MAGEE1 DEL Frame_Shift_Del 23 75649889 TA - 61 46 BRCA TCGA-D8-A1JD RETNLB INS Frame_Shift_Ins 3 108476001 - GG 15 49 BRCA TCGA-D8-A1JD CD200R1 SNP Silent 3 112666767 C T 23 44 BRCA TCGA-D8-A1JD PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-D8-A1JD PIK3CA SNP Missense_Mutation 3 178938934 G A 45 98 BRCA TCGA-D8-A1JD PIK3CA SNP Missense_Mutation 3 178951957 G A 45 100 BRCA TCGA-D8-A1JD IL5RA SNP Missense_Mutation 3 3144387 A T 6 73 BRCA TCGA-D8-A1JD XCR1 SNP Silent 3 46063167 G A 44 57 BRCA TCGA-D8-A1JD DCHS2 DEL Splice_site 4 155191053 TGACT - 55 65 BRCA TCGA-D8-A1JD GALNT7 SNP Missense_Mutation 4 174169552 T A 50 93 BRCA TCGA-D8-A1JD NPFFR2 SNP Missense_Mutation 4 73013422 C G 29 61 BRCA TCGA-D8-A1JD GPRIN3 SNP Silent 4 90169141 G T 37 49 BRCA TCGA-D8-A1JD RAP1GDS1 SNP Missense_Mutation 4 99358139 A G 8 88 BRCA TCGA-D8-A1JD SLC36A2 SNP Missense_Mutation 5 150704868 C T 28 84 BRCA TCGA-D8-A1JD SLC34A1 SNP Silent 5 176815139 T A 54 52 BRCA TCGA-D8-A1JD BET3L SNP Missense_Mutation 6 116821736 G T 35 54 BRCA TCGA-D8-A1JD SYNE1 SNP Missense_Mutation 6 152671436 T G 58 91 BRCA TCGA-D8-A1JD CYP21A2 SNP Missense_Mutation 6 32007206 G A 48 59 BRCA TCGA-D8-A1JD DEFB133 SNP Silent 6 49917113 G T 41 45 BRCA TCGA-D8-A1JD DNAH11 SNP Splice_Site 7 21640549 G A 42 96 BRCA TCGA-D8-A1JD PKD1L1 SNP Missense_Mutation 7 47925506 C T 19 28 BRCA TCGA-D8-A1JD CDK14 SNP Silent 7 90585061 G C 47 68 BRCA TCGA-D8-A1JD HGSNAT SNP Missense_Mutation 8 43046629 C G 24 48 BRCA TCGA-D8-A1JD VAV2 SNP Missense_Mutation 9 136649470 T G 59 84 BRCA TCGA-D8-A1JE CDK11A SNP Missense_Mutation 1 1638858 G A 39 81 BRCA TCGA-D8-A1JE C1orf129 SNP Splice_site 1 170940889 A G 12 40 BRCA TCGA-D8-A1JE DHX9 SNP Missense_Mutation 1 182849707 G A 40 96 BRCA TCGA-D8-A1JE KIF14 SNP Missense_Mutation 1 200584501 C A 26 99 BRCA TCGA-D8-A1JE GPATCH2 SNP Missense_Mutation 1 217793197 T C 62 90 BRCA TCGA-D8-A1JE MKI67 SNP Missense_Mutation 10 129903220 T C 52 39 BRCA TCGA-D8-A1JE MYO3A SNP Splice_Site 10 26446238 G A 36 100 BRCA TCGA-D8-A1JE FRMPD2 SNP Missense_Mutation 10 49389016 T C 53 52 BRCA TCGA-D8-A1JE ANK3 SNP Missense_Mutation 10 61833948 T C 63 72 BRCA TCGA-D8-A1JE ANK3 SNP Missense_Mutation 10 61835214 A T 12 62 BRCA TCGA-D8-A1JE SYT8 SNP Missense_Mutation 11 1855822 G T 42 52 BRCA TCGA-D8-A1JE MSI1 SNP Missense_Mutation 12 120794783 G A 42 94 BRCA TCGA-D8-A1JE DDX55 SNP Missense_Mutation 12 124094511 C G 26 100 BRCA TCGA-D8-A1JE KIAA0430 SNP Silent 16 15702217 T A 51 24 BRCA TCGA-D8-A1JE ANKS4B SNP Missense_Mutation 16 21261144 A T 2 64 BRCA TCGA-D8-A1JE FUK SNP Missense_Mutation 16 70497609 A C 7 87 BRCA TCGA-D8-A1JE NLRP8 SNP Missense_Mutation 19 56466488 C T 23 44 BRCA TCGA-D8-A1JE IGFBP2 SNP Missense_Mutation 2 217525400 T C 55 75 BRCA TCGA-D8-A1JE DNMT3A SNP Missense_Mutation 2 25457218 C T 26 99 BRCA TCGA-D8-A1JE BPIFA2 SNP Silent 20 31756984 C T 27 45 BRCA TCGA-D8-A1JE L3MBTL1 SNP Silent 20 42143725 G A 40 39 BRCA TCGA-D8-A1JE L3MBTL1 SNP Silent 20 42161475 G A 40 11 BRCA TCGA-D8-A1JE SEC14L6 SNP Missense_Mutation 22 30921905 C T 30 90 BRCA TCGA-D8-A1JE PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-D8-A1JE ACVR2B SNP Nonsense_Mutation 3 38520670 A T 9 69 BRCA TCGA-D8-A1JE CIDEC SNP Silent 3 9911640 G A 40 43 BRCA TCGA-D8-A1JE FAT4 DEL Frame_Shift_Del 4 126320040 TA - 61 49 BRCA TCGA-D8-A1JE PCDHA1 SNP Silent 5 140167729 G A 38 38 BRCA TCGA-D8-A1JE GPR98 SNP Missense_Mutation 5 89970042 C T 29 99 BRCA TCGA-D8-A1JE ZNF451 SNP Missense_Mutation 6 57012098 C A 27 55 BRCA TCGA-D8-A1JE KIF13B SNP Missense_Mutation 8 28981618 C T 19 94 BRCA TCGA-D8-A1JE NRG1 SNP Missense_Mutation 8 32620793 G T 33 75 BRCA TCGA-D8-A1JE PSIP1 SNP Missense_Mutation 9 15490026 C A 22 100 BRCA TCGA-D8-A1JE CTSL2 SNP Missense_Mutation 9 99797047 G A 46 48 BRCA TCGA-D8-A1JF PTPN22 SNP Silent 1 114377000 T A 51 46 BRCA TCGA-D8-A1JF CENPF SNP Splice_Site 1 214832191 A G 15 82 BRCA TCGA-D8-A1JF CELA3B SNP Missense_Mutation 1 22304922 C T 27 72 BRCA TCGA-D8-A1JF SRSF11 SNP Missense_Mutation 1 70712533 G C 40 97 BRCA TCGA-D8-A1JF ARID5B SNP Missense_Mutation 10 63851397 G C 43 60 BRCA TCGA-D8-A1JF OR5I1 SNP Missense_Mutation 11 55703086 G C 43 64 BRCA TCGA-D8-A1JF OTUB1 SNP Missense_Mutation 11 63753882 G C 39 50 BRCA TCGA-D8-A1JF GRM5 SNP Missense_Mutation 11 88583174 C T 26 95 BRCA TCGA-D8-A1JF KDM4E SNP Nonsense_Mutation 11 94759549 C A 18 59 BRCA TCGA-D8-A1JF DENND5B SNP Silent 12 31579329 T C 62 44 BRCA TCGA-D8-A1JF KIF21A INS Frame_Shift_Ins 12 39734847 - TTAA 28 71 BRCA TCGA-D8-A1JF ANO6 SNP Missense_Mutation 12 45781974 G A 38 79 BRCA TCGA-D8-A1JF CILP SNP Missense_Mutation 15 65490682 C T 31 85 BRCA TCGA-D8-A1JF USP10 SNP Missense_Mutation 16 84778300 G T 46 55 BRCA TCGA-D8-A1JF TP53 SNP Missense_Mutation 17 7578394 T C 51 89 BRCA TCGA-D8-A1JF PER1 SNP Missense_Mutation 17 8051116 G A 47 68 BRCA TCGA-D8-A1JF FHOD3 SNP Missense_Mutation 18 34297797 T G 64 49 BRCA TCGA-D8-A1JF ZNF564 INS Frame_Shift_Ins 19 12639170 - T 8 64 BRCA TCGA-D8-A1JF DMPK SNP Missense_Mutation 19 46282601 T G 54 85 BRCA TCGA-D8-A1JF SCN2A SNP Missense_Mutation 2 166221684 G A 34 100 BRCA TCGA-D8-A1JF MSGN1 SNP Missense_Mutation 2 17997955 C T 32 66 BRCA TCGA-D8-A1JF COMMD7 SNP Missense_Mutation 20 31294404 G A 42 79 BRCA TCGA-D8-A1JF C20orf132 SNP Missense_Mutation 20 35731179 G C 33 65 BRCA TCGA-D8-A1JF APCDD1L SNP Missense_Mutation 20 57036021 C T 19 92 BRCA TCGA-D8-A1JF DSCAM SNP Silent 21 41710185 G A 44 41 BRCA TCGA-D8-A1JF SAGE1 SNP Missense_Mutation 23 134992588 C T 29 57 BRCA TCGA-D8-A1JF GRIPAP1 SNP Silent 23 48853758 T A 49 45 BRCA TCGA-D8-A1JF CLCN5 SNP Missense_Mutation 23 49845354 G A 48 96 BRCA TCGA-D8-A1JF CCNB3 SNP Silent 23 50031866 A C 7 52 BRCA TCGA-D8-A1JF ABCB7 SNP Splice_site 23 74376106 A G 8 68 BRCA TCGA-D8-A1JF FNDC3B SNP Silent 3 172098814 A G 8 56 BRCA TCGA-D8-A1JF PIK3CA SNP Missense_Mutation 3 178927430 G A 40 83 BRCA TCGA-D8-A1JF PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-D8-A1JF DSPP SNP Silent 4 88537105 C T 27 43 BRCA TCGA-D8-A1JF PCDHA2 SNP Missense_Mutation 5 140174848 C T 27 50 BRCA TCGA-D8-A1JF ANKRA2 SNP Missense_Mutation 5 72858604 G A 41 69 BRCA TCGA-D8-A1JF HBS1L SNP Missense_Mutation 6 135358867 C G 32 51 BRCA TCGA-D8-A1JF IL22RA2 SNP Silent 6 137482869 G A 34 57 BRCA TCGA-D8-A1JF ZNF76 SNP Silent 6 35261689 G A 34 89 BRCA TCGA-D8-A1JF EGFR SNP Missense_Mutation 7 55211097 G A 37 84 BRCA TCGA-D8-A1JF DLC1 SNP Missense_Mutation 8 12956964 G T 43 61 BRCA TCGA-D8-A1JF CLU SNP Missense_Mutation 8 27461880 T C 50 73 BRCA TCGA-D8-A1JF UBAP2 INS In_Frame_Ins 9 33923840 - GGG 15 91 BRCA TCGA-D8-A1JF SPTLC1 SNP Missense_Mutation 9 94809915 A C 10 70 BRCA TCGA-D8-A1JG PRAMEF12 SNP Missense_Mutation 1 12835814 C T 23 31 BRCA TCGA-D8-A1JG PRAMEF11 SNP Missense_Mutation 1 12885009 A C 3 45 BRCA TCGA-D8-A1JG FCRL3 SNP Missense_Mutation 1 157650537 T C 50 45 BRCA TCGA-D8-A1JG FMO2 SNP Nonsense_Mutation 1 171162534 G T 33 86 BRCA TCGA-D8-A1JG PAX7 SNP Missense_Mutation 1 19018346 C A 28 82 BRCA TCGA-D8-A1JG F13B SNP Missense_Mutation 1 197032127 A C 1 80 BRCA TCGA-D8-A1JG UBE2T SNP Missense_Mutation 1 202304779 C T 31 59 BRCA TCGA-D8-A1JG PLEKHA6 SNP Missense_Mutation 1 204192633 G A 40 79 BRCA TCGA-D8-A1JG G0S2 SNP Missense_Mutation 1 209849295 C A 19 54 BRCA TCGA-D8-A1JG MARK1 SNP Silent 1 220824018 G A 41 56 BRCA TCGA-D8-A1JG RGS7 SNP Missense_Mutation 1 240969623 G T 33 79 BRCA TCGA-D8-A1JG CHML SNP Nonsense_Mutation 1 241798027 C A 32 64 BRCA TCGA-D8-A1JG PGBD2 SNP Missense_Mutation 1 249212333 G A 39 61 BRCA TCGA-D8-A1JG SYTL1 SNP Silent 1 27680340 G A 40 44 BRCA TCGA-D8-A1JG C1orf141 SNP Nonsense_Mutation 1 67581050 C A 32 55 BRCA TCGA-D8-A1JG DRD2 SNP Missense_Mutation 11 113283314 C G 30 89 BRCA TCGA-D8-A1JG ARNTL SNP Missense_Mutation 11 13381930 A T 2 72 BRCA TCGA-D8-A1JG MRGPRX3 SNP Silent 11 18158830 C A 22 73 BRCA TCGA-D8-A1JG MADD SNP Missense_Mutation 11 47345258 G A 39 98 BRCA TCGA-D8-A1JG OR51A2 SNP Missense_Mutation 11 4976079 T G 62 80 BRCA TCGA-D8-A1JG WDR66 SNP Silent 12 122441598 C T 29 72 BRCA TCGA-D8-A1JG CCDC62 SNP Missense_Mutation 12 123262167 C T 32 75 BRCA TCGA-D8-A1JG SBNO1 SNP Missense_Mutation 12 123815832 T G 52 72 BRCA TCGA-D8-A1JG TMEM132D SNP Missense_Mutation 12 130184703 G A 40 62 BRCA TCGA-D8-A1JG POLE SNP Missense_Mutation 12 133250250 G C 33 79 BRCA TCGA-D8-A1JG CAPRIN2 SNP Missense_Mutation 12 30888067 C T 31 63 BRCA TCGA-D8-A1JG NAV3 SNP Missense_Mutation 12 78443778 G T 33 100 BRCA TCGA-D8-A1JG NEK3 SNP Silent 13 52707287 G A 38 49 BRCA TCGA-D8-A1JG NFATC4 SNP Nonsense_Mutation 14 24845639 C A 27 41 BRCA TCGA-D8-A1JG LRFN5 SNP Missense_Mutation 14 42356316 C A 24 96 BRCA TCGA-D8-A1JG FKBP3 SNP Missense_Mutation 14 45599056 T G 64 61 BRCA TCGA-D8-A1JG PLEKHH1 SNP Missense_Mutation 14 68042162 C G 32 62 BRCA TCGA-D8-A1JG SIPA1L1 SNP Silent 14 72085583 A C 9 47 BRCA TCGA-D8-A1JG ZC3H14 SNP Missense_Mutation 14 89038412 G C 45 91 BRCA TCGA-D8-A1JG DICER1 SNP Missense_Mutation 14 95582133 G A 37 99 BRCA TCGA-D8-A1JG BCL11B SNP Silent 14 99697761 G A 38 51 BRCA TCGA-D8-A1JG DHX38 SNP Silent 16 72130772 C T 27 51 BRCA TCGA-D8-A1JG C17orf97 SNP Silent 17 262973 G A 38 36 BRCA TCGA-D8-A1JG SUZ12 SNP Missense_Mutation 17 30321730 C G 32 98 BRCA TCGA-D8-A1JG PCGF2 DEL Frame_Shift_Del 17 36895484 TGTCT - 51 73 BRCA TCGA-D8-A1JG RARA SNP Silent 17 38508726 C T 29 73 BRCA TCGA-D8-A1JG CCR7 SNP Missense_Mutation 17 38721654 A T 7 59 BRCA TCGA-D8-A1JG TP53 SNP Missense_Mutation 17 7577073 G A 33 49 BRCA TCGA-D8-A1JG CTAGE1 SNP Missense_Mutation 18 19995860 G T 33 55 BRCA TCGA-D8-A1JG NPC1 SNP Missense_Mutation 18 21140315 G A 47 88 BRCA TCGA-D8-A1JG PIAS2 INS Frame_Shift_Ins 18 44416348 - T 28 100 BRCA TCGA-D8-A1JG TXNL1 SNP Missense_Mutation 18 54281805 T G 64 68 BRCA TCGA-D8-A1JG TSHZ1 SNP Missense_Mutation 18 73000318 A G 8 91 BRCA TCGA-D8-A1JG ZNF99 SNP Nonsense_Mutation 19 22941531 G A 48 51 BRCA TCGA-D8-A1JG ZNF546 SNP Missense_Mutation 19 40519819 G T 33 65 BRCA TCGA-D8-A1JG KLK11 SNP Nonsense_Mutation 19 51526351 G T 42 68 BRCA TCGA-D8-A1JG ZNF534 SNP Nonsense_Mutation 19 52941953 G T 45 51 BRCA TCGA-D8-A1JG SLC27A5 SNP Silent 19 59009984 G T 37 58 BRCA TCGA-D8-A1JG PRPF40A SNP Nonsense_Mutation 2 153525674 G A 38 83 BRCA TCGA-D8-A1JG SCN3A SNP Missense_Mutation 2 165969454 A G 13 93 BRCA TCGA-D8-A1JG TTN SNP Missense_Mutation 2 179574368 C T 31 100 BRCA TCGA-D8-A1JG CPS1 SNP Missense_Mutation 2 211503908 C A 17 96 BRCA TCGA-D8-A1JG WDR69 SNP Missense_Mutation 2 228786260 G A 42 95 BRCA TCGA-D8-A1JG BRE SNP Missense_Mutation 2 28117484 G A 40 73 BRCA TCGA-D8-A1JG PLEKHH2 SNP Splice_site 2 43937469 G A 39 46 BRCA TCGA-D8-A1JG POLR1A SNP Missense_Mutation 2 86276027 A C 13 77 BRCA TCGA-D8-A1JG TMEM131 SNP Missense_Mutation 2 98412831 C A 32 99 BRCA TCGA-D8-A1JG INPP4A SNP Splice_Site 2 99175925 G C 33 87 BRCA TCGA-D8-A1JG NCOA6 SNP Nonsense_Mutation 20 33364231 G A 48 68 BRCA TCGA-D8-A1JG EDN3 SNP Silent 20 57899430 C T 18 44 BRCA TCGA-D8-A1JG MYT1 SNP Silent 20 62871696 C T 31 48 BRCA TCGA-D8-A1JG GNG5P2 SNP Silent 23 109590108 C T 31 77 BRCA TCGA-D8-A1JG KLHL13 SNP Missense_Mutation 23 117053569 T C 58 76 BRCA TCGA-D8-A1JG SLITRK2 SNP Silent 23 144905707 C T 23 53 BRCA TCGA-D8-A1JG CNKSR2 SNP Silent 23 21450849 C T 21 49 BRCA TCGA-D8-A1JG CDK16 SNP Splice_site 23 47088130 G T 42 79 BRCA TCGA-D8-A1JG SHROOM4 SNP Silent 23 50350572 G A 44 54 BRCA TCGA-D8-A1JG BTLA SNP Silent 3 112185099 A C 1 55 BRCA TCGA-D8-A1JG GATA2 SNP Missense_Mutation 3 128205206 G C 35 93 BRCA TCGA-D8-A1JG PIK3CA INS Frame_Shift_Ins 3 178928086 - G 63 90 BRCA TCGA-D8-A1JG C3orf77 SNP Missense_Mutation 3 44285298 C T 26 46 BRCA TCGA-D8-A1JG CAMKV SNP Missense_Mutation 3 49898960 G A 37 99 BRCA TCGA-D8-A1JG WDR1 SNP Missense_Mutation 4 10079036 C G 19 84 BRCA TCGA-D8-A1JG AP1AR SNP Missense_Mutation 4 113189561 G A 37 73 BRCA TCGA-D8-A1JG NDST3 SNP Silent 4 119161726 C T 19 44 BRCA TCGA-D8-A1JG MYOZ2 SNP Silent 4 120072076 C A 29 74 BRCA TCGA-D8-A1JG MND1 SNP Missense_Mutation 4 154315444 C G 24 60 BRCA TCGA-D8-A1JG ASB5 SNP Missense_Mutation 4 177142658 C A 25 93 BRCA TCGA-D8-A1JG N4BP2 SNP Missense_Mutation 4 40121887 C A 32 53 BRCA TCGA-D8-A1JG ENAM SNP Missense_Mutation 4 71500234 G T 34 52 BRCA TCGA-D8-A1JG IBSP SNP Missense_Mutation 4 88723554 C T 26 67 BRCA TCGA-D8-A1JG LOX SNP Nonsense_Mutation 5 121411136 G A 39 58 BRCA TCGA-D8-A1JG TRIO SNP Silent 5 14363873 G A 34 58 BRCA TCGA-D8-A1JG LSM11 SNP Missense_Mutation 5 157182067 C G 30 86 BRCA TCGA-D8-A1JG DOCK2 SNP Silent 5 169494675 C T 31 44 BRCA TCGA-D8-A1JG SH3PXD2B SNP Silent 5 171766090 G C 47 52 BRCA TCGA-D8-A1JG C5orf42 SNP Missense_Mutation 5 37169272 T G 52 59 BRCA TCGA-D8-A1JG CMYA5 SNP Missense_Mutation 5 79030169 T G 64 50 BRCA TCGA-D8-A1JG SPZ1 SNP Nonsense_Mutation 5 79616317 G T 33 64 BRCA TCGA-D8-A1JG NEDD9 SNP Missense_Mutation 6 11191022 G C 36 49 BRCA TCGA-D8-A1JG ROS1 SNP Nonsense_Mutation 6 117658501 C T 30 75 BRCA TCGA-D8-A1JG NUP43 SNP Silent 6 150067641 G A 39 44 BRCA TCGA-D8-A1JG DLL1 SNP Missense_Mutation 6 170592574 C T 19 100 BRCA TCGA-D8-A1JG POM121L2 SNP Missense_Mutation 6 27278901 G A 36 59 BRCA TCGA-D8-A1JG ZSCAN12 SNP Missense_Mutation 6 28365909 C T 30 60 BRCA TCGA-D8-A1JG TFAP2D SNP Missense_Mutation 6 50740543 C T 26 72 BRCA TCGA-D8-A1JG COL12A1 SNP Silent 6 75866154 G A 37 35 BRCA TCGA-D8-A1JG OR2A12 SNP Missense_Mutation 7 143792630 G A 42 51 BRCA TCGA-D8-A1JG ABCB5 SNP Missense_Mutation 7 20778650 C T 19 94 BRCA TCGA-D8-A1JG IKZF1 SNP Missense_Mutation 7 50455095 C A 28 69 BRCA TCGA-D8-A1JG TEX15 SNP Nonsense_Mutation 8 30705357 C A 32 53 BRCA TCGA-D8-A1JG SDR16C5 SNP Silent 8 57228667 T G 51 30 BRCA TCGA-D8-A1JG TRPA1 SNP Missense_Mutation 8 72967727 C A 32 48 BRCA TCGA-D8-A1JG MATN2 SNP Missense_Mutation 8 99028810 C T 31 51 BRCA TCGA-D8-A1JG ACTL7B SNP Missense_Mutation 9 111617531 C G 18 93 BRCA TCGA-D8-A1JG ADAMTSL1 SNP Silent 9 18684727 C T 31 48 BRCA TCGA-D8-A1JG PIP5K1B SNP Silent 9 71532631 T C 58 41 BRCA TCGA-D8-A1JH DCAF6 SNP Missense_Mutation 1 167935897 G A 33 97 BRCA TCGA-D8-A1JH CPT2 SNP Missense_Mutation 1 53675969 A G 4 77 BRCA TCGA-D8-A1JH SUPT16H SNP Missense_Mutation 14 21836478 T C 49 91 BRCA TCGA-D8-A1JH CCT6B SNP Missense_Mutation 17 33281599 A G 16 84 BRCA TCGA-D8-A1JH RTTN SNP Missense_Mutation 18 67684697 T A 49 70 BRCA TCGA-D8-A1JH IRGC SNP Missense_Mutation 19 44223848 G A 38 54 BRCA TCGA-D8-A1JH SF3B1 SNP Missense_Mutation 2 198266834 T C 62 93 BRCA TCGA-D8-A1JH CASP8 SNP Missense_Mutation 2 202123066 G T 41 55 BRCA TCGA-D8-A1JH RBM39 SNP Missense_Mutation 20 34313042 T A 50 91 BRCA TCGA-D8-A1JH RASD2 SNP Silent 22 35943099 C T 23 31 BRCA TCGA-D8-A1JH ATF4 SNP Silent 22 39917837 T C 56 61 BRCA TCGA-D8-A1JH CD99 SNP Missense_Mutation 23 2641396 G A 35 55 BRCA TCGA-D8-A1JH KDM6A INS Frame_Shift_Ins 23 44922686 - A 25 64 BRCA TCGA-D8-A1JH SLC35A2 SNP Missense_Mutation 23 48761977 C A 24 66 BRCA TCGA-D8-A1JH AKAP4 SNP Silent 23 49958929 G A 38 37 BRCA TCGA-D8-A1JH PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-D8-A1JH MAP3K1 SNP Missense_Mutation 5 56184105 G C 48 94 BRCA TCGA-D8-A1JH MED23 SNP Missense_Mutation 6 131925356 T C 49 92 BRCA TCGA-D8-A1JH DGKB SNP Missense_Mutation 7 14880851 G A 37 83 BRCA TCGA-D8-A1JI CCDC19 SNP Missense_Mutation 1 159858227 C A 31 72 BRCA TCGA-D8-A1JI C1orf112 SNP Missense_Mutation 1 169770068 C A 21 60 BRCA TCGA-D8-A1JI ARID1A DEL Frame_Shift_Del 1 27087886 CCACCTC - 26 97 BRCA TCGA-D8-A1JI ARID1A DEL In_Frame_Del 1 27087894 GCCACC - 42 54 BRCA TCGA-D8-A1JI OSBPL9 SNP Missense_Mutation 1 52222005 C T 27 66 BRCA TCGA-D8-A1JI DMRTB1 SNP Silent 1 53927225 G A 40 37 BRCA TCGA-D8-A1JI PTEN INS Frame_Shift_Ins 10 89624272 - A 49 86 BRCA TCGA-D8-A1JI TECTA SNP Missense_Mutation 11 120996488 G A 47 81 BRCA TCGA-D8-A1JI IRF7 SNP Missense_Mutation 11 615281 G A 33 44 BRCA TCGA-D8-A1JI KLC2 SNP Silent 11 66033219 C T 26 50 BRCA TCGA-D8-A1JI RAB1B SNP Missense_Mutation 11 66039643 G A 33 90 BRCA TCGA-D8-A1JI PPFIA1 SNP Missense_Mutation 11 70224272 C T 32 98 BRCA TCGA-D8-A1JI SCN8A SNP Missense_Mutation 12 52188168 G A 41 100 BRCA TCGA-D8-A1JI PTPRB SNP Silent 12 70928673 C A 25 52 BRCA TCGA-D8-A1JI SPATA13 SNP Missense_Mutation 13 24860370 G T 40 66 BRCA TCGA-D8-A1JI DICER1 SNP Missense_Mutation 14 95562728 C T 25 99 BRCA TCGA-D8-A1JI VPS13C SNP Missense_Mutation 15 62283988 C T 22 96 BRCA TCGA-D8-A1JI FURIN SNP Silent 15 91422703 G A 39 34 BRCA TCGA-D8-A1JI PKD1 SNP Missense_Mutation 16 2143858 C A 28 80 BRCA TCGA-D8-A1JI TRAF7 SNP Splice_Site 16 2225153 T C 59 88 BRCA TCGA-D8-A1JI CDK3 SNP Silent 17 73998015 G A 34 54 BRCA TCGA-D8-A1JI ZNF236 SNP Nonsense_Mutation 18 74625749 C T 25 100 BRCA TCGA-D8-A1JI NEB SNP Splice_site 2 152483718 T C 60 66 BRCA TCGA-D8-A1JI WFDC2 SNP Silent 20 44108628 C T 31 28 BRCA TCGA-D8-A1JI LONRF3 SNP Missense_Mutation 23 118140133 A G 1 74 BRCA TCGA-D8-A1JI SLC25A43 SNP Missense_Mutation 23 118586830 A C 15 52 BRCA TCGA-D8-A1JI FAM122B SNP Silent 23 133923130 A G 8 59 BRCA TCGA-D8-A1JI MAGED1 SNP Missense_Mutation 23 51638615 A T 10 66 BRCA TCGA-D8-A1JI HEG1 SNP Missense_Mutation 3 124739694 T G 60 52 BRCA TCGA-D8-A1JI EXOSC7 SNP Splice_site 3 45030632 G A 41 100 BRCA TCGA-D8-A1JI CWC27 SNP Silent 5 64081367 C T 19 39 BRCA TCGA-D8-A1JI SLC17A2 INS Frame_Shift_Ins 6 25921519 - T 8 80 BRCA TCGA-D8-A1JI CCDC136 SNP Silent 7 128455958 C T 18 58 BRCA TCGA-D8-A1JI FAM188B SNP Silent 7 30876302 A G 3 51 BRCA TCGA-D8-A1JI CNTNAP3B SNP Missense_Mutation 9 43876040 C A 30 61 BRCA TCGA-D8-A1JJ PRAMEF10 SNP Silent 1 12954760 T G 56 48 BRCA TCGA-D8-A1JJ SELE SNP Silent 1 169698645 C T 32 61 BRCA TCGA-D8-A1JJ SMYD2 SNP Missense_Mutation 1 214498008 G A 45 96 BRCA TCGA-D8-A1JJ C1orf63 SNP Silent 1 25572975 C T 31 33 BRCA TCGA-D8-A1JJ MACF1 SNP Missense_Mutation 1 39895660 G A 41 55 BRCA TCGA-D8-A1JJ RLF SNP Silent 1 40697288 G A 38 52 BRCA TCGA-D8-A1JJ CTPS1 SNP Missense_Mutation 1 41473185 G A 33 93 BRCA TCGA-D8-A1JJ JUN SNP Missense_Mutation 1 59248409 C T 31 96 BRCA TCGA-D8-A1JJ CNNM1 SNP Missense_Mutation 10 101090540 G T 36 98 BRCA TCGA-D8-A1JJ APBB1IP SNP Missense_Mutation 10 26830613 G A 48 89 BRCA TCGA-D8-A1JJ GATA3 SNP Missense_Mutation 10 8106058 T G 51 92 BRCA TCGA-D8-A1JJ TSPAN14 SNP Silent 10 82249013 C T 19 39 BRCA TCGA-D8-A1JJ C11orf57 SNP Silent 11 111953459 C G 29 54 BRCA TCGA-D8-A1JJ HBG2 SNP Silent 11 5275627 A C 3 45 BRCA TCGA-D8-A1JJ MS4A4A SNP Missense_Mutation 11 60064763 G A 40 49 BRCA TCGA-D8-A1JJ DCTN2 SNP Missense_Mutation 12 57929272 C T 29 95 BRCA TCGA-D8-A1JJ ARHGEF7 SNP Silent 13 111806290 C T 25 55 BRCA TCGA-D8-A1JJ FNDC3A SNP Silent 13 49781423 G A 41 82 BRCA TCGA-D8-A1JJ TMED8 SNP Missense_Mutation 14 77818056 C A 26 55 BRCA TCGA-D8-A1JJ HERC2 SNP Missense_Mutation 15 28515846 G A 45 99 BRCA TCGA-D8-A1JJ C15orf60 SNP Missense_Mutation 15 73852248 G C 45 59 BRCA TCGA-D8-A1JJ MYH11 SNP Missense_Mutation 16 15841442 C T 26 99 BRCA TCGA-D8-A1JJ GLG1 SNP Missense_Mutation 16 74505129 T C 60 94 BRCA TCGA-D8-A1JJ NCOR1 SNP Missense_Mutation 17 15935743 G A 47 100 BRCA TCGA-D8-A1JJ RPS6KB1 SNP Missense_Mutation 17 58013897 C A 32 70 BRCA TCGA-D8-A1JJ TP53 SNP Missense_Mutation 17 7578508 C T 25 82 BRCA TCGA-D8-A1JJ AFMID SNP Missense_Mutation 17 76201787 G A 37 89 BRCA TCGA-D8-A1JJ PHLPP1 SNP Missense_Mutation 18 60646275 G A 33 96 BRCA TCGA-D8-A1JJ MYO9B SNP Silent 19 17314024 C T 26 51 BRCA TCGA-D8-A1JJ IZUMO4 SNP Missense_Mutation 19 2097595 C A 18 41 BRCA TCGA-D8-A1JJ BCAT2 SNP Nonsense_Mutation 19 49299687 G A 47 90 BRCA TCGA-D8-A1JJ ZNF677 SNP Missense_Mutation 19 53741204 C G 32 70 BRCA TCGA-D8-A1JJ KIR2DL4 SNP Missense_Mutation 19 55324735 G A 35 47 BRCA TCGA-D8-A1JJ LRP2 SNP Missense_Mutation 2 170081851 T C 49 80 BRCA TCGA-D8-A1JJ SMARCAL1 SNP Missense_Mutation 2 217285189 G A 37 87 BRCA TCGA-D8-A1JJ COL4A4 SNP Missense_Mutation 2 227924262 C T 23 74 BRCA TCGA-D8-A1JJ EHBP1 SNP Missense_Mutation 2 63217952 G A 45 85 BRCA TCGA-D8-A1JJ GPAT2 SNP Silent 2 96689146 A G 4 51 BRCA TCGA-D8-A1JJ XRN2 SNP Missense_Mutation 20 21314591 C T 23 98 BRCA TCGA-D8-A1JJ CRYZL1 SNP Missense_Mutation 21 34963501 T A 50 79 BRCA TCGA-D8-A1JJ SLC5A3 SNP Missense_Mutation 21 35467531 A G 8 64 BRCA TCGA-D8-A1JJ ZBED4 SNP Silent 22 50278870 G A 47 65 BRCA TCGA-D8-A1JJ DOCK11 SNP Missense_Mutation 23 117815153 C T 32 59 BRCA TCGA-D8-A1JJ CXorf64 SNP Missense_Mutation 23 125955390 C T 30 58 BRCA TCGA-D8-A1JJ HTATSF1 SNP Missense_Mutation 23 135582352 G A 48 79 BRCA TCGA-D8-A1JJ SLITRK4 SNP Missense_Mutation 23 142718155 T C 60 75 BRCA TCGA-D8-A1JJ REPS2 SNP Missense_Mutation 23 17024441 C T 23 93 BRCA TCGA-D8-A1JJ FAM123B SNP Silent 23 63410674 A G 8 45 BRCA TCGA-D8-A1JJ HEPH SNP Silent 23 65417628 C T 29 41 BRCA TCGA-D8-A1JJ PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-D8-A1JJ DLG1 SNP Missense_Mutation 3 196817851 C T 29 99 BRCA TCGA-D8-A1JJ SNRK SNP Missense_Mutation 3 43388879 C G 18 57 BRCA TCGA-D8-A1JJ LZTFL1 SNP Splice_Site 3 45879417 A C 14 88 BRCA TCGA-D8-A1JJ PCDHA2 SNP Silent 5 140175977 G A 39 39 BRCA TCGA-D8-A1JJ PCDHB13 SNP Missense_Mutation 5 140594357 C T 23 79 BRCA TCGA-D8-A1JJ ZFR SNP Silent 5 32403302 C T 19 46 BRCA TCGA-D8-A1JJ OSMR SNP Silent 5 38924582 G A 45 63 BRCA TCGA-D8-A1JJ CCL28 SNP Missense_Mutation 5 43382081 C T 28 52 BRCA TCGA-D8-A1JJ SCAF8 SNP Missense_Mutation 6 155143458 C G 17 74 BRCA TCGA-D8-A1JJ EZR SNP Silent 6 159188099 G A 38 42 BRCA TCGA-D8-A1JJ ZBTB12 SNP Missense_Mutation 6 31867836 C T 27 70 BRCA TCGA-D8-A1JJ SRF SNP Silent 6 43141677 G C 46 56 BRCA TCGA-D8-A1JJ ZNF425 SNP Silent 7 148800755 C T 27 9 BRCA TCGA-D8-A1JJ GTPBP10 SNP Missense_Mutation 7 89982152 T C 53 91 BRCA TCGA-D8-A1JJ ATAD2 SNP Missense_Mutation 8 124371840 C G 29 99 BRCA TCGA-D8-A1JJ KIAA1456 SNP Missense_Mutation 8 12863718 C T 29 60 BRCA TCGA-D8-A1JJ NPBWR1 SNP Missense_Mutation 8 53853440 C T 23 61 BRCA TCGA-D8-A1JJ ZFHX4 SNP Missense_Mutation 8 77767078 G A 37 100 BRCA TCGA-D8-A1JJ CCNE2 SNP Missense_Mutation 8 95905064 G A 45 94 BRCA TCGA-D8-A1JJ ADAMTSL1 SNP Missense_Mutation 9 18887969 C G 29 73 BRCA TCGA-D8-A1JJ FOCAD SNP Missense_Mutation 9 20982406 G C 45 91 BRCA TCGA-D8-A1JK KIF1B SNP Silent 1 10332316 T C 49 55 BRCA TCGA-D8-A1JK CA14 SNP Missense_Mutation 1 150234993 C A 24 67 BRCA TCGA-D8-A1JK FLG SNP Missense_Mutation 1 152286937 T A 56 46 BRCA TCGA-D8-A1JK YY1AP1 SNP Missense_Mutation 1 155649273 C T 30 75 BRCA TCGA-D8-A1JK NOS1AP SNP Missense_Mutation 1 162270466 A T 3 72 BRCA TCGA-D8-A1JK POU2F1 SNP Missense_Mutation 1 167382300 G A 39 49 BRCA TCGA-D8-A1JK MDM4 DEL Frame_Shift_Del 1 204495552 CT - 20 93 BRCA TCGA-D8-A1JK TMEM81 SNP Missense_Mutation 1 205053330 C T 22 67 BRCA TCGA-D8-A1JK NVL SNP Missense_Mutation 1 224420957 A C 9 62 BRCA TCGA-D8-A1JK DNAH14 SNP Silent 1 225488627 G A 48 53 BRCA TCGA-D8-A1JK FMN2 SNP Silent 1 240370995 G A 43 22 BRCA TCGA-D8-A1JK OR2T8 SNP Missense_Mutation 1 248084570 T C 63 65 BRCA TCGA-D8-A1JK CEP85 SNP Missense_Mutation 1 26595997 C G 20 52 BRCA TCGA-D8-A1JK ZMYM4 SNP Splice_Site 1 35851042 G A 33 84 BRCA TCGA-D8-A1JK KIAA0494 SNP Silent 1 47149000 G A 33 58 BRCA TCGA-D8-A1JK HEATR8 SNP Silent 1 55175824 G A 35 54 BRCA TCGA-D8-A1JK CHD5 SNP Missense_Mutation 1 6169975 G A 47 98 BRCA TCGA-D8-A1JK LRRC8C SNP Missense_Mutation 1 90178422 G A 42 100 BRCA TCGA-D8-A1JK CUBN SNP Missense_Mutation 10 16979758 G A 42 73 BRCA TCGA-D8-A1JK THNSL1 SNP Missense_Mutation 10 25313411 T G 49 90 BRCA TCGA-D8-A1JK ITGB1 SNP Silent 10 33218841 T C 61 40 BRCA TCGA-D8-A1JK FZD8 SNP Missense_Mutation 10 35930097 G C 41 81 BRCA TCGA-D8-A1JK GRIA4 SNP Missense_Mutation 11 105804480 G T 41 100 BRCA TCGA-D8-A1JK MARK2 DEL Frame_Shift_Del 11 63670121 AG - 7 78 BRCA TCGA-D8-A1JK CDC42EP2 SNP Missense_Mutation 11 65088527 G C 42 80 BRCA TCGA-D8-A1JK SUV420H1 SNP Splice_site 11 67947667 G A 38 64 BRCA TCGA-D8-A1JK C2CD3 SNP Nonsense_Mutation 11 73849780 T A 63 76 BRCA TCGA-D8-A1JK CLNS1A DEL Frame_Shift_Del 11 77333553 TC - 50 75 BRCA TCGA-D8-A1JK TAS2R8 SNP Silent 12 10959166 A G 5 44 BRCA TCGA-D8-A1JK TAS2R14 SNP Missense_Mutation 12 11091413 C T 18 42 BRCA TCGA-D8-A1JK TCTN1 SNP Splice_site 12 111085556 C A 21 53 BRCA TCGA-D8-A1JK TRAFD1 SNP Missense_Mutation 12 112589696 T A 49 50 BRCA TCGA-D8-A1JK TBX3 DEL Frame_Shift_Del 12 115120844 GAGCGCCGCCGCGCCGTTGGGAG - 33 52 BRCA TCGA-D8-A1JK CLIP1 DEL Frame_Shift_Del 12 122794401 TC - 62 80 BRCA TCGA-D8-A1JK HCAR3 SNP Missense_Mutation 12 123201043 G C 39 75 BRCA TCGA-D8-A1JK PDE3A SNP Missense_Mutation 12 20806958 G T 35 83 BRCA TCGA-D8-A1JK CSAD SNP Missense_Mutation 12 53567239 C A 28 53 BRCA TCGA-D8-A1JK BAZ2A SNP Missense_Mutation 12 57007800 G T 45 79 BRCA TCGA-D8-A1JK C3AR1 SNP Missense_Mutation 12 8211623 G C 33 56 BRCA TCGA-D8-A1JK A2M SNP Nonsense_Mutation 12 9221429 G A 45 51 BRCA TCGA-D8-A1JK KLRB1 DEL Frame_Shift_Del 12 9750720 AG - 7 37 BRCA TCGA-D8-A1JK RNF17 SNP Missense_Mutation 13 25399899 C G 25 77 BRCA TCGA-D8-A1JK DYNC1H1 SNP Missense_Mutation 14 102467495 T C 59 92 BRCA TCGA-D8-A1JK PCK2 SNP Missense_Mutation 14 24571997 T C 52 86 BRCA TCGA-D8-A1JK REC8 SNP Missense_Mutation 14 24648865 G A 44 49 BRCA TCGA-D8-A1JK NPAS3 SNP Missense_Mutation 14 34269012 G A 39 82 BRCA TCGA-D8-A1JK SRP54 SNP Missense_Mutation 14 35488263 A C 12 89 BRCA TCGA-D8-A1JK DAAM1 SNP Missense_Mutation 14 59789814 G C 33 64 BRCA TCGA-D8-A1JK MPP5 SNP Missense_Mutation 14 67784190 A C 1 90 BRCA TCGA-D8-A1JK VRK1 DEL Frame_Shift_Del 14 97322913 AAAC - 1 66 BRCA TCGA-D8-A1JK RYR3 SNP Missense_Mutation 15 33872205 A C 6 42 BRCA TCGA-D8-A1JK EIF2AK4 SNP Nonsense_Mutation 15 40246168 A T 9 76 BRCA TCGA-D8-A1JK C15orf44 SNP Silent 15 65871806 A G 8 44 BRCA TCGA-D8-A1JK DENND4A SNP Splice_Site 15 66022017 C T 20 100 BRCA TCGA-D8-A1JK SYNM SNP Silent 15 99673182 G A 44 59 BRCA TCGA-D8-A1JK ABCC1 SNP Silent 16 16208804 C A 30 52 BRCA TCGA-D8-A1JK HS3ST2 SNP Nonsense_Mutation 16 22926863 C T 25 97 BRCA TCGA-D8-A1JK BRD7 SNP Silent 16 50353829 G T 45 49 BRCA TCGA-D8-A1JK GPR114 SNP Missense_Mutation 16 57596304 G A 41 33 BRCA TCGA-D8-A1JK DYNC1LI2 SNP Missense_Mutation 16 66783211 C G 32 98 BRCA TCGA-D8-A1JK SLC7A5 SNP Missense_Mutation 16 87874747 G C 33 75 BRCA TCGA-D8-A1JK MYH4 SNP Silent 17 10358115 G A 33 60 BRCA TCGA-D8-A1JK NCOR1 SNP Missense_Mutation 17 16012203 C A 28 50 BRCA TCGA-D8-A1JK SYNRG SNP Missense_Mutation 17 35946532 C A 28 73 BRCA TCGA-D8-A1JK STAT3 SNP Missense_Mutation 17 40481654 A T 1 93 BRCA TCGA-D8-A1JK ACBD4 SNP Missense_Mutation 17 43220876 T C 56 48 BRCA TCGA-D8-A1JK FAM57A SNP Silent 17 641191 T A 59 43 BRCA TCGA-D8-A1JK TSEN54 SNP Silent 17 73519828 T G 55 49 BRCA TCGA-D8-A1JK TP53 SNP Splice_Site 17 7576852 C T 18 72 BRCA TCGA-D8-A1JK RNF213 SNP Missense_Mutation 17 78311392 T C 54 77 BRCA TCGA-D8-A1JK ROCK1 SNP Silent 18 18572891 A G 13 61 BRCA TCGA-D8-A1JK CABYR SNP Nonsense_Mutation 18 21739933 G T 35 68 BRCA TCGA-D8-A1JK LPIN2 SNP Missense_Mutation 18 2934386 G T 33 67 BRCA TCGA-D8-A1JK ASXL3 SNP Silent 18 31326469 C T 21 86 BRCA TCGA-D8-A1JK DLGAP1 SNP Missense_Mutation 18 3582137 C A 24 76 BRCA TCGA-D8-A1JK LAMA1 DEL In_Frame_Del 18 7011398 GTA - 44 52 BRCA TCGA-D8-A1JK ATP9B SNP Missense_Mutation 18 76974004 G A 37 91 BRCA TCGA-D8-A1JK SOGA2 SNP Silent 18 8796352 C A 30 49 BRCA TCGA-D8-A1JK RGL3 SNP Silent 19 11527722 G A 47 36 BRCA TCGA-D8-A1JK ZNF433 SNP Missense_Mutation 19 12125835 T A 64 60 BRCA TCGA-D8-A1JK KLC3 SNP Missense_Mutation 19 45851256 G A 38 90 BRCA TCGA-D8-A1JK ZNF587 SNP Missense_Mutation 19 58371291 G T 34 48 BRCA TCGA-D8-A1JK ZRANB3 SNP Missense_Mutation 2 135988317 C T 29 63 BRCA TCGA-D8-A1JK CSRNP3 SNP Missense_Mutation 2 166451648 G C 33 100 BRCA TCGA-D8-A1JK LRP2 SNP Missense_Mutation 2 170127501 C T 23 100 BRCA TCGA-D8-A1JK TTN SNP Missense_Mutation 2 179456033 T C 60 72 BRCA TCGA-D8-A1JK PIKFYVE SNP Missense_Mutation 2 209136299 G A 37 53 BRCA TCGA-D8-A1JK APOB SNP Silent 2 21231856 T C 55 41 BRCA TCGA-D8-A1JK DOCK10 SNP Missense_Mutation 2 225698925 T G 64 72 BRCA TCGA-D8-A1JK INPP5D SNP Missense_Mutation 2 234079743 G A 40 95 BRCA TCGA-D8-A1JK ANO7 SNP Missense_Mutation 2 242141634 C G 23 54 BRCA TCGA-D8-A1JK TTC7A SNP Silent 2 47233105 G A 35 50 BRCA TCGA-D8-A1JK KIAA1841 SNP Missense_Mutation 2 61361346 G T 45 48 BRCA TCGA-D8-A1JK MXD1 SNP Silent 2 70164405 C A 31 50 BRCA TCGA-D8-A1JK CTNNA2 SNP Missense_Mutation 2 80773099 T C 58 93 BRCA TCGA-D8-A1JK NCAPH SNP Missense_Mutation 2 97019092 C G 26 69 BRCA TCGA-D8-A1JK CD93 SNP Nonsense_Mutation 20 23065764 G A 47 96 BRCA TCGA-D8-A1JK GSS SNP Missense_Mutation 20 33517366 A G 14 51 BRCA TCGA-D8-A1JK ZNF217 SNP Nonsense_Mutation 20 52193275 G T 48 53 BRCA TCGA-D8-A1JK POTED DEL In_Frame_Del 21 15013685 AAG - 1 50 BRCA TCGA-D8-A1JK ADAMTS5 SNP Missense_Mutation 21 28306826 G T 46 84 BRCA TCGA-D8-A1JK FAM176C SNP Missense_Mutation 21 33887394 C T 25 76 BRCA TCGA-D8-A1JK BRWD1 SNP Missense_Mutation 21 40665795 C A 32 85 BRCA TCGA-D8-A1JK TEX33 SNP Missense_Mutation 22 37387573 T C 62 60 BRCA TCGA-D8-A1JK PASD1 SNP Missense_Mutation 23 150789492 C A 20 39 BRCA TCGA-D8-A1JK GABRQ SNP Silent 23 151821057 G A 38 34 BRCA TCGA-D8-A1JK G6PD SNP Nonsense_Mutation 23 153760236 C T 22 93 BRCA TCGA-D8-A1JK NHS SNP Missense_Mutation 23 17750232 C T 32 96 BRCA TCGA-D8-A1JK ELK1 SNP Silent 23 47500826 C T 29 54 BRCA TCGA-D8-A1JK ZNF182 SNP Silent 23 47837015 G A 39 51 BRCA TCGA-D8-A1JK ZBTB11 SNP Silent 3 101370304 G A 44 65 BRCA TCGA-D8-A1JK ALCAM DEL Frame_Shift_Del 3 105266099 AAAG - 1 69 BRCA TCGA-D8-A1JK MYH15 SNP Silent 3 108159994 C T 32 66 BRCA TCGA-D8-A1JK WDR52 SNP Missense_Mutation 3 113138991 T G 60 82 BRCA TCGA-D8-A1JK SLC12A8 SNP Missense_Mutation 3 124826747 T C 59 55 BRCA TCGA-D8-A1JK KLF15 SNP Silent 3 126071324 G A 33 69 BRCA TCGA-D8-A1JK DNAJC13 SNP Missense_Mutation 3 132245123 C A 17 98 BRCA TCGA-D8-A1JK TRIM42 SNP Missense_Mutation 3 140397328 T C 54 56 BRCA TCGA-D8-A1JK C3orf19 SNP Missense_Mutation 3 14708374 G C 38 92 BRCA TCGA-D8-A1JK IFT80 SNP Silent 3 159995153 A C 9 49 BRCA TCGA-D8-A1JK SI SNP Silent 3 164735432 A G 4 50 BRCA TCGA-D8-A1JK ZBBX SNP Missense_Mutation 3 167086345 C T 31 50 BRCA TCGA-D8-A1JK PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-D8-A1JK VPS8 SNP Silent 3 184714278 A T 13 52 BRCA TCGA-D8-A1JK C3orf70 SNP Missense_Mutation 3 184801224 A T 5 45 BRCA TCGA-D8-A1JK IL1RAP SNP Nonsense_Mutation 3 190362053 C A 17 65 BRCA TCGA-D8-A1JK PIGZ SNP Missense_Mutation 3 196675068 C T 25 82 BRCA TCGA-D8-A1JK RARB DEL Frame_Shift_Del 3 25637900 CTTTTGAAAAGGTGCAGAGCGTGTAATTA - 32 50 BRCA TCGA-D8-A1JK CYP8B1 SNP Missense_Mutation 3 42916128 G A 35 98 BRCA TCGA-D8-A1JK C3orf77 SNP Missense_Mutation 3 44373333 G A 33 57 BRCA TCGA-D8-A1JK UQCRC1 SNP Missense_Mutation 3 48637563 T C 58 77 BRCA TCGA-D8-A1JK CENPE SNP Missense_Mutation 4 104079590 C T 31 59 BRCA TCGA-D8-A1JK KIAA1109 SNP Missense_Mutation 4 123193324 G A 34 83 BRCA TCGA-D8-A1JK FAT4 SNP Missense_Mutation 4 126384757 A C 2 70 BRCA TCGA-D8-A1JK SLC10A7 SNP Missense_Mutation 4 147431152 A G 12 71 BRCA TCGA-D8-A1JK CHIC2 SNP Missense_Mutation 4 54930430 T G 58 84 BRCA TCGA-D8-A1JK AMBN SNP Missense_Mutation 4 71462727 G T 34 54 BRCA TCGA-D8-A1JK APC SNP Missense_Mutation 5 112175102 T A 64 91 BRCA TCGA-D8-A1JK NMUR2 SNP Silent 5 151784140 G A 35 52 BRCA TCGA-D8-A1JK KIF4B SNP Missense_Mutation 5 154394120 C A 30 83 BRCA TCGA-D8-A1JK C7 SNP Missense_Mutation 5 40972659 G C 41 86 BRCA TCGA-D8-A1JK CCDC125 SNP Silent 5 68616155 T C 56 43 BRCA TCGA-D8-A1JK ASCC3 SNP Missense_Mutation 6 101075523 A T 3 92 BRCA TCGA-D8-A1JK ASCC3 SNP Missense_Mutation 6 101075570 A C 9 93 BRCA TCGA-D8-A1JK SYTL3 SNP Missense_Mutation 6 159103965 A G 1 62 BRCA TCGA-D8-A1JK FNDC1 SNP Missense_Mutation 6 159660774 C T 18 71 BRCA TCGA-D8-A1JK WRNIP1 SNP Missense_Mutation 6 2769106 A C 1 90 BRCA TCGA-D8-A1JK BRD2 DEL In_Frame_Del 6 32945699 GAG - 45 73 BRCA TCGA-D8-A1JK ITPR3 SNP Missense_Mutation 6 33654276 G C 41 75 BRCA TCGA-D8-A1JK MED20 SNP Splice_Site 6 41877006 C A 18 100 BRCA TCGA-D8-A1JK GPR115 SNP Missense_Mutation 6 47686162 T C 51 72 BRCA TCGA-D8-A1JK DST SNP Missense_Mutation 6 56471604 T G 53 57 BRCA TCGA-D8-A1JK EYS DEL Frame_Shift_Del 6 66115227 AC - 2 53 BRCA TCGA-D8-A1JK UFL1 SNP Missense_Mutation 6 96999374 C G 20 57 BRCA TCGA-D8-A1JK PLXNA4 SNP Missense_Mutation 7 132192921 T C 63 65 BRCA TCGA-D8-A1JK ADCK2 SNP Silent 7 140373340 C T 30 45 BRCA TCGA-D8-A1JK SEPT14 SNP Missense_Mutation 7 55912240 C T 18 88 BRCA TCGA-D8-A1JK KCNK9 SNP Missense_Mutation 8 140715163 C A 19 88 BRCA TCGA-D8-A1JK CSMD1 SNP Nonsense_Mutation 8 3265702 G T 45 100 BRCA TCGA-D8-A1JK ADAM9 SNP Silent 8 38961171 T A 62 62 BRCA TCGA-D8-A1JK RB1CC1 SNP Silent 8 53548623 A G 16 53 BRCA TCGA-D8-A1JK ARMC1 DEL Frame_Shift_Del 8 66525619 TG - 51 69 BRCA TCGA-D8-A1JK ZFHX4 SNP Missense_Mutation 8 77761899 C T 19 97 BRCA TCGA-D8-A1JK ZFHX4 SNP Silent 8 77775820 C T 32 55 BRCA TCGA-D8-A1JK EPB41L4B SNP Missense_Mutation 9 112018071 C T 18 100 BRCA TCGA-D8-A1JK ZNF618 SNP Missense_Mutation 9 116812343 G C 39 97 BRCA TCGA-D8-A1JK TNC SNP Missense_Mutation 9 117836049 C T 27 83 BRCA TCGA-D8-A1JK C5 SNP Silent 9 123731362 G A 48 55 BRCA TCGA-D8-A1JK MPDZ SNP Silent 9 13222406 G A 45 58 BRCA TCGA-D8-A1JK PRRC2B SNP Missense_Mutation 9 134350103 G A 45 76 BRCA TCGA-D8-A1JK RALGDS SNP Nonsense_Mutation 9 136031465 G T 42 48 BRCA TCGA-D8-A1JK RFX3 SNP Silent 9 3225066 T C 55 43 BRCA TCGA-D8-A1JK KDM4C SNP Missense_Mutation 9 6986428 T A 49 43 BRCA TCGA-D8-A1JK AGTPBP1 SNP Splice_site 9 88272558 T G 62 71 BRCA TCGA-D8-A1JL VCAM1 SNP Silent 1 101190442 T A 62 62 BRCA TCGA-D8-A1JL WNT2B SNP Missense_Mutation 1 113057692 G A 40 99 BRCA TCGA-D8-A1JL MOV10 SNP Missense_Mutation 1 113232573 G A 42 54 BRCA TCGA-D8-A1JL FLG SNP Missense_Mutation 1 152279767 G A 37 53 BRCA TCGA-D8-A1JL FHAD1 SNP Missense_Mutation 1 15687065 A C 11 72 BRCA TCGA-D8-A1JL AXDND1 SNP Silent 1 179335674 G T 38 46 BRCA TCGA-D8-A1JL UBR4 SNP Silent 1 19494604 A C 11 47 BRCA TCGA-D8-A1JL CFH SNP Missense_Mutation 1 196643014 C A 20 52 BRCA TCGA-D8-A1JL LMOD1 SNP Missense_Mutation 1 201868906 A G 11 54 BRCA TCGA-D8-A1JL CR1 SNP Silent 1 207697077 G A 35 52 BRCA TCGA-D8-A1JL PARP1 SNP Missense_Mutation 1 226579990 G T 46 55 BRCA TCGA-D8-A1JL URB2 SNP Missense_Mutation 1 229771028 G A 42 54 BRCA TCGA-D8-A1JL CDC20 SNP Missense_Mutation 1 43828729 C G 22 73 BRCA TCGA-D8-A1JL KIAA0494 SNP Splice_Site 1 47154023 A C 14 76 BRCA TCGA-D8-A1JL LRRC7 SNP Silent 1 70225882 C T 24 74 BRCA TCGA-D8-A1JL C1orf173 SNP Silent 1 75037347 C A 23 27 BRCA TCGA-D8-A1JL ZNF644 SNP Missense_Mutation 1 91383613 A T 8 90 BRCA TCGA-D8-A1JL ABLIM1 SNP Silent 10 116233707 C T 30 65 BRCA TCGA-D8-A1JL KAT6B SNP Missense_Mutation 10 76735881 C G 31 67 BRCA TCGA-D8-A1JL CDHR1 SNP Silent 10 85970822 C G 30 53 BRCA TCGA-D8-A1JL FAM25A SNP Silent 10 88784395 C T 22 53 BRCA TCGA-D8-A1JL KLLN DEL In_Frame_Del 10 89621990 GCCTCCGGA - 46 53 BRCA TCGA-D8-A1JL C11orf88 SNP Silent 11 111385611 C G 21 50 BRCA TCGA-D8-A1JL HYOU1 SNP Missense_Mutation 11 118926221 T C 58 88 BRCA TCGA-D8-A1JL OR6T1 SNP Missense_Mutation 11 123813968 T C 59 40 BRCA TCGA-D8-A1JL OR10G9 SNP Missense_Mutation 11 123894114 C A 18 54 BRCA TCGA-D8-A1JL SNX32 SNP Missense_Mutation 11 65620233 G A 37 81 BRCA TCGA-D8-A1JL FUT4 SNP Silent 11 94278568 C A 23 19 BRCA TCGA-D8-A1JL SLC17A8 SNP Nonsense_Mutation 12 100796149 G A 42 100 BRCA TCGA-D8-A1JL TAOK3 SNP Missense_Mutation 12 118615098 G T 46 100 BRCA TCGA-D8-A1JL KNTC1 SNP Missense_Mutation 12 123107016 G C 36 50 BRCA TCGA-D8-A1JL DNAH10 DEL Frame_Shift_Del 12 124402297 GAACA - 41 42 BRCA TCGA-D8-A1JL RIMBP2 SNP Splice_Site 12 130941040 C G 18 91 BRCA TCGA-D8-A1JL TWF1 SNP Missense_Mutation 12 44191587 A G 14 93 BRCA TCGA-D8-A1JL DYRK4 SNP Missense_Mutation 12 4721739 C A 18 47 BRCA TCGA-D8-A1JL MCF2L SNP Missense_Mutation 13 113742701 C G 21 79 BRCA TCGA-D8-A1JL NBEA SNP Missense_Mutation 13 35770032 A T 3 54 BRCA TCGA-D8-A1JL RNASE7 SNP Silent 14 21511331 G A 34 47 BRCA TCGA-D8-A1JL TGFB3 SNP Silent 14 76446997 C A 21 65 BRCA TCGA-D8-A1JL ANGEL1 SNP Missense_Mutation 14 77274333 G C 41 67 BRCA TCGA-D8-A1JL UNC79 SNP Silent 14 94088952 C A 23 36 BRCA TCGA-D8-A1JL BCL11B SNP Missense_Mutation 14 99640525 G T 36 98 BRCA TCGA-D8-A1JL EIF2AK4 SNP Missense_Mutation 15 40308734 A C 3 79 BRCA TCGA-D8-A1JL ADAMTSL3 SNP Silent 15 84651456 T C 64 56 BRCA TCGA-D8-A1JL CHD2 SNP Missense_Mutation 15 93540500 G A 40 83 BRCA TCGA-D8-A1JL DNAH3 SNP Missense_Mutation 16 20970646 T C 49 57 BRCA TCGA-D8-A1JL PABPN1L SNP Missense_Mutation 16 88932941 G T 35 61 BRCA TCGA-D8-A1JL MYH8 SNP Missense_Mutation 17 10300124 T C 58 91 BRCA TCGA-D8-A1JL SHISA6 SNP Silent 17 11166794 G T 40 35 BRCA TCGA-D8-A1JL SLC13A2 SNP Silent 17 26818766 C A 25 51 BRCA TCGA-D8-A1JL KRT20 SNP Missense_Mutation 17 39034526 G T 42 44 BRCA TCGA-D8-A1JL RAB37 SNP Splice_site 17 72725505 G A 39 48 BRCA TCGA-D8-A1JL TP53 SNP Missense_Mutation 17 7578271 T A 51 76 BRCA TCGA-D8-A1JL CDH7 SNP Missense_Mutation 18 63476962 G C 41 99 BRCA TCGA-D8-A1JL ZNF682 SNP Nonsense_Mutation 19 20117638 C A 21 79 BRCA TCGA-D8-A1JL MBD3L1 SNP Missense_Mutation 19 8953820 A C 9 58 BRCA TCGA-D8-A1JL ARHGAP15 SNP Missense_Mutation 2 144314050 C A 18 72 BRCA TCGA-D8-A1JL SCN2A SNP Missense_Mutation 2 166245597 A T 8 93 BRCA TCGA-D8-A1JL UBR3 SNP Missense_Mutation 2 170751798 A G 8 86 BRCA TCGA-D8-A1JL RAD51AP2 SNP Missense_Mutation 2 17696790 T C 62 77 BRCA TCGA-D8-A1JL DNAH7 SNP Silent 2 196723282 G A 45 52 BRCA TCGA-D8-A1JL HECW2 SNP Missense_Mutation 2 197081766 C A 32 100 BRCA TCGA-D8-A1JL PLCL1 SNP Missense_Mutation 2 198949886 G C 33 57 BRCA TCGA-D8-A1JL MAP2 SNP Missense_Mutation 2 210565003 G A 34 54 BRCA TCGA-D8-A1JL BIRC6 SNP Missense_Mutation 2 32743984 C T 17 83 BRCA TCGA-D8-A1JL SPTBN1 SNP Nonsense_Mutation 2 54870174 G T 45 88 BRCA TCGA-D8-A1JL KDM3A SNP Missense_Mutation 2 86718115 C G 29 97 BRCA TCGA-D8-A1JL MYT1 SNP Missense_Mutation 20 62871224 C A 21 88 BRCA TCGA-D8-A1JL TMPRSS15 SNP Silent 21 19666941 G T 37 60 BRCA TCGA-D8-A1JL SERPIND1 SNP Silent 22 21134011 C T 32 35 BRCA TCGA-D8-A1JL IDS SNP Silent 23 148568556 T G 49 54 BRCA TCGA-D8-A1JL GPR174 SNP Silent 23 78427212 A G 7 42 BRCA TCGA-D8-A1JL LPP SNP Silent 3 188584023 C G 21 59 BRCA TCGA-D8-A1JL CCDC50 SNP Silent 3 191093233 C T 21 46 BRCA TCGA-D8-A1JL STT3B SNP Missense_Mutation 3 31665175 G A 36 100 BRCA TCGA-D8-A1JL CCRL2 SNP Missense_Mutation 3 46450435 G A 38 92 BRCA TCGA-D8-A1JL CENPE SNP Missense_Mutation 4 104061038 C G 28 54 BRCA TCGA-D8-A1JL SORBS2 DEL Frame_Shift_Del 4 186598448 GGTAGAAATCCTCCGAGTTTGAGAATCTT - 35 56 BRCA TCGA-D8-A1JL CDS1 SNP Missense_Mutation 4 85538784 A T 16 92 BRCA TCGA-D8-A1JL ARHGAP24 SNP Missense_Mutation 4 86844830 C T 29 100 BRCA TCGA-D8-A1JL DNAH5 SNP Silent 5 13735385 G A 37 16 BRCA TCGA-D8-A1JL PCDHB1 SNP Missense_Mutation 5 140431880 A T 3 48 BRCA TCGA-D8-A1JL IL6ST SNP Nonsense_Mutation 5 55237584 C A 30 93 BRCA TCGA-D8-A1JL GCNT2 SNP Splice_site 6 10557574 A T 7 81 BRCA TCGA-D8-A1JL SLC2A12 SNP Silent 6 134350198 G A 35 48 BRCA TCGA-D8-A1JL SMOC2 SNP Missense_Mutation 6 169053662 C G 24 96 BRCA TCGA-D8-A1JL HLA-C SNP Silent 6 31239446 G A 48 65 BRCA TCGA-D8-A1JL WNT2 SNP Silent 7 116955248 A G 6 51 BRCA TCGA-D8-A1JL KCND2 SNP Missense_Mutation 7 119915360 A G 16 80 BRCA TCGA-D8-A1JL CPED1 SNP Missense_Mutation 7 120740066 C T 19 80 BRCA TCGA-D8-A1JL CPED1 SNP Missense_Mutation 7 120935519 A T 9 68 BRCA TCGA-D8-A1JL GRM8 SNP Nonsense_Mutation 7 126079180 G C 45 93 BRCA TCGA-D8-A1JL SVOPL SNP Missense_Mutation 7 138363783 G T 44 54 BRCA TCGA-D8-A1JL RAB19 SNP Missense_Mutation 7 140110775 C A 17 64 BRCA TCGA-D8-A1JL ARHGEF35 SNP Missense_Mutation 7 143884086 G T 33 64 BRCA TCGA-D8-A1JL PAXIP1 SNP Splice_Site 7 154753359 C G 32 96 BRCA TCGA-D8-A1JL HOXA13 SNP Silent 7 27238809 C G 27 56 BRCA TCGA-D8-A1JL CPVL SNP Missense_Mutation 7 29135737 C A 17 65 BRCA TCGA-D8-A1JL RPL8 INS Frame_Shift_Ins 8 146016828 - GG 63 51 BRCA TCGA-D8-A1JL POLR3D SNP Missense_Mutation 8 22106154 C G 28 49 BRCA TCGA-D8-A1JL RHOBTB2 SNP Silent 8 22862905 C T 19 49 BRCA TCGA-D8-A1JL CSMD1 SNP Missense_Mutation 8 3224613 T C 55 90 BRCA TCGA-D8-A1JL ARFGEF1 SNP Missense_Mutation 8 68123739 T C 55 55 BRCA TCGA-D8-A1JL ZNF705G SNP Silent 8 7217781 T A 49 60 BRCA TCGA-D8-A1JL TMEM245 SNP Missense_Mutation 9 111812873 G T 35 87 BRCA TCGA-D8-A1JL FBXO10 SNP Missense_Mutation 9 37521593 C G 29 94 BRCA TCGA-D8-A1JL SHB SNP Missense_Mutation 9 37948743 T G 59 85 BRCA TCGA-D8-A1JL KIF27 SNP Missense_Mutation 9 86514613 A G 14 57 BRCA TCGA-D8-A1JM PRAMEF16 DNP Missense_Mutation 1 13497591 AA GG 9 43 BRCA TCGA-D8-A1JM YY1AP1 SNP Missense_Mutation 1 155630341 T C 52 55 BRCA TCGA-D8-A1JM INSRR SNP Missense_Mutation 1 156812974 C T 23 79 BRCA TCGA-D8-A1JM TNR SNP Missense_Mutation 1 175355251 C T 23 96 BRCA TCGA-D8-A1JM OR2T10 SNP Missense_Mutation 1 248756685 G T 41 86 BRCA TCGA-D8-A1JM HDAC1 SNP Silent 1 32796496 G T 39 43 BRCA TCGA-D8-A1JM HECTD3 SNP Missense_Mutation 1 45475092 T C 49 74 BRCA TCGA-D8-A1JM FRMD4A SNP Silent 10 13699219 C T 23 37 BRCA TCGA-D8-A1JM EXOC6 SNP Missense_Mutation 10 94679793 A G 8 82 BRCA TCGA-D8-A1JM KRT81 INS Frame_Shift_Ins 12 52682214 - T 20 47 BRCA TCGA-D8-A1JM NEUROD4 SNP Nonsense_Mutation 12 55420713 C T 29 97 BRCA TCGA-D8-A1JM CLEC4C SNP Silent 12 7894054 T A 63 51 BRCA TCGA-D8-A1JM ALPK3 SNP Missense_Mutation 15 85370755 A C 10 84 BRCA TCGA-D8-A1JM SLC5A11 SNP Missense_Mutation 16 24921651 C T 31 62 BRCA TCGA-D8-A1JM APOBR SNP Silent 16 28506485 G A 38 29 BRCA TCGA-D8-A1JM MYH1 SNP Missense_Mutation 17 10419585 C A 29 100 BRCA TCGA-D8-A1JM COASY SNP Missense_Mutation 17 40714971 C A 26 83 BRCA TCGA-D8-A1JM CNTNAP1 DNP Missense_Mutation 17 40847798 CT GG 32 51 BRCA TCGA-D8-A1JM KIF2B SNP Silent 17 51900535 G A 39 29 BRCA TCGA-D8-A1JM CA4 SNP Nonstop_Mutation 17 58235472 T C 53 37 BRCA TCGA-D8-A1JM STK11 SNP Nonsense_Mutation 19 1218492 C T 25 93 BRCA TCGA-D8-A1JM LPAR2 SNP Silent 19 19735340 G A 36 65 BRCA TCGA-D8-A1JM ZNF548 SNP Missense_Mutation 19 57911168 G T 48 39 BRCA TCGA-D8-A1JM XAB2 SNP Silent 19 7688749 C G 25 49 BRCA TCGA-D8-A1JM COL4A3 SNP Silent 2 228163516 A G 6 47 BRCA TCGA-D8-A1JM TCF7L1 SNP Missense_Mutation 2 85536554 C G 24 78 BRCA TCGA-D8-A1JM VSTM2L SNP Nonsense_Mutation 20 36572460 C T 19 60 BRCA TCGA-D8-A1JM RALGAPB SNP Silent 20 37177429 A T 5 50 BRCA TCGA-D8-A1JM TOX2 SNP Missense_Mutation 20 42683073 C T 23 26 BRCA TCGA-D8-A1JM LAMA5 SNP Missense_Mutation 20 60886769 G T 39 60 BRCA TCGA-D8-A1JM MYT1 DEL In_Frame_Del 20 62863610 GCA - 42 58 BRCA TCGA-D8-A1JM USP25 SNP Silent 21 17242407 G A 41 50 BRCA TCGA-D8-A1JM PIWIL3 SNP Missense_Mutation 22 25131779 C A 26 77 BRCA TCGA-D8-A1JM CD99L2 SNP Silent 23 149999738 C T 21 71 BRCA TCGA-D8-A1JM BCAP31 SNP Splice_site 23 152986328 G A 37 43 BRCA TCGA-D8-A1JM NLGN1 SNP Nonsense_Mutation 3 173322406 C A 25 73 BRCA TCGA-D8-A1JM NBEAL2 SNP Missense_Mutation 3 47045665 G A 37 96 BRCA TCGA-D8-A1JM ZMYND10 SNP Missense_Mutation 3 50379059 C G 20 54 BRCA TCGA-D8-A1JM CSNK1G3 SNP Nonsense_Mutation 5 122881422 C A 31 67 BRCA TCGA-D8-A1JM TRDN SNP Missense_Mutation 6 123892166 C T 28 76 BRCA TCGA-D8-A1JM FRMD1 SNP Missense_Mutation 6 168462600 G A 40 73 BRCA TCGA-D8-A1JM DACT2 SNP Missense_Mutation 6 168709386 C T 31 62 BRCA TCGA-D8-A1JM WDR27 SNP Missense_Mutation 6 170070709 C A 17 49 BRCA TCGA-D8-A1JM PLXNA4 SNP Silent 7 132193405 G T 45 50 BRCA TCGA-D8-A1JM LUC7L2 SNP Missense_Mutation 7 139094326 G C 34 56 BRCA TCGA-D8-A1JM NOS3 SNP Missense_Mutation 7 150697610 G T 41 95 BRCA TCGA-D8-A1JM CHD7 SNP Silent 8 61777880 T A 55 59 BRCA TCGA-D8-A1JM CHMP4C SNP Missense_Mutation 8 82670443 C T 23 55 BRCA TCGA-D8-A1JM ADAMTSL1 SNP Splice_site 9 18892387 G T 44 59 BRCA TCGA-D8-A1JM NFX1 SNP Missense_Mutation 9 33364082 G T 36 73 BRCA TCGA-D8-A1JN UBIAD1 SNP Missense_Mutation 1 11345847 G A 37 94 BRCA TCGA-D8-A1JN MAGI3 SNP Silent 1 114165576 G A 45 51 BRCA TCGA-D8-A1JN CSDE1 SNP Silent 1 115284280 C T 32 67 BRCA TCGA-D8-A1JN SV2A SNP Missense_Mutation 1 149885119 C T 29 98 BRCA TCGA-D8-A1JN MCL1 SNP Missense_Mutation 1 150550932 C T 31 73 BRCA TCGA-D8-A1JN SNX27 SNP Silent 1 151630881 A T 12 46 BRCA TCGA-D8-A1JN KIRREL SNP Missense_Mutation 1 158054238 G A 39 82 BRCA TCGA-D8-A1JN OR10Z1 SNP Missense_Mutation 1 158576979 C T 29 83 BRCA TCGA-D8-A1JN SPTA1 SNP Missense_Mutation 1 158615335 C T 30 93 BRCA TCGA-D8-A1JN GORAB SNP Missense_Mutation 1 170508363 C T 21 85 BRCA TCGA-D8-A1JN PRRC2C SNP Missense_Mutation 1 171527054 C G 29 84 BRCA TCGA-D8-A1JN PPP1R12B SNP Silent 1 202418189 C A 32 48 BRCA TCGA-D8-A1JN TLR5 SNP Silent 1 223284238 G C 45 48 BRCA TCGA-D8-A1JN ACBD3 SNP Missense_Mutation 1 226334330 C G 32 100 BRCA TCGA-D8-A1JN TAF5L SNP Silent 1 229738611 G A 33 75 BRCA TCGA-D8-A1JN CSMD2 SNP Missense_Mutation 1 34006792 C A 32 76 BRCA TCGA-D8-A1JN GRIK3 SNP Silent 1 37267521 G A 45 70 BRCA TCGA-D8-A1JN SZT2 SNP Missense_Mutation 1 43892848 C T 29 79 BRCA TCGA-D8-A1JN TESK2 SNP Silent 1 45821062 A T 7 52 BRCA TCGA-D8-A1JN RPF1 SNP Silent 1 84945165 C T 29 79 BRCA TCGA-D8-A1JN FAM175B SNP Missense_Mutation 10 126523424 G A 45 74 BRCA TCGA-D8-A1JN EGR2 SNP Missense_Mutation 10 64573125 C T 32 83 BRCA TCGA-D8-A1JN GATA3 INS Frame_Shift_Ins 10 8115717 - CTATG 10 76 BRCA TCGA-D8-A1JN NOC3L SNP Splice_Site 10 96106314 C A 32 96 BRCA TCGA-D8-A1JN MUC2 SNP Silent 11 1101059 C T 32 48 BRCA TCGA-D8-A1JN TMPRSS5 SNP Silent 11 113563803 G C 45 57 BRCA TCGA-D8-A1JN APLP2 SNP Silent 11 129993538 C T 24 69 BRCA TCGA-D8-A1JN SLC43A1 SNP Silent 11 57263539 G A 37 0 BRCA TCGA-D8-A1JN OR5B12 SNP Missense_Mutation 11 58207576 C T 29 49 BRCA TCGA-D8-A1JN MPEG1 SNP Missense_Mutation 11 58980260 C A 30 48 BRCA TCGA-D8-A1JN STX3 SNP Missense_Mutation 11 59559682 G A 37 97 BRCA TCGA-D8-A1JN INCENP SNP Silent 11 61897585 C T 32 56 BRCA TCGA-D8-A1JN INCENP SNP Missense_Mutation 11 61897900 C G 29 54 BRCA TCGA-D8-A1JN GANAB SNP Missense_Mutation 11 62398569 G C 45 53 BRCA TCGA-D8-A1JN SLC22A25 SNP Nonsense_Mutation 11 62996883 G C 45 63 BRCA TCGA-D8-A1JN TPP1 SNP Missense_Mutation 11 6637688 G A 45 64 BRCA TCGA-D8-A1JN SYTL2 SNP Nonsense_Mutation 11 85435306 G A 45 60 BRCA TCGA-D8-A1JN KCTD10 SNP Missense_Mutation 12 109889615 C T 30 98 BRCA TCGA-D8-A1JN DDX54 SNP Missense_Mutation 12 113599116 C T 31 60 BRCA TCGA-D8-A1JN RAB35 SNP Missense_Mutation 12 120541722 G C 45 72 BRCA TCGA-D8-A1JN ESPL1 SNP Nonsense_Mutation 12 53680434 C G 29 62 BRCA TCGA-D8-A1JN SHMT2 SNP Missense_Mutation 12 57626352 G A 45 66 BRCA TCGA-D8-A1JN CHD4 SNP Missense_Mutation 12 6701207 T A 51 89 BRCA TCGA-D8-A1JN CHD4 SNP Splice_Site 12 6715439 C T 18 67 BRCA TCGA-D8-A1JN CPSF6 SNP Missense_Mutation 12 69656307 C T 27 61 BRCA TCGA-D8-A1JN PTPRB SNP Missense_Mutation 12 70989934 C T 29 58 BRCA TCGA-D8-A1JN TMCC3 SNP Missense_Mutation 12 94972209 C G 24 72 BRCA TCGA-D8-A1JN ING1 SNP Silent 13 111371874 C T 21 35 BRCA TCGA-D8-A1JN PARP4 SNP Missense_Mutation 13 25049681 C T 30 72 BRCA TCGA-D8-A1JN CDK8 SNP Splice_site 13 26967647 G A 35 98 BRCA TCGA-D8-A1JN MTUS2 SNP Silent 13 29599120 G A 45 52 BRCA TCGA-D8-A1JN SPG20 SNP Silent 13 36886556 C T 32 70 BRCA TCGA-D8-A1JN FREM2 SNP Missense_Mutation 13 39438637 T A 62 92 BRCA TCGA-D8-A1JN SLC15A1 SNP Silent 13 99338507 C T 29 62 BRCA TCGA-D8-A1JN DOCK9 SNP Missense_Mutation 13 99460049 C G 32 97 BRCA TCGA-D8-A1JN IGHD SNP Silent 14 106308334 C T 32 52 BRCA TCGA-D8-A1JN FOXA1 SNP Missense_Mutation 14 38061347 C A 26 93 BRCA TCGA-D8-A1JN FSCB SNP Missense_Mutation 14 44975125 C T 29 54 BRCA TCGA-D8-A1JN MDGA2 SNP Missense_Mutation 14 47389259 C A 29 62 BRCA TCGA-D8-A1JN CDKL1 SNP Missense_Mutation 14 50862466 C T 29 95 BRCA TCGA-D8-A1JN ZFP106 SNP Missense_Mutation 15 42743279 C G 29 49 BRCA TCGA-D8-A1JN DUOX2 SNP Missense_Mutation 15 45398520 C T 30 92 BRCA TCGA-D8-A1JN RPS27L SNP Missense_Mutation 15 63447802 G A 33 59 BRCA TCGA-D8-A1JN HERC1 SNP Missense_Mutation 15 64010840 C T 31 100 BRCA TCGA-D8-A1JN SLC24A1 SNP Silent 15 65946274 C T 32 65 BRCA TCGA-D8-A1JN PARP6 SNP Nonsense_Mutation 15 72552860 G A 45 81 BRCA TCGA-D8-A1JN TMC5 SNP Missense_Mutation 16 19477531 C G 18 58 BRCA TCGA-D8-A1JN PRKCB SNP Missense_Mutation 16 24166032 G A 33 87 BRCA TCGA-D8-A1JN ZNF629 SNP Missense_Mutation 16 30795272 G A 47 65 BRCA TCGA-D8-A1JN ITGAD SNP Missense_Mutation 16 31408729 C T 19 49 BRCA TCGA-D8-A1JN ADCY9 SNP Missense_Mutation 16 4015811 C T 31 78 BRCA TCGA-D8-A1JN TAT SNP Silent 16 71602632 G A 41 66 BRCA TCGA-D8-A1JN RBFOX1 SNP Silent 16 7568361 G C 37 50 BRCA TCGA-D8-A1JN ANKRD11 SNP Missense_Mutation 16 89341577 G A 38 75 BRCA TCGA-D8-A1JN USP7 SNP Missense_Mutation 16 8988916 C T 30 100 BRCA TCGA-D8-A1JN NF1 SNP Nonsense_Mutation 17 29527590 C T 29 99 BRCA TCGA-D8-A1JN EFCAB3 SNP Missense_Mutation 17 60447652 G T 45 49 BRCA TCGA-D8-A1JN TMC6 SNP Silent 17 76117099 G A 33 53 BRCA TCGA-D8-A1JN EMR3 SNP Silent 19 14749063 G C 45 76 BRCA TCGA-D8-A1JN CPAMD8 SNP Silent 19 17015307 G A 33 55 BRCA TCGA-D8-A1JN ZNF681 SNP Missense_Mutation 19 23928047 C T 32 52 BRCA TCGA-D8-A1JN ACTN4 SNP Missense_Mutation 19 39207792 G A 41 81 BRCA TCGA-D8-A1JN ZNF780B SNP Missense_Mutation 19 40540443 G A 45 64 BRCA TCGA-D8-A1JN B3GNT8 SNP Missense_Mutation 19 41931969 C T 19 94 BRCA TCGA-D8-A1JN ANKRD24 DEL Frame_Shift_Del 19 4224161 ACAG - 14 74 BRCA TCGA-D8-A1JN ARHGAP35 SNP Missense_Mutation 19 47425022 G C 33 64 BRCA TCGA-D8-A1JN ZNF114 SNP Missense_Mutation 19 48789311 G C 33 50 BRCA TCGA-D8-A1JN PPFIA3 SNP Missense_Mutation 19 49637900 C T 30 77 BRCA TCGA-D8-A1JN CCDC155 SNP Splice_site 19 49912287 G A 45 65 BRCA TCGA-D8-A1JN IRF3 SNP Missense_Mutation 19 50164064 C T 30 76 BRCA TCGA-D8-A1JN ZNF766 SNP Missense_Mutation 19 52793484 C T 31 47 BRCA TCGA-D8-A1JN INSR SNP Missense_Mutation 19 7166387 C T 23 80 BRCA TCGA-D8-A1JN EVI5L SNP Silent 19 7917980 G A 33 71 BRCA TCGA-D8-A1JN MUC16 SNP Missense_Mutation 19 9086981 C T 32 51 BRCA TCGA-D8-A1JN OR7D4 SNP Silent 19 9325094 G T 33 55 BRCA TCGA-D8-A1JN ZNF266 SNP Silent 19 9524224 G A 38 47 BRCA TCGA-D8-A1JN ZNF121 SNP Missense_Mutation 19 9677557 G A 45 47 BRCA TCGA-D8-A1JN LIMS1 SNP Silent 2 109276172 C T 31 50 BRCA TCGA-D8-A1JN ZC3H6 SNP Missense_Mutation 2 113089006 C G 32 54 BRCA TCGA-D8-A1JN THSD7B SNP Missense_Mutation 2 138000073 C T 22 85 BRCA TCGA-D8-A1JN TTN SNP Missense_Mutation 2 179499240 C G 29 81 BRCA TCGA-D8-A1JN TTN SNP Missense_Mutation 2 179649010 C G 32 86 BRCA TCGA-D8-A1JN ALS2CR11 SNP Silent 2 202410312 C T 31 42 BRCA TCGA-D8-A1JN FN1 SNP Missense_Mutation 2 216284067 C T 21 100 BRCA TCGA-D8-A1JN IRS1 SNP Missense_Mutation 2 227661256 C T 29 53 BRCA TCGA-D8-A1JN PCYOX1 SNP Missense_Mutation 2 70486522 C T 29 98 BRCA TCGA-D8-A1JN POLR1A SNP Silent 2 86260895 C G 29 57 BRCA TCGA-D8-A1JN E2F1 INS Frame_Shift_Ins 20 32267771 - A 41 85 BRCA TCGA-D8-A1JN ADAM33 SNP Missense_Mutation 20 3654437 C T 23 56 BRCA TCGA-D8-A1JN ALG12 DEL Splice_Site 22 50301366 CA - 29 68 BRCA TCGA-D8-A1JN FAM162A SNP Missense_Mutation 3 122121674 G C 45 49 BRCA TCGA-D8-A1JN SEMA5B SNP Missense_Mutation 3 122667367 G T 44 44 BRCA TCGA-D8-A1JN IFT122 SNP Silent 3 129183529 C A 29 77 BRCA TCGA-D8-A1JN IQSEC1 SNP Silent 3 12977058 G A 45 57 BRCA TCGA-D8-A1JN DBR1 SNP Missense_Mutation 3 137886069 G C 33 82 BRCA TCGA-D8-A1JN PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-D8-A1JN AMIGO3 SNP Silent 3 49755912 G A 37 48 BRCA TCGA-D8-A1JN TBC1D23 SNP Silent 3 99979901 G C 37 54 BRCA TCGA-D8-A1JN BANK1 SNP Missense_Mutation 4 102839158 T G 64 51 BRCA TCGA-D8-A1JN SLC34A2 SNP Silent 4 25671395 C T 29 51 BRCA TCGA-D8-A1JN CEP120 SNP Nonsense_Mutation 5 122714068 C A 30 76 BRCA TCGA-D8-A1JN PCDHGA2 SNP Missense_Mutation 5 140719585 G A 45 46 BRCA TCGA-D8-A1JN ERGIC1 SNP Silent 5 172324039 C T 32 54 BRCA TCGA-D8-A1JN NIPBL DEL Frame_Shift_Del 5 37026381 CAATGACAAAGAAG - 17 52 BRCA TCGA-D8-A1JN LIFR SNP Nonsense_Mutation 5 38490331 G A 45 88 BRCA TCGA-D8-A1JN MEF2C SNP Silent 5 88056820 C T 32 82 BRCA TCGA-D8-A1JN ARSK SNP Missense_Mutation 5 94936613 G C 33 63 BRCA TCGA-D8-A1JN PCSK1 SNP Silent 5 95744025 C T 31 22 BRCA TCGA-D8-A1JN NUS1 SNP Missense_Mutation 6 117997186 C G 27 92 BRCA TCGA-D8-A1JN RNF182 SNP Missense_Mutation 6 13977702 C G 32 74 BRCA TCGA-D8-A1JN BRPF3 SNP Silent 6 36181964 C G 32 53 BRCA TCGA-D8-A1JN PTK7 SNP Missense_Mutation 6 43112230 G A 33 97 BRCA TCGA-D8-A1JN DSP SNP Nonsense_Mutation 6 7578090 C T 29 97 BRCA TCGA-D8-A1JN MEPCE SNP Missense_Mutation 7 100030928 G C 33 76 BRCA TCGA-D8-A1JN POLR2J SNP Missense_Mutation 7 102116688 G T 43 97 BRCA TCGA-D8-A1JN SLC26A3 SNP Nonsense_Mutation 7 107408026 C A 29 58 BRCA TCGA-D8-A1JN RNF148 SNP Silent 7 122342073 G A 45 54 BRCA TCGA-D8-A1JN FASTK SNP Silent 7 150774051 C G 31 20 BRCA TCGA-D8-A1JN GRM3 SNP Missense_Mutation 7 86468257 G T 41 68 BRCA TCGA-D8-A1JN PEX1 SNP Nonsense_Mutation 7 92120666 C A 29 82 BRCA TCGA-D8-A1JN ADCY8 SNP Silent 8 132051878 C T 24 62 BRCA TCGA-D8-A1JN PRKDC SNP Silent 8 48694776 C T 29 53 BRCA TCGA-D8-A1JN PRDM14 SNP Missense_Mutation 8 70981503 G A 40 77 BRCA TCGA-D8-A1JN TMEM245 SNP Silent 9 111849507 G A 37 13 BRCA TCGA-D8-A1JN PDCL SNP Silent 9 125582781 C T 32 51 BRCA TCGA-D8-A1JN LRSAM1 SNP Missense_Mutation 9 130249962 G A 37 59 BRCA TCGA-D8-A1JN OBP2A SNP Missense_Mutation 9 138439791 C T 27 44 BRCA TCGA-D8-A1JN DNAJB5 SNP Missense_Mutation 9 34996744 G A 37 84 BRCA TCGA-D8-A1JN RGP1 SNP Missense_Mutation 9 35749395 G A 37 50 BRCA TCGA-D8-A1JN NOL8 SNP Missense_Mutation 9 95086375 G T 44 50 BRCA TCGA-D8-A1JP RSBN1 SNP Missense_Mutation 1 114340437 A G 3 81 BRCA TCGA-D8-A1JP PEX19 SNP Missense_Mutation 1 160252800 A C 2 52 BRCA TCGA-D8-A1JP LY9 SNP Missense_Mutation 1 160769623 A C 8 58 BRCA TCGA-D8-A1JP CDK11A SNP Silent 1 1635323 C A 29 52 BRCA TCGA-D8-A1JP CEP350 SNP Missense_Mutation 1 180063342 C T 17 55 BRCA TCGA-D8-A1JP RGSL1 SNP Missense_Mutation 1 182441609 A T 14 51 BRCA TCGA-D8-A1JP RGS8 SNP Missense_Mutation 1 182640821 G T 44 59 BRCA TCGA-D8-A1JP OTUD3 SNP Missense_Mutation 1 20230830 A T 10 65 BRCA TCGA-D8-A1JP PIK3C2B SNP Silent 1 204412686 G A 41 55 BRCA TCGA-D8-A1JP EPRS SNP Missense_Mutation 1 220195746 T A 50 93 BRCA TCGA-D8-A1JP OR2M2 DEL Frame_Shift_Del 1 248344298 CAAAATACTAG - 29 55 BRCA TCGA-D8-A1JP BSND SNP Missense_Mutation 1 55464896 G T 48 52 BRCA TCGA-D8-A1JP MSH4 SNP Silent 1 76349385 T G 53 56 BRCA TCGA-D8-A1JP LPPR4 SNP Missense_Mutation 1 99764684 G A 46 100 BRCA TCGA-D8-A1JP PRKG1 SNP Missense_Mutation 10 53893644 C A 18 74 BRCA TCGA-D8-A1JP UEVLD DEL In_Frame_Del 11 18566322 GTTACATAG - 48 100 BRCA TCGA-D8-A1JP ATHL1 SNP Missense_Mutation 11 290850 C G 24 55 BRCA TCGA-D8-A1JP OR5F1 SNP Silent 11 55761642 G A 34 46 BRCA TCGA-D8-A1JP OR10Q1 SNP Missense_Mutation 11 57995900 C A 22 51 BRCA TCGA-D8-A1JP PPP6R3 SNP Missense_Mutation 11 68359089 C A 17 100 BRCA TCGA-D8-A1JP FOLR1 SNP Missense_Mutation 11 71907115 A T 11 55 BRCA TCGA-D8-A1JP DAO SNP Silent 12 109278917 C G 23 46 BRCA TCGA-D8-A1JP RNF10 SNP Missense_Mutation 12 121001615 G A 41 100 BRCA TCGA-D8-A1JP ANKLE2 SNP Missense_Mutation 12 133331390 C A 17 39 BRCA TCGA-D8-A1JP LRRK2 SNP Missense_Mutation 12 40699719 C T 32 85 BRCA TCGA-D8-A1JP PFKM SNP Silent 12 48539018 T C 52 62 BRCA TCGA-D8-A1JP KRT73 SNP Missense_Mutation 12 53002135 C A 22 65 BRCA TCGA-D8-A1JP PMEL SNP Missense_Mutation 12 56352282 G T 34 52 BRCA TCGA-D8-A1JP MON2 SNP Missense_Mutation 12 62929447 A C 14 90 BRCA TCGA-D8-A1JP C1S SNP Nonsense_Mutation 12 7177194 C T 17 70 BRCA TCGA-D8-A1JP MIPEP SNP Missense_Mutation 13 24438286 G A 33 52 BRCA TCGA-D8-A1JP C1QTNF9B SNP Silent 13 24465974 G A 42 48 BRCA TCGA-D8-A1JP EML1 SNP Missense_Mutation 14 100363567 G T 44 100 BRCA TCGA-D8-A1JP OR4K2 SNP Missense_Mutation 14 20344814 C G 24 73 BRCA TCGA-D8-A1JP HSPA2 SNP Missense_Mutation 14 65008759 G A 37 99 BRCA TCGA-D8-A1JP PCNX SNP Missense_Mutation 14 71576307 C T 21 86 BRCA TCGA-D8-A1JP NUMB SNP Missense_Mutation 14 73743366 T G 61 77 BRCA TCGA-D8-A1JP KCNK13 SNP Missense_Mutation 14 90650936 C G 32 51 BRCA TCGA-D8-A1JP ITPK1 SNP Silent 14 93424627 G A 35 71 BRCA TCGA-D8-A1JP CYP1A2 SNP Missense_Mutation 15 75042230 C G 28 46 BRCA TCGA-D8-A1JP ST20-MTHFS SNP Missense_Mutation 15 80181544 C G 21 82 BRCA TCGA-D8-A1JP CPEB1 SNP Splice_Site 15 83218208 A C 14 94 BRCA TCGA-D8-A1JP TICRR SNP Missense_Mutation 15 90167547 G A 35 50 BRCA TCGA-D8-A1JP FURIN SNP Silent 15 91419739 C T 19 44 BRCA TCGA-D8-A1JP SLCO3A1 SNP Splice_site 15 92638112 A T 9 52 BRCA TCGA-D8-A1JP BFAR SNP Missense_Mutation 16 14748927 C G 28 95 BRCA TCGA-D8-A1JP GTF3C1 SNP Missense_Mutation 16 27517381 C T 24 66 BRCA TCGA-D8-A1JP RAB11FIP3 SNP Silent 16 569771 G A 47 70 BRCA TCGA-D8-A1JP BANP SNP Missense_Mutation 16 88014716 C A 21 80 BRCA TCGA-D8-A1JP SGSM2 SNP Missense_Mutation 17 2282366 T C 59 78 BRCA TCGA-D8-A1JP OR3A1 SNP Missense_Mutation 17 3195744 T G 63 64 BRCA TCGA-D8-A1JP ZMYND15 SNP Missense_Mutation 17 4648519 G C 36 62 BRCA TCGA-D8-A1JP GEMIN4 SNP Missense_Mutation 17 649578 C A 17 77 BRCA TCGA-D8-A1JP GALR2 SNP Missense_Mutation 17 74071177 C A 18 64 BRCA TCGA-D8-A1JP MC2R SNP Silent 18 13884723 G A 45 47 BRCA TCGA-D8-A1JP COL5A3 SNP Missense_Mutation 19 10097037 G A 38 42 BRCA TCGA-D8-A1JP NCAN SNP Silent 19 19327774 G T 40 40 BRCA TCGA-D8-A1JP ANKRD27 SNP Silent 19 33134043 C A 29 50 BRCA TCGA-D8-A1JP SIPA1L3 SNP Missense_Mutation 19 38610164 C G 22 100 BRCA TCGA-D8-A1JP ZFP112 SNP Silent 19 44832009 T G 54 46 BRCA TCGA-D8-A1JP SYMPK SNP Silent 19 46334728 A C 2 51 BRCA TCGA-D8-A1JP MLLT1 SNP Missense_Mutation 19 6270707 C G 30 96 BRCA TCGA-D8-A1JP MUC16 SNP Silent 19 9089493 G T 43 36 BRCA TCGA-D8-A1JP FHL2 SNP Missense_Mutation 2 105979846 A T 7 92 BRCA TCGA-D8-A1JP SCN9A SNP Missense_Mutation 2 167163093 T C 51 94 BRCA TCGA-D8-A1JP RBM45 SNP Missense_Mutation 2 178988887 C G 29 96 BRCA TCGA-D8-A1JP TTN SNP Missense_Mutation 2 179433377 T C 60 67 BRCA TCGA-D8-A1JP PIKFYVE SNP Missense_Mutation 2 209190360 A G 9 91 BRCA TCGA-D8-A1JP CRNKL1 SNP Missense_Mutation 20 20033136 C A 28 58 BRCA TCGA-D8-A1JP ZHX3 SNP Missense_Mutation 20 39831411 T C 49 39 BRCA TCGA-D8-A1JP CHD6 SNP Nonsense_Mutation 20 40076584 G T 36 65 BRCA TCGA-D8-A1JP TCFL5 DEL Frame_Shift_Del 20 61473372 AGGACAGG - 7 33 BRCA TCGA-D8-A1JP TCFL5 DEL In_Frame_Del 20 61473381 CACCAAGGA - 29 61 BRCA TCGA-D8-A1JP PAK7 SNP Missense_Mutation 20 9546953 G T 36 85 BRCA TCGA-D8-A1JP DYRK1A SNP Missense_Mutation 21 38845158 G C 33 99 BRCA TCGA-D8-A1JP ADORA2A DNP Missense_Mutation 22 24837011 GC TT 38 61 BRCA TCGA-D8-A1JP ZBED4 SNP Missense_Mutation 22 50279223 C T 28 67 BRCA TCGA-D8-A1JP TBC1D8B SNP Missense_Mutation 23 106066568 G A 48 93 BRCA TCGA-D8-A1JP GABRA3 SNP Silent 23 151514123 G T 45 69 BRCA TCGA-D8-A1JP CASK DEL Frame_Shift_Del 23 41782237 GCCATGGTCCGGAGGGGATAGCGGCC - 42 88 BRCA TCGA-D8-A1JP STARD8 SNP Missense_Mutation 23 67941499 A C 1 54 BRCA TCGA-D8-A1JP CCDC80 SNP Missense_Mutation 3 112358086 T A 50 78 BRCA TCGA-D8-A1JP GPR156 DEL In_Frame_Del 3 119899984 GAT - 33 81 BRCA TCGA-D8-A1JP KALRN SNP Missense_Mutation 3 124281865 C G 22 97 BRCA TCGA-D8-A1JP ZNF148 SNP Missense_Mutation 3 124951438 G A 33 74 BRCA TCGA-D8-A1JP P2RY13 SNP Silent 3 151046415 G C 45 52 BRCA TCGA-D8-A1JP LEKR1 SNP Missense_Mutation 3 156570747 T C 52 51 BRCA TCGA-D8-A1JP PIK3CA SNP Missense_Mutation 3 178916946 G C 33 62 BRCA TCGA-D8-A1JP BCL6 SNP Missense_Mutation 3 187447483 G A 47 65 BRCA TCGA-D8-A1JP IL1RAP SNP Missense_Mutation 3 190374301 G T 47 75 BRCA TCGA-D8-A1JP EBF1 SNP Missense_Mutation 5 158135133 T G 60 91 BRCA TCGA-D8-A1JP CDHR2 SNP Missense_Mutation 5 176004753 T A 59 78 BRCA TCGA-D8-A1JP ZNF346 SNP Missense_Mutation 5 176471467 G C 36 60 BRCA TCGA-D8-A1JP GFM2 SNP Missense_Mutation 5 74047238 T C 57 71 BRCA TCGA-D8-A1JP MCHR2 SNP Silent 6 100369062 G A 33 48 BRCA TCGA-D8-A1JP PRDM1 SNP Missense_Mutation 6 106554322 A G 6 92 BRCA TCGA-D8-A1JP FIG4 SNP Missense_Mutation 6 110064914 T A 56 90 BRCA TCGA-D8-A1JP ZUFSP DEL In_Frame_Del 6 116977852 GTTTTT - 36 98 BRCA TCGA-D8-A1JP NKAIN2 SNP Splice_site 6 124676413 T C 57 84 BRCA TCGA-D8-A1JP KIAA1244 SNP Silent 6 138655269 C A 32 64 BRCA TCGA-D8-A1JP FNDC1 SNP Silent 6 159670141 G T 45 62 BRCA TCGA-D8-A1JP LPA SNP Missense_Mutation 6 160958958 C A 17 82 BRCA TCGA-D8-A1JP ZSCAN12 SNP Silent 6 28359437 G A 47 48 BRCA TCGA-D8-A1JP MUC12 SNP Missense_Mutation 7 100634488 C T 29 47 BRCA TCGA-D8-A1JP LAMB4 SNP Missense_Mutation 7 107748102 C A 30 77 BRCA TCGA-D8-A1JP CCDC136 SNP Missense_Mutation 7 128452928 A C 3 47 BRCA TCGA-D8-A1JP ZC3HC1 SNP Missense_Mutation 7 129680877 A C 10 68 BRCA TCGA-D8-A1JP MLL3 SNP Nonsense_Mutation 7 151960149 A T 10 63 BRCA TCGA-D8-A1JP SPAG1 SNP Silent 8 101237494 T G 56 31 BRCA TCGA-D8-A1JP ZHX2 SNP Missense_Mutation 8 123964616 A C 7 81 BRCA TCGA-D8-A1JP PCM1 SNP Silent 8 17867196 A G 2 58 BRCA TCGA-D8-A1JP SORBS3 SNP Splice_site 8 22424226 G A 35 59 BRCA TCGA-D8-A1JP C9orf84 SNP Missense_Mutation 9 114466195 A C 6 79 BRCA TCGA-D8-A1JP DNAI1 SNP Nonsense_Mutation 9 34514447 C G 29 92 BRCA TCGA-D8-A1JP CNTNAP3B SNP Silent 9 43891639 G A 34 57 BRCA TCGA-D8-A1JP GNA14 SNP Silent 9 80043864 G A 33 60 BRCA TCGA-D8-A1JS SARS SNP Missense_Mutation 1 109774392 A T 12 93 BRCA TCGA-D8-A1JS TRIM17 SNP Missense_Mutation 1 228596888 G C 34 65 BRCA TCGA-D8-A1JS HDAC1 SNP Splice_Site 1 32798616 A T 7 65 BRCA TCGA-D8-A1JS RPUSD4 SNP Silent 11 126075478 G A 40 52 BRCA TCGA-D8-A1JS SOS2 SNP Missense_Mutation 14 50623747 C T 27 85 BRCA TCGA-D8-A1JS CCDC43 SNP Missense_Mutation 17 42766938 C T 22 63 BRCA TCGA-D8-A1JS C18orf1 SNP Missense_Mutation 18 13438301 C A 18 67 BRCA TCGA-D8-A1JS CACNA1A SNP Silent 19 13370458 C T 32 63 BRCA TCGA-D8-A1JS MUC16 SNP Missense_Mutation 19 9076395 C T 28 53 BRCA TCGA-D8-A1JS E2F1 SNP Missense_Mutation 20 32265318 G A 37 74 BRCA TCGA-D8-A1JS ITGB2 SNP Missense_Mutation 21 46309941 C T 29 74 BRCA TCGA-D8-A1JS SH3KBP1 SNP Missense_Mutation 23 19764522 T C 60 51 BRCA TCGA-D8-A1JS KIF4A SNP Silent 23 69521827 G A 41 53 BRCA TCGA-D8-A1JS PIK3CA SNP Missense_Mutation 3 178921548 G A 40 97 BRCA TCGA-D8-A1JS PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-D8-A1JS THUMPD3 SNP Missense_Mutation 3 9425945 G A 41 99 BRCA TCGA-D8-A1JS INTS12 SNP Silent 4 106604454 T A 62 54 BRCA TCGA-D8-A1JS PCGF3 SNP Missense_Mutation 4 728744 A T 14 85 BRCA TCGA-D8-A1JS MRPS18C SNP Silent 4 84377236 C T 23 0 BRCA TCGA-D8-A1JS MUC12 SNP Missense_Mutation 7 100643116 C T 27 34 BRCA TCGA-D8-A1JS LRRD1 SNP Silent 7 91793911 T C 59 42 BRCA TCGA-D8-A1JS LOXL2 SNP Silent 8 23174487 G A 40 37 BRCA TCGA-D8-A1JS TGS1 SNP Missense_Mutation 8 56698879 C A 32 66 BRCA TCGA-D8-A1JT LGR6 SNP Missense_Mutation 1 202249911 A T 8 85 BRCA TCGA-D8-A1JT RYR2 SNP Silent 1 237608772 C G 25 45 BRCA TCGA-D8-A1JT CASP4 SNP Missense_Mutation 11 104825700 C G 24 51 BRCA TCGA-D8-A1JT DHX37 SNP Missense_Mutation 12 125448967 C T 30 99 BRCA TCGA-D8-A1JT OR8S1 SNP Missense_Mutation 12 48919779 G A 38 67 BRCA TCGA-D8-A1JT TPP2 SNP Missense_Mutation 13 103301465 A C 2 72 BRCA TCGA-D8-A1JT MPHOSPH8 SNP Missense_Mutation 13 20237220 C T 28 96 BRCA TCGA-D8-A1JT ZDHHC20 SNP Missense_Mutation 13 21955605 T C 54 65 BRCA TCGA-D8-A1JT NOVA1 SNP Silent 14 26939694 C T 28 53 BRCA TCGA-D8-A1JT LINS SNP Silent 15 101115307 A T 3 50 BRCA TCGA-D8-A1JT ZNF609 SNP Missense_Mutation 15 64915230 G C 40 100 BRCA TCGA-D8-A1JT IREB2 SNP Splice_site 15 78775776 G A 35 100 BRCA TCGA-D8-A1JT ALDOC SNP Splice_site 17 26901258 A G 10 92 BRCA TCGA-D8-A1JT NEK8 SNP Missense_Mutation 17 27064381 C T 23 86 BRCA TCGA-D8-A1JT DCAF7 SNP Missense_Mutation 17 61662631 G A 37 100 BRCA TCGA-D8-A1JT TRPM4 INS Frame_Shift_Ins 19 49700060 - T 32 52 BRCA TCGA-D8-A1JT MUC16 SNP Missense_Mutation 19 9085003 G A 36 53 BRCA TCGA-D8-A1JT CRIM1 SNP Missense_Mutation 2 36583699 G C 46 55 BRCA TCGA-D8-A1JT TFF2 SNP Silent 21 43767728 G A 38 35 BRCA TCGA-D8-A1JT POU3F4 SNP Missense_Mutation 23 82764246 C T 27 97 BRCA TCGA-D8-A1JT KALRN SNP Missense_Mutation 3 124438238 G A 40 100 BRCA TCGA-D8-A1JT ADAM29 SNP Silent 4 175897708 G A 35 33 BRCA TCGA-D8-A1JT FAT1 SNP Silent 4 187629455 C T 19 28 BRCA TCGA-D8-A1JT PCDHGB7 SNP Missense_Mutation 5 140798223 C A 26 87 BRCA TCGA-D8-A1JT PLK2 DEL In_Frame_Del 5 57750566 GAT - 33 61 BRCA TCGA-D8-A1JT FAM174A SNP Silent 5 99871633 C G 27 53 BRCA TCGA-D8-A1JT RNF148 SNP Missense_Mutation 7 122342439 C A 24 51 BRCA TCGA-D8-A1JT ABCB8 SNP Missense_Mutation 7 150732987 G A 40 80 BRCA TCGA-D8-A1JT MLL3 DEL Frame_Shift_Del 7 151843775 TT - 56 60 BRCA TCGA-D8-A1JT WBSCR17 SNP Missense_Mutation 7 71142235 G A 43 94 BRCA TCGA-D8-A1JT WISP1 SNP Missense_Mutation 8 134232962 C T 23 83 BRCA TCGA-D8-A1JT VCPIP1 SNP Missense_Mutation 8 67578573 A C 10 57 BRCA TCGA-D8-A1JT PSMD5 SNP Missense_Mutation 9 123593673 T C 52 60 BRCA TCGA-D8-A1JT CNTRL SNP Missense_Mutation 9 123930557 G A 41 85 BRCA TCGA-D8-A1JT IFT74 SNP Missense_Mutation 9 26988692 C T 20 85 BRCA TCGA-D8-A1JU HMCN1 SNP Missense_Mutation 1 185985219 T C 57 59 BRCA TCGA-D8-A1JU LAX1 SNP Silent 1 203743056 A T 7 46 BRCA TCGA-D8-A1JU SYT9 SNP Silent 11 7324289 G A 45 70 BRCA TCGA-D8-A1JU RPH3A SNP Missense_Mutation 12 113307785 G A 37 80 BRCA TCGA-D8-A1JU MYCBP2 SNP Silent 13 77748601 G A 34 49 BRCA TCGA-D8-A1JU HS3ST4 SNP Missense_Mutation 16 26147094 C G 19 97 BRCA TCGA-D8-A1JU CLEC18C SNP Silent 16 70211218 G A 40 32 BRCA TCGA-D8-A1JU APOB SNP Silent 2 21233395 C T 21 52 BRCA TCGA-D8-A1JU FAM47B SNP Missense_Mutation 23 34962644 C A 18 56 BRCA TCGA-D8-A1JU PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-D8-A1JU COPS4 SNP Splice_Site 4 83971138 G A 36 97 BRCA TCGA-D8-A1JU PCDHGA9 SNP Silent 5 140784341 C T 24 63 BRCA TCGA-D8-A1JU MAP3K1 DEL Frame_Shift_Del 5 56155725 AG - 3 55 BRCA TCGA-D8-A1JU SLC25A27 SNP Missense_Mutation 6 46637908 A C 6 53 BRCA TCGA-D8-A1JU TNFRSF11B SNP Missense_Mutation 8 119936777 C T 27 68 BRCA TCGA-D8-A1X5 BNIPL SNP Missense_Mutation 1 151018589 C A 28 60 BRCA TCGA-D8-A1X5 USH2A INS Frame_Shift_Ins 1 216246478 - T 32 54 BRCA TCGA-D8-A1X5 ZP4 SNP Nonsense_Mutation 1 238051727 C A 24 56 BRCA TCGA-D8-A1X5 FMN2 SNP Missense_Mutation 1 240256746 G A 39 57 BRCA TCGA-D8-A1X5 SNX19 SNP Missense_Mutation 11 130781614 T C 57 76 BRCA TCGA-D8-A1X5 ANO3 SNP Missense_Mutation 11 26620415 G A 40 86 BRCA TCGA-D8-A1X5 MS4A14 SNP Missense_Mutation 11 60184021 C T 32 54 BRCA TCGA-D8-A1X5 DDB1 SNP Silent 11 61094351 C T 26 52 BRCA TCGA-D8-A1X5 FAM160A2 SNP Silent 11 6232928 G A 38 40 BRCA TCGA-D8-A1X5 DERA SNP Nonsense_Mutation 12 16115830 G T 33 97 BRCA TCGA-D8-A1X5 MYH13 SNP Missense_Mutation 17 10216033 G A 40 69 BRCA TCGA-D8-A1X5 TSEN54 SNP Silent 17 73520470 T C 60 64 BRCA TCGA-D8-A1X5 TP53 SNP Missense_Mutation 17 7577568 C A 17 93 BRCA TCGA-D8-A1X5 TMX3 SNP Silent 18 66354926 G T 33 56 BRCA TCGA-D8-A1X5 IL12RB1 SNP Missense_Mutation 19 18188415 G T 46 46 BRCA TCGA-D8-A1X5 ZNF233 SNP Silent 19 44778658 G A 39 14 BRCA TCGA-D8-A1X5 EN1 SNP Missense_Mutation 2 119600587 G A 38 85 BRCA TCGA-D8-A1X5 MAP2 SNP Nonsense_Mutation 2 210560612 G T 33 70 BRCA TCGA-D8-A1X5 APOB SNP Missense_Mutation 2 21234906 A G 3 70 BRCA TCGA-D8-A1X5 PLB1 SNP Silent 2 28775833 C T 18 40 BRCA TCGA-D8-A1X5 ZFP36L2 SNP Silent 2 43453434 G A 39 51 BRCA TCGA-D8-A1X5 CNNM3 SNP Silent 2 97498311 C T 27 54 BRCA TCGA-D8-A1X5 LAMA5 SNP Silent 20 60885515 C T 23 44 BRCA TCGA-D8-A1X5 YTHDF1 SNP Silent 20 61834989 G A 40 29 BRCA TCGA-D8-A1X5 APOL6 SNP Silent 22 36055202 G A 47 49 BRCA TCGA-D8-A1X5 RAB9B SNP Missense_Mutation 23 103080689 T G 56 84 BRCA TCGA-D8-A1X5 STAG2 SNP Missense_Mutation 23 123196791 A T 15 58 BRCA TCGA-D8-A1X5 CDKL5 SNP Nonsense_Mutation 23 18638042 G T 35 89 BRCA TCGA-D8-A1X5 ANO10 SNP Missense_Mutation 3 43596874 C A 25 85 BRCA TCGA-D8-A1X5 POC1A SNP Missense_Mutation 3 52109949 T G 55 72 BRCA TCGA-D8-A1X5 FAM149A SNP Silent 4 187077211 C T 31 41 BRCA TCGA-D8-A1X5 C7 SNP Silent 5 40959618 A G 9 54 BRCA TCGA-D8-A1X5 GRIK2 SNP Silent 6 101847171 G A 37 58 BRCA TCGA-D8-A1X5 FYN SNP Silent 6 112015900 T C 57 66 BRCA TCGA-D8-A1X5 RNF182 SNP Missense_Mutation 6 13977923 G T 46 58 BRCA TCGA-D8-A1X5 PGBD1 SNP Missense_Mutation 6 28269126 G A 45 78 BRCA TCGA-D8-A1X5 PI16 SNP Silent 6 36922584 A G 14 45 BRCA TCGA-D8-A1X5 DSP SNP Missense_Mutation 6 7582932 G C 33 96 BRCA TCGA-D8-A1X5 MYO6 INS Frame_Shift_Ins 6 76551053 - TA 49 50 BRCA TCGA-D8-A1X5 CTTNBP2 SNP Missense_Mutation 7 117432213 C A 25 73 BRCA TCGA-D8-A1X5 INMT SNP Missense_Mutation 7 30795418 C A 26 55 BRCA TCGA-D8-A1X5 RFC2 SNP Silent 7 73651677 G A 43 51 BRCA TCGA-D8-A1X5 COL22A1 SNP Missense_Mutation 8 139856380 C T 19 63 BRCA TCGA-D8-A1X5 ADAMTSL2 SNP Silent 9 136405814 A G 8 18 BRCA TCGA-D8-A1X5 UNC13B SNP Silent 9 35295823 G A 39 35 BRCA TCGA-D8-A1X5 KIAA2026 SNP Missense_Mutation 9 5988477 C A 30 76 BRCA TCGA-D8-A1X6 SPTA1 SNP Nonsense_Mutation 1 158654984 G A 38 53 BRCA TCGA-D8-A1X6 VSIG8 SNP Missense_Mutation 1 159828685 G A 38 59 BRCA TCGA-D8-A1X6 CCDC23 SNP Missense_Mutation 1 43282112 T C 63 77 BRCA TCGA-D8-A1X6 USP24 SNP Missense_Mutation 1 55589159 G A 33 82 BRCA TCGA-D8-A1X6 SEC23IP SNP Missense_Mutation 10 121674317 G A 34 98 BRCA TCGA-D8-A1X6 GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-D8-A1X6 AMBRA1 SNP Silent 11 46419045 G A 46 57 BRCA TCGA-D8-A1X6 HCFC2 SNP Missense_Mutation 12 104495851 G C 35 96 BRCA TCGA-D8-A1X6 TBX3 SNP Missense_Mutation 12 115118782 G A 45 100 BRCA TCGA-D8-A1X6 NCKAP1L SNP Missense_Mutation 12 54902260 C T 31 65 BRCA TCGA-D8-A1X6 MARS SNP Missense_Mutation 12 57894289 A T 4 87 BRCA TCGA-D8-A1X6 MTUS2 SNP Missense_Mutation 13 29608146 G A 40 83 BRCA TCGA-D8-A1X6 FOXG1 SNP Silent 14 29237628 C T 23 63 BRCA TCGA-D8-A1X6 PSMA3 SNP Missense_Mutation 14 58737668 T A 51 78 BRCA TCGA-D8-A1X6 FAM214A SNP Missense_Mutation 15 52879367 G A 35 96 BRCA TCGA-D8-A1X6 ADAMTS7 SNP Missense_Mutation 15 79058631 G T 43 48 BRCA TCGA-D8-A1X6 CTCF SNP Splice_site 16 67644736 A G 4 71 BRCA TCGA-D8-A1X6 NEUROD2 INS Frame_Shift_Ins 17 37761947 - G 27 58 BRCA TCGA-D8-A1X6 FAM57A INS In_Frame_Ins 17 636320 - CTC 62 42 BRCA TCGA-D8-A1X6 DSC1 SNP Missense_Mutation 18 28714069 C T 23 55 BRCA TCGA-D8-A1X6 PLD3 SNP Silent 19 40883954 G A 38 40 BRCA TCGA-D8-A1X6 LIMS1 SNP Missense_Mutation 2 109300418 G T 33 100 BRCA TCGA-D8-A1X6 NFE2L2 SNP Missense_Mutation 2 178098009 G C 38 74 BRCA TCGA-D8-A1X6 UGT1A4 SNP Silent 2 234680995 T C 63 50 BRCA TCGA-D8-A1X6 TAB3 SNP Missense_Mutation 23 30872398 C T 28 70 BRCA TCGA-D8-A1X6 PCDH19 SNP Missense_Mutation 23 99662740 G A 38 54 BRCA TCGA-D8-A1X6 GAP43 SNP Missense_Mutation 3 115439676 C T 23 86 BRCA TCGA-D8-A1X6 C3orf55 SNP Splice_Site 3 157289743 G T 33 57 BRCA TCGA-D8-A1X6 KAT2B SNP Missense_Mutation 3 20167590 G A 39 99 BRCA TCGA-D8-A1X6 SLC26A6 SNP Missense_Mutation 3 48668568 A C 6 57 BRCA TCGA-D8-A1X6 P4HTM SNP Missense_Mutation 3 49044240 T C 62 60 BRCA TCGA-D8-A1X6 FLNB SNP Missense_Mutation 3 58080583 A G 8 61 BRCA TCGA-D8-A1X6 ATXN7 SNP Missense_Mutation 3 63981414 G C 46 79 BRCA TCGA-D8-A1X6 EXOSC9 SNP Missense_Mutation 4 122735146 T C 52 62 BRCA TCGA-D8-A1X6 MAP3K1 INS Frame_Shift_Ins 5 56160679 - A 61 83 BRCA TCGA-D8-A1X6 ACTL6B SNP Missense_Mutation 7 100244424 C G 22 64 BRCA TCGA-D8-A1X6 MLL3 INS Frame_Shift_Ins 7 151841851 - CC 62 62 BRCA TCGA-D8-A1X6 SPAG11B SNP Silent 8 7320248 C T 27 45 BRCA TCGA-D8-A1X6 BRD3 SNP Missense_Mutation 9 136918532 G A 43 97 BRCA TCGA-D8-A1X6 PNPLA7 SNP Silent 9 140395220 G A 39 11 BRCA TCGA-D8-A1X6 KDM4C SNP Splice_site 9 6805599 G C 44 100 BRCA TCGA-D8-A1X7 AADACL4 SNP Missense_Mutation 1 12711145 A T 9 48 BRCA TCGA-D8-A1X7 HRNR SNP Silent 1 152189038 A G 8 49 BRCA TCGA-D8-A1X7 TMCO4 SNP Missense_Mutation 1 20027295 C T 18 86 BRCA TCGA-D8-A1X7 PCNXL2 SNP Missense_Mutation 1 233344320 T C 49 77 BRCA TCGA-D8-A1X7 MYBPC1 SNP Silent 12 102053566 C T 19 50 BRCA TCGA-D8-A1X7 FBXL14 SNP Missense_Mutation 12 1702880 G A 41 80 BRCA TCGA-D8-A1X7 CILP SNP Nonsense_Mutation 15 65495782 C A 29 56 BRCA TCGA-D8-A1X7 ZNF286B SNP Missense_Mutation 17 18565506 G C 43 74 BRCA TCGA-D8-A1X7 MAST1 SNP Missense_Mutation 19 12954345 C T 27 85 BRCA TCGA-D8-A1X7 KIAA1683 SNP Missense_Mutation 19 18375974 G T 38 46 BRCA TCGA-D8-A1X7 FCGBP SNP Missense_Mutation 19 40392802 C T 26 58 BRCA TCGA-D8-A1X7 SLC9A2 SNP Missense_Mutation 2 103311569 A G 10 84 BRCA TCGA-D8-A1X7 EPC2 SNP Missense_Mutation 2 149501311 G A 33 96 BRCA TCGA-D8-A1X7 STK11IP SNP Missense_Mutation 2 220476737 A T 11 61 BRCA TCGA-D8-A1X7 OTOF SNP Missense_Mutation 2 26707384 G A 40 80 BRCA TCGA-D8-A1X7 USP34 SNP Silent 2 61468772 G A 34 88 BRCA TCGA-D8-A1X7 SALL4 SNP Silent 20 50408674 G A 39 42 BRCA TCGA-D8-A1X7 PNMA5 SNP Silent 23 152159057 G A 33 33 BRCA TCGA-D8-A1X7 USP9X SNP Nonsense_Mutation 23 41025387 C T 31 78 BRCA TCGA-D8-A1X7 ANKRD32 SNP Missense_Mutation 5 94005921 A C 6 62 BRCA TCGA-D8-A1X7 FZD9 SNP Missense_Mutation 7 72849875 A T 1 89 BRCA TCGA-D8-A1X7 GLI4 SNP Missense_Mutation 8 144358528 C G 25 69 BRCA TCGA-D8-A1X7 IKBKAP SNP Missense_Mutation 9 111673326 G C 33 67 BRCA TCGA-D8-A1X7 SLC27A4 SNP Missense_Mutation 9 131115797 G A 42 97 BRCA TCGA-D8-A1X7 DOCK8 SNP Missense_Mutation 9 317062 G A 40 89 BRCA TCGA-D8-A1X7 FOXD4L3 SNP Missense_Mutation 9 70917883 G A 34 53 BRCA TCGA-D8-A1X8 MST1P9 DEL Frame_Shift_Del 1 17086940 AC - 14 49 BRCA TCGA-D8-A1X8 NLRP3 SNP Missense_Mutation 1 247582326 C T 27 57 BRCA TCGA-D8-A1X8 RRP12 SNP Silent 10 99132555 C T 29 68 BRCA TCGA-D8-A1X8 MUC2 INS In_Frame_Ins 11 1092619 - CAA 30 33 BRCA TCGA-D8-A1X8 AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-D8-A1X8 SYNE2 SNP Missense_Mutation 14 64635628 A T 4 50 BRCA TCGA-D8-A1X8 SEPT12 SNP Silent 16 4829725 G A 41 51 BRCA TCGA-D8-A1X8 CDH1 DEL Frame_Shift_Del 16 68844223 GTCATGGAAG - 48 80 BRCA TCGA-D8-A1X8 PAFAH1B1 SNP Nonsense_Mutation 17 2573487 C T 19 70 BRCA TCGA-D8-A1X8 MTMR4 SNP Silent 17 56582889 G T 41 68 BRCA TCGA-D8-A1X8 SGSH SNP Missense_Mutation 17 78185893 C A 28 96 BRCA TCGA-D8-A1X8 APBA3 SNP Silent 19 3753892 G A 33 61 BRCA TCGA-D8-A1X8 SHANK1 SNP Silent 19 51165693 G A 39 55 BRCA TCGA-D8-A1X8 KLK13 SNP Missense_Mutation 19 51563756 C T 23 54 BRCA TCGA-D8-A1X8 SYT5 SNP Missense_Mutation 19 55687114 G A 40 73 BRCA TCGA-D8-A1X8 THSD7B SNP Silent 2 138033556 G A 39 53 BRCA TCGA-D8-A1X8 C2orf78 SNP Missense_Mutation 2 74043504 G T 45 59 BRCA TCGA-D8-A1X8 TET3 DEL In_Frame_Del 2 74274856 AAAGCCCATTCAGATCAA - 9 49 BRCA TCGA-D8-A1X8 NCOA6 SNP Missense_Mutation 20 33328692 T C 60 53 BRCA TCGA-D8-A1X8 CT47B1 DEL In_Frame_Del 23 120008797 TCCTCTGTGGCCTCCTCTGTGAGCTTC - 62 51 BRCA TCGA-D8-A1X8 FAM47C SNP Missense_Mutation 23 37027408 G C 41 69 BRCA TCGA-D8-A1X8 ZMYM3 SNP Splice_site 23 70464640 C T 24 63 BRCA TCGA-D8-A1X8 SETD2 DEL Frame_Shift_Del 3 47098494 CGGCA - 23 39 BRCA TCGA-D8-A1X8 SETD2 DEL Frame_Shift_Del 3 47098502 GCAAGACA - 42 72 BRCA TCGA-D8-A1X8 PCDHGB4 SNP Missense_Mutation 5 140769310 G A 38 70 BRCA TCGA-D8-A1X8 PDZD2 SNP Missense_Mutation 5 32088636 A C 3 41 BRCA TCGA-D8-A1X8 PLK2 SNP Missense_Mutation 5 57751415 C G 23 98 BRCA TCGA-D8-A1X8 THBS4 SNP Silent 5 79374937 C T 22 42 BRCA TCGA-D8-A1X8 CAST SNP Silent 5 96100942 C T 31 19 BRCA TCGA-D8-A1X8 SERPINE1 SNP Silent 7 100771746 G T 46 41 BRCA TCGA-D8-A1X8 ABCA13 SNP Missense_Mutation 7 48450174 G A 38 58 BRCA TCGA-D8-A1X8 ZNF483 SNP Splice_Site 9 114293154 G C 33 69 BRCA TCGA-D8-A1X9 MTMR11 SNP Silent 1 149903191 G T 35 56 BRCA TCGA-D8-A1X9 APH1A SNP Silent 1 150240461 G T 39 48 BRCA TCGA-D8-A1X9 DENND4B SNP Missense_Mutation 1 153915527 G T 35 73 BRCA TCGA-D8-A1X9 CCT3 SNP Splice_Site 1 156287325 A C 4 90 BRCA TCGA-D8-A1X9 OR10T2 SNP Silent 1 158368836 G A 34 50 BRCA TCGA-D8-A1X9 SPTA1 SNP Missense_Mutation 1 158639531 C A 29 90 BRCA TCGA-D8-A1X9 FMO1 SNP Silent 1 171251333 C A 26 56 BRCA TCGA-D8-A1X9 CHRM3 SNP Silent 1 240072278 C A 29 63 BRCA TCGA-D8-A1X9 SDCCAG8 SNP Missense_Mutation 1 243419510 A G 11 72 BRCA TCGA-D8-A1X9 RERE SNP Missense_Mutation 1 8421833 G C 48 99 BRCA TCGA-D8-A1X9 RBM20 SNP Silent 10 112581284 A C 15 47 BRCA TCGA-D8-A1X9 PITRM1 SNP Missense_Mutation 10 3181120 C T 25 59 BRCA TCGA-D8-A1X9 VSTM4 DEL In_Frame_Del 10 50315947 TGGGAGACG - 55 89 BRCA TCGA-D8-A1X9 P4HA1 SNP Missense_Mutation 10 74769591 C A 17 96 BRCA TCGA-D8-A1X9 TIMM8B SNP Missense_Mutation 11 111957438 G T 34 57 BRCA TCGA-D8-A1X9 SOX6 SNP Missense_Mutation 11 16007910 C T 26 100 BRCA TCGA-D8-A1X9 ZNF408 SNP Missense_Mutation 11 46726161 A T 14 50 BRCA TCGA-D8-A1X9 OR52B2 SNP Missense_Mutation 11 6190716 G T 33 67 BRCA TCGA-D8-A1X9 ATL3 SNP Missense_Mutation 11 63420031 A T 8 88 BRCA TCGA-D8-A1X9 MAP1LC3B2 SNP Missense_Mutation 12 117014080 G T 47 84 BRCA TCGA-D8-A1X9 FAM186A SNP Missense_Mutation 12 50745684 G C 42 51 BRCA TCGA-D8-A1X9 AHNAK2 SNP Missense_Mutation 14 105412985 G A 43 65 BRCA TCGA-D8-A1X9 CTAGE5 SNP Silent 14 39818099 T A 54 51 BRCA TCGA-D8-A1X9 FOS SNP Silent 14 75748073 C T 25 100 BRCA TCGA-D8-A1X9 FSD2 SNP Missense_Mutation 15 83451590 G T 48 67 BRCA TCGA-D8-A1X9 SV2B SNP Silent 15 91769862 G T 43 44 BRCA TCGA-D8-A1X9 HSD3B7 SNP Silent 16 30997512 G A 35 51 BRCA TCGA-D8-A1X9 BCKDK SNP Missense_Mutation 16 31121625 G A 45 95 BRCA TCGA-D8-A1X9 PDPR SNP Missense_Mutation 16 70162893 C G 22 78 BRCA TCGA-D8-A1X9 CTU2 SNP Splice_site 16 88773618 G T 35 59 BRCA TCGA-D8-A1X9 LRRC37B SNP Missense_Mutation 17 30349516 C T 28 51 BRCA TCGA-D8-A1X9 PITPNC1 SNP Nonsense_Mutation 17 65548392 A T 15 54 BRCA TCGA-D8-A1X9 KIF19 SNP Missense_Mutation 17 72338053 C A 17 64 BRCA TCGA-D8-A1X9 GRIN2C SNP Missense_Mutation 17 72842316 T G 59 89 BRCA TCGA-D8-A1X9 EIF4A3 SNP Missense_Mutation 17 78113839 T A 51 86 BRCA TCGA-D8-A1X9 SLC38A10 SNP Missense_Mutation 17 79220110 C T 26 51 BRCA TCGA-D8-A1X9 TRAPPC8 SNP Missense_Mutation 18 29488954 A C 13 49 BRCA TCGA-D8-A1X9 SMAD4 SNP Nonsense_Mutation 18 48604754 G T 45 100 BRCA TCGA-D8-A1X9 OR7C1 SNP Missense_Mutation 19 14910104 G T 44 61 BRCA TCGA-D8-A1X9 COMP SNP Missense_Mutation 19 18897364 G A 43 89 BRCA TCGA-D8-A1X9 RYR1 SNP Missense_Mutation 19 39038978 T A 54 88 BRCA TCGA-D8-A1X9 DMRTC2 SNP Missense_Mutation 19 42355733 G T 42 77 BRCA TCGA-D8-A1X9 LCT SNP Missense_Mutation 2 136579592 T A 64 64 BRCA TCGA-D8-A1X9 PHOSPHO2 SNP Missense_Mutation 2 170557587 C T 19 46 BRCA TCGA-D8-A1X9 KIDINS220 SNP Missense_Mutation 2 8874805 A G 7 91 BRCA TCGA-D8-A1X9 CNGA3 SNP Silent 2 99013589 C T 19 25 BRCA TCGA-D8-A1X9 TSHZ2 SNP Missense_Mutation 20 51870893 A T 8 92 BRCA TCGA-D8-A1X9 DGCR8 SNP Missense_Mutation 22 20074049 T G 55 62 BRCA TCGA-D8-A1X9 PKDREJ SNP Silent 22 46657363 G T 47 50 BRCA TCGA-D8-A1X9 BTK SNP Missense_Mutation 23 100629586 T C 62 82 BRCA TCGA-D8-A1X9 WWC3 SNP Missense_Mutation 23 10092351 G A 39 69 BRCA TCGA-D8-A1X9 F8 SNP Missense_Mutation 23 154133268 A C 15 84 BRCA TCGA-D8-A1X9 NHS SNP Missense_Mutation 23 17743644 C A 25 70 BRCA TCGA-D8-A1X9 PAGE1 SNP Missense_Mutation 23 49459370 C T 22 50 BRCA TCGA-D8-A1X9 ESYT3 SNP Silent 3 138186958 G A 45 64 BRCA TCGA-D8-A1X9 TRIM42 SNP Silent 3 140401895 C G 24 52 BRCA TCGA-D8-A1X9 TFDP2 SNP Missense_Mutation 3 141678678 C G 29 100 BRCA TCGA-D8-A1X9 CCDC39 SNP Missense_Mutation 3 180334625 C A 20 79 BRCA TCGA-D8-A1X9 MLH1 SNP Missense_Mutation 3 37091999 C A 21 69 BRCA TCGA-D8-A1X9 MYRIP SNP Missense_Mutation 3 40192594 A C 5 86 BRCA TCGA-D8-A1X9 ZBTB47 SNP Missense_Mutation 3 42699991 G C 33 75 BRCA TCGA-D8-A1X9 ITIH1 SNP Missense_Mutation 3 52821620 C A 22 52 BRCA TCGA-D8-A1X9 TKT SNP Missense_Mutation 3 53269083 A T 15 92 BRCA TCGA-D8-A1X9 FOXP1 SNP Splice_Site 3 71026978 C A 18 100 BRCA TCGA-D8-A1X9 UGT2B4 SNP Nonsense_Mutation 4 70346546 C A 29 84 BRCA TCGA-D8-A1X9 DSPP SNP Silent 4 88535974 T C 49 40 BRCA TCGA-D8-A1X9 FAM13B SNP Missense_Mutation 5 137289986 C G 29 91 BRCA TCGA-D8-A1X9 ANXA6 SNP Missense_Mutation 5 150508981 T C 57 61 BRCA TCGA-D8-A1X9 C5orf60 DEL Splice_site 5 179070490 ATCTGGAAAGCAGGAG - 4 55 BRCA TCGA-D8-A1X9 HACE1 SNP Splice_Site 6 105224704 C A 24 97 BRCA TCGA-D8-A1X9 TUBE1 SNP Missense_Mutation 6 112395935 C A 32 99 BRCA TCGA-D8-A1X9 TREML4 SNP Silent 6 41196189 C A 24 70 BRCA TCGA-D8-A1X9 COQ3 SNP Missense_Mutation 6 99842022 C A 22 47 BRCA TCGA-D8-A1X9 NRCAM SNP Splice_site 7 107834872 C T 18 99 BRCA TCGA-D8-A1X9 HIBADH SNP Missense_Mutation 7 27578011 A G 7 81 BRCA TCGA-D8-A1X9 CHN2 SNP Missense_Mutation 7 29440430 A G 6 46 BRCA TCGA-D8-A1X9 GLI3 SNP Nonsense_Mutation 7 42079679 G T 45 100 BRCA TCGA-D8-A1X9 OGDH SNP Missense_Mutation 7 44735647 G C 33 69 BRCA TCGA-D8-A1X9 COL1A2 SNP Silent 7 94057753 C T 19 51 BRCA TCGA-D8-A1X9 PPP2R4 DEL Splice_site 9 131898874 GGTACTAGAGCG - 35 96 BRCA TCGA-D8-A1X9 IFNA6 DEL Frame_Shift_Del 9 21350620 GTTGAAGGTCT - 44 56 BRCA TCGA-D8-A1X9 NFX1 SNP Silent 9 33351740 A C 6 45 BRCA TCGA-D8-A1X9 OR13J1 SNP Missense_Mutation 9 35870156 C A 25 78 BRCA TCGA-D8-A1X9 PGM5 SNP Missense_Mutation 9 71080089 G A 40 83 BRCA TCGA-D8-A1XA RPL5 DEL Frame_Shift_Del 1 93299194 ACAA - 10 73 BRCA TCGA-D8-A1XA CYP2E1 SNP Silent 10 135340911 C T 31 35 BRCA TCGA-D8-A1XA AKR1C2 SNP Missense_Mutation 10 5042749 G A 33 62 BRCA TCGA-D8-A1XA C10orf53 SNP Splice_site 10 50916662 G T 45 43 BRCA TCGA-D8-A1XA PRDM10 SNP Missense_Mutation 11 129827675 G A 40 85 BRCA TCGA-D8-A1XA IFITM2 SNP Missense_Mutation 11 308323 T C 59 58 BRCA TCGA-D8-A1XA OR51I1 SNP Missense_Mutation 11 5462323 T C 60 48 BRCA TCGA-D8-A1XA OR5D13 SNP Missense_Mutation 11 55541596 T G 51 57 BRCA TCGA-D8-A1XA TMEM138 SNP Silent 11 61135442 T C 62 38 BRCA TCGA-D8-A1XA ATF1 SNP Missense_Mutation 12 51203349 A G 16 77 BRCA TCGA-D8-A1XA ZFP36L1 INS In_Frame_Ins 14 69256738 - GAT 47 97 BRCA TCGA-D8-A1XA ATP2A1 SNP Missense_Mutation 16 28898983 C A 23 74 BRCA TCGA-D8-A1XA OR3A2 SNP Missense_Mutation 17 3181841 T G 58 88 BRCA TCGA-D8-A1XA AARSD1 SNP Missense_Mutation 17 41123700 G A 33 69 BRCA TCGA-D8-A1XA TP53 SNP Nonsense_Mutation 17 7577022 G A 38 61 BRCA TCGA-D8-A1XA ZNF317 SNP Silent 19 9272088 C T 23 17 BRCA TCGA-D8-A1XA MAP4K3 SNP Silent 2 39519955 T C 59 53 BRCA TCGA-D8-A1XA ATF4 DEL Frame_Shift_Del 22 39918079 TTCC - 52 59 BRCA TCGA-D8-A1XA BRD1 SNP Silent 22 50217426 G A 39 50 BRCA TCGA-D8-A1XA KIAA2022 SNP Missense_Mutation 23 73960664 C T 19 65 BRCA TCGA-D8-A1XA SHROOM2 SNP Missense_Mutation 23 9841726 A G 3 53 BRCA TCGA-D8-A1XA SLC51A SNP Silent 3 195956806 T G 54 52 BRCA TCGA-D8-A1XA IFRD2 SNP Missense_Mutation 3 50327172 C A 22 58 BRCA TCGA-D8-A1XA CENPC1 SNP Missense_Mutation 4 68374632 C T 24 54 BRCA TCGA-D8-A1XA FNIP1 DEL Frame_Shift_Del 5 131080327 CAGTCTTGATATACAAT - 17 97 BRCA TCGA-D8-A1XA MAP3K1 INS Frame_Shift_Ins 5 56183240 - T 20 71 BRCA TCGA-D8-A1XA TRRAP DEL Frame_Shift_Del 7 98581879 TATTCCAACTGTTCCTATCGTGGATTGCT - 53 47 BRCA TCGA-D8-A1XA DLGAP2 SNP Nonsense_Mutation 8 1645363 G A 43 98 BRCA TCGA-D8-A1XA CRISPLD1 DEL Frame_Shift_Del 8 75932129 CA - 29 68 BRCA TCGA-D8-A1XB PRRC2C SNP Missense_Mutation 1 171549015 G A 35 66 BRCA TCGA-D8-A1XB C1orf222 SNP Missense_Mutation 1 1888142 C T 19 26 BRCA TCGA-D8-A1XB OR13G1 SNP Missense_Mutation 1 247835571 C T 27 59 BRCA TCGA-D8-A1XB KRTAP5-1 SNP Missense_Mutation 11 1605996 A C 6 46 BRCA TCGA-D8-A1XB PPM1H SNP Missense_Mutation 12 63061084 T C 49 74 BRCA TCGA-D8-A1XB CLEC4A SNP Missense_Mutation 12 8288271 G A 36 71 BRCA TCGA-D8-A1XB C14orf129 SNP Missense_Mutation 14 96851896 T A 64 44 BRCA TCGA-D8-A1XB INO80 SNP Missense_Mutation 15 41372096 G A 45 96 BRCA TCGA-D8-A1XB MEIOB SNP Silent 16 1889430 A G 6 51 BRCA TCGA-D8-A1XB MFSD11 SNP Missense_Mutation 17 74734448 C G 32 65 BRCA TCGA-D8-A1XB C19orf26 SNP Missense_Mutation 19 1235064 G A 39 54 BRCA TCGA-D8-A1XB SLC25A42 SNP Silent 19 19218751 G T 42 39 BRCA TCGA-D8-A1XB ZNF461 SNP Missense_Mutation 19 37130642 C T 20 48 BRCA TCGA-D8-A1XB ZFP112 SNP Splice_site 19 44831587 C A 29 55 BRCA TCGA-D8-A1XB PKP4 SNP Missense_Mutation 2 159481627 T G 54 89 BRCA TCGA-D8-A1XB OST4 DEL In_Frame_Del 2 27294263 ACG - 2 88 BRCA TCGA-D8-A1XB CLDN14 SNP Missense_Mutation 21 37833546 G C 43 100 BRCA TCGA-D8-A1XB C22orf25 SNP Missense_Mutation 22 20024370 G A 38 74 BRCA TCGA-D8-A1XB SLC6A14 SNP Missense_Mutation 23 115585541 T C 51 67 BRCA TCGA-D8-A1XB GRIPAP1 SNP Missense_Mutation 23 48839811 C T 21 49 BRCA TCGA-D8-A1XB PIK3CA DEL In_Frame_Del 3 178916926 GTAGGCAACCGT - 36 97 BRCA TCGA-D8-A1XB DCLK3 SNP Silent 3 36759619 G A 41 53 BRCA TCGA-D8-A1XB CCDC13 SNP Silent 3 42777253 C T 28 55 BRCA TCGA-D8-A1XB GLRA3 SNP Missense_Mutation 4 175649752 A T 8 90 BRCA TCGA-D8-A1XB ANKRD37 SNP Missense_Mutation 4 186318102 G A 37 71 BRCA TCGA-D8-A1XB MAP3K1 SNP Splice_site 5 56177099 G T 35 75 BRCA TCGA-D8-A1XB MAP3K1 SNP Missense_Mutation 5 56179396 T A 57 87 BRCA TCGA-D8-A1XB C6orf170 SNP Missense_Mutation 6 121526246 C T 29 90 BRCA TCGA-D8-A1XB WTAP SNP Missense_Mutation 6 160174524 G C 37 100 BRCA TCGA-D8-A1XC TOR3A SNP Missense_Mutation 1 179063271 C T 28 74 BRCA TCGA-D8-A1XC BCO2 SNP Nonsense_Mutation 11 112064318 C T 23 64 BRCA TCGA-D8-A1XC OR4D6 SNP Silent 11 59225033 C A 32 54 BRCA TCGA-D8-A1XC DUSP16 SNP Nonsense_Mutation 12 12630318 G A 38 51 BRCA TCGA-D8-A1XC AMHR2 SNP Missense_Mutation 12 53825208 G A 42 56 BRCA TCGA-D8-A1XC FOXA1 DEL Frame_Shift_Del 14 38060755 GCTGCTCC - 46 94 BRCA TCGA-D8-A1XC POMT2 SNP Missense_Mutation 14 77767530 A G 13 92 BRCA TCGA-D8-A1XC ATXN2L SNP Missense_Mutation 16 28844531 C T 31 54 BRCA TCGA-D8-A1XC CLEC18B SNP Missense_Mutation 16 74446108 C T 23 52 BRCA TCGA-D8-A1XC TLK2 SNP Missense_Mutation 17 60678053 A G 10 90 BRCA TCGA-D8-A1XC LOXHD1 SNP Silent 18 44057735 G A 33 58 BRCA TCGA-D8-A1XC TSHZ3 SNP Missense_Mutation 19 31768399 G A 39 89 BRCA TCGA-D8-A1XC MUC16 SNP Missense_Mutation 19 9066614 C A 20 49 BRCA TCGA-D8-A1XC SCN3A SNP Missense_Mutation 2 166012326 G C 41 51 BRCA TCGA-D8-A1XC CCDC141 SNP Missense_Mutation 2 179742731 G A 48 61 BRCA TCGA-D8-A1XC CRNKL1 SNP Missense_Mutation 20 20036596 T A 64 49 BRCA TCGA-D8-A1XC COMMD7 SNP Silent 20 31315779 G A 33 47 BRCA TCGA-D8-A1XC C20orf195 SNP Missense_Mutation 20 62187465 G A 39 50 BRCA TCGA-D8-A1XC TAF1 SNP Missense_Mutation 23 70627446 G A 39 80 BRCA TCGA-D8-A1XC PHLDB2 SNP Missense_Mutation 3 111693313 G T 33 100 BRCA TCGA-D8-A1XC SI SNP Missense_Mutation 3 164755728 T C 49 80 BRCA TCGA-D8-A1XC PCDH10 SNP Silent 4 134073305 C T 21 52 BRCA TCGA-D8-A1XC RHOH SNP Silent 4 40245027 C T 27 48 BRCA TCGA-D8-A1XC HMMR SNP Splice_Site 5 162891728 G A 33 75 BRCA TCGA-D8-A1XC MRPS30 SNP Splice_Site 5 44813385 G A 44 100 BRCA TCGA-D8-A1XC C5orf49 SNP Missense_Mutation 5 7835571 C T 27 48 BRCA TCGA-D8-A1XC PEX7 SNP Missense_Mutation 6 137147511 T G 51 51 BRCA TCGA-D8-A1XC SP4 SNP Missense_Mutation 7 21516732 C A 25 83 BRCA TCGA-D8-A1XC PDE1C SNP Missense_Mutation 7 31912927 T G 49 90 BRCA TCGA-D8-A1XC CDK13 SNP Missense_Mutation 7 40027851 C T 28 70 BRCA TCGA-D8-A1XF HRNR SNP Missense_Mutation 1 152192762 C T 31 51 BRCA TCGA-D8-A1XF FLG SNP Missense_Mutation 1 152278000 C A 24 54 BRCA TCGA-D8-A1XF NLRP3 SNP Missense_Mutation 1 247587581 G T 46 62 BRCA TCGA-D8-A1XF MACF1 SNP Missense_Mutation 1 39908479 G A 46 88 BRCA TCGA-D8-A1XF PPRC1 SNP Missense_Mutation 10 103897671 T A 55 66 BRCA TCGA-D8-A1XF RUFY2 SNP Silent 10 70156614 C T 19 37 BRCA TCGA-D8-A1XF ZNF202 SNP Silent 11 123598959 C T 19 41 BRCA TCGA-D8-A1XF SPTBN2 SNP Missense_Mutation 11 66457401 C T 27 97 BRCA TCGA-D8-A1XF OSBPL8 SNP Missense_Mutation 12 76791544 C T 19 88 BRCA TCGA-D8-A1XF CUL4A SNP Missense_Mutation 13 113898800 G C 33 53 BRCA TCGA-D8-A1XF WDR72 SNP Missense_Mutation 15 53957929 C T 31 54 BRCA TCGA-D8-A1XF THSD4 SNP Nonsense_Mutation 15 72050319 G T 41 95 BRCA TCGA-D8-A1XF MVP SNP Silent 16 29851675 C A 22 70 BRCA TCGA-D8-A1XF CNGB1 SNP Silent 16 57921789 C T 23 27 BRCA TCGA-D8-A1XF TCF4 SNP Silent 18 52928751 G A 38 57 BRCA TCGA-D8-A1XF ARHGAP33 SNP Missense_Mutation 19 36269498 G T 46 65 BRCA TCGA-D8-A1XF RYR1 DEL Splice_site 19 39077216 GGTAAGG - 35 95 BRCA TCGA-D8-A1XF CYP2A13 SNP Silent 19 41596463 G A 39 46 BRCA TCGA-D8-A1XF MED25 SNP Missense_Mutation 19 50333407 G A 38 44 BRCA TCGA-D8-A1XF KLK14 SNP Missense_Mutation 19 51584934 T C 62 53 BRCA TCGA-D8-A1XF GALNT5 SNP Silent 2 158156081 A G 12 55 BRCA TCGA-D8-A1XF ABI2 SNP Missense_Mutation 2 204291989 G A 37 100 BRCA TCGA-D8-A1XF ZDBF2 SNP Silent 2 207175936 G A 37 48 BRCA TCGA-D8-A1XF SLC19A3 SNP Missense_Mutation 2 228564073 C T 31 100 BRCA TCGA-D8-A1XF CD8A SNP Missense_Mutation 2 87017658 T C 55 39 BRCA TCGA-D8-A1XF SLC13A3 SNP Missense_Mutation 20 45228668 G C 38 68 BRCA TCGA-D8-A1XF RSPO4 DEL Splice_site 20 948781 ACTGCCCACAAGA - 6 53 BRCA TCGA-D8-A1XF AP1B1 SNP Silent 22 29727809 C T 23 36 BRCA TCGA-D8-A1XF KCNJ4 SNP Silent 22 38823442 G A 38 44 BRCA TCGA-D8-A1XF MTM1 SNP Missense_Mutation 23 149783132 G T 36 80 BRCA TCGA-D8-A1XF C3orf20 SNP Silent 3 14769950 G T 48 47 BRCA TCGA-D8-A1XF CCDC13 SNP Silent 3 42754739 C T 21 50 BRCA TCGA-D8-A1XF DOCK3 SNP Missense_Mutation 3 51263178 C A 28 98 BRCA TCGA-D8-A1XF TRAM1L1 SNP Silent 4 118005644 C A 19 23 BRCA TCGA-D8-A1XF APC SNP Silent 5 112173496 G A 37 51 BRCA TCGA-D8-A1XF FAM105A SNP Missense_Mutation 5 14601486 G T 45 85 BRCA TCGA-D8-A1XF RAD1 SNP Missense_Mutation 5 34909405 T C 50 89 BRCA TCGA-D8-A1XF KIAA0319 SNP Missense_Mutation 6 24581158 C A 28 54 BRCA TCGA-D8-A1XF DLC1 SNP Missense_Mutation 8 13356703 C T 26 52 BRCA TCGA-D8-A1XF TMEM70 INS Frame_Shift_Ins 8 74888632 - GT 27 55 BRCA TCGA-D8-A1XF ZFHX4 SNP Missense_Mutation 8 77764795 A G 5 76 BRCA TCGA-D8-A1XG ADAM12 SNP Splice_site 10 127734625 C T 22 100 BRCA TCGA-D8-A1XG ELP4 SNP Missense_Mutation 11 31653874 G C 36 49 BRCA TCGA-D8-A1XG SLC22A10 SNP Missense_Mutation 11 63071594 C T 27 57 BRCA TCGA-D8-A1XG PPP1CA SNP Silent 11 67166579 T A 55 44 BRCA TCGA-D8-A1XG NPAS3 SNP Silent 14 34269262 G A 39 50 BRCA TCGA-D8-A1XG FOXA1 DEL Frame_Shift_Del 14 38061884 GTTCATG - 36 64 BRCA TCGA-D8-A1XG LTBP2 SNP Missense_Mutation 14 74995708 C T 26 94 BRCA TCGA-D8-A1XG SQRDL SNP Missense_Mutation 15 45954163 A C 14 87 BRCA TCGA-D8-A1XG IL4R SNP Missense_Mutation 16 27353480 G A 37 59 BRCA TCGA-D8-A1XG C3 SNP Missense_Mutation 19 6711025 C A 24 32 BRCA TCGA-D8-A1XG PXDN SNP Missense_Mutation 2 1670036 G T 38 94 BRCA TCGA-D8-A1XG HSPD1 DEL Frame_Shift_Del 2 198351864 TCTGCTGTAG - 62 89 BRCA TCGA-D8-A1XG KANSL3 SNP Silent 2 97302834 T C 55 48 BRCA TCGA-D8-A1XG RBL1 SNP Silent 20 35689643 C T 29 61 BRCA TCGA-D8-A1XG ATP2B2 SNP Silent 3 10370591 G A 37 63 BRCA TCGA-D8-A1XG PHLDB2 SNP Missense_Mutation 3 111632438 G T 41 52 BRCA TCGA-D8-A1XG SEMA5B SNP Missense_Mutation 3 122645475 G T 41 62 BRCA TCGA-D8-A1XG C3orf79 SNP Missense_Mutation 3 153203844 A C 6 52 BRCA TCGA-D8-A1XG SETD7 SNP Missense_Mutation 4 140454468 T A 59 93 BRCA TCGA-D8-A1XG CLDN22 SNP Missense_Mutation 4 184240759 G T 48 69 BRCA TCGA-D8-A1XG FBN2 SNP Silent 5 127597566 C T 26 59 BRCA TCGA-D8-A1XG AFAP1L1 SNP Missense_Mutation 5 148709274 C T 26 98 BRCA TCGA-D8-A1XG MCTP1 SNP Missense_Mutation 5 94619756 C A 24 54 BRCA TCGA-D8-A1XG LRRC4 SNP Missense_Mutation 7 127670674 A C 14 81 BRCA TCGA-D8-A1XG NIPAL2 DEL Frame_Shift_Del 8 99217462 AC - 2 71 BRCA TCGA-D8-A1XG ANGPTL2 SNP Missense_Mutation 9 129870656 C T 31 85 BRCA TCGA-D8-A1XJ COL11A1 SNP Missense_Mutation 1 103540280 C A 17 100 BRCA TCGA-D8-A1XJ SDE2 SNP Silent 1 226180127 A G 7 20 BRCA TCGA-D8-A1XJ RYR2 SNP Missense_Mutation 1 237675055 G A 38 86 BRCA TCGA-D8-A1XJ TXLNA SNP Missense_Mutation 1 32647073 G A 41 91 BRCA TCGA-D8-A1XJ LCK SNP Silent 1 32742227 G A 37 47 BRCA TCGA-D8-A1XJ GJA9 SNP Silent 1 39341552 G T 43 57 BRCA TCGA-D8-A1XJ NASP SNP Silent 1 46079800 G A 41 51 BRCA TCGA-D8-A1XJ L1TD1 SNP Missense_Mutation 1 62672320 G T 36 34 BRCA TCGA-D8-A1XJ FANK1 SNP Nonsense_Mutation 10 127697978 C T 25 64 BRCA TCGA-D8-A1XJ EBF3 SNP Silent 10 131671777 G A 40 54 BRCA TCGA-D8-A1XJ PARD3 SNP Missense_Mutation 10 34649154 C T 29 89 BRCA TCGA-D8-A1XJ DDX6 SNP Missense_Mutation 11 118629524 C T 29 100 BRCA TCGA-D8-A1XJ NLRX1 SNP Missense_Mutation 11 119043070 C T 31 49 BRCA TCGA-D8-A1XJ MICALCL SNP Splice_Site 11 12371384 G A 33 75 BRCA TCGA-D8-A1XJ KCNQ1 SNP Missense_Mutation 11 2683237 G A 45 63 BRCA TCGA-D8-A1XJ NDUFS8 SNP Missense_Mutation 11 67803732 G A 37 78 BRCA TCGA-D8-A1XJ CACNA1C SNP Silent 12 2558201 C A 31 51 BRCA TCGA-D8-A1XJ PPHLN1 DEL Frame_Shift_Del 12 42778795 AG - 3 55 BRCA TCGA-D8-A1XJ OR6C74 SNP Silent 12 55641891 C T 32 48 BRCA TCGA-D8-A1XJ APEX1 SNP Missense_Mutation 14 20924089 G A 33 62 BRCA TCGA-D8-A1XJ PNN SNP Missense_Mutation 14 39648302 G A 39 99 BRCA TCGA-D8-A1XJ STX4 SNP Missense_Mutation 16 31050965 C T 27 83 BRCA TCGA-D8-A1XJ MYH8 SNP Missense_Mutation 17 10307784 C T 32 100 BRCA TCGA-D8-A1XJ HDAC5 SNP Missense_Mutation 17 42168760 G A 33 80 BRCA TCGA-D8-A1XJ ADAM11 SNP Missense_Mutation 17 42850750 G A 37 96 BRCA TCGA-D8-A1XJ MAPT SNP Missense_Mutation 17 44073872 G C 41 72 BRCA TCGA-D8-A1XJ DVL2 SNP Silent 17 7129292 G A 43 47 BRCA TCGA-D8-A1XJ OTOP2 SNP Missense_Mutation 17 72926997 G A 37 98 BRCA TCGA-D8-A1XJ TP53 SNP Missense_Mutation 17 7577094 G C 39 66 BRCA TCGA-D8-A1XJ NEDD4L SNP Missense_Mutation 18 56054707 A C 4 91 BRCA TCGA-D8-A1XJ ANKRD12 SNP Missense_Mutation 18 9254875 A G 8 93 BRCA TCGA-D8-A1XJ ZNF563 SNP Nonsense_Mutation 19 12429836 G A 37 53 BRCA TCGA-D8-A1XJ OR1I1 SNP Missense_Mutation 19 15198028 C T 19 60 BRCA TCGA-D8-A1XJ ARHGEF1 SNP Missense_Mutation 19 42399493 C T 30 48 BRCA TCGA-D8-A1XJ ZNF551 DEL Frame_Shift_Del 19 58197963 AGAT - 3 58 BRCA TCGA-D8-A1XJ FUT5 SNP Silent 19 5866759 G A 40 32 BRCA TCGA-D8-A1XJ GPR45 SNP Nonsense_Mutation 2 105859375 C T 23 62 BRCA TCGA-D8-A1XJ PTPN18 SNP Silent 2 131127382 C A 29 44 BRCA TCGA-D8-A1XJ CCDC150 SNP Missense_Mutation 2 197521850 C T 31 69 BRCA TCGA-D8-A1XJ EFR3B SNP Missense_Mutation 2 25314227 G A 35 80 BRCA TCGA-D8-A1XJ CAD SNP Missense_Mutation 2 27445851 G T 46 91 BRCA TCGA-D8-A1XJ SLC4A5 SNP Missense_Mutation 2 74474339 A G 12 87 BRCA TCGA-D8-A1XJ FAM65C SNP Silent 20 49219050 C T 32 54 BRCA TCGA-D8-A1XJ TPD52L2 SNP Missense_Mutation 20 62505106 C T 30 61 BRCA TCGA-D8-A1XJ CLDN17 SNP Missense_Mutation 21 31538298 G A 40 35 BRCA TCGA-D8-A1XJ ARHGAP6 SNP Missense_Mutation 23 11206973 A C 4 85 BRCA TCGA-D8-A1XJ BCORL1 DEL In_Frame_Del 23 129147257 AGA - 11 77 BRCA TCGA-D8-A1XJ PIR SNP Missense_Mutation 23 15425651 G A 40 76 BRCA TCGA-D8-A1XJ RPS6KA3 SNP Missense_Mutation 23 20212321 G A 40 84 BRCA TCGA-D8-A1XJ MAGEB18 SNP Silent 23 26157853 C T 28 55 BRCA TCGA-D8-A1XJ CYSLTR1 SNP Silent 23 77528896 G T 47 62 BRCA TCGA-D8-A1XJ DZIP1L SNP Nonsense_Mutation 3 137807223 G A 45 66 BRCA TCGA-D8-A1XJ PRR23B SNP Missense_Mutation 3 138739098 C T 19 52 BRCA TCGA-D8-A1XJ CLSTN2 SNP Missense_Mutation 3 139894828 C T 29 80 BRCA TCGA-D8-A1XJ NDUFB5 SNP Missense_Mutation 3 179322679 C T 31 53 BRCA TCGA-D8-A1XJ MUC4 SNP Missense_Mutation 3 195512698 G A 42 57 BRCA TCGA-D8-A1XJ KIAA0226 SNP Missense_Mutation 3 197402344 C T 29 100 BRCA TCGA-D8-A1XJ LRIG1 SNP Missense_Mutation 3 66433747 G A 40 56 BRCA TCGA-D8-A1XJ PPA2 SNP Missense_Mutation 4 106395125 G A 37 65 BRCA TCGA-D8-A1XJ ADAD1 DEL Frame_Shift_Del 4 123332537 AA - 13 68 BRCA TCGA-D8-A1XJ SPRY1 SNP Missense_Mutation 4 124323620 C T 31 65 BRCA TCGA-D8-A1XJ ANXA10 SNP Missense_Mutation 4 169085364 G A 45 71 BRCA TCGA-D8-A1XJ VCAN SNP Missense_Mutation 5 82817555 G T 35 49 BRCA TCGA-D8-A1XJ SYNGAP1 SNP Missense_Mutation 6 33403296 C T 17 79 BRCA TCGA-D8-A1XJ MAPK13 SNP Missense_Mutation 6 36106757 G A 45 99 BRCA TCGA-D8-A1XJ COL12A1 SNP Silent 6 75893097 G A 46 63 BRCA TCGA-D8-A1XJ BACH2 SNP Missense_Mutation 6 90718472 C T 23 97 BRCA TCGA-D8-A1XJ HOXA4 SNP Missense_Mutation 7 27168854 G A 41 71 BRCA TCGA-D8-A1XJ LANCL2 SNP Missense_Mutation 7 55466215 A G 4 53 BRCA TCGA-D8-A1XJ KIAA0196 SNP Nonsense_Mutation 8 126059486 G A 37 78 BRCA TCGA-D8-A1XJ ERICH1 SNP Splice_Site 8 614677 C G 32 78 BRCA TCGA-D8-A1XJ WDR85 SNP Silent 9 140449871 C T 32 40 BRCA TCGA-D8-A1XJ TEK SNP Silent 9 27183605 C G 30 44 BRCA TCGA-D8-A1XJ FAM75A2 SNP Missense_Mutation 9 39890233 G T 45 52 BRCA TCGA-D8-A1XL CDC14A SNP Missense_Mutation 1 100961587 C A 25 84 BRCA TCGA-D8-A1XL FLG SNP Missense_Mutation 1 152275600 T C 58 49 BRCA TCGA-D8-A1XL KCNN3 SNP Missense_Mutation 1 154841911 G T 41 63 BRCA TCGA-D8-A1XL LAMC1 SNP Missense_Mutation 1 182993128 G A 37 70 BRCA TCGA-D8-A1XL HMCN1 SNP Missense_Mutation 1 186122990 G A 40 52 BRCA TCGA-D8-A1XL FAM5C SNP Missense_Mutation 1 190067803 A T 8 86 BRCA TCGA-D8-A1XL CDC42BPA SNP Missense_Mutation 1 227288919 G T 44 72 BRCA TCGA-D8-A1XL TRIM67 SNP Missense_Mutation 1 231344976 C A 20 73 BRCA TCGA-D8-A1XL CSMD2 SNP Splice_Site 1 33985410 A G 14 86 BRCA TCGA-D8-A1XL TTC39A SNP Missense_Mutation 1 51761833 T C 51 55 BRCA TCGA-D8-A1XL DAB1 INS Splice_site 1 57491653 - G 19 85 BRCA TCGA-D8-A1XL INPP5F SNP Missense_Mutation 10 121587065 T C 62 71 BRCA TCGA-D8-A1XL FGFR2 SNP Missense_Mutation 10 123258034 A T 12 55 BRCA TCGA-D8-A1XL ZRANB1 SNP Missense_Mutation 10 126673532 G C 33 83 BRCA TCGA-D8-A1XL C10orf71 SNP Missense_Mutation 10 50530920 A C 1 36 BRCA TCGA-D8-A1XL HTR3B SNP Silent 11 113815320 C T 24 54 BRCA TCGA-D8-A1XL C11orf63 SNP Missense_Mutation 11 122756780 G C 33 81 BRCA TCGA-D8-A1XL KIRREL3 SNP Silent 11 126396467 G A 40 42 BRCA TCGA-D8-A1XL KRTAP5-6 DEL In_Frame_Del 11 1718512 GGCTGTGGGGGCTGTGGCTCT - 39 51 BRCA TCGA-D8-A1XL OR5D13 SNP Missense_Mutation 11 55541722 G A 34 57 BRCA TCGA-D8-A1XL OR5M9 SNP Missense_Mutation 11 56230715 T C 54 52 BRCA TCGA-D8-A1XL OR1S2 SNP Missense_Mutation 11 57970919 C A 24 47 BRCA TCGA-D8-A1XL OR5B12 SNP Missense_Mutation 11 58207097 G T 33 73 BRCA TCGA-D8-A1XL VWCE SNP Missense_Mutation 11 61026440 G C 33 74 BRCA TCGA-D8-A1XL DCHS1 SNP Missense_Mutation 11 6643297 G C 35 96 BRCA TCGA-D8-A1XL OR6A2 SNP Missense_Mutation 11 6816236 G A 37 70 BRCA TCGA-D8-A1XL IL18BP SNP Splice_Site 11 71712371 G C 44 69 BRCA TCGA-D8-A1XL SELPLG SNP Splice_site 12 109017662 G A 46 50 BRCA TCGA-D8-A1XL DNAH10 SNP Missense_Mutation 12 124343746 C T 19 100 BRCA TCGA-D8-A1XL DNAH10 SNP Missense_Mutation 12 124418005 C T 17 99 BRCA TCGA-D8-A1XL TMEM132C SNP Missense_Mutation 12 129028531 T C 55 77 BRCA TCGA-D8-A1XL HSD17B6 SNP Missense_Mutation 12 57167880 C G 24 62 BRCA TCGA-D8-A1XL PTPRB SNP Silent 12 70964942 T G 49 44 BRCA TCGA-D8-A1XL CD163L1 SNP Missense_Mutation 12 7548822 G C 48 48 BRCA TCGA-D8-A1XL PCK2 SNP Silent 14 24567421 C A 22 55 BRCA TCGA-D8-A1XL MDGA2 SNP Missense_Mutation 14 47687332 T A 58 90 BRCA TCGA-D8-A1XL KIAA0586 SNP Splice_site 14 58925191 A G 11 51 BRCA TCGA-D8-A1XL SPTB SNP Missense_Mutation 14 65270474 G A 38 85 BRCA TCGA-D8-A1XL C14orf166B SNP Missense_Mutation 14 77323744 A G 16 56 BRCA TCGA-D8-A1XL CCDC88C SNP Splice_Site 14 91810002 C G 24 96 BRCA TCGA-D8-A1XL RSL1D1 SNP Missense_Mutation 16 11940658 C T 29 92 BRCA TCGA-D8-A1XL EVI2B SNP Missense_Mutation 17 29632390 G T 48 54 BRCA TCGA-D8-A1XL KRT31 SNP Missense_Mutation 17 39550341 C G 17 76 BRCA TCGA-D8-A1XL NLRP1 SNP Silent 17 5461874 G A 36 51 BRCA TCGA-D8-A1XL LLGL2 SNP Missense_Mutation 17 73555430 C G 25 73 BRCA TCGA-D8-A1XL TP53 SNP Missense_Mutation 17 7577539 G A 39 60 BRCA TCGA-D8-A1XL AURKB SNP Missense_Mutation 17 8110509 A G 12 87 BRCA TCGA-D8-A1XL ATG4D SNP Missense_Mutation 19 10659619 A T 10 59 BRCA TCGA-D8-A1XL CPAMD8 SNP Missense_Mutation 19 17039931 A T 9 51 BRCA TCGA-D8-A1XL ACTL9 SNP Missense_Mutation 19 8808499 C G 17 70 BRCA TCGA-D8-A1XL ZNF177 SNP Missense_Mutation 19 9492136 T G 56 80 BRCA TCGA-D8-A1XL NEUROD1 SNP Missense_Mutation 2 182542979 C A 25 67 BRCA TCGA-D8-A1XL EPT1 SNP Missense_Mutation 2 26587746 T C 64 87 BRCA TCGA-D8-A1XL KRTAP15-1 SNP Missense_Mutation 21 31812853 T A 50 42 BRCA TCGA-D8-A1XL KCNJ15 SNP Missense_Mutation 21 39671727 C A 21 64 BRCA TCGA-D8-A1XL PLA2G3 SNP Missense_Mutation 22 31532946 G T 47 63 BRCA TCGA-D8-A1XL IL13RA2 SNP Missense_Mutation 23 114242525 T C 54 65 BRCA TCGA-D8-A1XL NKRF SNP Missense_Mutation 23 118724267 C T 27 77 BRCA TCGA-D8-A1XL HS6ST2 SNP Missense_Mutation 23 131762777 A C 9 68 BRCA TCGA-D8-A1XL CTPS2 SNP Splice_Site 23 16711263 C G 18 94 BRCA TCGA-D8-A1XL MXRA5 SNP Missense_Mutation 23 3228241 C T 19 48 BRCA TCGA-D8-A1XL POPDC2 SNP Missense_Mutation 3 119378865 G T 46 62 BRCA TCGA-D8-A1XL POLQ SNP Missense_Mutation 3 121217489 G C 36 69 BRCA TCGA-D8-A1XL IFT122 SNP Missense_Mutation 3 129195606 C G 20 100 BRCA TCGA-D8-A1XL PIK3CA SNP Missense_Mutation 3 178927980 T C 55 89 BRCA TCGA-D8-A1XL STAC SNP Missense_Mutation 3 36485094 A G 3 90 BRCA TCGA-D8-A1XL ITIH1 SNP Missense_Mutation 3 52822303 C T 28 64 BRCA TCGA-D8-A1XL AGXT2L1 SNP Missense_Mutation 4 109672126 T A 52 72 BRCA TCGA-D8-A1XL PRDM5 SNP Nonsense_Mutation 4 121739572 C A 30 96 BRCA TCGA-D8-A1XL ODZ3 SNP Missense_Mutation 4 183714346 G A 38 98 BRCA TCGA-D8-A1XL LRRC66 INS Frame_Shift_Ins 4 52861781 - A 61 51 BRCA TCGA-D8-A1XL LNX1 SNP Missense_Mutation 4 54362419 C G 32 75 BRCA TCGA-D8-A1XL BCLAF1 DEL In_Frame_Del 6 136599066 CGGCCC - 19 74 BRCA TCGA-D8-A1XL NHLRC1 SNP Missense_Mutation 6 18122254 T G 50 71 BRCA TCGA-D8-A1XL SLC17A1 SNP Missense_Mutation 6 25801134 C G 30 70 BRCA TCGA-D8-A1XL OR2B2 SNP Missense_Mutation 6 27879388 G A 46 79 BRCA TCGA-D8-A1XL GNL1 SNP Silent 6 30513924 C T 32 65 BRCA TCGA-D8-A1XL UBR2 SNP Silent 6 42585064 C T 23 49 BRCA TCGA-D8-A1XL AARS2 SNP Missense_Mutation 6 44274104 C T 31 96 BRCA TCGA-D8-A1XL BAI3 SNP Missense_Mutation 6 69348974 C A 20 65 BRCA TCGA-D8-A1XL MDN1 DEL In_Frame_Del 6 90390440 CAGCGCCCT - 25 49 BRCA TCGA-D8-A1XL ZNF716 SNP Missense_Mutation 7 57528859 A G 8 72 BRCA TCGA-D8-A1XL KIAA1324L SNP Missense_Mutation 7 86537782 C A 32 77 BRCA TCGA-D8-A1XL C7orf63 SNP Silent 7 89939392 G A 44 86 BRCA TCGA-D8-A1XL ADCY8 SNP Missense_Mutation 8 131955636 C G 25 77 BRCA TCGA-D8-A1XL DENND3 SNP Silent 8 142161849 C T 30 49 BRCA TCGA-D8-A1XL PRPF4 SNP Missense_Mutation 9 116053913 G C 41 52 BRCA TCGA-D8-A1XL ADAMTSL1 SNP Missense_Mutation 9 18829873 A T 8 58 BRCA TCGA-D8-A1XL RUSC2 SNP Missense_Mutation 9 35558279 A G 11 71 BRCA TCGA-D8-A1XM COL11A1 SNP Splice_Site 1 103461544 C T 18 98 BRCA TCGA-D8-A1XM CD2 SNP Missense_Mutation 1 117311125 A C 9 56 BRCA TCGA-D8-A1XM FAM78B SNP Silent 1 166135414 G A 38 54 BRCA TCGA-D8-A1XM LRRC41 SNP Missense_Mutation 1 46751244 C T 32 61 BRCA TCGA-D8-A1XM DOCK7 SNP Silent 1 62970400 G C 45 52 BRCA TCGA-D8-A1XM KLHL17 SNP Missense_Mutation 1 897038 G A 40 98 BRCA TCGA-D8-A1XM SEC23IP SNP Missense_Mutation 10 121663612 G C 33 58 BRCA TCGA-D8-A1XM CUZD1 SNP Nonsense_Mutation 10 124593252 C T 30 73 BRCA TCGA-D8-A1XM GRID1 SNP Missense_Mutation 10 87379751 C T 19 98 BRCA TCGA-D8-A1XM SORL1 SNP Missense_Mutation 11 121393316 C T 29 100 BRCA TCGA-D8-A1XM FBXO3 SNP Nonsense_Mutation 11 33763554 G C 45 79 BRCA TCGA-D8-A1XM AMBRA1 SNP Silent 11 46568822 C T 29 63 BRCA TCGA-D8-A1XM OR4C15 SNP Missense_Mutation 11 55322666 C A 32 91 BRCA TCGA-D8-A1XM WEE1 SNP Missense_Mutation 11 9608368 G T 45 62 BRCA TCGA-D8-A1XM KRT6B SNP Missense_Mutation 12 52844244 C T 19 64 BRCA TCGA-D8-A1XM DCD SNP Missense_Mutation 12 55039438 A T 2 53 BRCA TCGA-D8-A1XM HTR2A SNP Silent 13 47409635 C A 29 78 BRCA TCGA-D8-A1XM CILP SNP Silent 15 65496643 C T 29 54 BRCA TCGA-D8-A1XM SMG1 SNP Nonsense_Mutation 16 18839447 G T 45 78 BRCA TCGA-D8-A1XM GPR97 SNP Silent 16 57710130 G A 35 58 BRCA TCGA-D8-A1XM MYO1C SNP Missense_Mutation 17 1374587 G A 40 69 BRCA TCGA-D8-A1XM SLFN14 SNP Silent 17 33875444 C T 23 51 BRCA TCGA-D8-A1XM ERBB2 SNP Missense_Mutation 17 37880220 T C 63 90 BRCA TCGA-D8-A1XM ACSF2 SNP Silent 17 48541257 G A 37 35 BRCA TCGA-D8-A1XM MBTD1 DEL In_Frame_Del 17 49297759 AGA - 7 93 BRCA TCGA-D8-A1XM GPR142 SNP Silent 17 72366697 C T 19 43 BRCA TCGA-D8-A1XM ZBTB4 SNP Missense_Mutation 17 7370012 C T 23 74 BRCA TCGA-D8-A1XM ZFP14 SNP Missense_Mutation 19 36832278 C T 29 50 BRCA TCGA-D8-A1XM CACNG7 SNP Missense_Mutation 19 54418757 C T 31 88 BRCA TCGA-D8-A1XM DDX18 SNP Missense_Mutation 2 118582184 G A 37 99 BRCA TCGA-D8-A1XM DPP4 SNP Missense_Mutation 2 162929936 C T 19 74 BRCA TCGA-D8-A1XM LOXL3 SNP Silent 2 74763222 G A 33 61 BRCA TCGA-D8-A1XM INPP4A SNP Silent 2 99204011 G A 45 62 BRCA TCGA-D8-A1XM MRPS26 SNP Missense_Mutation 20 3028487 T G 59 60 BRCA TCGA-D8-A1XM EP300 SNP Missense_Mutation 22 41545883 C T 31 98 BRCA TCGA-D8-A1XM BCORL1 SNP Missense_Mutation 23 129150080 C T 19 52 BRCA TCGA-D8-A1XM F8 SNP Silent 23 154182270 C T 32 67 BRCA TCGA-D8-A1XM MXRA5 SNP Missense_Mutation 23 3238221 C A 20 56 BRCA TCGA-D8-A1XM NLGN4X SNP Missense_Mutation 23 5811184 T A 55 36 BRCA TCGA-D8-A1XM ZMYM3 SNP Silent 23 70462884 G A 44 79 BRCA TCGA-D8-A1XM RPS4X SNP Missense_Mutation 23 71494957 G C 33 70 BRCA TCGA-D8-A1XM DIAPH2 SNP Missense_Mutation 23 96185793 T A 49 85 BRCA TCGA-D8-A1XM ATP2B2 SNP Missense_Mutation 3 10400565 C T 23 97 BRCA TCGA-D8-A1XM XPC SNP Missense_Mutation 3 14197851 C T 32 99 BRCA TCGA-D8-A1XM MED12L SNP Silent 3 151075105 C A 29 65 BRCA TCGA-D8-A1XM PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-D8-A1XM VPRBP SNP Missense_Mutation 3 51458364 T C 52 90 BRCA TCGA-D8-A1XM ERVMER34-1 INS Frame_Shift_Ins 4 53610788 - A 17 44 BRCA TCGA-D8-A1XM NUDT12 SNP Splice_Site 5 102888118 C T 24 98 BRCA TCGA-D8-A1XM AP3B1 SNP Missense_Mutation 5 77524009 G A 33 59 BRCA TCGA-D8-A1XM SLC22A16 SNP Missense_Mutation 6 110778105 T G 63 87 BRCA TCGA-D8-A1XM MED23 SNP Nonsense_Mutation 6 131912640 G A 37 78 BRCA TCGA-D8-A1XM PNLDC1 SNP Silent 6 160232782 C T 29 69 BRCA TCGA-D8-A1XM MLLT4 SNP Missense_Mutation 6 168352584 G A 36 84 BRCA TCGA-D8-A1XM DST SNP Missense_Mutation 6 56437729 C T 23 85 BRCA TCGA-D8-A1XM DGKB SNP Missense_Mutation 7 14880851 G A 37 83 BRCA TCGA-D8-A1XM GPSM1 SNP Missense_Mutation 9 139229013 G A 37 95 BRCA TCGA-D8-A1XO MCL1 SNP Silent 1 150551359 A T 5 45 BRCA TCGA-D8-A1XO ITGB3BP SNP Missense_Mutation 1 63920077 C G 32 54 BRCA TCGA-D8-A1XO KCNMA1 SNP Nonsense_Mutation 10 78943191 T A 55 79 BRCA TCGA-D8-A1XO ATM SNP Silent 11 108121488 G T 48 39 BRCA TCGA-D8-A1XO CDH1 SNP Nonsense_Mutation 16 68772218 C T 21 53 BRCA TCGA-D8-A1XO ZFHX3 SNP Nonsense_Mutation 16 72832413 G A 45 100 BRCA TCGA-D8-A1XO FKBP8 SNP Missense_Mutation 19 18650372 C A 29 90 BRCA TCGA-D8-A1XO NPHS1 SNP Silent 19 36321761 G A 40 29 BRCA TCGA-D8-A1XO PPM1B SNP Silent 2 44429052 C T 29 56 BRCA TCGA-D8-A1XO PDE9A SNP Missense_Mutation 21 44151970 G A 39 46 BRCA TCGA-D8-A1XO RNF215 SNP Missense_Mutation 22 30775744 A T 7 84 BRCA TCGA-D8-A1XO NXF5 SNP Silent 23 101096721 G A 33 59 BRCA TCGA-D8-A1XO AR SNP Silent 23 66765081 C T 27 52 BRCA TCGA-D8-A1XO PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-D8-A1XO FAT2 SNP Nonsense_Mutation 5 150924228 G A 47 57 BRCA TCGA-D8-A1XO POPDC3 SNP Missense_Mutation 6 105609402 G A 40 58 BRCA TCGA-D8-A1XO MLL5 SNP Missense_Mutation 7 104719345 G T 48 100 BRCA TCGA-D8-A1XO STK31 SNP Missense_Mutation 7 23792363 A G 10 55 BRCA TCGA-D8-A1XO AQP7 SNP Silent 9 33387007 G A 37 44 BRCA TCGA-D8-A1XR DENND2D SNP Missense_Mutation 1 111742312 A G 6 87 BRCA TCGA-D8-A1XR TPM3 SNP Missense_Mutation 1 154163748 C A 24 87 BRCA TCGA-D8-A1XR ETV3L SNP Missense_Mutation 1 157069272 C T 26 51 BRCA TCGA-D8-A1XR SMC3 SNP Missense_Mutation 10 112361451 A G 16 77 BRCA TCGA-D8-A1XR QSER1 SNP Missense_Mutation 11 32954399 C T 32 62 BRCA TCGA-D8-A1XR CIT SNP Missense_Mutation 12 120156107 C T 25 70 BRCA TCGA-D8-A1XR CUL4A SNP Silent 13 113897392 G A 33 65 BRCA TCGA-D8-A1XR MAP2K3 SNP Missense_Mutation 17 21206523 G A 34 100 BRCA TCGA-D8-A1XR KCNJ12 SNP Missense_Mutation 17 21319592 G A 38 100 BRCA TCGA-D8-A1XR MRPL27 SNP Silent 17 48447871 G A 47 49 BRCA TCGA-D8-A1XR ZNF714 SNP Missense_Mutation 19 21299748 T A 60 36 BRCA TCGA-D8-A1XR LEUTX SNP Silent 19 40275187 C T 31 52 BRCA TCGA-D8-A1XR PEG3 SNP Missense_Mutation 19 57328905 C T 23 60 BRCA TCGA-D8-A1XR DNER SNP Silent 2 230312186 G T 35 46 BRCA TCGA-D8-A1XR DSCAM SNP Missense_Mutation 21 41741044 C T 27 100 BRCA TCGA-D8-A1XR DIP2A SNP Missense_Mutation 21 47965866 A T 8 53 BRCA TCGA-D8-A1XR EIF4ENIF1 INS Frame_Shift_Ins 22 31867837 - T 16 87 BRCA TCGA-D8-A1XR FBXO7 SNP Missense_Mutation 22 32889121 G C 44 50 BRCA TCGA-D8-A1XR FAM19A5 SNP Missense_Mutation 22 49042480 G A 38 93 BRCA TCGA-D8-A1XR SH3KBP1 SNP Missense_Mutation 23 19560229 G A 38 57 BRCA TCGA-D8-A1XR PHF16 SNP Splice_site 23 46913561 G A 46 95 BRCA TCGA-D8-A1XR P2RY10 SNP Missense_Mutation 23 78216289 T A 52 74 BRCA TCGA-D8-A1XR MUC4 SNP Missense_Mutation 3 195507529 A G 14 47 BRCA TCGA-D8-A1XR BSN SNP Missense_Mutation 3 49694289 C T 19 77 BRCA TCGA-D8-A1XR KIAA1045 SNP Missense_Mutation 9 34977197 T C 63 81 BRCA TCGA-D8-A1XS PM20D1 SNP Silent 1 205813220 G A 37 53 BRCA TCGA-D8-A1XS DNTTIP2 SNP Missense_Mutation 1 94337761 C A 21 96 BRCA TCGA-D8-A1XS RRM1 SNP Missense_Mutation 11 4127418 C G 32 96 BRCA TCGA-D8-A1XS BEST1 SNP Silent 11 61725644 C T 32 67 BRCA TCGA-D8-A1XS IRF8 SNP Silent 16 85952387 C T 31 50 BRCA TCGA-D8-A1XS ABCC3 DEL Frame_Shift_Del 17 48755424 CCCATTTCCT - 22 52 BRCA TCGA-D8-A1XS C17orf77 SNP Missense_Mutation 17 72588199 C T 27 50 BRCA TCGA-D8-A1XS RIF1 SNP Missense_Mutation 2 152320011 A G 4 65 BRCA TCGA-D8-A1XS THADA SNP Missense_Mutation 2 43798926 A C 6 66 BRCA TCGA-D8-A1XS SNAP25 SNP Missense_Mutation 20 10256162 G A 38 97 BRCA TCGA-D8-A1XS ASCC2 SNP Missense_Mutation 22 30210708 T G 63 57 BRCA TCGA-D8-A1XS IGSF10 SNP Missense_Mutation 3 151163762 G T 48 48 BRCA TCGA-D8-A1XS P2RY1 SNP Silent 3 152554180 C T 19 43 BRCA TCGA-D8-A1XS SLC7A14 SNP Missense_Mutation 3 170244644 G A 40 80 BRCA TCGA-D8-A1XS PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-D8-A1XS C5orf52 SNP Silent 5 157098676 C A 31 45 BRCA TCGA-D8-A1XS MYLIP SNP Missense_Mutation 6 16145378 T A 55 71 BRCA TCGA-D8-A1XS CAV1 INS Frame_Shift_Ins 7 116165237 - CC 42 49 BRCA TCGA-D8-A1XS ST3GAL1 SNP Silent 8 134477071 G A 47 51 BRCA TCGA-D8-A1XS PLEKHA2 SNP Silent 8 38775523 C T 32 100 BRCA TCGA-D8-A1XS COL15A1 SNP Missense_Mutation 9 101767249 G T 47 43 BRCA TCGA-D8-A1XS GOLGA2 SNP Silent 9 131024001 C T 28 61 BRCA TCGA-D8-A1XT BCL9 SNP Missense_Mutation 1 147087614 C A 28 100 BRCA TCGA-D8-A1XT FLG SNP Silent 1 152280540 C T 20 45 BRCA TCGA-D8-A1XT CCT3 SNP Missense_Mutation 1 156288708 C T 27 82 BRCA TCGA-D8-A1XT PTCHD3 DEL In_Frame_Del 10 27702894 GGGGTGCATCGTCCAGCTCCAGCGGCAGGC - 35 54 BRCA TCGA-D8-A1XT OR6T1 SNP Missense_Mutation 11 123813896 G T 41 68 BRCA TCGA-D8-A1XT BRSK2 SNP Silent 11 1477889 C T 19 50 BRCA TCGA-D8-A1XT OR51F2 SNP Missense_Mutation 11 4842865 G A 33 81 BRCA TCGA-D8-A1XT SPTBN2 SNP Missense_Mutation 11 66463885 C G 29 96 BRCA TCGA-D8-A1XT MAP6 SNP Silent 11 75298416 G A 39 40 BRCA TCGA-D8-A1XT MARS SNP Missense_Mutation 12 57908826 G A 42 76 BRCA TCGA-D8-A1XT HMGB1 SNP Missense_Mutation 13 31037698 C G 20 67 BRCA TCGA-D8-A1XT ADAMTS7 SNP Silent 15 79068549 G T 38 57 BRCA TCGA-D8-A1XT RPGRIP1L SNP Missense_Mutation 16 53686660 C A 19 48 BRCA TCGA-D8-A1XT TP53 SNP Missense_Mutation 17 7577112 C G 25 94 BRCA TCGA-D8-A1XT DSEL SNP Nonsense_Mutation 18 65178250 C T 21 64 BRCA TCGA-D8-A1XT MBP SNP Missense_Mutation 18 74701956 G A 39 74 BRCA TCGA-D8-A1XT ZNF419 SNP Missense_Mutation 19 58003544 C T 24 54 BRCA TCGA-D8-A1XT POTEI SNP Silent 2 131221169 G A 38 50 BRCA TCGA-D8-A1XT SCN1A SNP Missense_Mutation 2 166847987 C T 31 64 BRCA TCGA-D8-A1XT NBEAL1 SNP Silent 2 204037478 T G 56 64 BRCA TCGA-D8-A1XT CCDC85A SNP Missense_Mutation 2 56420362 G A 38 63 BRCA TCGA-D8-A1XT AUP1 SNP Silent 2 74754622 A G 4 53 BRCA TCGA-D8-A1XT YTHDF1 SNP Missense_Mutation 20 61834555 G T 35 88 BRCA TCGA-D8-A1XT APOBEC3C SNP Missense_Mutation 22 39414291 G A 41 49 BRCA TCGA-D8-A1XT RHOXF2 SNP Missense_Mutation 23 119293091 G A 39 52 BRCA TCGA-D8-A1XT PHKA1 SNP Missense_Mutation 23 71830973 T C 57 55 BRCA TCGA-D8-A1XT DVL3 SNP Missense_Mutation 3 183882690 T A 63 53 BRCA TCGA-D8-A1XT TNIP3 SNP Silent 4 122078381 C T 31 53 BRCA TCGA-D8-A1XT TRPC3 SNP Missense_Mutation 4 122853631 C T 23 100 BRCA TCGA-D8-A1XT PCDH10 SNP Nonsense_Mutation 4 134072136 C T 21 67 BRCA TCGA-D8-A1XT FGFR4 SNP Nonsense_Mutation 5 176519685 C G 18 75 BRCA TCGA-D8-A1XT EXOC3 SNP Missense_Mutation 5 465362 G A 38 58 BRCA TCGA-D8-A1XT C6orf170 SNP Missense_Mutation 6 121631945 C T 30 76 BRCA TCGA-D8-A1XT OR2A7 SNP Silent 7 143956461 T C 55 46 BRCA TCGA-D8-A1XT DLX6 SNP Missense_Mutation 7 96639271 G C 36 64 BRCA TCGA-D8-A1XT TRPA1 SNP Missense_Mutation 8 72973917 G A 33 58 BRCA TCGA-D8-A1XT TLR4 SNP Missense_Mutation 9 120476456 G T 41 89 BRCA TCGA-D8-A1XT PRRC2B SNP Missense_Mutation 9 134360104 G A 39 70 BRCA TCGA-D8-A1XU FLG2 SNP Nonsense_Mutation 1 152329961 T A 62 56 BRCA TCGA-D8-A1XU SPTA1 SNP Silent 1 158590173 C T 28 49 BRCA TCGA-D8-A1XU MACF1 SNP Silent 1 39797714 G T 39 48 BRCA TCGA-D8-A1XU ACSL5 SNP Missense_Mutation 10 114185175 T C 49 93 BRCA TCGA-D8-A1XU ST8SIA6 SNP Missense_Mutation 10 17373535 A T 7 78 BRCA TCGA-D8-A1XU SLC2A13 SNP Silent 12 40223928 A G 15 40 BRCA TCGA-D8-A1XU AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-D8-A1XU GOLGA6L2 SNP Silent 15 23685207 T C 54 44 BRCA TCGA-D8-A1XU UNC13C SNP Missense_Mutation 15 54590048 G A 37 99 BRCA TCGA-D8-A1XU SKOR1 SNP Silent 15 68124619 G A 46 59 BRCA TCGA-D8-A1XU ARHGAP35 SNP Nonsense_Mutation 19 47424345 C T 29 65 BRCA TCGA-D8-A1XU SYT3 SNP Silent 19 51132704 C T 28 65 BRCA TCGA-D8-A1XU ZNF614 SNP Missense_Mutation 19 52521732 C T 30 58 BRCA TCGA-D8-A1XU ZNF749 SNP Nonsense_Mutation 19 57956839 G T 47 71 BRCA TCGA-D8-A1XU ADAM23 SNP Missense_Mutation 2 207431970 C T 29 99 BRCA TCGA-D8-A1XU C20orf112 SNP Missense_Mutation 20 31041156 C T 27 96 BRCA TCGA-D8-A1XU ZNF217 SNP Splice_Site 20 52188259 C G 18 78 BRCA TCGA-D8-A1XU TTC28 SNP Missense_Mutation 22 28494912 C T 19 86 BRCA TCGA-D8-A1XU RABL2B SNP Missense_Mutation 22 51215160 G T 41 88 BRCA TCGA-D8-A1XU PHC3 SNP Missense_Mutation 3 169847215 T C 52 50 BRCA TCGA-D8-A1XU TTC21A SNP Missense_Mutation 3 39174599 G A 45 57 BRCA TCGA-D8-A1XU HYAL2 SNP Missense_Mutation 3 50357256 C A 28 53 BRCA TCGA-D8-A1XU GALNTL6 SNP Silent 4 173150860 G A 45 60 BRCA TCGA-D8-A1XU ANKRD33B SNP Silent 5 10618519 C T 19 51 BRCA TCGA-D8-A1XU C5orf51 SNP Missense_Mutation 5 41911259 G A 33 52 BRCA TCGA-D8-A1XU ROS1 SNP Silent 6 117658378 C T 23 52 BRCA TCGA-D8-A1XU CCDC170 SNP Silent 6 151869573 A G 11 54 BRCA TCGA-D8-A1XV IGSF8 SNP Silent 1 160062103 T C 55 21 BRCA TCGA-D8-A1XV NCDN SNP Nonsense_Mutation 1 36030851 C T 23 53 BRCA TCGA-D8-A1XV CCDC17 SNP Missense_Mutation 1 46088465 G A 47 53 BRCA TCGA-D8-A1XV ODF2L SNP Silent 1 86841953 C A 30 53 BRCA TCGA-D8-A1XV DDX6 SNP Missense_Mutation 11 118626189 T A 49 91 BRCA TCGA-D8-A1XV MTMR6 SNP Missense_Mutation 13 25823617 C T 27 42 BRCA TCGA-D8-A1XV CLPX SNP Silent 15 65459107 G C 45 66 BRCA TCGA-D8-A1XV CYP1A2 SNP Missense_Mutation 15 75047325 G A 40 62 BRCA TCGA-D8-A1XV ZNF689 SNP Missense_Mutation 16 30616444 G A 41 90 BRCA TCGA-D8-A1XV PTRF SNP Missense_Mutation 17 40575012 G A 39 57 BRCA TCGA-D8-A1XV KIF18B SNP Missense_Mutation 17 43011380 T A 50 71 BRCA TCGA-D8-A1XV WSCD1 SNP Missense_Mutation 17 5984198 G A 37 68 BRCA TCGA-D8-A1XV PSMA8 SNP Silent 18 23713974 C T 19 46 BRCA TCGA-D8-A1XV INO80C SNP Missense_Mutation 18 33048579 G A 43 96 BRCA TCGA-D8-A1XV ATP13A1 SNP Missense_Mutation 19 19767522 G C 39 91 BRCA TCGA-D8-A1XV FFAR3 SNP Silent 19 35849945 C T 19 55 BRCA TCGA-D8-A1XV CEACAM16 SNP Missense_Mutation 19 45209123 G A 40 63 BRCA TCGA-D8-A1XV PLA2R1 SNP Missense_Mutation 2 160824180 C T 18 52 BRCA TCGA-D8-A1XV TNFRSF6B SNP Missense_Mutation 20 62328257 G A 39 53 BRCA TCGA-D8-A1XV CYP2D7P1 SNP Silent 22 42537569 G T 45 58 BRCA TCGA-D8-A1XV CD200R1L SNP Silent 3 112545931 A G 14 47 BRCA TCGA-D8-A1XV GOLGB1 SNP Silent 3 121416391 A G 8 55 BRCA TCGA-D8-A1XV REST SNP Nonsense_Mutation 4 57777582 G T 37 81 BRCA TCGA-D8-A1XV HPSE SNP Splice_Site 4 84231232 C A 28 90 BRCA TCGA-D8-A1XV PCDHGA3 SNP Missense_Mutation 5 140725686 G C 42 77 BRCA TCGA-D8-A1XV MGAT4B SNP Missense_Mutation 5 179226297 C T 23 81 BRCA TCGA-D8-A1XV HOMER1 SNP Missense_Mutation 5 78671930 G A 37 75 BRCA TCGA-D8-A1XV PHF3 SNP Missense_Mutation 6 64422754 G T 41 61 BRCA TCGA-D8-A1XV FBXO24 SNP Missense_Mutation 7 100187289 G A 39 51 BRCA TCGA-D8-A1XV FAM126A SNP Silent 7 22985376 C T 19 49 BRCA TCGA-D8-A1XW FNDC7 SNP Silent 1 109256138 T G 56 65 BRCA TCGA-D8-A1XW PADI1 SNP Missense_Mutation 1 17548919 T A 51 68 BRCA TCGA-D8-A1XW SOAT1 SNP Silent 1 179308636 C T 32 68 BRCA TCGA-D8-A1XW USH2A SNP Missense_Mutation 1 215847722 C A 25 96 BRCA TCGA-D8-A1XW TRIM67 SNP Nonsense_Mutation 1 231335936 C T 29 100 BRCA TCGA-D8-A1XW OR2T1 SNP Missense_Mutation 1 248570049 T A 59 68 BRCA TCGA-D8-A1XW OR2T29 SNP Missense_Mutation 1 248722668 G A 38 55 BRCA TCGA-D8-A1XW CCDC147 SNP Missense_Mutation 10 106160488 T A 51 42 BRCA TCGA-D8-A1XW C10orf12 SNP Missense_Mutation 10 98742390 G T 41 50 BRCA TCGA-D8-A1XW C10orf12 SNP Missense_Mutation 10 98742978 A G 5 55 BRCA TCGA-D8-A1XW SIK2 SNP Missense_Mutation 11 111594680 G A 41 69 BRCA TCGA-D8-A1XW OR8D1 SNP Missense_Mutation 11 124180486 C G 17 94 BRCA TCGA-D8-A1XW VPS26B SNP Missense_Mutation 11 134115368 G A 40 97 BRCA TCGA-D8-A1XW PTPRJ SNP Missense_Mutation 11 48149442 C T 17 57 BRCA TCGA-D8-A1XW CPT1A SNP Splice_site 11 68566686 G T 40 40 BRCA TCGA-D8-A1XW PAH SNP Missense_Mutation 12 103288660 G A 44 100 BRCA TCGA-D8-A1XW NUAK1 SNP Missense_Mutation 12 106461184 G A 40 76 BRCA TCGA-D8-A1XW FAM186A SNP Missense_Mutation 12 50748233 C A 29 61 BRCA TCGA-D8-A1XW MYO1A SNP Missense_Mutation 12 57441140 T C 54 62 BRCA TCGA-D8-A1XW TRHDE SNP Missense_Mutation 12 72956000 C T 17 77 BRCA TCGA-D8-A1XW BBS10 SNP Missense_Mutation 12 76741020 G T 39 57 BRCA TCGA-D8-A1XW KCTD12 DEL In_Frame_Del 13 77460152 CACCTGGCCCCC - 17 56 BRCA TCGA-D8-A1XW CDC42BPB SNP Missense_Mutation 14 103400160 T G 60 53 BRCA TCGA-D8-A1XW ZNF219 SNP Silent 14 21560535 G A 38 48 BRCA TCGA-D8-A1XW YLPM1 SNP Missense_Mutation 14 75248373 C A 26 79 BRCA TCGA-D8-A1XW DYX1C1 SNP Splice_Site 15 55727258 T C 53 68 BRCA TCGA-D8-A1XW ADAMTSL3 SNP Silent 15 84488589 C T 29 64 BRCA TCGA-D8-A1XW TPSB2 SNP Silent 16 1279650 G C 41 44 BRCA TCGA-D8-A1XW CDIPT SNP Silent 16 29872462 A G 2 56 BRCA TCGA-D8-A1XW ZNF263 SNP Missense_Mutation 16 3339518 C T 29 57 BRCA TCGA-D8-A1XW PMFBP1 SNP Silent 16 72166723 C T 20 50 BRCA TCGA-D8-A1XW ZFHX3 SNP Missense_Mutation 16 72830766 C G 32 100 BRCA TCGA-D8-A1XW BLMH SNP Nonsense_Mutation 17 28613877 A C 16 45 BRCA TCGA-D8-A1XW OR1A2 SNP Missense_Mutation 17 3101122 A T 8 51 BRCA TCGA-D8-A1XW FMNL1 SNP Missense_Mutation 17 43314962 G A 43 95 BRCA TCGA-D8-A1XW TP53 SNP Splice_site 17 7578554 A T 14 89 BRCA TCGA-D8-A1XW FBXO15 SNP Silent 18 71740756 G C 45 57 BRCA TCGA-D8-A1XW ZNF208 SNP Nonsense_Mutation 19 22171632 A C 13 58 BRCA TCGA-D8-A1XW TSHZ3 SNP Silent 19 31769775 G A 39 49 BRCA TCGA-D8-A1XW ZNF568 SNP Missense_Mutation 19 37427682 T A 56 59 BRCA TCGA-D8-A1XW ITPKC SNP Splice_Site 19 41231346 T G 57 78 BRCA TCGA-D8-A1XW RSPH6A SNP Missense_Mutation 19 46299287 A C 4 67 BRCA TCGA-D8-A1XW GP6 SNP Missense_Mutation 19 55526258 C G 24 46 BRCA TCGA-D8-A1XW CCDC74B SNP Missense_Mutation 2 130900856 G A 48 52 BRCA TCGA-D8-A1XW CASP8 SNP Missense_Mutation 2 202141566 A T 14 69 BRCA TCGA-D8-A1XW NBEAL1 SNP Missense_Mutation 2 203992635 T C 49 73 BRCA TCGA-D8-A1XW SH3BP4 SNP Missense_Mutation 2 235950855 C G 24 84 BRCA TCGA-D8-A1XW C2orf18 SNP Silent 2 26998432 G A 46 49 BRCA TCGA-D8-A1XW IMMT SNP Missense_Mutation 2 86400803 G C 48 53 BRCA TCGA-D8-A1XW PHF20 SNP Silent 20 34528959 G A 35 62 BRCA TCGA-D8-A1XW TPD52L2 SNP Missense_Mutation 20 62520553 A C 10 61 BRCA TCGA-D8-A1XW LTN1 SNP Missense_Mutation 21 30331787 A C 4 48 BRCA TCGA-D8-A1XW CECR2 SNP Missense_Mutation 22 18028881 C A 21 87 BRCA TCGA-D8-A1XW SLC7A4 SNP Missense_Mutation 22 21385708 C T 27 82 BRCA TCGA-D8-A1XW MYO18B SNP Silent 22 26164633 C T 21 58 BRCA TCGA-D8-A1XW EWSR1 SNP Splice_Site 22 29670255 A G 15 64 BRCA TCGA-D8-A1XW FAM83F SNP Missense_Mutation 22 40417461 C T 30 67 BRCA TCGA-D8-A1XW PACSIN2 SNP Missense_Mutation 22 43287157 C G 30 98 BRCA TCGA-D8-A1XW MORC4 DEL Frame_Shift_Del 23 106184859 AGCCCTGTATGAAGGAGTG - 3 60 BRCA TCGA-D8-A1XW IGSF1 SNP Missense_Mutation 23 130416483 T C 49 50 BRCA TCGA-D8-A1XW DNASE1L1 SNP Missense_Mutation 23 153631301 G C 41 55 BRCA TCGA-D8-A1XW ZBTB11 SNP Silent 3 101370349 C T 25 67 BRCA TCGA-D8-A1XW QTRTD1 SNP Silent 3 113785093 C G 32 61 BRCA TCGA-D8-A1XW AP2M1 DEL Frame_Shift_Del 3 183898426 CCTCCAGCATCAGGTAAGCT - 26 52 BRCA TCGA-D8-A1XW IL1RAP SNP Nonsense_Mutation 3 190321988 A T 5 60 BRCA TCGA-D8-A1XW FSTL5 SNP Missense_Mutation 4 162307095 T C 56 88 BRCA TCGA-D8-A1XW LNX1 SNP Silent 4 54374205 G A 40 47 BRCA TCGA-D8-A1XW HNRNPD DEL Frame_Shift_Del 4 83278494 TT - 56 91 BRCA TCGA-D8-A1XW PCDHB16 SNP Missense_Mutation 5 140564371 C T 30 61 BRCA TCGA-D8-A1XW SLC6A3 SNP Missense_Mutation 5 1406352 C G 28 75 BRCA TCGA-D8-A1XW DIAPH1 SNP Missense_Mutation 5 140953199 G C 41 93 BRCA TCGA-D8-A1XW FLT4 SNP Silent 5 180046347 C T 28 55 BRCA TCGA-D8-A1XW TRIM52 SNP Missense_Mutation 5 180687133 A C 3 43 BRCA TCGA-D8-A1XW GPR126 SNP Missense_Mutation 6 142726951 A G 2 72 BRCA TCGA-D8-A1XW HIST1H3I SNP Missense_Mutation 6 27840018 C G 26 96 BRCA TCGA-D8-A1XW AMPH SNP Silent 7 38502653 G T 41 46 BRCA TCGA-D8-A1XW SDK1 SNP Missense_Mutation 7 4285355 A G 10 85 BRCA TCGA-D8-A1XW ASL SNP Missense_Mutation 7 65552371 C T 25 59 BRCA TCGA-D8-A1XW ZFAT SNP Missense_Mutation 8 135622886 T C 58 77 BRCA TCGA-D8-A1XW TOP1MT SNP Missense_Mutation 8 144400190 T G 58 63 BRCA TCGA-D8-A1XW RAB11FIP1 SNP Missense_Mutation 8 37720609 G C 46 60 BRCA TCGA-D8-A1XW ARFGEF1 SNP Missense_Mutation 8 68139523 C T 21 100 BRCA TCGA-D8-A1XW PRDM14 DEL Frame_Shift_Del 8 70981582 AAGGTAAT - 5 35 BRCA TCGA-D8-A1XW RAD54B SNP Silent 8 95399325 T C 61 45 BRCA TCGA-D8-A1XW KCNT1 SNP Silent 9 138669336 C T 31 38 BRCA TCGA-D8-A1XW GLIS3 SNP Silent 9 3856175 A C 3 54 BRCA TCGA-D8-A1XY KIF26B SNP Silent 1 245582982 G T 38 18 BRCA TCGA-D8-A1XY C1orf173 SNP Missense_Mutation 1 75037178 C T 32 65 BRCA TCGA-D8-A1XY UEVLD SNP Missense_Mutation 11 18566328 T C 49 78 BRCA TCGA-D8-A1XY SERPING1 SNP Missense_Mutation 11 57367733 G A 46 66 BRCA TCGA-D8-A1XY ALG8 SNP Silent 11 77812019 C T 32 68 BRCA TCGA-D8-A1XY ZNF10 SNP Missense_Mutation 12 133733005 T G 50 51 BRCA TCGA-D8-A1XY DIP2B SNP Missense_Mutation 12 51112558 G T 41 96 BRCA TCGA-D8-A1XY ATP7B SNP Silent 13 52548306 C T 31 51 BRCA TCGA-D8-A1XY SPTB SNP Silent 14 65239968 C T 23 41 BRCA TCGA-D8-A1XY RIN3 SNP Missense_Mutation 14 93043720 C T 23 49 BRCA TCGA-D8-A1XY ADAMTS17 SNP Missense_Mutation 15 100672248 C T 30 99 BRCA TCGA-D8-A1XY MAPK6 SNP Missense_Mutation 15 52356190 G T 37 96 BRCA TCGA-D8-A1XY PRSS8 SNP Silent 16 31143759 G A 40 48 BRCA TCGA-D8-A1XY CDH3 SNP Missense_Mutation 16 68732208 G A 38 57 BRCA TCGA-D8-A1XY MAP2K4 SNP Missense_Mutation 17 12032481 C G 24 98 BRCA TCGA-D8-A1XY CNTROB SNP Nonsense_Mutation 17 7847523 C T 19 59 BRCA TCGA-D8-A1XY SHANK1 SNP Silent 19 51217199 G T 35 46 BRCA TCGA-D8-A1XY VSIG10L SNP Missense_Mutation 19 51837454 G A 39 59 BRCA TCGA-D8-A1XY KIR3DL3 SNP Missense_Mutation 19 55246750 G T 43 49 BRCA TCGA-D8-A1XY SCN9A SNP Silent 2 167055875 G A 45 62 BRCA TCGA-D8-A1XY FN1 SNP Nonsense_Mutation 2 216262532 C A 32 97 BRCA TCGA-D8-A1XY SPHKAP SNP Missense_Mutation 2 228881454 C A 30 53 BRCA TCGA-D8-A1XY USP34 SNP Silent 2 61416190 G C 37 51 BRCA TCGA-D8-A1XY ANTXR1 SNP Silent 2 69472437 G A 38 40 BRCA TCGA-D8-A1XY DIP2A SNP Missense_Mutation 21 47918525 C G 32 98 BRCA TCGA-D8-A1XY SLC35A2 SNP Missense_Mutation 23 48761929 G A 37 30 BRCA TCGA-D8-A1XY HRH1 SNP Missense_Mutation 3 11301339 A G 8 94 BRCA TCGA-D8-A1XY EPHB1 SNP Silent 3 134825375 G A 40 37 BRCA TCGA-D8-A1XY PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-D8-A1XY MCCC1 SNP Missense_Mutation 3 182810273 C T 27 75 BRCA TCGA-D8-A1XY ATP13A5 DEL Frame_Shift_Del 3 193068973 AT - 8 43 BRCA TCGA-D8-A1XY LRRC2 SNP Missense_Mutation 3 46560544 G A 43 72 BRCA TCGA-D8-A1XY UGT8 DEL Frame_Shift_Del 4 115586882 AT - 8 58 BRCA TCGA-D8-A1XY CAMK4 SNP Missense_Mutation 5 110679796 A C 1 83 BRCA TCGA-D8-A1XY DAB2 SNP Silent 5 39383203 G A 33 84 BRCA TCGA-D8-A1XY AP3B1 SNP Missense_Mutation 5 77511985 C T 27 100 BRCA TCGA-D8-A1XY GUSB SNP Missense_Mutation 7 65439687 C T 31 82 BRCA TCGA-D8-A1XY AKAP9 SNP Missense_Mutation 7 91570457 C T 26 81 BRCA TCGA-D8-A1XY PPP1R26 SNP Missense_Mutation 9 138378571 C T 23 75 BRCA TCGA-D8-A1XY EHMT1 SNP Silent 9 140672412 G A 39 26 BRCA TCGA-D8-A1XZ VAV3 DEL In_Frame_Del 1 108507315 CTC - 32 82 BRCA TCGA-D8-A1XZ HRNR SNP Missense_Mutation 1 152187437 A G 10 45 BRCA TCGA-D8-A1XZ CRB1 SNP Missense_Mutation 1 197326056 C A 17 77 BRCA TCGA-D8-A1XZ MARK1 SNP Missense_Mutation 1 220791767 C T 28 100 BRCA TCGA-D8-A1XZ RCAN3 SNP Nonsense_Mutation 1 24857756 C T 29 99 BRCA TCGA-D8-A1XZ OR2G6 SNP Missense_Mutation 1 248685642 C T 27 51 BRCA TCGA-D8-A1XZ SCMH1 SNP Silent 1 41512122 G C 45 54 BRCA TCGA-D8-A1XZ ST3GAL3 SNP Missense_Mutation 1 44363942 G C 33 66 BRCA TCGA-D8-A1XZ NPHP4 SNP Silent 1 5927909 C G 29 61 BRCA TCGA-D8-A1XZ ZEB1 SNP Missense_Mutation 10 31809597 A G 4 41 BRCA TCGA-D8-A1XZ TRPC6 SNP Missense_Mutation 11 101359736 C T 17 87 BRCA TCGA-D8-A1XZ PCSK7 SNP Silent 11 117097898 G A 38 41 BRCA TCGA-D8-A1XZ DCDC5 SNP Missense_Mutation 11 30926690 C A 26 79 BRCA TCGA-D8-A1XZ HIPK3 SNP Missense_Mutation 11 33368958 C G 29 99 BRCA TCGA-D8-A1XZ CCDC60 SNP Silent 12 119937943 G A 33 58 BRCA TCGA-D8-A1XZ CIT SNP Missense_Mutation 12 120287989 G T 45 62 BRCA TCGA-D8-A1XZ GRIN2B SNP Missense_Mutation 12 13768551 C A 22 100 BRCA TCGA-D8-A1XZ LUM SNP Missense_Mutation 12 91502039 C T 31 70 BRCA TCGA-D8-A1XZ TMCO3 SNP Missense_Mutation 13 114150035 C T 23 54 BRCA TCGA-D8-A1XZ HSPH1 SNP Missense_Mutation 13 31722195 G A 41 99 BRCA TCGA-D8-A1XZ DIAPH3 SNP Missense_Mutation 13 60348934 C T 30 96 BRCA TCGA-D8-A1XZ RTL1 SNP Missense_Mutation 14 101349520 G A 39 52 BRCA TCGA-D8-A1XZ ADCY4 SNP Missense_Mutation 14 24788604 G C 45 61 BRCA TCGA-D8-A1XZ PTPN21 SNP Silent 14 88962792 C T 27 30 BRCA TCGA-D8-A1XZ TRPM1 SNP Silent 15 31334372 G A 40 47 BRCA TCGA-D8-A1XZ ITGAX SNP Missense_Mutation 16 31391336 G A 38 45 BRCA TCGA-D8-A1XZ ZNF423 SNP Missense_Mutation 16 49669753 C T 18 60 BRCA TCGA-D8-A1XZ FAM83G SNP Missense_Mutation 17 18881643 G A 39 79 BRCA TCGA-D8-A1XZ TP53 SNP Nonsense_Mutation 17 7578431 G A 48 84 BRCA TCGA-D8-A1XZ TUBB6 SNP Missense_Mutation 18 12325960 G A 38 100 BRCA TCGA-D8-A1XZ MAPK4 SNP Missense_Mutation 18 48255548 C T 31 95 BRCA TCGA-D8-A1XZ CDH20 SNP Missense_Mutation 18 59221741 C T 23 100 BRCA TCGA-D8-A1XZ CC2D1A SNP Missense_Mutation 19 14031724 G C 41 82 BRCA TCGA-D8-A1XZ ONECUT3 SNP Missense_Mutation 19 1754710 G A 48 77 BRCA TCGA-D8-A1XZ SUGP1 SNP Missense_Mutation 19 19407828 C A 30 60 BRCA TCGA-D8-A1XZ THSD7B SNP Nonsense_Mutation 2 138208561 C T 19 75 BRCA TCGA-D8-A1XZ LRP1B SNP Missense_Mutation 2 141081533 A G 14 88 BRCA TCGA-D8-A1XZ TTN SNP Silent 2 179594238 G A 40 45 BRCA TCGA-D8-A1XZ RBM12 SNP Missense_Mutation 20 34242060 C T 21 53 BRCA TCGA-D8-A1XZ KCNB1 SNP Missense_Mutation 20 47990860 C T 19 100 BRCA TCGA-D8-A1XZ FAM217B SNP Missense_Mutation 20 58519040 G T 33 50 BRCA TCGA-D8-A1XZ SF3A1 SNP Silent 22 30733776 C T 27 26 BRCA TCGA-D8-A1XZ EP300 SNP Missense_Mutation 22 41523564 C T 25 97 BRCA TCGA-D8-A1XZ CXorf57 SNP Missense_Mutation 23 105855472 G A 47 18 BRCA TCGA-D8-A1XZ AVPR2 SNP Missense_Mutation 23 153171699 C T 27 49 BRCA TCGA-D8-A1XZ NHS SNP Silent 23 17744275 G C 45 60 BRCA TCGA-D8-A1XZ USP9X SNP Silent 23 41012240 C T 20 50 BRCA TCGA-D8-A1XZ ACRC SNP Missense_Mutation 23 70832732 C T 31 77 BRCA TCGA-D8-A1XZ TBX22 SNP Missense_Mutation 23 79278719 G T 45 90 BRCA TCGA-D8-A1XZ ADCY5 SNP Missense_Mutation 3 123038594 C T 28 100 BRCA TCGA-D8-A1XZ RHO SNP Missense_Mutation 3 129251571 G A 38 53 BRCA TCGA-D8-A1XZ KIAA1239 SNP Missense_Mutation 4 37448786 C T 27 62 BRCA TCGA-D8-A1XZ FAM13A SNP Missense_Mutation 4 89671660 G A 37 75 BRCA TCGA-D8-A1XZ CDH9 SNP Missense_Mutation 5 26881405 G A 40 94 BRCA TCGA-D8-A1XZ ZBTB2 SNP Missense_Mutation 6 151687962 A T 8 93 BRCA TCGA-D8-A1XZ HSPA1L SNP Missense_Mutation 6 31778018 C G 31 84 BRCA TCGA-D8-A1XZ LRRC1 SNP Silent 6 53784398 C T 20 57 BRCA TCGA-D8-A1XZ MTO1 SNP Silent 6 74171766 G T 46 62 BRCA TCGA-D8-A1XZ LCA5 SNP Nonsense_Mutation 6 80198927 G A 46 49 BRCA TCGA-D8-A1XZ AMPH SNP Missense_Mutation 7 38431512 G A 38 51 BRCA TCGA-D8-A1XZ SDC2 SNP Missense_Mutation 8 97620629 G A 37 63 BRCA TCGA-D8-A1XZ GOLM1 SNP Missense_Mutation 9 88694123 C T 23 92 BRCA TCGA-D8-A1Y0 UBE4B SNP Missense_Mutation 1 10163139 A G 2 78 BRCA TCGA-D8-A1Y0 MASP2 DEL In_Frame_Del 1 11097769 GTCTCGCAAAAGATGGAGAAGCTG - 36 55 BRCA TCGA-D8-A1Y0 MTOR SNP Missense_Mutation 1 11187116 C A 21 97 BRCA TCGA-D8-A1Y0 LRIG2 SNP Missense_Mutation 1 113616189 T A 55 70 BRCA TCGA-D8-A1Y0 CACNA1E SNP Silent 1 181685255 C A 32 58 BRCA TCGA-D8-A1Y0 HIVEP3 SNP Missense_Mutation 1 42049672 T C 54 78 BRCA TCGA-D8-A1Y0 MTF2 SNP Silent 1 93602437 C G 29 46 BRCA TCGA-D8-A1Y0 ADARB2 SNP Silent 10 1279721 T C 54 43 BRCA TCGA-D8-A1Y0 ARID5B SNP Missense_Mutation 10 63759999 A T 7 70 BRCA TCGA-D8-A1Y0 PCNXL3 SNP Missense_Mutation 11 65384797 G C 48 61 BRCA TCGA-D8-A1Y0 NDUFV1 SNP Missense_Mutation 11 67377893 G C 33 50 BRCA TCGA-D8-A1Y0 MAP6 SNP Missense_Mutation 11 75298409 C T 19 44 BRCA TCGA-D8-A1Y0 PRKRIR SNP Nonsense_Mutation 11 76062798 G A 39 53 BRCA TCGA-D8-A1Y0 SBNO1 SNP Missense_Mutation 12 123798175 A T 1 92 BRCA TCGA-D8-A1Y0 ADAMTS20 SNP Silent 12 43833862 G A 40 49 BRCA TCGA-D8-A1Y0 NOP2 SNP Silent 12 6666267 G C 47 51 BRCA TCGA-D8-A1Y0 HEATR5A SNP Missense_Mutation 14 31792818 T A 51 89 BRCA TCGA-D8-A1Y0 SOS2 SNP Missense_Mutation 14 50605424 T C 52 92 BRCA TCGA-D8-A1Y0 SNAPC1 SNP Missense_Mutation 14 62235358 C T 29 73 BRCA TCGA-D8-A1Y0 CDAN1 SNP Nonsense_Mutation 15 43025328 C T 21 99 BRCA TCGA-D8-A1Y0 NOMO2 SNP Missense_Mutation 16 18544464 G T 43 85 BRCA TCGA-D8-A1Y0 MYH8 SNP Missense_Mutation 17 10298721 A T 12 69 BRCA TCGA-D8-A1Y0 RHOT1 SNP Missense_Mutation 17 30536424 G C 33 64 BRCA TCGA-D8-A1Y0 RAD51C SNP Missense_Mutation 17 56801450 C A 18 52 BRCA TCGA-D8-A1Y0 FCHO1 SNP Missense_Mutation 19 17887068 C T 19 78 BRCA TCGA-D8-A1Y0 KXD1 SNP Missense_Mutation 19 18679394 A T 8 49 BRCA TCGA-D8-A1Y0 ZNF555 SNP Missense_Mutation 19 2852854 C G 28 58 BRCA TCGA-D8-A1Y0 YIF1B SNP Silent 19 38798137 G T 42 54 BRCA TCGA-D8-A1Y0 ATP1A3 SNP Silent 19 42492241 G A 40 51 BRCA TCGA-D8-A1Y0 NKPD1 SNP Silent 19 45662102 G A 41 56 BRCA TCGA-D8-A1Y0 PTGIR SNP Silent 19 47124648 C A 23 19 BRCA TCGA-D8-A1Y0 PLCL1 SNP Missense_Mutation 2 198950898 T A 50 79 BRCA TCGA-D8-A1Y0 OTOF SNP Silent 2 26739336 G A 41 48 BRCA TCGA-D8-A1Y0 GFPT1 SNP Missense_Mutation 2 69569326 C G 29 55 BRCA TCGA-D8-A1Y0 NINL SNP Missense_Mutation 20 25481635 C G 32 63 BRCA TCGA-D8-A1Y0 CEP250 SNP Missense_Mutation 20 34091216 G T 33 47 BRCA TCGA-D8-A1Y0 TAF4 SNP Missense_Mutation 20 60581738 G A 39 71 BRCA TCGA-D8-A1Y0 PSMA7 SNP Silent 20 60714888 C T 24 64 BRCA TCGA-D8-A1Y0 ABCG1 SNP Silent 21 43645822 G A 39 23 BRCA TCGA-D8-A1Y0 NUP210 SNP Missense_Mutation 3 13364839 C T 25 46 BRCA TCGA-D8-A1Y0 FAM43A SNP Missense_Mutation 3 194408538 G A 42 67 BRCA TCGA-D8-A1Y0 ZNF619 SNP Missense_Mutation 3 40528692 C T 26 72 BRCA TCGA-D8-A1Y0 ADH5 SNP Missense_Mutation 4 100003129 C T 26 51 BRCA TCGA-D8-A1Y0 ZNF518B SNP Missense_Mutation 4 10446040 G C 33 86 BRCA TCGA-D8-A1Y0 USP53 SNP Missense_Mutation 4 120213924 A T 3 77 BRCA TCGA-D8-A1Y0 SORBS2 SNP Missense_Mutation 4 186545132 T C 57 76 BRCA TCGA-D8-A1Y0 RBM47 DEL In_Frame_Del 4 40434705 GCGGCTGCGGCGGCTGCGGCC - 34 70 BRCA TCGA-D8-A1Y0 SPATA18 SNP Missense_Mutation 4 52951104 G T 36 44 BRCA TCGA-D8-A1Y0 SEC24A SNP Silent 5 133997101 C A 21 49 BRCA TCGA-D8-A1Y0 PCDHA9 SNP Missense_Mutation 5 140230345 G T 42 51 BRCA TCGA-D8-A1Y0 PCDHB11 SNP Missense_Mutation 5 140580879 G C 42 89 BRCA TCGA-D8-A1Y0 SLC1A3 SNP Nonsense_Mutation 5 36608580 C T 21 81 BRCA TCGA-D8-A1Y0 ARSK DEL Frame_Shift_Del 5 94922376 AGAAATTAAGAATATT - 3 54 BRCA TCGA-D8-A1Y0 ELL2 SNP Missense_Mutation 5 95242412 T C 51 76 BRCA TCGA-D8-A1Y0 C7orf63 SNP Nonsense_Mutation 7 89933315 G T 33 70 BRCA TCGA-D8-A1Y0 HHLA1 SNP Silent 8 133083697 A C 11 50 BRCA TCGA-D8-A1Y0 PLEC SNP Missense_Mutation 8 145006612 T C 54 74 BRCA TCGA-D8-A1Y0 KCNB2 SNP Silent 8 73848355 A G 6 47 BRCA TCGA-D8-A1Y0 TBC1D2 SNP Silent 9 101006299 G C 45 54 BRCA TCGA-D8-A1Y0 ZNF658 SNP Missense_Mutation 9 40774928 T G 55 56 BRCA TCGA-D8-A1Y1 TRMT13 SNP Missense_Mutation 1 100606429 G A 45 91 BRCA TCGA-D8-A1Y1 TDRD10 SNP Silent 1 154516982 C T 19 45 BRCA TCGA-D8-A1Y1 MEF2D SNP Splice_site 1 156437437 T C 58 62 BRCA TCGA-D8-A1Y1 FCRL5 SNP Missense_Mutation 1 157504569 G C 47 40 BRCA TCGA-D8-A1Y1 CASP9 SNP Silent 1 15831197 C T 23 24 BRCA TCGA-D8-A1Y1 CRP SNP Missense_Mutation 1 159683727 T C 50 18 BRCA TCGA-D8-A1Y1 ATP1A4 SNP Silent 1 160143454 G C 39 43 BRCA TCGA-D8-A1Y1 RGS16 SNP Missense_Mutation 1 182572462 G C 45 61 BRCA TCGA-D8-A1Y1 HMCN1 SNP Silent 1 186034377 A G 7 49 BRCA TCGA-D8-A1Y1 CFH SNP Silent 1 196659317 A G 7 42 BRCA TCGA-D8-A1Y1 AVPR1B SNP Missense_Mutation 1 206224826 C T 19 85 BRCA TCGA-D8-A1Y1 PLXNA2 SNP Missense_Mutation 1 208227774 T C 59 74 BRCA TCGA-D8-A1Y1 EIF4G3 SNP Missense_Mutation 1 21299568 G A 39 97 BRCA TCGA-D8-A1Y1 TMEM63A SNP Missense_Mutation 1 226041376 C T 27 100 BRCA TCGA-D8-A1Y1 GUK1 SNP Silent 1 228335369 G A 42 55 BRCA TCGA-D8-A1Y1 OBSCN SNP Missense_Mutation 1 228497221 G A 40 70 BRCA TCGA-D8-A1Y1 PCNXL2 SNP Missense_Mutation 1 233393833 G A 40 45 BRCA TCGA-D8-A1Y1 KCNK1 SNP Missense_Mutation 1 233802463 G A 40 69 BRCA TCGA-D8-A1Y1 AHCTF1 SNP Silent 1 247053342 T C 63 53 BRCA TCGA-D8-A1Y1 SRSF11 SNP Missense_Mutation 1 70701196 G A 33 97 BRCA TCGA-D8-A1Y1 C1orf173 SNP Missense_Mutation 1 75036916 G A 38 47 BRCA TCGA-D8-A1Y1 DPYD SNP Silent 1 98058912 C T 31 55 BRCA TCGA-D8-A1Y1 PNLIPRP1 SNP Silent 10 118351338 C T 27 44 BRCA TCGA-D8-A1Y1 OPTN SNP Silent 10 13169759 C T 17 46 BRCA TCGA-D8-A1Y1 MTG1 SNP Missense_Mutation 10 135233665 C A 22 53 BRCA TCGA-D8-A1Y1 SFMBT2 SNP Missense_Mutation 10 7218087 G A 40 85 BRCA TCGA-D8-A1Y1 MARCH5 SNP Missense_Mutation 10 94109244 C T 27 83 BRCA TCGA-D8-A1Y1 ZBTB16 SNP Silent 11 113935219 C T 26 77 BRCA TCGA-D8-A1Y1 GLB1L2 SNP Missense_Mutation 11 134244521 T C 50 86 BRCA TCGA-D8-A1Y1 ALX4 SNP Missense_Mutation 11 44289156 C T 31 99 BRCA TCGA-D8-A1Y1 KBTBD4 SNP Silent 11 47599060 C A 23 44 BRCA TCGA-D8-A1Y1 SERPING1 SNP Missense_Mutation 11 57373624 G A 39 49 BRCA TCGA-D8-A1Y1 FADS2 SNP Silent 11 61607877 C T 19 49 BRCA TCGA-D8-A1Y1 MARK2 SNP Missense_Mutation 11 63670145 G A 39 79 BRCA TCGA-D8-A1Y1 PLCB3 SNP Missense_Mutation 11 64032862 C T 27 54 BRCA TCGA-D8-A1Y1 DLG2 SNP Splice_site 11 83195172 G A 40 97 BRCA TCGA-D8-A1Y1 FAT3 SNP Silent 11 92088560 C T 19 46 BRCA TCGA-D8-A1Y1 SVOP SNP Silent 12 109311864 C T 19 51 BRCA TCGA-D8-A1Y1 WDR66 SNP Missense_Mutation 12 122413586 G A 33 70 BRCA TCGA-D8-A1Y1 TMEM132C SNP Missense_Mutation 12 128899747 C T 23 60 BRCA TCGA-D8-A1Y1 EP400 SNP Missense_Mutation 12 132474593 C T 27 85 BRCA TCGA-D8-A1Y1 ANKLE2 SNP Missense_Mutation 12 133324459 G A 39 56 BRCA TCGA-D8-A1Y1 GRIN2B SNP Silent 12 13724845 G A 40 50 BRCA TCGA-D8-A1Y1 KIAA0528 SNP Missense_Mutation 12 22677460 G A 37 71 BRCA TCGA-D8-A1Y1 ITFG2 SNP Silent 12 2929346 G A 45 50 BRCA TCGA-D8-A1Y1 KRT7 SNP Missense_Mutation 12 52631316 G A 38 86 BRCA TCGA-D8-A1Y1 SDR9C7 SNP Missense_Mutation 12 57323335 C T 19 73 BRCA TCGA-D8-A1Y1 GRIP1 SNP Missense_Mutation 12 66932939 G A 39 74 BRCA TCGA-D8-A1Y1 PSPC1 SNP Missense_Mutation 13 20315754 C T 30 100 BRCA TCGA-D8-A1Y1 ATP7B SNP Missense_Mutation 13 52539048 G A 39 79 BRCA TCGA-D8-A1Y1 DNAJC3 SNP Missense_Mutation 13 96443192 G A 39 64 BRCA TCGA-D8-A1Y1 IGHD DEL Silent 14 106307559 CT - 20 45 BRCA TCGA-D8-A1Y1 RPGRIP1 SNP Missense_Mutation 14 21789487 G A 38 74 BRCA TCGA-D8-A1Y1 PPP2R3C SNP Missense_Mutation 14 35568559 G T 35 84 BRCA TCGA-D8-A1Y1 CCDC88C SNP Silent 14 91780360 C T 23 16 BRCA TCGA-D8-A1Y1 OR4F6 SNP Missense_Mutation 15 102345983 C T 27 51 BRCA TCGA-D8-A1Y1 TRPM1 SNP Splice_site 15 31323186 G A 39 99 BRCA TCGA-D8-A1Y1 HERC1 SNP Missense_Mutation 15 63908694 C T 19 99 BRCA TCGA-D8-A1Y1 TXNDC11 DEL Frame_Shift_Del 16 11773171 CT - 24 58 BRCA TCGA-D8-A1Y1 TPSAB1 SNP Silent 16 1291621 C T 29 50 BRCA TCGA-D8-A1Y1 TPSD1 SNP Missense_Mutation 16 1307051 G A 40 56 BRCA TCGA-D8-A1Y1 MKL2 SNP Missense_Mutation 16 14354864 C T 23 70 BRCA TCGA-D8-A1Y1 HAGH SNP Silent 16 1869958 G A 40 46 BRCA TCGA-D8-A1Y1 ACSM2A SNP Splice_site 16 20487095 G A 39 52 BRCA TCGA-D8-A1Y1 PRR14 SNP Nonsense_Mutation 16 30664308 C T 27 49 BRCA TCGA-D8-A1Y1 C16orf5 SNP Silent 16 4562821 G A 37 45 BRCA TCGA-D8-A1Y1 TOX3 SNP Missense_Mutation 16 52484428 G A 39 75 BRCA TCGA-D8-A1Y1 MT1M SNP Silent 16 56667262 C T 27 54 BRCA TCGA-D8-A1Y1 CDH1 SNP Splice_Site 16 68856129 G T 36 95 BRCA TCGA-D8-A1Y1 ZFHX3 DEL Frame_Shift_Del 16 72830903 CT - 24 64 BRCA TCGA-D8-A1Y1 CHST5 SNP Missense_Mutation 16 75563057 G A 37 70 BRCA TCGA-D8-A1Y1 ZNF469 DEL In_Frame_Del 16 88501554 AGG - 3 47 BRCA TCGA-D8-A1Y1 MYH3 SNP Missense_Mutation 17 10544483 C T 23 100 BRCA TCGA-D8-A1Y1 PLD6 SNP Silent 17 17106258 G A 40 46 BRCA TCGA-D8-A1Y1 NOS2 SNP Missense_Mutation 17 26107923 C T 31 66 BRCA TCGA-D8-A1Y1 FLOT2 SNP Missense_Mutation 17 27216012 C T 19 86 BRCA TCGA-D8-A1Y1 MYO18A SNP Missense_Mutation 17 27420379 G A 38 59 BRCA TCGA-D8-A1Y1 TMIGD1 DEL Frame_Shift_Del 17 28645921 CA - 21 43 BRCA TCGA-D8-A1Y1 DNAJC7 SNP Missense_Mutation 17 40134299 C T 23 86 BRCA TCGA-D8-A1Y1 AOC3 SNP Missense_Mutation 17 41006560 C T 23 53 BRCA TCGA-D8-A1Y1 MEOX1 SNP Missense_Mutation 17 41738729 C T 19 35 BRCA TCGA-D8-A1Y1 UBTF SNP Missense_Mutation 17 42287046 A G 8 91 BRCA TCGA-D8-A1Y1 EPX SNP Missense_Mutation 17 56276490 C T 19 49 BRCA TCGA-D8-A1Y1 TANC2 SNP Missense_Mutation 17 61396410 C T 27 80 BRCA TCGA-D8-A1Y1 ACE SNP Silent 17 61557230 C T 19 55 BRCA TCGA-D8-A1Y1 ABCA10 SNP Nonsense_Mutation 17 67183897 C T 21 78 BRCA TCGA-D8-A1Y1 SLC35G6 SNP Splice_site 17 7385307 G A 42 57 BRCA TCGA-D8-A1Y1 KCNAB3 SNP Missense_Mutation 17 7828433 G T 43 69 BRCA TCGA-D8-A1Y1 LOXHD1 SNP Missense_Mutation 18 44139503 C T 19 100 BRCA TCGA-D8-A1Y1 ATP8B1 SNP Silent 18 55355712 A G 10 51 BRCA TCGA-D8-A1Y1 MC4R SNP Missense_Mutation 18 58039219 C T 29 97 BRCA TCGA-D8-A1Y1 LRRC30 SNP Missense_Mutation 18 7231524 A G 10 56 BRCA TCGA-D8-A1Y1 C19orf6 SNP Missense_Mutation 19 1014378 C T 19 90 BRCA TCGA-D8-A1Y1 ICAM3 SNP Missense_Mutation 19 10445930 G A 45 51 BRCA TCGA-D8-A1Y1 ICAM3 SNP Nonsense_Mutation 19 10449539 A T 14 42 BRCA TCGA-D8-A1Y1 C19orf35 SNP Silent 19 2280862 C T 19 32 BRCA TCGA-D8-A1Y1 KIRREL2 SNP Silent 19 36357343 A G 8 35 BRCA TCGA-D8-A1Y1 PAPL SNP Missense_Mutation 19 39591673 G A 37 97 BRCA TCGA-D8-A1Y1 CCDC97 SNP Missense_Mutation 19 41825700 G C 41 93 BRCA TCGA-D8-A1Y1 EML2 SNP Nonsense_Mutation 19 46130077 C T 21 56 BRCA TCGA-D8-A1Y1 EHD2 SNP Nonsense_Mutation 19 48229479 C T 27 64 BRCA TCGA-D8-A1Y1 HRC SNP Missense_Mutation 19 49656895 C T 30 64 BRCA TCGA-D8-A1Y1 MED25 SNP Missense_Mutation 19 50335233 C T 19 80 BRCA TCGA-D8-A1Y1 VRK3 SNP Missense_Mutation 19 50519394 C T 26 73 BRCA TCGA-D8-A1Y1 KLK1 INS Frame_Shift_Ins 19 51323226 - T 28 56 BRCA TCGA-D8-A1Y1 NLRP2 SNP Nonsense_Mutation 19 55494672 C T 17 51 BRCA TCGA-D8-A1Y1 SLC5A7 DEL In_Frame_Del 2 108614339 TCA - 58 91 BRCA TCGA-D8-A1Y1 KCNF1 SNP Silent 2 11053665 C T 31 38 BRCA TCGA-D8-A1Y1 CCDC74A SNP Missense_Mutation 2 132290278 G A 37 54 BRCA TCGA-D8-A1Y1 LCT SNP Missense_Mutation 2 136564955 C T 31 100 BRCA TCGA-D8-A1Y1 ZEB2 DEL In_Frame_Del 2 145147249 CTT - 24 85 BRCA TCGA-D8-A1Y1 PXDN SNP Silent 2 1653368 G A 38 47 BRCA TCGA-D8-A1Y1 TFPI SNP Missense_Mutation 2 188332651 C T 23 53 BRCA TCGA-D8-A1Y1 TNS1 SNP Missense_Mutation 2 218682600 G T 42 63 BRCA TCGA-D8-A1Y1 EIF4E2 SNP Missense_Mutation 2 233431669 C T 28 83 BRCA TCGA-D8-A1Y1 ZNF512 SNP Missense_Mutation 2 27838044 A G 14 61 BRCA TCGA-D8-A1Y1 BRE SNP Splice_Site 2 28464261 G A 40 98 BRCA TCGA-D8-A1Y1 JAG1 SNP Splice_Site 20 10644610 C T 19 97 BRCA TCGA-D8-A1Y1 C20orf112 SNP Missense_Mutation 20 31041163 G A 38 96 BRCA TCGA-D8-A1Y1 PCNT SNP Missense_Mutation 21 47786639 C T 27 52 BRCA TCGA-D8-A1Y1 AP1B1 SNP Missense_Mutation 22 29726657 C T 29 95 BRCA TCGA-D8-A1Y1 CPT1B SNP Silent 22 51015421 G A 46 57 BRCA TCGA-D8-A1Y1 TCEAL6 SNP Missense_Mutation 23 101396134 T G 54 64 BRCA TCGA-D8-A1Y1 TLR7 SNP Missense_Mutation 23 12906029 C T 19 99 BRCA TCGA-D8-A1Y1 L1CAM SNP Missense_Mutation 23 153133791 C T 23 74 BRCA TCGA-D8-A1Y1 RAB39B SNP Silent 23 154493388 G A 33 88 BRCA TCGA-D8-A1Y1 FAM47C SNP Silent 23 37026807 G A 38 23 BRCA TCGA-D8-A1Y1 NIT2 SNP Silent 3 100058788 C T 24 50 BRCA TCGA-D8-A1Y1 ZBTB20 SNP Missense_Mutation 3 114057923 C T 19 100 BRCA TCGA-D8-A1Y1 ABTB1 SNP Silent 3 127395142 C T 19 50 BRCA TCGA-D8-A1Y1 DNAJC13 SNP Silent 3 132153451 A G 8 49 BRCA TCGA-D8-A1Y1 HDAC11 SNP Silent 3 13546039 C A 24 46 BRCA TCGA-D8-A1Y1 GMPS SNP Missense_Mutation 3 155652811 G C 42 100 BRCA TCGA-D8-A1Y1 PIK3CA SNP Silent 3 178916823 C T 31 57 BRCA TCGA-D8-A1Y1 PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-D8-A1Y1 IL1RAP SNP Missense_Mutation 3 190373953 C T 27 45 BRCA TCGA-D8-A1Y1 XIRP1 SNP Missense_Mutation 3 39227618 C A 22 56 BRCA TCGA-D8-A1Y1 RAD54L2 SNP Missense_Mutation 3 51673633 G A 40 72 BRCA TCGA-D8-A1Y1 CCDC66 SNP Missense_Mutation 3 56650033 A G 14 52 BRCA TCGA-D8-A1Y1 CAV3 SNP Silent 3 8787229 G A 45 77 BRCA TCGA-D8-A1Y1 ANK2 SNP Missense_Mutation 4 114251533 G A 38 100 BRCA TCGA-D8-A1Y1 KIAA1109 SNP Nonsense_Mutation 4 123168476 C T 31 87 BRCA TCGA-D8-A1Y1 GRXCR1 SNP Missense_Mutation 4 42895323 C T 19 58 BRCA TCGA-D8-A1Y1 ZAR1 SNP Missense_Mutation 4 48496158 G A 38 84 BRCA TCGA-D8-A1Y1 LPHN3 SNP Missense_Mutation 4 62813942 C T 32 100 BRCA TCGA-D8-A1Y1 MAN2B2 SNP Silent 4 6578364 C T 27 47 BRCA TCGA-D8-A1Y1 UGT2A1 SNP Silent 4 70462045 G A 33 56 BRCA TCGA-D8-A1Y1 MRPS18C DEL In_Frame_Del 4 84377269 GAA - 41 57 BRCA TCGA-D8-A1Y1 DCP2 SNP Nonsense_Mutation 5 112321590 C T 29 97 BRCA TCGA-D8-A1Y1 YTHDC2 SNP Missense_Mutation 5 112926754 C T 31 74 BRCA TCGA-D8-A1Y1 HSD17B4 SNP Missense_Mutation 5 118835030 A G 9 60 BRCA TCGA-D8-A1Y1 PCDHA4 SNP Missense_Mutation 5 140188906 G A 44 58 BRCA TCGA-D8-A1Y1 PCDHGA4 SNP Missense_Mutation 5 140735488 G A 40 56 BRCA TCGA-D8-A1Y1 PCDHGA7 SNP Silent 5 140764797 C T 17 48 BRCA TCGA-D8-A1Y1 PCDHGA10 SNP Missense_Mutation 5 140793061 G A 40 56 BRCA TCGA-D8-A1Y1 RNF14 SNP Silent 5 141359789 G A 40 40 BRCA TCGA-D8-A1Y1 LSM11 SNP Missense_Mutation 5 157182096 C T 19 66 BRCA TCGA-D8-A1Y1 C1QTNF2 SNP Silent 5 159776463 G A 38 41 BRCA TCGA-D8-A1Y1 RARS SNP Missense_Mutation 5 167946113 G A 40 75 BRCA TCGA-D8-A1Y1 UBTD2 SNP Missense_Mutation 5 171638974 G A 44 81 BRCA TCGA-D8-A1Y1 OR2V1 INS Frame_Shift_Ins 5 180551593 - T 28 72 BRCA TCGA-D8-A1Y1 PDZD2 SNP Missense_Mutation 5 32090758 G A 37 86 BRCA TCGA-D8-A1Y1 TTC23L SNP Silent 5 34867123 G A 33 58 BRCA TCGA-D8-A1Y1 EGFLAM SNP Missense_Mutation 5 38438425 G A 39 85 BRCA TCGA-D8-A1Y1 BDP1 SNP Nonsense_Mutation 5 70858270 C T 31 52 BRCA TCGA-D8-A1Y1 AKD1 SNP Missense_Mutation 6 109906406 C G 32 53 BRCA TCGA-D8-A1Y1 CEP85L SNP Missense_Mutation 6 118886832 C T 19 79 BRCA TCGA-D8-A1Y1 TRIM38 SNP Silent 6 25983774 G A 35 62 BRCA TCGA-D8-A1Y1 MRPS18B SNP Silent 6 30587733 C T 32 64 BRCA TCGA-D8-A1Y1 RDBP SNP Silent 6 31922402 T C 54 39 BRCA TCGA-D8-A1Y1 RPP40 SNP Missense_Mutation 6 4996460 C T 31 47 BRCA TCGA-D8-A1Y1 SPACA1 SNP Missense_Mutation 6 88773880 T C 49 55 BRCA TCGA-D8-A1Y1 CNR1 SNP Silent 6 88854514 C T 23 9 BRCA TCGA-D8-A1Y1 TRIM56 SNP Missense_Mutation 7 100732127 G A 39 64 BRCA TCGA-D8-A1Y1 ARHGEF5 SNP Missense_Mutation 7 144068342 G A 39 56 BRCA TCGA-D8-A1Y1 PCLO DEL In_Frame_Del 7 82595175 TCT - 50 55 BRCA TCGA-D8-A1Y1 MCM7 SNP Silent 7 99697274 G A 38 78 BRCA TCGA-D8-A1Y1 RAD21 SNP Missense_Mutation 8 117866515 G C 34 100 BRCA TCGA-D8-A1Y1 TAF2 SNP Silent 8 120774729 G A 45 41 BRCA TCGA-D8-A1Y1 WDR67 SNP Missense_Mutation 8 124105925 A G 5 90 BRCA TCGA-D8-A1Y1 ZNF572 INS Frame_Shift_Ins 8 125987892 - A 33 51 BRCA TCGA-D8-A1Y1 NAPRT1 SNP Silent 8 144658676 G A 38 23 BRCA TCGA-D8-A1Y1 EPPK1 SNP Nonsense_Mutation 8 144941901 G A 46 59 BRCA TCGA-D8-A1Y1 TRIM35 SNP Missense_Mutation 8 27151640 C T 23 65 BRCA TCGA-D8-A1Y1 PPP2CB SNP Missense_Mutation 8 30648767 C T 19 86 BRCA TCGA-D8-A1Y1 SGK196 SNP Silent 8 42977594 G A 37 63 BRCA TCGA-D8-A1Y1 CSPP1 SNP Missense_Mutation 8 68089932 C A 22 55 BRCA TCGA-D8-A1Y1 OR13C4 SNP Missense_Mutation 9 107289169 C A 22 87 BRCA TCGA-D8-A1Y1 PRPF4 SNP Silent 9 116053923 C T 28 82 BRCA TCGA-D8-A1Y1 PAPPA SNP Missense_Mutation 9 118950410 C T 19 63 BRCA TCGA-D8-A1Y1 ADAMTS13 SNP Missense_Mutation 9 136307529 C T 27 63 BRCA TCGA-D8-A1Y1 GNA14 SNP Missense_Mutation 9 80040546 T A 60 92 BRCA TCGA-D8-A1Y2 OR10Z1 SNP Missense_Mutation 1 158576343 C G 32 53 BRCA TCGA-D8-A1Y2 SHISA4 SNP Missense_Mutation 1 201859604 G A 38 91 BRCA TCGA-D8-A1Y2 SPATA17 SNP Missense_Mutation 1 217955553 G A 38 87 BRCA TCGA-D8-A1Y2 GPR3 SNP Missense_Mutation 1 27721113 G A 45 100 BRCA TCGA-D8-A1Y2 C1orf173 SNP Missense_Mutation 1 75055486 G A 33 54 BRCA TCGA-D8-A1Y2 KIF20B INS Frame_Shift_Ins 10 91497663 - A 21 51 BRCA TCGA-D8-A1Y2 DYNC1H1 SNP Missense_Mutation 14 102449530 G A 40 100 BRCA TCGA-D8-A1Y2 MAP4K5 SNP Missense_Mutation 14 50915497 C T 29 81 BRCA TCGA-D8-A1Y2 ATXN2L SNP Silent 16 28847726 G T 38 64 BRCA TCGA-D8-A1Y2 RARA SNP Missense_Mutation 17 38510603 T C 62 76 BRCA TCGA-D8-A1Y2 TUBG1 SNP Missense_Mutation 17 40762203 G A 37 98 BRCA TCGA-D8-A1Y2 FAM69C SNP Missense_Mutation 18 72114301 C A 26 49 BRCA TCGA-D8-A1Y2 EHD2 SNP Silent 19 48239730 G C 37 42 BRCA TCGA-D8-A1Y2 KLK3 SNP Silent 19 51361806 C T 29 52 BRCA TCGA-D8-A1Y2 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-D8-A1Y2 ITPR1 SNP Missense_Mutation 3 4847896 A G 16 91 BRCA TCGA-D8-A1Y2 KDM3B SNP Missense_Mutation 5 137766020 G A 40 100 BRCA TCGA-D8-A1Y2 ARAP3 SNP Silent 5 141049557 G A 45 56 BRCA TCGA-D8-A1Y2 RTN4IP1 SNP Silent 6 107070756 C A 22 53 BRCA TCGA-D8-A1Y2 ACO1 SNP Missense_Mutation 9 32436286 G T 37 87 BRCA TCGA-D8-A1Y3 AMY1A SNP Missense_Mutation 1 104203222 T A 64 64 BRCA TCGA-D8-A1Y3 ILF2 SNP Missense_Mutation 1 153636538 G A 43 79 BRCA TCGA-D8-A1Y3 PLD5 SNP Missense_Mutation 1 242253225 G T 45 71 BRCA TCGA-D8-A1Y3 DPCD SNP Missense_Mutation 10 103360972 C T 27 65 BRCA TCGA-D8-A1Y3 CUBN SNP Silent 10 16945996 G A 48 48 BRCA TCGA-D8-A1Y3 APBB1IP SNP Missense_Mutation 10 26825123 T A 61 93 BRCA TCGA-D8-A1Y3 FBXO18 SNP Splice_site 10 5951018 G A 39 75 BRCA TCGA-D8-A1Y3 LIPF SNP Missense_Mutation 10 90427417 A G 16 75 BRCA TCGA-D8-A1Y3 LIPN SNP Missense_Mutation 10 90524285 G T 41 95 BRCA TCGA-D8-A1Y3 NPAT SNP Missense_Mutation 11 108059913 C T 31 61 BRCA TCGA-D8-A1Y3 OR56A4 SNP Silent 11 6024337 C T 24 36 BRCA TCGA-D8-A1Y3 NRXN2 SNP Silent 11 64416348 A G 16 46 BRCA TCGA-D8-A1Y3 SRRM4 SNP Missense_Mutation 12 119591417 C T 23 77 BRCA TCGA-D8-A1Y3 VPS33A SNP Missense_Mutation 12 122720362 G A 40 82 BRCA TCGA-D8-A1Y3 DUSP16 SNP Missense_Mutation 12 12640024 G A 35 99 BRCA TCGA-D8-A1Y3 CACNA1C SNP Missense_Mutation 12 2795355 G C 41 95 BRCA TCGA-D8-A1Y3 PTPRB SNP Silent 12 70974895 G A 39 21 BRCA TCGA-D8-A1Y3 SPRY2 SNP Missense_Mutation 13 80910967 G A 39 83 BRCA TCGA-D8-A1Y3 CKB SNP Silent 14 103988690 C T 27 48 BRCA TCGA-D8-A1Y3 KIAA1737 SNP Missense_Mutation 14 77580648 A C 6 59 BRCA TCGA-D8-A1Y3 THBS1 DEL In_Frame_Del 15 39874617 GAA - 45 66 BRCA TCGA-D8-A1Y3 TICRR SNP Missense_Mutation 15 90167690 A C 2 54 BRCA TCGA-D8-A1Y3 USP32 SNP Silent 17 58275761 G A 47 75 BRCA TCGA-D8-A1Y3 PPM1D SNP Missense_Mutation 17 58725291 G A 48 82 BRCA TCGA-D8-A1Y3 TP53 SNP Nonsense_Mutation 17 7578212 G A 37 66 BRCA TCGA-D8-A1Y3 ATP13A1 SNP Missense_Mutation 19 19766896 T C 51 70 BRCA TCGA-D8-A1Y3 ZNF90 SNP Missense_Mutation 19 20228629 A G 7 54 BRCA TCGA-D8-A1Y3 SIRT2 SNP Missense_Mutation 19 39369929 G A 39 58 BRCA TCGA-D8-A1Y3 ZNF414 SNP Missense_Mutation 19 8577364 C T 27 59 BRCA TCGA-D8-A1Y3 EIF5B SNP Silent 2 99988165 T A 53 50 BRCA TCGA-D8-A1Y3 MC3R SNP Silent 20 54824328 C T 19 65 BRCA TCGA-D8-A1Y3 TAF4 SNP Silent 20 60578311 G C 39 32 BRCA TCGA-D8-A1Y3 C2CD2 SNP Missense_Mutation 21 43338233 G A 40 41 BRCA TCGA-D8-A1Y3 SCN11A SNP Missense_Mutation 3 38892206 T C 56 55 BRCA TCGA-D8-A1Y3 ULK4 SNP Missense_Mutation 3 41938435 G A 37 59 BRCA TCGA-D8-A1Y3 SLC7A11 SNP Missense_Mutation 4 139144461 T G 64 71 BRCA TCGA-D8-A1Y3 DCHS2 SNP Missense_Mutation 4 155242117 T A 54 50 BRCA TCGA-D8-A1Y3 TRIM61 SNP Silent 4 165890903 T C 62 52 BRCA TCGA-D8-A1Y3 KLHL8 SNP Nonsense_Mutation 4 88106441 G A 45 86 BRCA TCGA-D8-A1Y3 GRIA1 SNP Missense_Mutation 5 153026664 C G 24 99 BRCA TCGA-D8-A1Y3 NADKD1 SNP Missense_Mutation 5 36195293 T C 50 62 BRCA TCGA-D8-A1Y3 CAP2 SNP Silent 6 17539526 G A 40 39 BRCA TCGA-D8-A1Y3 FAM8A1 SNP Missense_Mutation 6 17608448 A C 5 90 BRCA TCGA-D8-A1Y3 KIFC1 SNP Missense_Mutation 6 33372827 C T 22 76 BRCA TCGA-D8-A1Y3 MTCH1 SNP Missense_Mutation 6 36940433 A C 9 63 BRCA TCGA-D8-A1Y3 KCNK5 SNP Silent 6 39162069 G A 38 38 BRCA TCGA-D8-A1Y3 TREML1 SNP Missense_Mutation 6 41122014 G C 35 65 BRCA TCGA-D8-A1Y3 MUC12 SNP Missense_Mutation 7 100637521 C G 17 60 BRCA TCGA-D8-A1Y3 WRN SNP Missense_Mutation 8 30958371 C T 19 90 BRCA TCGA-D8-A1Y3 RAB14 SNP Silent 9 123943767 A G 7 48 BRCA TCGA-D8-A1Y3 DOCK8 SNP Missense_Mutation 9 420960 T A 60 60 BRCA TCGA-D8-A1Y3 ERMP1 SNP Missense_Mutation 9 5830922 C G 20 50 BRCA TCGA-D8-A1Y3 AGTPBP1 SNP Missense_Mutation 9 88204545 G A 37 75 BRCA TCGA-D8-A27E CDK10 SNP Missense_Mutation 16 89762012 C A 23 92 BRCA TCGA-D8-A27E MYO5B SNP Missense_Mutation 18 47480795 C A 30 97 BRCA TCGA-D8-A27E CEACAM19 SNP Missense_Mutation 19 45175930 C G 30 70 BRCA TCGA-D8-A27E ZNF324 SNP Missense_Mutation 19 58982851 A G 6 72 BRCA TCGA-D8-A27E MZF1 INS In_Frame_Ins 19 59073812 - TGAGGCGCTGGC 56 61 BRCA TCGA-D8-A27E PCED1A SNP Missense_Mutation 20 2820525 G A 39 59 BRCA TCGA-D8-A27E C21orf56 SNP Missense_Mutation 21 47602541 C T 23 56 BRCA TCGA-D8-A27E COL6A6 SNP Missense_Mutation 3 130383928 G A 37 42 BRCA TCGA-D8-A27E OTUD4 SNP Missense_Mutation 4 146058902 C T 26 62 BRCA TCGA-D8-A27E MAPK14 SNP Missense_Mutation 6 36041850 G A 48 87 BRCA TCGA-D8-A27E ASZ1 SNP Missense_Mutation 7 117022190 G C 48 69 BRCA TCGA-D8-A27E GLI3 DEL Frame_Shift_Del 7 42018291 CAGCCACCTGCACACG - 21 46 BRCA TCGA-D8-A27F HSD3B1 SNP Missense_Mutation 1 120054136 C A 17 54 BRCA TCGA-D8-A27F FLG2 SNP Missense_Mutation 1 152327278 C T 20 62 BRCA TCGA-D8-A27F PKLR SNP Missense_Mutation 1 155263003 A C 6 56 BRCA TCGA-D8-A27F HMCN1 SNP Missense_Mutation 1 185951458 G T 46 56 BRCA TCGA-D8-A27F CSMD2 SNP Missense_Mutation 1 33988932 T C 50 67 BRCA TCGA-D8-A27F PIK3CD SNP Missense_Mutation 1 9777639 C G 31 31 BRCA TCGA-D8-A27F MKI67 DEL In_Frame_Del 10 129904060 ACTGGTAGGACCTCTTCTTTCACACCT - 10 44 BRCA TCGA-D8-A27F WDFY4 SNP Missense_Mutation 10 50025362 G A 40 55 BRCA TCGA-D8-A27F CD44 SNP Silent 11 35226171 G C 37 49 BRCA TCGA-D8-A27F OR5W2 SNP Missense_Mutation 11 55681285 C T 17 60 BRCA TCGA-D8-A27F SRRM4 DEL In_Frame_Del 12 119588983 CCCCCAGGTACA - 30 70 BRCA TCGA-D8-A27F MYF6 SNP Missense_Mutation 12 81101569 C A 21 77 BRCA TCGA-D8-A27F SALL2 SNP Missense_Mutation 14 22005013 C G 30 78 BRCA TCGA-D8-A27F L3HYPDH SNP Silent 14 59950711 C T 25 57 BRCA TCGA-D8-A27F STARD9 SNP Silent 15 42977022 A C 6 49 BRCA TCGA-D8-A27F ITGA11 SNP Silent 15 68612682 T A 51 39 BRCA TCGA-D8-A27F BLM DEL Frame_Shift_Del 15 91354482 GGAAGAAGTGCCGCTGAGGAGCTCGACG - 39 49 BRCA TCGA-D8-A27F SLC9A5 SNP Splice_Site 16 67283105 G T 44 89 BRCA TCGA-D8-A27F C16orf85 DEL Frame_Shift_Del 16 88620346 CGCAGTGCAGAGCTGGGACGGACGCC - 19 42 BRCA TCGA-D8-A27F COL1A1 DEL In_Frame_Del 17 48265251 GACCCTGGAGGCCAGAGAAGCCACGGT - 41 96 BRCA TCGA-D8-A27F APPBP2 SNP Missense_Mutation 17 58525152 A T 4 60 BRCA TCGA-D8-A27F ZNF407 SNP Silent 18 72775227 C G 29 51 BRCA TCGA-D8-A27F NFIX SNP Silent 19 13186433 C G 22 54 BRCA TCGA-D8-A27F PLIN4 SNP Nonsense_Mutation 19 4513410 G A 48 69 BRCA TCGA-D8-A27F SIGLEC5 SNP Missense_Mutation 19 52115496 C G 32 46 BRCA TCGA-D8-A27F IL11 SNP Missense_Mutation 19 55880300 C G 27 51 BRCA TCGA-D8-A27F OR2Z1 SNP Missense_Mutation 19 8842092 A T 10 49 BRCA TCGA-D8-A27F EPB41L5 SNP Missense_Mutation 2 120799675 G C 34 97 BRCA TCGA-D8-A27F PHOSPHO2 SNP Missense_Mutation 2 170558059 A G 12 55 BRCA TCGA-D8-A27F ITSN2 SNP Missense_Mutation 2 24494689 C G 28 52 BRCA TCGA-D8-A27F KCNG1 SNP Silent 20 49626537 G A 40 60 BRCA TCGA-D8-A27F TFAP2C SNP Missense_Mutation 20 55206502 G T 42 62 BRCA TCGA-D8-A27F TSPEAR SNP Silent 21 45947265 G C 33 67 BRCA TCGA-D8-A27F HUWE1 SNP Missense_Mutation 23 53581746 C T 30 65 BRCA TCGA-D8-A27F ZNF80 SNP Missense_Mutation 3 113955515 C T 28 46 BRCA TCGA-D8-A27F ADPRH SNP Missense_Mutation 3 119301156 A T 10 64 BRCA TCGA-D8-A27F ADCY5 DEL Frame_Shift_Del 3 123166299 GCGA - 42 100 BRCA TCGA-D8-A27F HPS3 SNP Missense_Mutation 3 148880113 T A 64 77 BRCA TCGA-D8-A27F IGSF10 SNP Silent 3 151162894 T A 55 45 BRCA TCGA-D8-A27F CCNL1 DEL In_Frame_Del 3 156868125 AAATCGAAC - 9 63 BRCA TCGA-D8-A27F ZCWPW2 SNP Missense_Mutation 3 28557108 C A 17 51 BRCA TCGA-D8-A27F TCTA SNP Silent 3 49450057 G A 44 57 BRCA TCGA-D8-A27F BAP1 DEL Frame_Shift_Del 3 52436639 TAAAGGTGCAGATGAACTCATCGTAG - 49 80 BRCA TCGA-D8-A27F GYPB SNP Nonsense_Mutation 4 144922352 G T 45 47 BRCA TCGA-D8-A27F ANKH SNP Silent 5 14871377 C T 25 59 BRCA TCGA-D8-A27F SLC34A1 SNP Silent 5 176813238 C G 21 55 BRCA TCGA-D8-A27F SEPP1 SNP Silent 5 42800932 G C 40 73 BRCA TCGA-D8-A27F OR2J2 SNP Missense_Mutation 6 29141639 C A 18 61 BRCA TCGA-D8-A27F BAG6 SNP Missense_Mutation 6 31611965 T C 55 72 BRCA TCGA-D8-A27F C6orf89 SNP Missense_Mutation 6 36884276 C G 29 50 BRCA TCGA-D8-A27F APOBEC2 SNP Missense_Mutation 6 41029494 G A 48 48 BRCA TCGA-D8-A27F DSP DEL Frame_Shift_Del 6 7583101 CTCAATATTCC - 20 63 BRCA TCGA-D8-A27F RELN SNP Missense_Mutation 7 103183246 G C 48 75 BRCA TCGA-D8-A27F EGFR SNP Silent 7 55268034 C A 26 62 BRCA TCGA-D8-A27F CSMD3 SNP Missense_Mutation 8 114326893 A G 16 91 BRCA TCGA-D8-A27F ANK1 SNP Missense_Mutation 8 41575713 T C 57 92 BRCA TCGA-D8-A27F UBXN2B SNP Missense_Mutation 8 59352284 G C 33 63 BRCA TCGA-D8-A27F MYBL1 SNP Nonsense_Mutation 8 67488508 C A 29 82 BRCA TCGA-D8-A27F GDAP1 SNP Missense_Mutation 8 75276444 A G 2 75 BRCA TCGA-D8-A27F ZFHX4 SNP Missense_Mutation 8 77764960 G A 43 55 BRCA TCGA-D8-A27F RAB14 SNP Missense_Mutation 9 123943823 C G 29 100 BRCA TCGA-D8-A27F CARD9 SNP Missense_Mutation 9 139265150 C T 29 78 BRCA TCGA-D8-A27H GJA5 SNP Missense_Mutation 1 147230977 C G 31 56 BRCA TCGA-D8-A27H FLG SNP Missense_Mutation 1 152282807 G A 45 38 BRCA TCGA-D8-A27H RRNAD1 SNP Missense_Mutation 1 156701823 C T 29 66 BRCA TCGA-D8-A27H MRPL24 SNP Missense_Mutation 1 156707244 C G 21 100 BRCA TCGA-D8-A27H OR10R2 SNP Missense_Mutation 1 158450097 G T 46 63 BRCA TCGA-D8-A27H ATP1A4 SNP Missense_Mutation 1 160129216 G C 45 80 BRCA TCGA-D8-A27H FBXO42 SNP Missense_Mutation 1 16577968 C G 17 66 BRCA TCGA-D8-A27H TNR SNP Missense_Mutation 1 175375432 C T 23 99 BRCA TCGA-D8-A27H CACNA1E SNP Missense_Mutation 1 181765933 C A 30 81 BRCA TCGA-D8-A27H ATP2B4 SNP Missense_Mutation 1 203683364 G A 45 100 BRCA TCGA-D8-A27H MAPKAPK2 SNP Silent 1 206904486 G A 48 53 BRCA TCGA-D8-A27H SYF2 SNP Missense_Mutation 1 25554645 T G 62 88 BRCA TCGA-D8-A27H WRAP73 SNP Missense_Mutation 1 3550035 C G 28 50 BRCA TCGA-D8-A27H CSF3R SNP Missense_Mutation 1 36941196 A T 12 77 BRCA TCGA-D8-A27H DPH2 SNP Missense_Mutation 1 44437957 G T 47 25 BRCA TCGA-D8-A27H SLC35D1 SNP Silent 1 67486085 A C 7 58 BRCA TCGA-D8-A27H PDCD4 SNP Missense_Mutation 10 112650367 G A 40 96 BRCA TCGA-D8-A27H RNF214 SNP Missense_Mutation 11 117110556 C G 29 72 BRCA TCGA-D8-A27H ANO9 SNP Missense_Mutation 11 418935 G T 41 60 BRCA TCGA-D8-A27H CCDC83 SNP Missense_Mutation 11 85606377 A C 4 52 BRCA TCGA-D8-A27H UTP20 SNP Silent 12 101693508 G A 36 51 BRCA TCGA-D8-A27H AEBP2 SNP Missense_Mutation 12 19653099 C G 24 95 BRCA TCGA-D8-A27H BAZ2A DNP Silent 12 56995411 GC AA 46 54 BRCA TCGA-D8-A27H PPP1R12A SNP Missense_Mutation 12 80226269 C A 18 87 BRCA TCGA-D8-A27H FRMD6 SNP Missense_Mutation 14 52187001 A C 6 81 BRCA TCGA-D8-A27H THBS1 SNP Silent 15 39886350 C G 23 47 BRCA TCGA-D8-A27H ZWILCH SNP Missense_Mutation 15 66819708 G C 35 61 BRCA TCGA-D8-A27H MMP25 SNP Missense_Mutation 16 3100510 C G 20 58 BRCA TCGA-D8-A27H CREBBP SNP Missense_Mutation 16 3779066 C G 32 60 BRCA TCGA-D8-A27H C16orf78 SNP Missense_Mutation 16 49412426 C G 24 46 BRCA TCGA-D8-A27H MYH8 SNP Missense_Mutation 17 10318835 A G 4 89 BRCA TCGA-D8-A27H MYH1 SNP Missense_Mutation 17 10398288 A T 7 92 BRCA TCGA-D8-A27H CDRT1 SNP Missense_Mutation 17 15516055 C G 28 44 BRCA TCGA-D8-A27H PLD2 SNP Missense_Mutation 17 4713241 G C 34 84 BRCA TCGA-D8-A27H SMG8 SNP Missense_Mutation 17 57288711 G C 41 52 BRCA TCGA-D8-A27H ACE SNP Missense_Mutation 17 61568690 G C 41 70 BRCA TCGA-D8-A27H CD300A DEL Frame_Shift_Del 17 72469794 CAGATTTT - 17 41 BRCA TCGA-D8-A27H CD300LB SNP Silent 17 72518949 G T 41 51 BRCA TCGA-D8-A27H TP53 DEL Frame_Shift_Del 17 7579360 GAAAC - 41 61 BRCA TCGA-D8-A27H TMEM235 SNP Silent 17 76235908 C G 24 40 BRCA TCGA-D8-A27H ALOX15B SNP Missense_Mutation 17 7945743 A T 10 57 BRCA TCGA-D8-A27H NPLOC4 SNP Missense_Mutation 17 79536048 C G 32 69 BRCA TCGA-D8-A27H METRNL SNP Silent 17 81043180 G C 39 40 BRCA TCGA-D8-A27H MEP1B SNP Silent 18 29775426 A G 8 39 BRCA TCGA-D8-A27H ASXL3 SNP Missense_Mutation 18 31318818 A C 2 47 BRCA TCGA-D8-A27H SERPINB13 SNP Missense_Mutation 18 61264417 C G 17 54 BRCA TCGA-D8-A27H ZNF440 DEL Frame_Shift_Del 19 11942231 TGGAGAAACT - 59 53 BRCA TCGA-D8-A27H OR10H3 SNP Missense_Mutation 19 15852362 C T 19 52 BRCA TCGA-D8-A27H ZNF302 SNP Silent 19 35174103 T C 51 51 BRCA TCGA-D8-A27H FCGBP SNP Missense_Mutation 19 40376817 G A 43 51 BRCA TCGA-D8-A27H CEACAM16 SNP Missense_Mutation 19 45206762 G A 40 54 BRCA TCGA-D8-A27H ZNF816 SNP Missense_Mutation 19 53453742 A T 2 54 BRCA TCGA-D8-A27H ZNF525 SNP Missense_Mutation 19 53884173 C G 17 58 BRCA TCGA-D8-A27H ROCK2 SNP Missense_Mutation 2 11354992 C A 30 95 BRCA TCGA-D8-A27H WDR33 SNP Missense_Mutation 2 128471382 C T 23 91 BRCA TCGA-D8-A27H TUBA3E SNP Silent 2 130949653 C T 21 87 BRCA TCGA-D8-A27H NCKAP5 SNP Missense_Mutation 2 133540494 A G 10 85 BRCA TCGA-D8-A27H NEB SNP Silent 2 152543948 G A 47 81 BRCA TCGA-D8-A27H NBAS SNP Missense_Mutation 2 15326973 T C 57 61 BRCA TCGA-D8-A27H HOXD13 SNP Missense_Mutation 2 176959403 A C 2 91 BRCA TCGA-D8-A27H TTN SNP Missense_Mutation 2 179445095 C G 32 61 BRCA TCGA-D8-A27H ITGAV SNP Silent 2 187455104 C G 22 50 BRCA TCGA-D8-A27H FAM124B SNP Missense_Mutation 2 225266346 C G 23 98 BRCA TCGA-D8-A27H GPR55 SNP Silent 2 231774802 G A 45 57 BRCA TCGA-D8-A27H HJURP SNP Missense_Mutation 2 234758445 G C 41 49 BRCA TCGA-D8-A27H CAPN14 SNP Missense_Mutation 2 31412173 C T 19 39 BRCA TCGA-D8-A27H LHCGR SNP Silent 2 48936098 C A 26 53 BRCA TCGA-D8-A27H MYH7B SNP Missense_Mutation 20 33587427 G A 41 97 BRCA TCGA-D8-A27H PHF20 SNP Missense_Mutation 20 34451203 A C 11 80 BRCA TCGA-D8-A27H TOP1 SNP Missense_Mutation 20 39750739 G C 33 51 BRCA TCGA-D8-A27H NCOA3 SNP Missense_Mutation 20 46268762 C G 30 72 BRCA TCGA-D8-A27H CSE1L SNP Missense_Mutation 20 47682930 G C 33 100 BRCA TCGA-D8-A27H CLDN14 SNP Silent 21 37833619 G A 45 61 BRCA TCGA-D8-A27H MTMR3 SNP Missense_Mutation 22 30421701 G C 36 93 BRCA TCGA-D8-A27H CAPN6 SNP Silent 23 110494202 C G 29 53 BRCA TCGA-D8-A27H ZNF75D SNP Missense_Mutation 23 134421701 C T 31 51 BRCA TCGA-D8-A27H FMR1 SNP Missense_Mutation 23 147027089 C G 19 80 BRCA TCGA-D8-A27H CXorf23 DEL Frame_Shift_Del 23 19947961 GTGAACCGTAAAC - 36 66 BRCA TCGA-D8-A27H ZXDC SNP Missense_Mutation 3 126191121 C G 20 70 BRCA TCGA-D8-A27H KIAA1257 SNP Missense_Mutation 3 128707723 T C 61 61 BRCA TCGA-D8-A27H KY SNP Missense_Mutation 3 134327635 C G 30 68 BRCA TCGA-D8-A27H XRN1 SNP Missense_Mutation 3 142137414 A T 5 77 BRCA TCGA-D8-A27H SLITRK3 SNP Missense_Mutation 3 164908611 G A 35 71 BRCA TCGA-D8-A27H KCNMB3 SNP Silent 3 178968569 G A 33 59 BRCA TCGA-D8-A27H MFI2 SNP Missense_Mutation 3 196735702 A G 13 65 BRCA TCGA-D8-A27H ZNF445 SNP Missense_Mutation 3 44488277 G T 34 51 BRCA TCGA-D8-A27H TRPC3 SNP Missense_Mutation 4 122825607 A G 6 93 BRCA TCGA-D8-A27H C4orf29 SNP Missense_Mutation 4 128938562 G C 41 100 BRCA TCGA-D8-A27H ODZ3 SNP Nonsense_Mutation 4 183603098 G T 39 100 BRCA TCGA-D8-A27H ACSL1 DEL Frame_Shift_Del 4 185687030 TGACATCCACCTCACC - 59 48 BRCA TCGA-D8-A27H GBA3 SNP Silent 4 22748975 A G 8 54 BRCA TCGA-D8-A27H KIAA1239 SNP Missense_Mutation 4 37445491 A T 3 53 BRCA TCGA-D8-A27H SCARB2 SNP Missense_Mutation 4 77100814 G C 37 51 BRCA TCGA-D8-A27H FCHSD1 SNP Missense_Mutation 5 141029054 C A 26 59 BRCA TCGA-D8-A27H FAM153A DEL Frame_Shift_Del 5 177164037 CTTTACCGTGT - 20 44 BRCA TCGA-D8-A27H SKP2 SNP Missense_Mutation 5 36177372 G C 45 69 BRCA TCGA-D8-A27H KIAA0947 SNP Missense_Mutation 5 5444434 T C 55 73 BRCA TCGA-D8-A27H KIAA0947 SNP Missense_Mutation 5 5464629 C T 26 93 BRCA TCGA-D8-A27H RNF146 SNP Missense_Mutation 6 127608175 A C 13 57 BRCA TCGA-D8-A27H SYNE1 SNP Missense_Mutation 6 152686119 C G 32 58 BRCA TCGA-D8-A27H ZSCAN23 SNP Missense_Mutation 6 28402746 C G 32 49 BRCA TCGA-D8-A27H PFDN6 SNP Missense_Mutation 6 33257979 G C 33 88 BRCA TCGA-D8-A27H ACTL6B SNP Missense_Mutation 7 100244378 C A 27 93 BRCA TCGA-D8-A27H RELN SNP Missense_Mutation 7 103183194 C G 30 99 BRCA TCGA-D8-A27H UBN2 SNP Missense_Mutation 7 138968722 C T 19 74 BRCA TCGA-D8-A27H DPP6 SNP Silent 7 154561218 C T 29 50 BRCA TCGA-D8-A27H AMPH SNP Missense_Mutation 7 38424487 G A 34 71 BRCA TCGA-D8-A27H CYP7A1 SNP Splice_site 8 59407066 T G 53 53 BRCA TCGA-D8-A27H FABP12 SNP Missense_Mutation 8 82441695 G A 40 85 BRCA TCGA-D8-A27H RGS3 SNP Missense_Mutation 9 116226093 C G 30 71 BRCA TCGA-D8-A27H GLDC SNP Missense_Mutation 9 6592147 G C 33 93 BRCA TCGA-D8-A27H APBA1 SNP Missense_Mutation 9 72131068 G C 45 68 BRCA TCGA-D8-A27H TMEM2 SNP Missense_Mutation 9 74345042 T G 50 89 BRCA TCGA-D8-A27I POGZ SNP Missense_Mutation 1 151379720 T C 52 68 BRCA TCGA-D8-A27I RYR2 SNP Missense_Mutation 1 237777819 A T 3 50 BRCA TCGA-D8-A27I OR2T33 SNP Missense_Mutation 1 248436177 T C 64 60 BRCA TCGA-D8-A27I USP47 SNP Missense_Mutation 11 11964387 A G 12 88 BRCA TCGA-D8-A27I SLC22A12 SNP Silent 11 64361228 G T 46 51 BRCA TCGA-D8-A27I ABCC9 SNP Missense_Mutation 12 22068664 G T 42 99 BRCA TCGA-D8-A27I SCN8A SNP Missense_Mutation 12 52162755 G A 40 100 BRCA TCGA-D8-A27I TUBA3C SNP Missense_Mutation 13 19752451 C T 27 70 BRCA TCGA-D8-A27I FAM189A1 SNP Missense_Mutation 15 29443953 G C 41 82 BRCA TCGA-D8-A27I SCNN1G SNP Missense_Mutation 16 23200787 G A 37 81 BRCA TCGA-D8-A27I TTLL6 SNP Missense_Mutation 17 46846360 C G 32 55 BRCA TCGA-D8-A27I ANKRD40 SNP Silent 17 48777007 C A 22 57 BRCA TCGA-D8-A27I PLVAP SNP Missense_Mutation 19 17476703 G A 40 56 BRCA TCGA-D8-A27I TMPRSS15 SNP Missense_Mutation 21 19770211 C G 32 54 BRCA TCGA-D8-A27I LGALS2 SNP Nonsense_Mutation 22 37966365 C A 31 49 BRCA TCGA-D8-A27I GTSE1 SNP Missense_Mutation 22 46719150 C T 29 68 BRCA TCGA-D8-A27I VCX3B SNP Missense_Mutation 23 8434101 G A 44 53 BRCA TCGA-D8-A27I CD200R1 SNP Missense_Mutation 3 112648154 C A 29 57 BRCA TCGA-D8-A27I MBNL1 SNP Missense_Mutation 3 152165442 A G 1 92 BRCA TCGA-D8-A27I KLB SNP Missense_Mutation 4 39439521 G A 37 47 BRCA TCGA-D8-A27I MEGF10 SNP Silent 5 126792857 T C 49 50 BRCA TCGA-D8-A27I PCDHGB1 SNP Missense_Mutation 5 140730020 C T 27 54 BRCA TCGA-D8-A27I GABRA1 SNP Silent 5 161324182 C T 17 52 BRCA TCGA-D8-A27I ADAMTS12 SNP Missense_Mutation 5 33658359 G A 39 72 BRCA TCGA-D8-A27I AHRR SNP Missense_Mutation 5 434764 C T 19 49 BRCA TCGA-D8-A27I GPRC6A SNP Silent 6 117130687 C G 18 45 BRCA TCGA-D8-A27I ZNF425 SNP Missense_Mutation 7 148815337 T C 52 66 BRCA TCGA-D8-A27I PSMG3 SNP Missense_Mutation 7 1607460 G C 44 58 BRCA TCGA-D8-A27I CSPP1 SNP Silent 8 68062079 A G 8 58 BRCA TCGA-D8-A27I IKBKAP SNP Silent 9 111663920 G A 45 65 BRCA TCGA-D8-A27I CNTRL SNP Missense_Mutation 9 123922564 G A 48 58 BRCA TCGA-D8-A27K ARV1 INS Frame_Shift_Ins 1 231131566 - A 25 51 BRCA TCGA-D8-A27K TTC22 SNP Silent 1 55251674 C T 19 39 BRCA TCGA-D8-A27K IFI44 SNP Missense_Mutation 1 79120883 A G 12 52 BRCA TCGA-D8-A27K TACC2 SNP Missense_Mutation 10 123954680 C T 23 55 BRCA TCGA-D8-A27K GATA3 INS Frame_Shift_Ins 10 8111558 - AATA 17 78 BRCA TCGA-D8-A27K DENND5B SNP Missense_Mutation 12 31613237 G C 43 98 BRCA TCGA-D8-A27K OR6C3 SNP Missense_Mutation 12 55725992 G A 40 39 BRCA TCGA-D8-A27K FRY SNP Missense_Mutation 13 32753825 C T 21 100 BRCA TCGA-D8-A27K RYR3 SNP Nonsense_Mutation 15 34064135 C A 29 88 BRCA TCGA-D8-A27K B4GALNT2 SNP Nonsense_Mutation 17 47246211 C T 27 65 BRCA TCGA-D8-A27K HGS SNP Missense_Mutation 17 79662012 G A 34 81 BRCA TCGA-D8-A27K NBAS SNP Missense_Mutation 2 15651439 A T 14 51 BRCA TCGA-D8-A27K GNLY SNP Silent 2 85923124 G T 35 41 BRCA TCGA-D8-A27K COL4A6 SNP Missense_Mutation 23 107402723 C A 27 69 BRCA TCGA-D8-A27K PIK3CA DEL In_Frame_Del 3 178916944 AAG - 1 89 BRCA TCGA-D8-A27K SEMA6A SNP Missense_Mutation 5 115822497 G A 37 77 BRCA TCGA-D8-A27K S100Z SNP Missense_Mutation 5 76173644 A G 3 89 BRCA TCGA-D8-A27K OPRM1 SNP Silent 6 154412457 T C 51 50 BRCA TCGA-D8-A27K TPMT SNP Silent 6 18132371 C T 18 41 BRCA TCGA-D8-A27K CDC5L SNP Splice_Site 6 44413391 G C 33 100 BRCA TCGA-D8-A27K LRRC61 SNP Missense_Mutation 7 150034402 G A 39 48 BRCA TCGA-D8-A27K OGDH SNP Silent 7 44713499 G A 35 62 BRCA TCGA-D8-A27K PURG SNP Missense_Mutation 8 30890012 C T 23 82 BRCA TCGA-D8-A27L NAV1 SNP Nonsense_Mutation 1 201772760 C G 29 98 BRCA TCGA-D8-A27L RERE SNP Nonsense_Mutation 1 8426006 C T 21 100 BRCA TCGA-D8-A27L PPRC1 SNP Missense_Mutation 10 103908402 C T 29 69 BRCA TCGA-D8-A27L PTEN INS Frame_Shift_Ins 10 89624271 - T 12 66 BRCA TCGA-D8-A27L OTUB1 SNP Missense_Mutation 11 63764394 T C 52 75 BRCA TCGA-D8-A27L NEIL1 SNP Missense_Mutation 15 75641328 G A 41 64 BRCA TCGA-D8-A27L KAT8 SNP Missense_Mutation 16 31141789 C T 30 97 BRCA TCGA-D8-A27L RHOT2 SNP Silent 16 723516 C T 32 68 BRCA TCGA-D8-A27L GREB1L SNP Silent 18 19088425 C T 19 52 BRCA TCGA-D8-A27L CDH7 SNP Missense_Mutation 18 63547657 A G 6 90 BRCA TCGA-D8-A27L ZNF254 SNP Missense_Mutation 19 24270126 G A 33 44 BRCA TCGA-D8-A27L NPAS1 SNP Missense_Mutation 19 47535538 C T 22 62 BRCA TCGA-D8-A27L ZNF417 SNP Missense_Mutation 19 58423433 G A 37 67 BRCA TCGA-D8-A27L TTC30B SNP Silent 2 178417084 T C 53 53 BRCA TCGA-D8-A27L FSIP2 SNP Missense_Mutation 2 186625798 G A 42 43 BRCA TCGA-D8-A27L CAD SNP Missense_Mutation 2 27447710 A G 16 90 BRCA TCGA-D8-A27L KDM3A SNP Missense_Mutation 2 86709187 G A 47 89 BRCA TCGA-D8-A27L KANSL3 SNP Missense_Mutation 2 97268573 G C 47 95 BRCA TCGA-D8-A27L SGK2 SNP Missense_Mutation 20 42195054 G A 47 42 BRCA TCGA-D8-A27L TMPRSS6 SNP Missense_Mutation 22 37482397 G A 38 69 BRCA TCGA-D8-A27L PAK3 SNP Silent 23 110385364 T A 62 56 BRCA TCGA-D8-A27L FRMPD4 SNP Missense_Mutation 23 12736552 C A 25 93 BRCA TCGA-D8-A27L PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-D8-A27L MASP1 SNP Silent 3 186953790 G A 39 30 BRCA TCGA-D8-A27L LRRC15 SNP Silent 3 194080618 G A 37 45 BRCA TCGA-D8-A27L LRRC15 SNP Silent 3 194080750 C T 23 43 BRCA TCGA-D8-A27L AZI2 SNP Missense_Mutation 3 28381965 G C 45 61 BRCA TCGA-D8-A27L FOXP1 SNP Missense_Mutation 3 71021818 G A 38 100 BRCA TCGA-D8-A27L ANK2 SNP Silent 4 114158316 C T 19 50 BRCA TCGA-D8-A27L PCDHGB6 SNP Missense_Mutation 5 140788421 G A 35 86 BRCA TCGA-D8-A27L C5orf22 SNP Splice_Site 5 31545752 G A 33 80 BRCA TCGA-D8-A27L MAP3K1 INS Frame_Shift_Ins 5 56180536 - A 33 78 BRCA TCGA-D8-A27L MAP3K1 DEL In_Frame_Del 5 56180586 CAT - 17 57 BRCA TCGA-D8-A27L FAM131B SNP Missense_Mutation 7 143056010 G C 45 93 BRCA TCGA-D8-A27L ZNF483 SNP Silent 9 114290002 G A 41 60 BRCA TCGA-D8-A27M VPS13D SNP Silent 1 12374322 C A 32 68 BRCA TCGA-D8-A27M OR10K1 SNP Missense_Mutation 1 158435435 T G 63 48 BRCA TCGA-D8-A27M FMO1 SNP Silent 1 171250104 C T 19 50 BRCA TCGA-D8-A27M CEP350 SNP Missense_Mutation 1 180062936 A G 8 56 BRCA TCGA-D8-A27M CNKSR1 SNP Missense_Mutation 1 26508367 A C 1 67 BRCA TCGA-D8-A27M LRRC8C SNP Missense_Mutation 1 90180366 C A 23 99 BRCA TCGA-D8-A27M AGRN SNP Missense_Mutation 1 984735 A T 11 88 BRCA TCGA-D8-A27M PANX3 SNP Missense_Mutation 11 124489712 G C 41 85 BRCA TCGA-D8-A27M NCAPD3 SNP Missense_Mutation 11 134090556 T A 56 53 BRCA TCGA-D8-A27M ALKBH3 SNP Missense_Mutation 11 43940636 G A 41 71 BRCA TCGA-D8-A27M GSTP1 SNP Missense_Mutation 11 67352214 C G 18 63 BRCA TCGA-D8-A27M STARD10 SNP Missense_Mutation 11 72468901 C T 31 75 BRCA TCGA-D8-A27M OASL SNP Missense_Mutation 12 121476669 C T 27 49 BRCA TCGA-D8-A27M C12orf70 SNP Missense_Mutation 12 27654981 G A 38 46 BRCA TCGA-D8-A27M MYO16 SNP Missense_Mutation 13 109496701 G C 44 89 BRCA TCGA-D8-A27M TJP1 SNP Missense_Mutation 15 30011076 C G 20 50 BRCA TCGA-D8-A27M C15orf53 SNP Silent 15 38990578 C G 24 50 BRCA TCGA-D8-A27M ANPEP SNP Missense_Mutation 15 90342682 T G 55 60 BRCA TCGA-D8-A27M ZNF263 SNP Silent 16 3336103 C T 32 49 BRCA TCGA-D8-A27M ADCY9 SNP Missense_Mutation 16 4057514 C G 27 45 BRCA TCGA-D8-A27M FTSJD1 SNP Missense_Mutation 16 71318994 A C 1 89 BRCA TCGA-D8-A27M NF1 DEL Splice_Site 17 29670148 TAAAAGG - 61 88 BRCA TCGA-D8-A27M OTOP2 SNP Missense_Mutation 17 72920980 G A 40 55 BRCA TCGA-D8-A27M TP53 SNP Nonsense_Mutation 17 7578263 G A 39 67 BRCA TCGA-D8-A27M LILRA1 SNP Nonsense_Mutation 19 55106797 C A 28 53 BRCA TCGA-D8-A27M GCC2 SNP Nonsense_Mutation 2 109086705 C A 29 62 BRCA TCGA-D8-A27M POTEJ SNP Missense_Mutation 2 131414573 A C 3 73 BRCA TCGA-D8-A27M CCDC74A SNP Missense_Mutation 2 132288293 G C 41 68 BRCA TCGA-D8-A27M KIF5C SNP Missense_Mutation 2 149868144 G T 37 84 BRCA TCGA-D8-A27M TTN SNP Splice_Site 2 179477304 C G 32 100 BRCA TCGA-D8-A27M FAM171B SNP Nonsense_Mutation 2 187626600 G T 45 59 BRCA TCGA-D8-A27M APMAP SNP Missense_Mutation 20 24954310 G C 44 60 BRCA TCGA-D8-A27M ATP9A SNP Splice_site 20 50238710 A T 2 88 BRCA TCGA-D8-A27M IGLC3 SNP Silent 22 23248691 C T 17 65 BRCA TCGA-D8-A27M TCF20 SNP Missense_Mutation 22 42564676 G T 46 87 BRCA TCGA-D8-A27M SMC1B SNP Silent 22 45802482 G A 45 60 BRCA TCGA-D8-A27M ZNF75D SNP Silent 23 134426226 G T 43 57 BRCA TCGA-D8-A27M GYG2 SNP Silent 23 2761348 G A 37 48 BRCA TCGA-D8-A27M ZNF81 SNP Missense_Mutation 23 47774912 C A 32 54 BRCA TCGA-D8-A27M XRN1 SNP Missense_Mutation 3 142102248 C T 31 64 BRCA TCGA-D8-A27M MUC4 SNP Silent 3 195506982 G C 43 54 BRCA TCGA-D8-A27M TET2 DEL In_Frame_Del 4 106155404 CTC - 32 79 BRCA TCGA-D8-A27M TMEM155 SNP Missense_Mutation 4 122682813 G A 38 50 BRCA TCGA-D8-A27M FREM3 SNP Missense_Mutation 4 144545312 C T 17 72 BRCA TCGA-D8-A27M TMPRSS11D SNP Missense_Mutation 4 68725377 T C 58 49 BRCA TCGA-D8-A27M DSPP SNP Silent 4 88537123 C T 27 45 BRCA TCGA-D8-A27M STK10 SNP Silent 5 171533635 C T 27 45 BRCA TCGA-D8-A27M KIF2A SNP Missense_Mutation 5 61642964 A G 14 62 BRCA TCGA-D8-A27M HLA-F SNP Missense_Mutation 6 29692856 C T 26 45 BRCA TCGA-D8-A27M KIFC1 SNP Silent 6 33371565 T C 56 44 BRCA TCGA-D8-A27M KIF6 SNP Missense_Mutation 6 39507890 G A 39 55 BRCA TCGA-D8-A27M IMPG1 SNP Missense_Mutation 6 76728458 G T 34 52 BRCA TCGA-D8-A27M VSTM2A DEL Frame_Shift_Del 7 54610496 TC - 62 59 BRCA TCGA-D8-A27M FAM83A SNP Splice_Site 8 124221764 G A 34 50 BRCA TCGA-D8-A27M SPTAN1 SNP Missense_Mutation 9 131367318 C G 28 99 BRCA TCGA-D8-A27M PMPCA SNP Missense_Mutation 9 139313014 A C 10 89 BRCA TCGA-D8-A27M FAM166A SNP Missense_Mutation 9 140138642 G C 33 71 BRCA TCGA-D8-A27M DOCK8 SNP Silent 9 390476 C T 30 70 BRCA TCGA-D8-A27N CFHR5 SNP Missense_Mutation 1 196952137 T G 58 53 BRCA TCGA-D8-A27N ZDHHC18 SNP Splice_Site 1 27176930 G A 40 96 BRCA TCGA-D8-A27N RBBP4 SNP Silent 1 33138484 C T 29 83 BRCA TCGA-D8-A27N CPT2 SNP Missense_Mutation 1 53676854 G A 38 100 BRCA TCGA-D8-A27N SERBP1 SNP Missense_Mutation 1 67891834 C T 31 94 BRCA TCGA-D8-A27N TRUB1 SNP Missense_Mutation 10 116710886 C T 18 59 BRCA TCGA-D8-A27N OR51E2 SNP Missense_Mutation 11 4703136 G T 43 54 BRCA TCGA-D8-A27N APLNR SNP Missense_Mutation 11 57003529 C T 27 100 BRCA TCGA-D8-A27N SLC22A11 SNP Silent 11 64338508 G A 38 66 BRCA TCGA-D8-A27N PCF11 SNP Silent 11 82877694 A G 15 49 BRCA TCGA-D8-A27N PTGES3 SNP Missense_Mutation 12 57065615 C G 32 82 BRCA TCGA-D8-A27N SYNE2 DEL Frame_Shift_Del 14 64687206 GTGAGCA - 40 56 BRCA TCGA-D8-A27N DNAJC17 SNP Silent 15 41060225 G A 37 37 BRCA TCGA-D8-A27N LONP2 SNP Silent 16 48303976 C T 19 57 BRCA TCGA-D8-A27N SAMD14 SNP Missense_Mutation 17 48191567 G A 33 82 BRCA TCGA-D8-A27N GH2 SNP Missense_Mutation 17 61958411 C A 24 52 BRCA TCGA-D8-A27N C17orf28 SNP Missense_Mutation 17 72951961 G A 33 99 BRCA TCGA-D8-A27N TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-D8-A27N FASN SNP Silent 17 80040021 C T 19 40 BRCA TCGA-D8-A27N DSEL SNP Missense_Mutation 18 65178341 G C 41 70 BRCA TCGA-D8-A27N ENOSF1 SNP Missense_Mutation 18 674341 T A 56 49 BRCA TCGA-D8-A27N SUGP1 SNP Missense_Mutation 19 19390149 G T 48 58 BRCA TCGA-D8-A27N FCAR SNP Missense_Mutation 19 55399502 C A 20 47 BRCA TCGA-D8-A27N DIS3L2 SNP Missense_Mutation 2 233164783 G A 39 84 BRCA TCGA-D8-A27N ABCG8 SNP Splice_site 2 44071747 G A 35 95 BRCA TCGA-D8-A27N SEPT5 SNP Missense_Mutation 22 19708187 C T 27 56 BRCA TCGA-D8-A27N MYH9 SNP Nonsense_Mutation 22 36684952 C A 32 87 BRCA TCGA-D8-A27N EIF3L DEL In_Frame_Del 22 38273806 GCA - 46 99 BRCA TCGA-D8-A27N SBF1 SNP Missense_Mutation 22 50906107 C T 19 37 BRCA TCGA-D8-A27N GATA1 SNP Silent 23 48650324 C T 19 40 BRCA TCGA-D8-A27N NHSL2 SNP Silent 23 71360164 G A 39 28 BRCA TCGA-D8-A27N PLD1 SNP Missense_Mutation 3 171455363 C T 28 84 BRCA TCGA-D8-A27N VPS8 SNP Missense_Mutation 3 184570300 C G 30 96 BRCA TCGA-D8-A27N MFAP3L SNP Missense_Mutation 4 170912535 A T 8 84 BRCA TCGA-D8-A27N DSPP SNP Silent 4 88537324 C T 17 56 BRCA TCGA-D8-A27N KLHL3 DEL Frame_Shift_Del 5 136969761 TA - 57 91 BRCA TCGA-D8-A27N ADAMTS16 SNP Missense_Mutation 5 5242237 G T 34 50 BRCA TCGA-D8-A27N IL31RA SNP Missense_Mutation 5 55178962 C T 27 50 BRCA TCGA-D8-A27N ZC3HC1 SNP Missense_Mutation 7 129664182 C A 27 64 BRCA TCGA-D8-A27N MYO1G SNP Missense_Mutation 7 45004603 G T 46 64 BRCA TCGA-D8-A27N USP42 SNP Splice_Site 7 6175584 T A 57 91 BRCA TCGA-D8-A27N AKAP9 SNP Missense_Mutation 7 91682267 A C 7 61 BRCA TCGA-D8-A27N PKHD1L1 SNP Missense_Mutation 8 110424512 C A 25 80 BRCA TCGA-D8-A27N CYP7B1 SNP Nonsense_Mutation 8 65509378 T A 63 70 BRCA TCGA-D8-A27N PAPPA SNP Silent 9 119115961 T A 55 47 BRCA TCGA-D8-A27N VLDLR SNP Missense_Mutation 9 2648254 G A 48 88 BRCA TCGA-D8-A27P FLG SNP Nonsense_Mutation 1 152285536 G T 37 65 BRCA TCGA-D8-A27P JTB DEL Frame_Shift_Del 1 153949695 GGGGGAGGCCA - 47 75 BRCA TCGA-D8-A27P JTB DEL Frame_Shift_Del 1 153949711 CC - 30 58 BRCA TCGA-D8-A27P ACTN2 SNP Missense_Mutation 1 236908040 G A 38 100 BRCA TCGA-D8-A27P MACF1 SNP Missense_Mutation 1 39775287 G A 46 44 BRCA TCGA-D8-A27P PLCE1 SNP Missense_Mutation 10 96018782 G A 38 100 BRCA TCGA-D8-A27P NUMA1 SNP Nonsense_Mutation 11 71726685 G A 46 71 BRCA TCGA-D8-A27P LAG3 SNP Nonsense_Mutation 12 6882468 C T 27 53 BRCA TCGA-D8-A27P AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-D8-A27P PTGDR SNP Silent 14 52735144 C T 21 74 BRCA TCGA-D8-A27P LRRC37A3 SNP Missense_Mutation 17 62892159 G T 34 2 BRCA TCGA-D8-A27P SRP68 SNP Silent 17 74041393 A T 11 37 BRCA TCGA-D8-A27P DSG3 SNP Missense_Mutation 18 29055684 G T 38 26 BRCA TCGA-D8-A27P NETO1 SNP Missense_Mutation 18 70526127 T C 50 78 BRCA TCGA-D8-A27P SCN3A SNP Silent 2 165947251 C T 31 35 BRCA TCGA-D8-A27P FBXO11 SNP Missense_Mutation 2 48049368 T C 52 91 BRCA TCGA-D8-A27P R3HDML SNP Silent 20 42965927 C T 24 49 BRCA TCGA-D8-A27P ALG12 SNP Missense_Mutation 22 50304162 A T 9 86 BRCA TCGA-D8-A27P UBA1 SNP Silent 23 47073947 A G 4 60 BRCA TCGA-D8-A27P HUWE1 SNP Missense_Mutation 23 53561598 C T 27 96 BRCA TCGA-D8-A27P COLQ SNP Missense_Mutation 3 15531117 C T 19 76 BRCA TCGA-D8-A27P PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-D8-A27P NSD1 SNP Missense_Mutation 5 176637903 G T 47 72 BRCA TCGA-D8-A27P NOS3 SNP Silent 7 150698507 C T 28 69 BRCA TCGA-D8-A27P MLL3 SNP Splice_Site 7 152012425 T G 53 83 BRCA TCGA-D8-A27P ELN SNP Splice_site 7 73471003 C T 23 39 BRCA TCGA-D8-A27R SLC45A3 SNP Missense_Mutation 1 205632534 C A 19 69 BRCA TCGA-D8-A27R EPRS SNP Missense_Mutation 1 220170582 C T 32 93 BRCA TCGA-D8-A27R FAM13C SNP Missense_Mutation 10 61028447 G A 38 62 BRCA TCGA-D8-A27R LARP4B SNP Nonsense_Mutation 10 882385 G T 46 73 BRCA TCGA-D8-A27R PLCB3 SNP Missense_Mutation 11 64030194 G A 45 97 BRCA TCGA-D8-A27R CLCF1 SNP Missense_Mutation 11 67132963 C T 31 69 BRCA TCGA-D8-A27R FBXO33 SNP Missense_Mutation 14 39870722 C T 30 85 BRCA TCGA-D8-A27R ESRRB SNP Silent 14 76964669 C T 25 64 BRCA TCGA-D8-A27R GOLGA8A SNP Silent 15 34676192 C T 28 54 BRCA TCGA-D8-A27R BLOC1S6 SNP Splice_site 15 45884474 C G 19 86 BRCA TCGA-D8-A27R TAOK1 SNP Missense_Mutation 17 27822641 G T 41 100 BRCA TCGA-D8-A27R MAPK4 SNP Missense_Mutation 18 48190626 G A 40 58 BRCA TCGA-D8-A27R AXL SNP Missense_Mutation 19 41743948 C T 31 60 BRCA TCGA-D8-A27R RGPD4 SNP Missense_Mutation 2 108487890 C G 20 55 BRCA TCGA-D8-A27R INPP1 SNP Silent 2 191236038 A G 11 47 BRCA TCGA-D8-A27R ANKRD36C SNP Missense_Mutation 2 96581796 G T 48 56 BRCA TCGA-D8-A27R ASXL1 SNP Missense_Mutation 20 31024797 T C 62 55 BRCA TCGA-D8-A27R MOV10L1 SNP Missense_Mutation 22 50563962 C T 22 87 BRCA TCGA-D8-A27R PLXNB3 SNP Silent 23 153043430 C T 24 51 BRCA TCGA-D8-A27R MXRA5 SNP Missense_Mutation 23 3235330 G A 38 64 BRCA TCGA-D8-A27R KIAA1109 SNP Splice_Site 4 123254965 G T 44 100 BRCA TCGA-D8-A27R TLL1 SNP Splice_Site 4 166999053 A T 7 94 BRCA TCGA-D8-A27R PCDHAC2 SNP Missense_Mutation 5 140348477 T C 49 90 BRCA TCGA-D8-A27R CARD6 SNP Missense_Mutation 5 40853931 C A 18 42 BRCA TCGA-D8-A27R HTR1B SNP Silent 6 78172317 G C 35 51 BRCA TCGA-D8-A27R AKAP9 SNP Missense_Mutation 7 91641818 C T 31 63 BRCA TCGA-D8-A27R SPAG8 DNP Missense_Mutation 9 35811883 CC TA 26 55 BRCA TCGA-D8-A27T PADI3 SNP Silent 1 17597589 T C 51 39 BRCA TCGA-D8-A27T GPR137B SNP Missense_Mutation 1 236341813 G T 35 51 BRCA TCGA-D8-A27T SCT SNP Silent 11 626464 G A 38 42 BRCA TCGA-D8-A27T RIN1 SNP Missense_Mutation 11 66102467 G C 43 85 BRCA TCGA-D8-A27T PITPNM1 SNP Silent 11 67260513 G A 39 41 BRCA TCGA-D8-A27T PCDH9 SNP Missense_Mutation 13 67802512 C T 27 74 BRCA TCGA-D8-A27T GNPNAT1 SNP Splice_Site 14 53247396 C A 17 92 BRCA TCGA-D8-A27T EIF2AK4 SNP Missense_Mutation 15 40295488 G T 46 87 BRCA TCGA-D8-A27T CDH1 SNP Splice_site 16 68846166 G A 39 57 BRCA TCGA-D8-A27T CDH7 SNP Silent 18 63477101 G A 38 36 BRCA TCGA-D8-A27T SCN2A SNP Missense_Mutation 2 166223736 G A 39 69 BRCA TCGA-D8-A27T TMPRSS15 SNP Missense_Mutation 21 19770556 G A 45 75 BRCA TCGA-D8-A27T TIMP3 SNP Missense_Mutation 22 33255330 C A 23 69 BRCA TCGA-D8-A27T ARMCX5 SNP Silent 23 101858272 C T 32 43 BRCA TCGA-D8-A27T PGK1 SNP Missense_Mutation 23 77378415 T C 64 66 BRCA TCGA-D8-A27T PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-D8-A27T MFI2 SNP Missense_Mutation 3 196754653 C G 27 52 BRCA TCGA-D8-A27T GRIA2 SNP Missense_Mutation 4 158238831 G A 48 96 BRCA TCGA-D8-A27T KLHL5 SNP Silent 4 39114838 A G 7 50 BRCA TCGA-D8-A27T SLC44A4 DEL In_Frame_Del 6 31832672 AAG - 1 75 BRCA TCGA-D8-A27T PTPRN2 SNP Missense_Mutation 7 157959701 G T 42 62 BRCA TCGA-D8-A27T GUSB SNP Missense_Mutation 7 65445321 C T 17 56 BRCA TCGA-D8-A27T GAL3ST4 SNP Missense_Mutation 7 99757738 C T 27 84 BRCA TCGA-D8-A27T EHMT1 SNP Missense_Mutation 9 140707938 G A 40 80 BRCA TCGA-D8-A27W ST6GALNAC5 SNP Missense_Mutation 1 77528749 G A 38 99 BRCA TCGA-D8-A27W SHANK2 SNP Missense_Mutation 11 70507831 C G 29 92 BRCA TCGA-D8-A27W FBXO34 SNP Missense_Mutation 14 55817206 T C 57 51 BRCA TCGA-D8-A27W SEMA6D SNP Silent 15 48052559 G A 42 64 BRCA TCGA-D8-A27W IGFBP4 SNP Missense_Mutation 17 38610201 G A 37 92 BRCA TCGA-D8-A27W ASAP2 SNP Missense_Mutation 2 9467980 A G 3 91 BRCA TCGA-D8-A27W TSHZ2 SNP Silent 20 51872712 C T 18 61 BRCA TCGA-D8-A27W KIAA2022 SNP Missense_Mutation 23 73960046 C T 19 95 BRCA TCGA-D8-A27W PLSCR2 SNP Missense_Mutation 3 146171892 G A 47 58 BRCA TCGA-D8-A27W KCNAB1 SNP Missense_Mutation 3 156249278 G A 46 95 BRCA TCGA-D8-A27W POU4F2 SNP Missense_Mutation 4 147561811 G A 37 87 BRCA TCGA-D8-A27W CCKAR SNP Missense_Mutation 4 26491823 C G 31 67 BRCA TCGA-D8-A27W ZNF721 SNP Missense_Mutation 4 437075 C T 17 79 BRCA TCGA-D8-A27W KIF4B SNP Missense_Mutation 5 154396151 A G 11 54 BRCA TCGA-D8-A27W RASGEF1C SNP Missense_Mutation 5 179563506 G A 39 62 BRCA TCGA-D8-A27W CENPW SNP Splice_Site 6 126669611 G A 35 76 BRCA TCGA-D8-A27W LRRC16A SNP Missense_Mutation 6 25450164 G A 38 93 BRCA TCGA-D8-A27W MYLK4 SNP Missense_Mutation 6 2689172 G A 39 85 BRCA TCGA-D8-A27W MDGA1 SNP Missense_Mutation 6 37620076 G C 45 84 BRCA TCGA-D8-A27W RPA3 SNP Missense_Mutation 7 7680043 C T 30 82 BRCA TCGA-D8-A27W NXPH1 SNP Missense_Mutation 7 8790657 C T 19 74 BRCA TCGA-D8-A27W CEL SNP Missense_Mutation 9 135944591 G A 48 49 BRCA TCGA-D8-A27W AGTPBP1 SNP Missense_Mutation 9 88272487 G A 39 100 BRCA TCGA-E2-A105 ETV3 SNP Missense_Mutation 1 157105452 G A 41 83 BRCA TCGA-E2-A105 IFI16 SNP Missense_Mutation 1 159021640 G C 36 74 BRCA TCGA-E2-A105 SPEN INS Frame_Shift_Ins 1 16202800 - ATAGAGATCCTCGA 53 90 BRCA TCGA-E2-A105 FZD8 SNP Missense_Mutation 10 35929970 G C 42 91 BRCA TCGA-E2-A105 PRKG1 SNP Missense_Mutation 10 52834557 G T 35 59 BRCA TCGA-E2-A105 GOLGA7B SNP Silent 10 99619286 C T 27 50 BRCA TCGA-E2-A105 MEN1 DEL Frame_Shift_Del 11 64577330 AGAC - 15 55 BRCA TCGA-E2-A105 MYO1H SNP Missense_Mutation 12 109831184 G A 39 79 BRCA TCGA-E2-A105 ATP2A2 SNP Silent 12 110778619 C T 25 56 BRCA TCGA-E2-A105 OAS1 SNP Missense_Mutation 12 113357242 C G 29 46 BRCA TCGA-E2-A105 ZCCHC8 SNP Missense_Mutation 12 122966134 T C 57 89 BRCA TCGA-E2-A105 CACNA1C SNP Missense_Mutation 12 2714315 A G 2 89 BRCA TCGA-E2-A105 MBD6 INS Frame_Shift_Ins 12 57918753 - TTGGCCCC 56 64 BRCA TCGA-E2-A105 DDX11L8 SNP Nonsense_Mutation 12 9464152 C T 21 74 BRCA TCGA-E2-A105 SLC10A2 SNP Missense_Mutation 13 103698518 T C 61 48 BRCA TCGA-E2-A105 SHISA2 SNP Missense_Mutation 13 26621019 G A 39 61 BRCA TCGA-E2-A105 OR4M1 SNP Missense_Mutation 14 20249411 T G 59 53 BRCA TCGA-E2-A105 GPHN SNP Missense_Mutation 14 67610087 A G 10 89 BRCA TCGA-E2-A105 UNC79 SNP Nonsense_Mutation 14 94097185 C T 19 70 BRCA TCGA-E2-A105 ZNF18 SNP Silent 17 11881385 A G 9 49 BRCA TCGA-E2-A105 NCOR1 DEL Frame_Shift_Del 17 16068397 A - 9 89 BRCA TCGA-E2-A105 CCDC144A SNP Missense_Mutation 17 16593944 G A 38 46 BRCA TCGA-E2-A105 KRTAP9-9 SNP Missense_Mutation 17 39412058 C T 23 49 BRCA TCGA-E2-A105 MSI2 SNP Missense_Mutation 17 55478762 T A 49 90 BRCA TCGA-E2-A105 LPHN1 SNP Missense_Mutation 19 14274041 T C 57 60 BRCA TCGA-E2-A105 MYO9B SNP Missense_Mutation 19 17317135 C G 22 97 BRCA TCGA-E2-A105 FPR1 SNP Missense_Mutation 19 52249706 G A 37 55 BRCA TCGA-E2-A105 ZNF814 SNP Missense_Mutation 19 58384888 G A 38 55 BRCA TCGA-E2-A105 MUC16 SNP Silent 19 8982254 C T 25 49 BRCA TCGA-E2-A105 SP3 DEL Splice_site 2 174777994 TCTAAA - 54 64 BRCA TCGA-E2-A105 ANKAR SNP Missense_Mutation 2 190560903 G C 48 86 BRCA TCGA-E2-A105 SAG SNP Missense_Mutation 2 234235788 G C 44 57 BRCA TCGA-E2-A105 PASK SNP Missense_Mutation 2 242066754 C T 23 38 BRCA TCGA-E2-A105 DQX1 SNP Missense_Mutation 2 74746321 G T 33 59 BRCA TCGA-E2-A105 SLC4A11 SNP Missense_Mutation 20 3209309 C T 28 73 BRCA TCGA-E2-A105 CTNNBL1 SNP Missense_Mutation 20 36488710 G A 35 93 BRCA TCGA-E2-A105 RTEL1 SNP Silent 20 62311271 G A 47 69 BRCA TCGA-E2-A105 RTEL1 SNP Missense_Mutation 20 62312019 G A 46 50 BRCA TCGA-E2-A105 PLXNB2 DEL In_Frame_Del 22 50720419 GTG - 40 79 BRCA TCGA-E2-A105 TLR8 SNP Nonsense_Mutation 23 12937622 C T 29 55 BRCA TCGA-E2-A105 FMR1 SNP Silent 23 147024827 C T 27 51 BRCA TCGA-E2-A105 MAGEB6 SNP Missense_Mutation 23 26212547 T G 57 60 BRCA TCGA-E2-A105 FAM123B SNP Silent 23 63411643 G A 33 55 BRCA TCGA-E2-A105 CCDC37 SNP Splice_Site 3 126137618 G A 40 87 BRCA TCGA-E2-A105 NLGN1 SNP Missense_Mutation 3 173998327 G T 40 100 BRCA TCGA-E2-A105 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A105 DAG1 SNP Missense_Mutation 3 49568483 C T 32 70 BRCA TCGA-E2-A105 TKT SNP Missense_Mutation 3 53263320 C T 23 100 BRCA TCGA-E2-A105 TCF7 SNP Missense_Mutation 5 133473797 C T 19 50 BRCA TCGA-E2-A105 GABRA6 SNP Silent 5 161116329 C T 29 65 BRCA TCGA-E2-A105 LOC100289470 SNP Missense_Mutation 5 178951453 G A 39 38 BRCA TCGA-E2-A105 TMEM174 SNP Missense_Mutation 5 72469563 G A 39 65 BRCA TCGA-E2-A105 C6orf225 SNP Missense_Mutation 6 112421934 T A 61 72 BRCA TCGA-E2-A105 STX7 SNP Silent 6 132792638 C T 20 48 BRCA TCGA-E2-A105 COL19A1 SNP Missense_Mutation 6 70733563 T G 51 56 BRCA TCGA-E2-A105 SDK1 SNP Missense_Mutation 7 4056882 G A 33 100 BRCA TCGA-E2-A105 ZNF804B DEL Frame_Shift_Del 7 88962693 C - 18 95 BRCA TCGA-E2-A105 RP1 SNP Silent 8 55539493 G A 47 50 BRCA TCGA-E2-A105 LRRC8A SNP Missense_Mutation 9 131670265 G C 36 69 BRCA TCGA-E2-A105 PLIN2 SNP Missense_Mutation 9 19126264 G A 40 100 BRCA TCGA-E2-A105 FAM189A2 SNP Silent 9 71998865 A T 12 55 BRCA TCGA-E2-A105 C9orf64 SNP Missense_Mutation 9 86571300 G T 38 52 BRCA TCGA-E2-A107 TADA1 SNP Silent 1 166839061 C T 28 66 BRCA TCGA-E2-A107 KIF14 SNP Missense_Mutation 1 200567540 T A 52 59 BRCA TCGA-E2-A107 RERE SNP Silent 1 8422899 C T 31 51 BRCA TCGA-E2-A107 PIWIL1 SNP Silent 12 130833916 G A 33 49 BRCA TCGA-E2-A107 GLIPR1 SNP Missense_Mutation 12 75892695 A G 14 50 BRCA TCGA-E2-A107 AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-E2-A107 CHD2 SNP Missense_Mutation 15 93527570 T G 64 88 BRCA TCGA-E2-A107 MAPK8IP3 SNP Missense_Mutation 16 1812950 A G 2 59 BRCA TCGA-E2-A107 CDH1 SNP Splice_site 16 68845762 G A 35 97 BRCA TCGA-E2-A107 ENSG00000228443 SNP Silent 16 953592 G A 47 68 BRCA TCGA-E2-A107 TBC1D3B SNP Silent 17 34497337 G A 37 61 BRCA TCGA-E2-A107 CLUL1 SNP Missense_Mutation 18 645027 G A 45 60 BRCA TCGA-E2-A107 SLC9A4 SNP Missense_Mutation 2 103120013 G T 41 100 BRCA TCGA-E2-A107 RALGAPB DEL Frame_Shift_Del 20 37186945 CAAA - 25 79 BRCA TCGA-E2-A107 LOC100288309 DEL Frame_Shift_Del 22 19164060 CCCCTTCCCCT - 22 30 BRCA TCGA-E2-A107 GPRASP2 SNP Missense_Mutation 23 101971061 G A 38 45 BRCA TCGA-E2-A107 ACSL4 SNP Silent 23 108926449 C T 20 56 BRCA TCGA-E2-A107 RPGR SNP Missense_Mutation 23 38182684 G A 45 95 BRCA TCGA-E2-A107 WNK3 SNP Splice_site 23 54337552 G A 40 97 BRCA TCGA-E2-A107 ZDHHC15 SNP Splice_site 23 74637024 G T 43 73 BRCA TCGA-E2-A107 MSL2 DEL Frame_Shift_Del 3 135871094 G - 35 69 BRCA TCGA-E2-A107 FAT4 SNP Silent 4 126372689 C T 19 45 BRCA TCGA-E2-A107 CEP44 SNP Silent 4 175224934 C T 30 47 BRCA TCGA-E2-A107 DDX46 SNP Missense_Mutation 5 134147500 C A 32 58 BRCA TCGA-E2-A107 PAIP2 SNP Silent 5 138699536 C T 19 50 BRCA TCGA-E2-A107 PCDHB6 SNP Missense_Mutation 5 140531214 G A 38 45 BRCA TCGA-E2-A107 HMGCS1 SNP Missense_Mutation 5 43295926 A G 8 92 BRCA TCGA-E2-A107 ENC1 SNP Missense_Mutation 5 73931474 A T 8 48 BRCA TCGA-E2-A107 ADAT2 SNP Silent 6 143759817 G A 37 43 BRCA TCGA-E2-A107 KIAA0240 INS Frame_Shift_Ins 6 42797341 - T 20 74 BRCA TCGA-E2-A107 GALNT11 SNP Missense_Mutation 7 151810410 G C 41 78 BRCA TCGA-E2-A107 ZHX1 SNP Missense_Mutation 8 124265786 C T 29 99 BRCA TCGA-E2-A107 ADAMTSL1 SNP Missense_Mutation 9 18574047 G A 44 100 BRCA TCGA-E2-A108 WNT2B SNP Silent 1 113052034 G C 45 57 BRCA TCGA-E2-A108 SYT6 SNP Splice_Site 1 114640500 C T 32 100 BRCA TCGA-E2-A108 CD101 SNP Missense_Mutation 1 117568312 G C 46 58 BRCA TCGA-E2-A108 CERS2 SNP Missense_Mutation 1 150939642 T C 51 91 BRCA TCGA-E2-A108 TCHHL1 SNP Missense_Mutation 1 152058642 C G 29 50 BRCA TCGA-E2-A108 ASH1L SNP Silent 1 155311856 G A 33 76 BRCA TCGA-E2-A108 SLAMF1 SNP Silent 1 160582299 C T 28 50 BRCA TCGA-E2-A108 CACNA1E SNP Missense_Mutation 1 181767528 G A 39 97 BRCA TCGA-E2-A108 EDEM3 SNP Missense_Mutation 1 184686738 C G 32 99 BRCA TCGA-E2-A108 FAM5C SNP Missense_Mutation 1 190195266 G A 33 95 BRCA TCGA-E2-A108 DUSP10 SNP Silent 1 221913018 G C 45 75 BRCA TCGA-E2-A108 SPRTN SNP Nonsense_Mutation 1 231474280 C T 29 73 BRCA TCGA-E2-A108 HEATR1 SNP Missense_Mutation 1 236746159 C G 30 90 BRCA TCGA-E2-A108 TCEB3 SNP Missense_Mutation 1 24086048 A C 12 55 BRCA TCGA-E2-A108 ZNF695 SNP Nonsense_Mutation 1 247150838 C A 29 43 BRCA TCGA-E2-A108 TRIM58 SNP Silent 1 248028177 G A 45 57 BRCA TCGA-E2-A108 PFKFB3 SNP Missense_Mutation 10 6262763 G A 37 100 BRCA TCGA-E2-A108 POLR3A SNP Missense_Mutation 10 79784369 G C 45 97 BRCA TCGA-E2-A108 PLCE1 DEL In_Frame_Del 10 95930961 CCAATT - 26 98 BRCA TCGA-E2-A108 CCDC34 SNP Nonsense_Mutation 11 27379074 G C 45 54 BRCA TCGA-E2-A108 INTS5 SNP Missense_Mutation 11 62414645 G T 45 69 BRCA TCGA-E2-A108 INTS5 SNP Missense_Mutation 11 62415402 G A 45 71 BRCA TCGA-E2-A108 INTS5 SNP Missense_Mutation 11 62417233 G C 41 58 BRCA TCGA-E2-A108 NAALADL1 SNP Missense_Mutation 11 64813656 C T 25 60 BRCA TCGA-E2-A108 PHC1 SNP Missense_Mutation 12 9070338 C G 32 95 BRCA TCGA-E2-A108 ZMYM2 SNP Missense_Mutation 13 20641001 G A 33 88 BRCA TCGA-E2-A108 ZMYM2 SNP Missense_Mutation 13 20657091 T C 63 68 BRCA TCGA-E2-A108 FRY SNP Missense_Mutation 13 32811934 G A 37 100 BRCA TCGA-E2-A108 SPTB SNP Silent 14 65263386 C T 29 57 BRCA TCGA-E2-A108 TMEM87A SNP Missense_Mutation 15 42564268 G C 41 54 BRCA TCGA-E2-A108 UBR1 SNP Missense_Mutation 15 43244537 C G 32 84 BRCA TCGA-E2-A108 AGPHD1 SNP Missense_Mutation 15 78825858 C G 32 74 BRCA TCGA-E2-A108 TXNDC11 SNP Missense_Mutation 16 11782228 C A 20 63 BRCA TCGA-E2-A108 ZNF785 SNP Silent 16 30596468 G A 45 42 BRCA TCGA-E2-A108 HMOX2 SNP Silent 16 4559694 C G 30 50 BRCA TCGA-E2-A108 KCTD19 SNP Missense_Mutation 16 67325298 G T 35 80 BRCA TCGA-E2-A108 CNTNAP1 SNP Splice_Site 17 40849571 G C 33 100 BRCA TCGA-E2-A108 SNX11 SNP Missense_Mutation 17 46189979 A G 11 71 BRCA TCGA-E2-A108 TP53 SNP Missense_Mutation 17 7577120 C T 19 94 BRCA TCGA-E2-A108 LPIN2 SNP Silent 18 2960806 C T 29 59 BRCA TCGA-E2-A108 LAMA1 SNP Silent 18 7032992 G C 35 54 BRCA TCGA-E2-A108 LILRA2 SNP Missense_Mutation 19 55086977 G A 37 50 BRCA TCGA-E2-A108 FSHR SNP Missense_Mutation 2 49217745 G A 41 81 BRCA TCGA-E2-A108 EPB41L1 SNP Missense_Mutation 20 34778680 T G 62 60 BRCA TCGA-E2-A108 CD40 SNP Nonsense_Mutation 20 44750513 C T 29 54 BRCA TCGA-E2-A108 SMC1A SNP Missense_Mutation 23 53430747 C G 32 93 BRCA TCGA-E2-A108 INTU SNP Missense_Mutation 4 128564824 G C 33 60 BRCA TCGA-E2-A108 TLR10 SNP Silent 4 38775802 T C 60 48 BRCA TCGA-E2-A108 GRXCR1 SNP Missense_Mutation 4 42964964 G A 40 96 BRCA TCGA-E2-A108 NDFIP1 SNP Missense_Mutation 5 141511786 A T 10 89 BRCA TCGA-E2-A108 PNISR SNP Missense_Mutation 6 99860583 A G 5 90 BRCA TCGA-E2-A108 FAM221A SNP Silent 7 23729011 C G 21 57 BRCA TCGA-E2-A108 ATP6V1B2 SNP Silent 8 20067922 C G 30 52 BRCA TCGA-E2-A108 PTK2B SNP Missense_Mutation 8 27293815 C A 32 79 BRCA TCGA-E2-A108 STX17 SNP Missense_Mutation 9 102677570 A G 16 66 BRCA TCGA-E2-A108 C9orf41 SNP Silent 9 77631273 T C 54 59 BRCA TCGA-E2-A109 C1orf194 SNP Missense_Mutation 1 109649741 G T 44 75 BRCA TCGA-E2-A109 CSDE1 SNP Missense_Mutation 1 115276687 G C 45 86 BRCA TCGA-E2-A109 C1orf226 DEL Frame_Shift_Del 1 162351928 GA - 45 52 BRCA TCGA-E2-A109 ARHGEF10L SNP Missense_Mutation 1 17964425 A G 7 73 BRCA TCGA-E2-A109 CDK18 SNP Missense_Mutation 1 205492722 G A 39 60 BRCA TCGA-E2-A109 ECE1 DEL In_Frame_Del 1 21585236 AGA - 11 72 BRCA TCGA-E2-A109 ZFYVE9 DEL Frame_Shift_Del 1 52703400 G - 47 73 BRCA TCGA-E2-A109 CUBN SNP Missense_Mutation 10 16878371 T A 52 52 BRCA TCGA-E2-A109 PLAU SNP Missense_Mutation 10 75672712 G A 44 88 BRCA TCGA-E2-A109 CHORDC1 DEL Frame_Shift_Del 11 89938668 C - 26 94 BRCA TCGA-E2-A109 MYO1H SNP Missense_Mutation 12 109835562 G A 39 78 BRCA TCGA-E2-A109 ANO6 SNP Missense_Mutation 12 45810499 G A 40 72 BRCA TCGA-E2-A109 OSBPL8 SNP Missense_Mutation 12 76769099 G T 48 98 BRCA TCGA-E2-A109 SDR39U1 DEL Frame_Shift_Del 14 24910883 C - 17 78 BRCA TCGA-E2-A109 AKAP6 SNP Silent 14 33290718 G A 35 55 BRCA TCGA-E2-A109 ENSG00000187812 SNP Missense_Mutation 15 76073206 G A 37 53 BRCA TCGA-E2-A109 SCAPER SNP Missense_Mutation 15 77067311 G C 35 62 BRCA TCGA-E2-A109 NOMO2 SNP Missense_Mutation 16 18542797 A C 11 68 BRCA TCGA-E2-A109 SIAH1 SNP Missense_Mutation 16 48396255 T C 60 92 BRCA TCGA-E2-A109 ADCY7 SNP Missense_Mutation 16 50334759 C T 23 61 BRCA TCGA-E2-A109 ZNF778 SNP Silent 16 89294298 A G 4 34 BRCA TCGA-E2-A109 ZNF276 SNP Missense_Mutation 16 89804566 C T 26 59 BRCA TCGA-E2-A109 WSB1 SNP Missense_Mutation 17 25637136 C G 23 57 BRCA TCGA-E2-A109 TP53 SNP Missense_Mutation 17 7577538 C T 23 80 BRCA TCGA-E2-A109 TNRC6C SNP Missense_Mutation 17 76046623 G A 37 67 BRCA TCGA-E2-A109 MAPRE2 SNP Missense_Mutation 18 32720267 C A 17 69 BRCA TCGA-E2-A109 LAMA1 SNP Missense_Mutation 18 7033069 C A 28 100 BRCA TCGA-E2-A109 OR7A17 SNP Missense_Mutation 19 14992035 T C 51 48 BRCA TCGA-E2-A109 MYO9B SNP Silent 19 17212770 C T 19 53 BRCA TCGA-E2-A109 PGLS SNP Missense_Mutation 19 17631846 G T 38 88 BRCA TCGA-E2-A109 SMG9 SNP Missense_Mutation 19 44254812 G T 43 93 BRCA TCGA-E2-A109 TTYH1 SNP Missense_Mutation 19 54930398 C A 22 58 BRCA TCGA-E2-A109 NLRP7 SNP Silent 19 55451245 C T 28 44 BRCA TCGA-E2-A109 ZNF579 SNP Missense_Mutation 19 56090537 C T 27 59 BRCA TCGA-E2-A109 IL18R1 SNP Silent 2 103001345 C T 19 46 BRCA TCGA-E2-A109 UGT1A4 SNP Silent 2 234681013 C T 27 50 BRCA TCGA-E2-A109 CAPN10 SNP Silent 2 241535825 C T 18 52 BRCA TCGA-E2-A109 ZNF512 INS Frame_Shift_Ins 2 27806578 - A 53 47 BRCA TCGA-E2-A109 XDH SNP Missense_Mutation 2 31605877 T A 56 81 BRCA TCGA-E2-A109 EFEMP1 SNP Silent 2 56149540 C T 21 69 BRCA TCGA-E2-A109 CHD6 DEL Frame_Shift_Del 20 40127957 A - 7 86 BRCA TCGA-E2-A109 CHKB SNP Missense_Mutation 22 51018482 T G 54 87 BRCA TCGA-E2-A109 RAB9B SNP Silent 23 103080361 G T 35 51 BRCA TCGA-E2-A109 CXorf57 SNP Missense_Mutation 23 105868340 C G 17 54 BRCA TCGA-E2-A109 COL4A6 SNP Missense_Mutation 23 107418928 C A 30 85 BRCA TCGA-E2-A109 KIAA1210 SNP Missense_Mutation 23 118239020 C A 31 52 BRCA TCGA-E2-A109 OCRL SNP Missense_Mutation 23 128709149 A T 3 60 BRCA TCGA-E2-A109 BCORL1 SNP Silent 23 129171506 G A 37 20 BRCA TCGA-E2-A109 OFD1 SNP Missense_Mutation 23 13764997 A T 3 58 BRCA TCGA-E2-A109 DMD SNP Missense_Mutation 23 32305754 G T 46 68 BRCA TCGA-E2-A109 MED14 SNP Missense_Mutation 23 40573796 C T 25 95 BRCA TCGA-E2-A109 FOXP3 INS Frame_Shift_Ins 23 49108054 - AGGCCTG 21 54 BRCA TCGA-E2-A109 BMP15 SNP Missense_Mutation 23 50659007 G T 44 27 BRCA TCGA-E2-A109 KIAA2022 SNP Missense_Mutation 23 73961157 G T 33 73 BRCA TCGA-E2-A109 KLF15 SNP Nonsense_Mutation 3 126062722 C A 31 94 BRCA TCGA-E2-A109 SOX14 SNP Missense_Mutation 3 137484051 C T 27 74 BRCA TCGA-E2-A109 SHOX2 SNP Silent 3 157823481 C T 27 54 BRCA TCGA-E2-A109 SKIL SNP Missense_Mutation 3 170102343 A G 13 81 BRCA TCGA-E2-A109 HTR3D SNP Missense_Mutation 3 183756031 C T 19 45 BRCA TCGA-E2-A109 LEPREL1 SNP Missense_Mutation 3 189681772 G C 44 84 BRCA TCGA-E2-A109 STAC DEL Frame_Shift_Del 3 36547281 C - 26 80 BRCA TCGA-E2-A109 DHX30 SNP Missense_Mutation 3 47891166 G C 36 75 BRCA TCGA-E2-A109 RNF123 SNP Missense_Mutation 3 49758302 C T 32 84 BRCA TCGA-E2-A109 SPATA4 DEL Frame_Shift_Del 4 177113974 A - 5 23 BRCA TCGA-E2-A109 MSANTD1 SNP Silent 4 3255096 G A 38 51 BRCA TCGA-E2-A109 LPHN3 SNP Missense_Mutation 4 62936207 C A 26 100 BRCA TCGA-E2-A109 PCDHB12 SNP Silent 5 140590645 C A 31 43 BRCA TCGA-E2-A109 HAVCR1 SNP Missense_Mutation 5 156456795 G A 41 55 BRCA TCGA-E2-A109 ATP10B SNP Missense_Mutation 5 159992485 C A 31 77 BRCA TCGA-E2-A109 PDE10A SNP Missense_Mutation 6 165749696 C A 22 100 BRCA TCGA-E2-A109 MLLT4 DEL Frame_Shift_Del 6 168291556 C - 29 93 BRCA TCGA-E2-A109 WBSCR17 SNP Missense_Mutation 7 71036313 T A 60 84 BRCA TCGA-E2-A109 ZNF804B SNP Missense_Mutation 7 88965288 C T 30 48 BRCA TCGA-E2-A109 WISP1 SNP Missense_Mutation 8 134232988 C T 27 58 BRCA TCGA-E2-A109 BAI1 SNP Missense_Mutation 8 143545758 C T 27 70 BRCA TCGA-E2-A109 ELP3 DEL Frame_Shift_Del 8 27995267 C - 18 97 BRCA TCGA-E2-A109 AKNA SNP Missense_Mutation 9 117106081 G A 47 61 BRCA TCGA-E2-A109 IFT74 DEL Frame_Shift_Del 9 26984316 A - 5 90 BRCA TCGA-E2-A109 TMEM8B SNP Missense_Mutation 9 35853682 G T 43 75 BRCA TCGA-E2-A109 DIRAS2 SNP Silent 9 93375798 G A 33 60 BRCA TCGA-E2-A10A OR10Z1 SNP Missense_Mutation 1 158577134 G C 41 51 BRCA TCGA-E2-A10A GATA3 INS Frame_Shift_Ins 10 8115922 - C 6 77 BRCA TCGA-E2-A10A NUDT22 SNP Missense_Mutation 11 63994510 C G 17 73 BRCA TCGA-E2-A10A MYO7A SNP Silent 11 76872024 C T 32 51 BRCA TCGA-E2-A10A DAO SNP Silent 12 109288095 G A 38 32 BRCA TCGA-E2-A10A DIP2B SNP Missense_Mutation 12 51128870 A G 9 92 BRCA TCGA-E2-A10A DIS3 SNP Silent 13 73349502 C T 24 53 BRCA TCGA-E2-A10A RALGAPA1 SNP Missense_Mutation 14 36155819 C T 23 62 BRCA TCGA-E2-A10A SNX20 SNP Silent 16 50709816 C T 29 47 BRCA TCGA-E2-A10A MMP15 SNP Missense_Mutation 16 58075625 C A 18 93 BRCA TCGA-E2-A10A SLC38A8 SNP Missense_Mutation 16 84050323 C T 25 52 BRCA TCGA-E2-A10A COL1A1 SNP Splice_Site 17 48274595 C T 24 93 BRCA TCGA-E2-A10A GDPD1 SNP Silent 17 57326133 C T 32 52 BRCA TCGA-E2-A10A ACTN4 SNP Missense_Mutation 19 39216514 G T 37 93 BRCA TCGA-E2-A10A LTBP4 SNP Nonsense_Mutation 19 41125311 G T 37 79 BRCA TCGA-E2-A10A LILRB2 SNP Missense_Mutation 19 54784374 C T 28 47 BRCA TCGA-E2-A10A SLC12A5 SNP Missense_Mutation 20 44665941 G T 47 96 BRCA TCGA-E2-A10A USP11 SNP Silent 23 47101513 A G 2 55 BRCA TCGA-E2-A10A MAP3K1 INS Frame_Shift_Ins 5 56152454 - A 29 51 BRCA TCGA-E2-A10A ESR1 DEL Frame_Shift_Del 6 152129128 CCGT - 18 52 BRCA TCGA-E2-A10A WRNIP1 SNP Missense_Mutation 6 2785389 G A 35 71 BRCA TCGA-E2-A10A C7orf50 SNP Missense_Mutation 7 1037383 C A 26 86 BRCA TCGA-E2-A10A MGAM SNP Missense_Mutation 7 141752647 G T 48 46 BRCA TCGA-E2-A10B AKR7L SNP Missense_Mutation 1 19595111 C T 29 62 BRCA TCGA-E2-A10B MUC2 SNP Missense_Mutation 11 1101591 C T 30 70 BRCA TCGA-E2-A10B ZBTB3 SNP Missense_Mutation 11 62520584 C T 32 75 BRCA TCGA-E2-A10B UBC SNP Missense_Mutation 12 125396964 G A 39 90 BRCA TCGA-E2-A10B PIWIL1 SNP Missense_Mutation 12 130834441 G A 41 85 BRCA TCGA-E2-A10B ATP11A SNP Missense_Mutation 13 113474225 G A 38 86 BRCA TCGA-E2-A10B NEK3 SNP Missense_Mutation 13 52707946 C T 32 68 BRCA TCGA-E2-A10B TEP1 SNP Missense_Mutation 14 20863645 T G 55 62 BRCA TCGA-E2-A10B USP8 SNP Missense_Mutation 15 50782646 C G 22 98 BRCA TCGA-E2-A10B CRLF3 SNP Silent 17 29123274 G A 44 56 BRCA TCGA-E2-A10B HGS SNP Silent 17 79662007 C T 25 33 BRCA TCGA-E2-A10B PSMG2 SNP Missense_Mutation 18 12706699 G A 33 84 BRCA TCGA-E2-A10B KRI1 SNP Silent 19 10670170 C T 29 51 BRCA TCGA-E2-A10B ZNF563 SNP Missense_Mutation 19 12432110 T C 57 53 BRCA TCGA-E2-A10B HOOK2 SNP Missense_Mutation 19 12876942 G A 38 57 BRCA TCGA-E2-A10B ZNF85 SNP Missense_Mutation 19 21131813 G C 45 47 BRCA TCGA-E2-A10B ZNF571 SNP Missense_Mutation 19 38055672 G T 36 69 BRCA TCGA-E2-A10B ZNF525 SNP Silent 19 53884186 A G 4 42 BRCA TCGA-E2-A10B POTED SNP Missense_Mutation 21 15011930 G C 33 61 BRCA TCGA-E2-A10B PRR5-ARHGAP8 SNP Silent 22 45204250 C T 19 52 BRCA TCGA-E2-A10B CXorf57 SNP Silent 23 105905447 G A 37 45 BRCA TCGA-E2-A10B ERCC6L SNP Missense_Mutation 23 71425081 G T 35 60 BRCA TCGA-E2-A10B SLCO2A1 SNP Silent 3 133661577 G A 39 35 BRCA TCGA-E2-A10B AADAC SNP Nonsense_Mutation 3 151535239 C A 29 87 BRCA TCGA-E2-A10B PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A10B TET2 SNP Missense_Mutation 4 106190828 C T 29 100 BRCA TCGA-E2-A10B PCDH7 SNP Nonsense_Mutation 4 30921826 C T 29 99 BRCA TCGA-E2-A10B WDFY3 DEL Frame_Shift_Del 4 85657344 ATTA - 16 52 BRCA TCGA-E2-A10B FNIP1 SNP Missense_Mutation 5 130834231 C G 32 97 BRCA TCGA-E2-A10B FAT2 SNP Missense_Mutation 5 150946518 C A 18 75 BRCA TCGA-E2-A10B LAMA2 SNP Missense_Mutation 6 129609065 C A 24 77 BRCA TCGA-E2-A10B HIST1H2AE SNP Silent 6 26217379 G T 45 63 BRCA TCGA-E2-A10B LAMB4 SNP Splice_site 7 107710329 A C 3 84 BRCA TCGA-E2-A10B ASB15 SNP Missense_Mutation 7 123269363 G A 47 100 BRCA TCGA-E2-A10B DGKB SNP Silent 7 14797340 T C 61 52 BRCA TCGA-E2-A10B POU6F2 SNP Missense_Mutation 7 39500226 C T 27 100 BRCA TCGA-E2-A10B HRSP12 SNP Missense_Mutation 8 99118536 C T 29 88 BRCA TCGA-E2-A10B AQP3 SNP Silent 9 33443389 C G 25 50 BRCA TCGA-E2-A10B VPS13A SNP Missense_Mutation 9 79931137 A G 1 89 BRCA TCGA-E2-A10C TAF13 SNP Silent 1 109607256 G A 33 56 BRCA TCGA-E2-A10C EXOSC10 SNP Missense_Mutation 1 11137494 C G 30 84 BRCA TCGA-E2-A10C DENND2D SNP Missense_Mutation 1 111737258 G C 45 73 BRCA TCGA-E2-A10C HIST2H2BE SNP Missense_Mutation 1 149858071 G C 33 66 BRCA TCGA-E2-A10C FDPS SNP Missense_Mutation 1 155282164 C A 20 67 BRCA TCGA-E2-A10C SYT11 SNP Missense_Mutation 1 155838071 C G 32 81 BRCA TCGA-E2-A10C CDK11B SNP Missense_Mutation 1 1573894 C G 30 89 BRCA TCGA-E2-A10C IFI16 SNP Missense_Mutation 1 159021644 A T 3 70 BRCA TCGA-E2-A10C RGS4 SNP Nonsense_Mutation 1 163044339 C T 29 63 BRCA TCGA-E2-A10C SCYL3 SNP Nonsense_Mutation 1 169831924 C A 32 61 BRCA TCGA-E2-A10C PRRX1 SNP Missense_Mutation 1 170695469 G C 41 94 BRCA TCGA-E2-A10C METTL13 SNP Nonsense_Mutation 1 171753159 G T 45 93 BRCA TCGA-E2-A10C CACNA1E SNP Missense_Mutation 1 181727119 C G 32 76 BRCA TCGA-E2-A10C RGS8 SNP Missense_Mutation 1 182616022 T A 59 90 BRCA TCGA-E2-A10C TPR SNP Missense_Mutation 1 186283810 C G 32 86 BRCA TCGA-E2-A10C TPR SNP Missense_Mutation 1 186316447 C T 32 96 BRCA TCGA-E2-A10C KCNT2 SNP Nonsense_Mutation 1 196295947 C A 29 100 BRCA TCGA-E2-A10C CAMSAP2 SNP Missense_Mutation 1 200818343 G A 45 98 BRCA TCGA-E2-A10C LMOD1 SNP Missense_Mutation 1 201869306 C T 29 47 BRCA TCGA-E2-A10C TRAF3IP3 SNP Silent 1 209953885 G A 33 53 BRCA TCGA-E2-A10C IRF6 SNP Missense_Mutation 1 209974721 C G 21 100 BRCA TCGA-E2-A10C NBPF3 SNP Silent 1 21800026 C T 29 52 BRCA TCGA-E2-A10C HHIPL2 SNP Silent 1 222721350 G A 33 65 BRCA TCGA-E2-A10C LEFTY2 SNP Missense_Mutation 1 226128645 G A 38 67 BRCA TCGA-E2-A10C WNT3A SNP Missense_Mutation 1 228246733 C T 31 98 BRCA TCGA-E2-A10C PEX10 SNP Missense_Mutation 1 2340225 G A 37 50 BRCA TCGA-E2-A10C HTR1D SNP Silent 1 23519996 G A 45 60 BRCA TCGA-E2-A10C RYR2 SNP Missense_Mutation 1 237670043 G C 33 87 BRCA TCGA-E2-A10C GRHL3 SNP Missense_Mutation 1 24664133 G C 45 75 BRCA TCGA-E2-A10C PHACTR4 SNP Missense_Mutation 1 28800206 G A 45 62 BRCA TCGA-E2-A10C PEF1 SNP Missense_Mutation 1 32098889 C T 29 92 BRCA TCGA-E2-A10C ZBTB8B SNP Missense_Mutation 1 32950879 G C 45 82 BRCA TCGA-E2-A10C CPT2 SNP Missense_Mutation 1 53668050 G A 45 48 BRCA TCGA-E2-A10C HEATR8 SNP Silent 1 55145599 G A 45 51 BRCA TCGA-E2-A10C C1orf168 SNP Silent 1 57189333 G A 45 60 BRCA TCGA-E2-A10C CHD5 SNP Missense_Mutation 1 6195315 G A 39 63 BRCA TCGA-E2-A10C LHX8 SNP Missense_Mutation 1 75622602 C T 19 96 BRCA TCGA-E2-A10C PPRC1 SNP Missense_Mutation 10 103906618 A G 8 83 BRCA TCGA-E2-A10C CELF2 SNP Silent 10 11299828 G A 45 65 BRCA TCGA-E2-A10C PAOX SNP Missense_Mutation 10 135194991 G A 45 41 BRCA TCGA-E2-A10C CUBN SNP Missense_Mutation 10 17087062 C G 30 50 BRCA TCGA-E2-A10C PTPLA SNP Missense_Mutation 10 17645931 C G 29 83 BRCA TCGA-E2-A10C ACBD5 SNP Splice_site 10 27486360 C G 29 69 BRCA TCGA-E2-A10C WAC SNP Missense_Mutation 10 28908478 G C 45 78 BRCA TCGA-E2-A10C FRMPD2 SNP Missense_Mutation 10 49414927 G A 45 65 BRCA TCGA-E2-A10C ERCC6 SNP Silent 10 50678496 C T 32 55 BRCA TCGA-E2-A10C ERCC6 SNP Missense_Mutation 10 50736490 C G 32 64 BRCA TCGA-E2-A10C LRRTM3 SNP Silent 10 68687691 C A 32 65 BRCA TCGA-E2-A10C STOX1 SNP Missense_Mutation 10 70646331 G C 33 99 BRCA TCGA-E2-A10C VCL SNP Nonsense_Mutation 10 75832608 C A 29 99 BRCA TCGA-E2-A10C POLR3A SNP Silent 10 79745020 C T 29 64 BRCA TCGA-E2-A10C NPAT SNP Missense_Mutation 11 108057261 G C 35 80 BRCA TCGA-E2-A10C ATM SNP Missense_Mutation 11 108170512 G A 33 80 BRCA TCGA-E2-A10C HYOU1 SNP Silent 11 118926849 C T 32 75 BRCA TCGA-E2-A10C TBRG1 SNP Silent 11 124495579 G A 33 62 BRCA TCGA-E2-A10C FLI1 SNP Missense_Mutation 11 128651915 G C 33 91 BRCA TCGA-E2-A10C NCAPD3 SNP Silent 11 134047318 C T 32 62 BRCA TCGA-E2-A10C TSSC4 SNP Missense_Mutation 11 2424787 G C 41 63 BRCA TCGA-E2-A10C RAG1 SNP Missense_Mutation 11 36597333 G C 33 100 BRCA TCGA-E2-A10C FNBP4 SNP Missense_Mutation 11 47772520 G A 33 71 BRCA TCGA-E2-A10C OR51A7 SNP Missense_Mutation 11 4929293 G C 33 63 BRCA TCGA-E2-A10C TRIM51 SNP Silent 11 55657466 C T 29 54 BRCA TCGA-E2-A10C ATL3 SNP Silent 11 63438846 G A 33 49 BRCA TCGA-E2-A10C STIP1 SNP Missense_Mutation 11 63965415 G A 37 98 BRCA TCGA-E2-A10C OR6A2 SNP Nonsense_Mutation 11 6816236 G T 37 70 BRCA TCGA-E2-A10C NLRP14 SNP Missense_Mutation 11 7067969 G C 33 69 BRCA TCGA-E2-A10C RNF169 SNP Missense_Mutation 11 74500681 C G 29 64 BRCA TCGA-E2-A10C C11orf30 SNP Silent 11 76175025 C A 29 67 BRCA TCGA-E2-A10C C11orf30 SNP Nonsense_Mutation 11 76175093 C G 29 98 BRCA TCGA-E2-A10C RPLP2 SNP Missense_Mutation 11 812762 G C 33 82 BRCA TCGA-E2-A10C FOLR4 SNP Missense_Mutation 11 94038866 G A 37 51 BRCA TCGA-E2-A10C DDX55 SNP Missense_Mutation 12 124101077 G A 45 99 BRCA TCGA-E2-A10C PLEKHA5 SNP Missense_Mutation 12 19467754 G C 33 96 BRCA TCGA-E2-A10C ITPR2 SNP Silent 12 26748416 G A 33 68 BRCA TCGA-E2-A10C IPO8 SNP Silent 12 30834604 C A 29 64 BRCA TCGA-E2-A10C KIAA1551 SNP Missense_Mutation 12 32138135 G A 37 61 BRCA TCGA-E2-A10C SLC2A13 SNP Missense_Mutation 12 40265720 C T 29 100 BRCA TCGA-E2-A10C FAM186A SNP Missense_Mutation 12 50724375 G C 33 72 BRCA TCGA-E2-A10C DIP2B SNP Silent 12 51076995 G A 45 58 BRCA TCGA-E2-A10C SCN8A SNP Missense_Mutation 12 52078046 G C 33 99 BRCA TCGA-E2-A10C OR6C2 SNP Splice_site 12 55846936 G C 33 45 BRCA TCGA-E2-A10C SUOX SNP Missense_Mutation 12 56397621 G A 45 97 BRCA TCGA-E2-A10C FOXJ2 SNP Silent 12 8200740 C T 22 59 BRCA TCGA-E2-A10C FGD6 SNP Missense_Mutation 12 95498801 G A 41 99 BRCA TCGA-E2-A10C PCCA SNP Missense_Mutation 13 100915005 C G 29 96 BRCA TCGA-E2-A10C ATP4B SNP Silent 13 114303695 C T 32 53 BRCA TCGA-E2-A10C TUBA3C SNP Silent 13 19751442 G T 45 45 BRCA TCGA-E2-A10C TUBA3C SNP Nonsense_Mutation 13 19751650 G T 45 81 BRCA TCGA-E2-A10C CENPJ SNP Missense_Mutation 13 25480951 C T 30 64 BRCA TCGA-E2-A10C PROSER1 SNP Silent 13 39587532 G A 45 61 BRCA TCGA-E2-A10C TRIM13 SNP Missense_Mutation 13 50587226 G A 45 57 BRCA TCGA-E2-A10C RTL1 SNP Missense_Mutation 14 101349406 C T 29 62 BRCA TCGA-E2-A10C AHNAK2 SNP Missense_Mutation 14 105410836 G A 37 61 BRCA TCGA-E2-A10C AHNAK2 SNP Silent 14 105418953 C G 29 45 BRCA TCGA-E2-A10C OR4K15 SNP Silent 14 20444652 G C 45 63 BRCA TCGA-E2-A10C OR4K14 SNP Missense_Mutation 14 20483291 C T 31 44 BRCA TCGA-E2-A10C ABHD4 SNP Missense_Mutation 14 23072319 G A 33 65 BRCA TCGA-E2-A10C PSMC6 SNP Missense_Mutation 14 53173920 G A 45 86 BRCA TCGA-E2-A10C PELI2 SNP Missense_Mutation 14 56757079 G A 37 69 BRCA TCGA-E2-A10C HIF1A SNP Silent 14 62193473 C G 29 51 BRCA TCGA-E2-A10C SYNE2 SNP Missense_Mutation 14 64669652 G A 33 100 BRCA TCGA-E2-A10C KIAA0247 SNP Missense_Mutation 14 70175690 T G 59 74 BRCA TCGA-E2-A10C C14orf118 SNP Silent 14 76621084 C G 29 49 BRCA TCGA-E2-A10C ISM2 SNP Silent 14 77942061 G A 41 64 BRCA TCGA-E2-A10C ATP10A SNP Missense_Mutation 15 25924558 G A 45 69 BRCA TCGA-E2-A10C RYR3 SNP Splice_Site 15 33765740 G T 44 96 BRCA TCGA-E2-A10C ZFYVE19 SNP Silent 15 41099931 G C 41 56 BRCA TCGA-E2-A10C TP53BP1 SNP Silent 15 43700247 G C 33 48 BRCA TCGA-E2-A10C SPG11 SNP Silent 15 44900705 G A 33 49 BRCA TCGA-E2-A10C B2M SNP Missense_Mutation 15 45003787 C T 32 52 BRCA TCGA-E2-A10C SLC28A2 SNP Nonsense_Mutation 15 45564978 C T 29 79 BRCA TCGA-E2-A10C BNC1 SNP Missense_Mutation 15 83933455 A T 8 93 BRCA TCGA-E2-A10C RLBP1 SNP Missense_Mutation 15 89762200 C T 32 75 BRCA TCGA-E2-A10C BLM SNP Silent 15 91312739 G A 45 58 BRCA TCGA-E2-A10C BLM SNP Missense_Mutation 15 91354615 C T 30 47 BRCA TCGA-E2-A10C TTC23 SNP Missense_Mutation 15 99715275 G A 45 79 BRCA TCGA-E2-A10C DEXI SNP Silent 16 11035707 G A 45 51 BRCA TCGA-E2-A10C TMC5 SNP Missense_Mutation 16 19468194 C G 29 60 BRCA TCGA-E2-A10C TMC5 SNP Missense_Mutation 16 19468321 C T 29 55 BRCA TCGA-E2-A10C ZP2 SNP Silent 16 21213434 C T 31 45 BRCA TCGA-E2-A10C ABCA3 SNP Missense_Mutation 16 2336827 G A 33 96 BRCA TCGA-E2-A10C APOBR SNP Missense_Mutation 16 28508304 G A 41 50 BRCA TCGA-E2-A10C APOBR SNP Missense_Mutation 16 28508563 G A 33 49 BRCA TCGA-E2-A10C ZSCAN10 SNP Missense_Mutation 16 3139999 G T 41 79 BRCA TCGA-E2-A10C C16orf58 SNP Missense_Mutation 16 31503569 C T 32 77 BRCA TCGA-E2-A10C ZNF267 SNP Missense_Mutation 16 31926785 G C 33 54 BRCA TCGA-E2-A10C ZNF267 SNP Missense_Mutation 16 31926979 G A 34 58 BRCA TCGA-E2-A10C SLX4 SNP Missense_Mutation 16 3633370 C G 32 56 BRCA TCGA-E2-A10C BBS2 SNP Missense_Mutation 16 56543943 G C 33 76 BRCA TCGA-E2-A10C NUP93 SNP Missense_Mutation 16 56782199 G A 45 100 BRCA TCGA-E2-A10C NLRC5 SNP Silent 16 57070087 G T 41 61 BRCA TCGA-E2-A10C CX3CL1 SNP Missense_Mutation 16 57416684 G A 45 51 BRCA TCGA-E2-A10C CNGB1 SNP Missense_Mutation 16 57994422 C T 29 53 BRCA TCGA-E2-A10C NFAT5 SNP Splice_Site 16 69718792 G T 34 53 BRCA TCGA-E2-A10C HP SNP Silent 16 72094180 C T 32 55 BRCA TCGA-E2-A10C DHX38 SNP Missense_Mutation 16 72133171 G A 45 93 BRCA TCGA-E2-A10C PMFBP1 SNP Missense_Mutation 16 72166725 C T 30 64 BRCA TCGA-E2-A10C MYH8 SNP Silent 17 10312474 G A 38 35 BRCA TCGA-E2-A10C RPA1 SNP Missense_Mutation 17 1795220 G A 41 84 BRCA TCGA-E2-A10C PAFAH1B1 SNP Missense_Mutation 17 2569362 C G 32 95 BRCA TCGA-E2-A10C NOS2 SNP Missense_Mutation 17 26101330 G A 45 100 BRCA TCGA-E2-A10C NUFIP2 SNP Missense_Mutation 17 27613780 G A 33 86 BRCA TCGA-E2-A10C NUFIP2 SNP Missense_Mutation 17 27613855 G T 33 84 BRCA TCGA-E2-A10C NUFIP2 SNP Nonsense_Mutation 17 27614141 G A 37 61 BRCA TCGA-E2-A10C ATAD5 SNP Missense_Mutation 17 29162675 G C 33 62 BRCA TCGA-E2-A10C CCL13 SNP Silent 17 32684555 G A 33 50 BRCA TCGA-E2-A10C DDX52 SNP Silent 17 35981176 C T 30 55 BRCA TCGA-E2-A10C ABI3 SNP Missense_Mutation 17 47299506 G C 33 69 BRCA TCGA-E2-A10C SCPEP1 SNP Splice_Site 17 55065576 G C 33 98 BRCA TCGA-E2-A10C SMG8 SNP Missense_Mutation 17 57290598 G C 33 84 BRCA TCGA-E2-A10C TANC2 SNP Silent 17 61490920 G A 37 64 BRCA TCGA-E2-A10C ENSG00000215769 SNP Missense_Mutation 17 62750718 G C 45 78 BRCA TCGA-E2-A10C DNAH2 SNP Silent 17 7691442 C T 29 59 BRCA TCGA-E2-A10C NARF SNP Missense_Mutation 17 80441594 G A 45 80 BRCA TCGA-E2-A10C TBCD SNP Missense_Mutation 17 80828156 G A 40 68 BRCA TCGA-E2-A10C SPDYE4 SNP Missense_Mutation 17 8661642 G A 40 54 BRCA TCGA-E2-A10C MYL12A SNP Missense_Mutation 18 3253328 C T 29 100 BRCA TCGA-E2-A10C PIAS2 SNP Missense_Mutation 18 44409752 C T 29 100 BRCA TCGA-E2-A10C RTTN SNP Missense_Mutation 18 67833354 G T 45 70 BRCA TCGA-E2-A10C ARHGAP28 SNP Missense_Mutation 18 6876136 G C 45 59 BRCA TCGA-E2-A10C SMARCA4 SNP Missense_Mutation 19 11170495 G A 41 94 BRCA TCGA-E2-A10C RTBDN SNP Silent 19 12936703 G A 40 51 BRCA TCGA-E2-A10C CACNA1A SNP Missense_Mutation 19 13414674 C T 31 72 BRCA TCGA-E2-A10C C19orf57 SNP Missense_Mutation 19 13993709 C T 23 63 BRCA TCGA-E2-A10C CYP4F3 SNP Missense_Mutation 19 15757899 C T 30 51 BRCA TCGA-E2-A10C FCHO1 SNP Missense_Mutation 19 17888953 G C 33 82 BRCA TCGA-E2-A10C SUGP2 SNP Missense_Mutation 19 19136939 C G 32 55 BRCA TCGA-E2-A10C MEF2B SNP Silent 19 19257861 G A 47 58 BRCA TCGA-E2-A10C GMIP SNP Missense_Mutation 19 19750962 C T 30 75 BRCA TCGA-E2-A10C ZNF14 SNP Silent 19 19843741 C G 31 41 BRCA TCGA-E2-A10C ZNF431 SNP Missense_Mutation 19 21365597 T A 53 49 BRCA TCGA-E2-A10C ZNF181 SNP Missense_Mutation 19 35232425 G C 33 51 BRCA TCGA-E2-A10C APBA3 SNP Silent 19 3751546 C T 31 49 BRCA TCGA-E2-A10C ZNF585B SNP Missense_Mutation 19 37677367 C T 29 52 BRCA TCGA-E2-A10C CAPN12 SNP Missense_Mutation 19 39229285 C T 29 62 BRCA TCGA-E2-A10C SIRT2 SNP Silent 19 39371529 C T 29 47 BRCA TCGA-E2-A10C SPTBN4 SNP Missense_Mutation 19 41029470 G A 42 81 BRCA TCGA-E2-A10C PSG3 SNP Missense_Mutation 19 43233520 T A 58 57 BRCA TCGA-E2-A10C MYPOP SNP Missense_Mutation 19 46393934 G C 38 51 BRCA TCGA-E2-A10C HRC SNP Silent 19 49655283 G C 33 54 BRCA TCGA-E2-A10C PTOV1 SNP Silent 19 50360970 C G 29 45 BRCA TCGA-E2-A10C ZNF528 SNP Missense_Mutation 19 52919501 G A 45 48 BRCA TCGA-E2-A10C ZNF28 SNP Missense_Mutation 19 53304398 G C 45 61 BRCA TCGA-E2-A10C NLRP2 SNP Missense_Mutation 19 55493625 G C 45 50 BRCA TCGA-E2-A10C ZNF470 SNP Missense_Mutation 19 57088676 C A 29 56 BRCA TCGA-E2-A10C ZNF470 SNP Missense_Mutation 19 57088944 C G 32 72 BRCA TCGA-E2-A10C ZNF776 SNP Missense_Mutation 19 58265613 G C 41 70 BRCA TCGA-E2-A10C ZNF324 SNP Missense_Mutation 19 58980584 C T 30 55 BRCA TCGA-E2-A10C HNRNPM SNP Missense_Mutation 19 8533661 G A 45 98 BRCA TCGA-E2-A10C MUC16 SNP Missense_Mutation 19 9058093 T C 64 49 BRCA TCGA-E2-A10C HS6ST1 SNP Missense_Mutation 2 129026048 G C 45 75 BRCA TCGA-E2-A10C ZRANB3 SNP Missense_Mutation 2 135957946 C A 30 72 BRCA TCGA-E2-A10C CYTIP SNP Missense_Mutation 2 158272514 G A 41 79 BRCA TCGA-E2-A10C RBMS1 SNP Missense_Mutation 2 161135089 C G 29 100 BRCA TCGA-E2-A10C PXDN SNP Silent 2 1653128 G A 45 59 BRCA TCGA-E2-A10C SCN3A SNP Nonsense_Mutation 2 165946941 G A 45 100 BRCA TCGA-E2-A10C XIRP2 SNP Silent 2 168102468 C G 29 48 BRCA TCGA-E2-A10C XIRP2 SNP Missense_Mutation 2 168105425 C T 29 57 BRCA TCGA-E2-A10C TTN SNP Missense_Mutation 2 179452019 C T 29 100 BRCA TCGA-E2-A10C DNAH7 SNP Missense_Mutation 2 196699060 C G 29 100 BRCA TCGA-E2-A10C DNAH7 SNP Missense_Mutation 2 196825113 G C 33 71 BRCA TCGA-E2-A10C ZNF142 DEL Frame_Shift_Del 2 219509726 GCTTGTGGCT - 34 78 BRCA TCGA-E2-A10C SLC4A3 SNP Silent 2 220501551 C T 29 74 BRCA TCGA-E2-A10C SH3YL1 SNP Missense_Mutation 2 230038 C G 32 75 BRCA TCGA-E2-A10C PSMD1 SNP Missense_Mutation 2 231940241 G C 33 98 BRCA TCGA-E2-A10C LOC391358 SNP Missense_Mutation 2 26251148 C T 30 63 BRCA TCGA-E2-A10C CIB4 SNP Silent 2 26805698 G A 45 64 BRCA TCGA-E2-A10C CAD SNP Silent 2 27460410 G A 33 66 BRCA TCGA-E2-A10C CAPN13 SNP Nonsense_Mutation 2 30974021 G C 45 51 BRCA TCGA-E2-A10C TRAPPC12 SNP Missense_Mutation 2 3483128 G A 37 83 BRCA TCGA-E2-A10C DHX57 SNP Missense_Mutation 2 39050344 G C 41 100 BRCA TCGA-E2-A10C ZFP36L2 SNP Missense_Mutation 2 43453450 G C 37 91 BRCA TCGA-E2-A10C PLEKHH2 SNP Missense_Mutation 2 43934621 C G 23 70 BRCA TCGA-E2-A10C LRPPRC SNP Missense_Mutation 2 44121732 C G 29 79 BRCA TCGA-E2-A10C LHCGR SNP Missense_Mutation 2 48915942 C G 29 91 BRCA TCGA-E2-A10C EML6 SNP Missense_Mutation 2 55126862 C A 31 77 BRCA TCGA-E2-A10C XPO1 SNP Missense_Mutation 2 61715794 C T 32 100 BRCA TCGA-E2-A10C ACTG2 SNP Missense_Mutation 2 74141897 C T 30 96 BRCA TCGA-E2-A10C DCTN1 SNP Nonsense_Mutation 2 74594520 G A 48 76 BRCA TCGA-E2-A10C CTNNA2 SNP Missense_Mutation 2 80097054 G T 33 100 BRCA TCGA-E2-A10C CIAO1 SNP Silent 2 96936858 G A 45 58 BRCA TCGA-E2-A10C SIRPB1 SNP Missense_Mutation 20 1559202 C G 30 51 BRCA TCGA-E2-A10C C20orf72 SNP Missense_Mutation 20 17956500 G A 45 57 BRCA TCGA-E2-A10C CST1 SNP Missense_Mutation 20 23728509 C T 31 43 BRCA TCGA-E2-A10C KIF3B SNP Silent 20 30898618 C T 29 57 BRCA TCGA-E2-A10C PXMP4 SNP Missense_Mutation 20 32295624 G A 41 51 BRCA TCGA-E2-A10C MYH7B SNP Missense_Mutation 20 33568478 C T 29 70 BRCA TCGA-E2-A10C ADAM33 SNP Nonsense_Mutation 20 3655266 G C 45 50 BRCA TCGA-E2-A10C SIGLEC1 SNP Silent 20 3677446 G A 35 60 BRCA TCGA-E2-A10C SLC32A1 SNP Nonsense_Mutation 20 37356662 C T 29 94 BRCA TCGA-E2-A10C CHD6 SNP Nonsense_Mutation 20 40045305 G A 37 62 BRCA TCGA-E2-A10C NCOA5 SNP Missense_Mutation 20 44708029 C T 31 83 BRCA TCGA-E2-A10C SULF2 SNP Silent 20 46365493 C T 32 62 BRCA TCGA-E2-A10C TSHZ2 SNP Silent 20 51589838 G A 37 46 BRCA TCGA-E2-A10C FAM210B SNP Missense_Mutation 20 54941255 G C 33 98 BRCA TCGA-E2-A10C EDN3 SNP Missense_Mutation 20 57876668 G A 37 36 BRCA TCGA-E2-A10C BMP2 SNP Nonsense_Mutation 20 6759581 C T 29 100 BRCA TCGA-E2-A10C TPTE SNP Missense_Mutation 21 10941954 G A 45 75 BRCA TCGA-E2-A10C CLDN8 SNP Silent 21 31587809 G A 45 59 BRCA TCGA-E2-A10C PRDM15 SNP Silent 21 43222950 G A 38 51 BRCA TCGA-E2-A10C PRMT2 SNP Missense_Mutation 21 48084230 C T 32 62 BRCA TCGA-E2-A10C MTMR3 SNP Missense_Mutation 22 30415818 G A 33 72 BRCA TCGA-E2-A10C PISD SNP Silent 22 32019736 G C 33 78 BRCA TCGA-E2-A10C ZC3H7B SNP Silent 22 41752441 G A 33 62 BRCA TCGA-E2-A10C ZBED4 SNP Missense_Mutation 22 50279480 G A 45 97 BRCA TCGA-E2-A10C NXF3 SNP Missense_Mutation 23 102338576 C G 29 52 BRCA TCGA-E2-A10C LOC100287881 SNP Missense_Mutation 23 102979967 G A 33 58 BRCA TCGA-E2-A10C ESX1 SNP Missense_Mutation 23 103499124 C T 32 39 BRCA TCGA-E2-A10C CLDN2 SNP Silent 23 106171608 C G 32 56 BRCA TCGA-E2-A10C CLDN2 SNP Silent 23 106171827 C G 32 51 BRCA TCGA-E2-A10C ALG13 SNP Missense_Mutation 23 110970088 G A 37 72 BRCA TCGA-E2-A10C STAG2 SNP Missense_Mutation 23 123182867 C G 29 98 BRCA TCGA-E2-A10C ZNF75D SNP Silent 23 134427833 C T 29 49 BRCA TCGA-E2-A10C DDX26B SNP Silent 23 134715540 C A 29 56 BRCA TCGA-E2-A10C MAP7D3 SNP Missense_Mutation 23 135309524 T A 60 49 BRCA TCGA-E2-A10C HTATSF1 SNP Missense_Mutation 23 135593186 G A 45 80 BRCA TCGA-E2-A10C GPR101 SNP Missense_Mutation 23 136112924 C T 31 44 BRCA TCGA-E2-A10C ABCD1 SNP Nonsense_Mutation 23 153001904 C T 29 63 BRCA TCGA-E2-A10C RAI2 SNP Missense_Mutation 23 17818567 G A 40 68 BRCA TCGA-E2-A10C MXRA5 SNP Silent 23 3242463 C A 29 45 BRCA TCGA-E2-A10C MXRA5 SNP Silent 23 3248697 G A 45 44 BRCA TCGA-E2-A10C CXorf30 SNP Missense_Mutation 23 36379490 C T 32 62 BRCA TCGA-E2-A10C GRIPAP1 SNP Missense_Mutation 23 48841752 C T 29 89 BRCA TCGA-E2-A10C IQSEC2 SNP Missense_Mutation 23 53267381 C T 31 93 BRCA TCGA-E2-A10C FAM123B SNP Missense_Mutation 23 63410170 C T 29 47 BRCA TCGA-E2-A10C GDPD2 SNP Nonsense_Mutation 23 69650936 C T 29 47 BRCA TCGA-E2-A10C UPRT SNP Silent 23 74517354 G A 33 54 BRCA TCGA-E2-A10C BRWD3 SNP Missense_Mutation 23 79932203 C T 29 86 BRCA TCGA-E2-A10C FANCD2 SNP Nonsense_Mutation 3 10107574 G T 41 97 BRCA TCGA-E2-A10C DZIP3 SNP Silent 3 108407718 C T 32 59 BRCA TCGA-E2-A10C LSAMP SNP Silent 3 115529227 G A 45 62 BRCA TCGA-E2-A10C CHST2 SNP Missense_Mutation 3 142840898 G A 45 72 BRCA TCGA-E2-A10C PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-E2-A10C SOX2 SNP Missense_Mutation 3 181430398 G A 41 98 BRCA TCGA-E2-A10C KAT2B SNP Silent 3 20167519 G T 45 57 BRCA TCGA-E2-A10C ZCWPW2 SNP Missense_Mutation 3 28562576 G A 41 49 BRCA TCGA-E2-A10C SCN10A SNP Missense_Mutation 3 38755529 C T 29 68 BRCA TCGA-E2-A10C FAM198A SNP Missense_Mutation 3 43095055 G C 45 77 BRCA TCGA-E2-A10C TDGF1 SNP Missense_Mutation 3 46620626 G A 41 55 BRCA TCGA-E2-A10C PTH1R SNP Missense_Mutation 3 46937242 G A 33 57 BRCA TCGA-E2-A10C KLHL18 SNP Silent 3 47385248 G A 41 62 BRCA TCGA-E2-A10C MST1 SNP Nonsense_Mutation 3 49724598 G C 45 62 BRCA TCGA-E2-A10C MST1R SNP Missense_Mutation 3 49933743 C T 31 48 BRCA TCGA-E2-A10C CADPS SNP Missense_Mutation 3 62543150 C G 32 68 BRCA TCGA-E2-A10C ALPK1 SNP Missense_Mutation 4 113351985 G C 33 98 BRCA TCGA-E2-A10C TRPC3 SNP Missense_Mutation 4 122825623 C T 29 100 BRCA TCGA-E2-A10C DDX60 SNP Missense_Mutation 4 169183193 C G 24 56 BRCA TCGA-E2-A10C WHSC1 SNP Missense_Mutation 4 1976719 G A 45 84 BRCA TCGA-E2-A10C FAM193A DEL Frame_Shift_Del 4 2659551 CGCATGTTAA - 27 79 BRCA TCGA-E2-A10C NOP14 SNP Missense_Mutation 4 2951877 C T 29 65 BRCA TCGA-E2-A10C TLR1 SNP Missense_Mutation 4 38798541 G T 45 76 BRCA TCGA-E2-A10C TECRL SNP Silent 4 65175565 T C 59 53 BRCA TCGA-E2-A10C EPGN SNP Silent 4 75174841 G A 45 53 BRCA TCGA-E2-A10C ANXA3 SNP Missense_Mutation 4 79522719 G C 45 64 BRCA TCGA-E2-A10C SH3TC1 SNP Missense_Mutation 4 8211477 G A 37 63 BRCA TCGA-E2-A10C CTNND2 SNP Missense_Mutation 5 11018106 G C 33 74 BRCA TCGA-E2-A10C TERT SNP Silent 5 1260685 G C 45 48 BRCA TCGA-E2-A10C FNIP1 SNP Missense_Mutation 5 130857085 G C 45 99 BRCA TCGA-E2-A10C SLC23A1 SNP Missense_Mutation 5 138717666 C T 31 98 BRCA TCGA-E2-A10C PCDHGB1 SNP Missense_Mutation 5 140730032 G A 33 69 BRCA TCGA-E2-A10C PCDHGB6 SNP Missense_Mutation 5 140790173 G C 45 66 BRCA TCGA-E2-A10C SLC36A2 SNP Missense_Mutation 5 150696593 C T 19 57 BRCA TCGA-E2-A10C UBLCP1 SNP Missense_Mutation 5 158697440 G A 45 76 BRCA TCGA-E2-A10C DROSHA SNP Missense_Mutation 5 31409170 G C 33 64 BRCA TCGA-E2-A10C PDZD2 SNP Missense_Mutation 5 32000267 G A 33 93 BRCA TCGA-E2-A10C C5orf42 SNP Missense_Mutation 5 37180152 C T 32 68 BRCA TCGA-E2-A10C LIFR SNP Nonsense_Mutation 5 38504178 G C 45 83 BRCA TCGA-E2-A10C DAB2 SNP Missense_Mutation 5 39375157 C G 32 63 BRCA TCGA-E2-A10C IQGAP2 SNP Silent 5 75906999 G A 33 53 BRCA TCGA-E2-A10C PDE8B SNP Silent 5 76700558 C T 29 52 BRCA TCGA-E2-A10C DSE SNP Missense_Mutation 6 116757151 C T 29 76 BRCA TCGA-E2-A10C RFX6 SNP Missense_Mutation 6 117232129 C T 29 85 BRCA TCGA-E2-A10C TAAR2 SNP Silent 6 132938838 C A 23 37 BRCA TCGA-E2-A10C FBXO30 SNP Missense_Mutation 6 146126650 C T 32 69 BRCA TCGA-E2-A10C STXBP5 SNP Missense_Mutation 6 147660341 G A 45 91 BRCA TCGA-E2-A10C MRPL18 SNP Missense_Mutation 6 160218324 G A 37 74 BRCA TCGA-E2-A10C PNLDC1 SNP Missense_Mutation 6 160240082 G C 33 56 BRCA TCGA-E2-A10C DACT2 SNP Missense_Mutation 6 168711061 C G 29 84 BRCA TCGA-E2-A10C LRRC16A SNP Missense_Mutation 6 25510753 C T 32 84 BRCA TCGA-E2-A10C HIST1H3B SNP Missense_Mutation 6 26032049 C G 32 85 BRCA TCGA-E2-A10C HIST1H2AB SNP Missense_Mutation 6 26033433 C G 29 95 BRCA TCGA-E2-A10C HIST1H1B SNP Silent 6 27834864 C A 31 33 BRCA TCGA-E2-A10C NOTCH4 SNP Silent 6 32190850 C G 30 51 BRCA TCGA-E2-A10C HLA-DMB SNP Splice_site 6 32904950 C G 30 73 BRCA TCGA-E2-A10C SLC39A7 SNP Silent 6 33169325 C G 32 54 BRCA TCGA-E2-A10C BAI3 SNP Missense_Mutation 6 69349121 G A 33 72 BRCA TCGA-E2-A10C IBTK SNP Missense_Mutation 6 82927697 C G 32 57 BRCA TCGA-E2-A10C NT5E SNP Missense_Mutation 6 86197154 C G 29 49 BRCA TCGA-E2-A10C THSD7A SNP Nonsense_Mutation 7 11676319 G A 45 100 BRCA TCGA-E2-A10C TAS2R16 SNP Silent 7 122635653 G A 45 51 BRCA TCGA-E2-A10C PLXNA4 SNP Silent 7 132193072 C G 29 53 BRCA TCGA-E2-A10C AKR1B15 SNP Missense_Mutation 7 134260625 C T 30 88 BRCA TCGA-E2-A10C NUP205 SNP Nonsense_Mutation 7 135261125 C T 17 100 BRCA TCGA-E2-A10C MGAM SNP Silent 7 141736724 C G 32 50 BRCA TCGA-E2-A10C OR2F1 SNP Nonsense_Mutation 7 143657556 C T 29 73 BRCA TCGA-E2-A10C OR2F1 SNP Silent 7 143657696 C T 32 54 BRCA TCGA-E2-A10C OR2F1 SNP Missense_Mutation 7 143657793 C G 29 97 BRCA TCGA-E2-A10C OR2A2 SNP Silent 7 143807338 C T 31 35 BRCA TCGA-E2-A10C TPK1 SNP Missense_Mutation 7 144320315 C T 29 79 BRCA TCGA-E2-A10C GIMAP2 SNP Missense_Mutation 7 150389612 G C 33 82 BRCA TCGA-E2-A10C AGAP3 SNP Missense_Mutation 7 150813883 C T 31 93 BRCA TCGA-E2-A10C IL6 SNP Silent 7 22769291 C T 24 52 BRCA TCGA-E2-A10C STK31 SNP Missense_Mutation 7 23766900 G A 33 88 BRCA TCGA-E2-A10C DFNA5 SNP Missense_Mutation 7 24749906 C G 32 60 BRCA TCGA-E2-A10C CBX3 SNP Missense_Mutation 7 26251371 G A 45 87 BRCA TCGA-E2-A10C HOXA13 SNP Missense_Mutation 7 27237824 G C 36 75 BRCA TCGA-E2-A10C CARD11 SNP Silent 7 2979488 C T 29 44 BRCA TCGA-E2-A10C NACAD SNP Missense_Mutation 7 45124506 C T 30 53 BRCA TCGA-E2-A10C FBXL18 SNP Missense_Mutation 7 5541259 G A 37 80 BRCA TCGA-E2-A10C TYW1B SNP Nonsense_Mutation 7 72040521 G A 45 88 BRCA TCGA-E2-A10C POM121 SNP Missense_Mutation 7 72414040 G A 45 59 BRCA TCGA-E2-A10C SRCRB4D SNP Silent 7 76023178 G C 45 45 BRCA TCGA-E2-A10C SAMD9 SNP Missense_Mutation 7 92732458 G A 45 79 BRCA TCGA-E2-A10C TRRAP SNP Missense_Mutation 7 98529178 G C 33 100 BRCA TCGA-E2-A10C ARPC1B SNP Missense_Mutation 7 98983370 C G 29 60 BRCA TCGA-E2-A10C PKHD1L1 SNP Splice_Site 8 110400725 G A 33 84 BRCA TCGA-E2-A10C MTBP SNP Missense_Mutation 8 121463465 G A 45 68 BRCA TCGA-E2-A10C CYP11B1 SNP Missense_Mutation 8 143957264 C T 29 89 BRCA TCGA-E2-A10C KIAA0146 SNP Nonsense_Mutation 8 48647973 C T 31 38 BRCA TCGA-E2-A10C TOX SNP Missense_Mutation 8 59750744 C A 29 100 BRCA TCGA-E2-A10C PRDM14 SNP Silent 8 70981480 G A 33 60 BRCA TCGA-E2-A10C CRISPLD1 SNP Silent 8 75898249 C T 29 72 BRCA TCGA-E2-A10C RALYL SNP Missense_Mutation 8 85799846 G T 33 63 BRCA TCGA-E2-A10C CNBD1 SNP Missense_Mutation 8 88249292 C G 29 33 BRCA TCGA-E2-A10C DCAF4L2 SNP Missense_Mutation 8 88886087 C T 32 44 BRCA TCGA-E2-A10C MMP16 SNP Missense_Mutation 8 89086949 C G 32 99 BRCA TCGA-E2-A10C C9orf174 SNP Missense_Mutation 9 100070026 C T 31 34 BRCA TCGA-E2-A10C DFNB31 SNP Missense_Mutation 9 117188600 T A 51 65 BRCA TCGA-E2-A10C RC3H2 SNP Missense_Mutation 9 125622277 G C 41 82 BRCA TCGA-E2-A10C GTF3C5 SNP Missense_Mutation 9 135933239 G C 33 64 BRCA TCGA-E2-A10C NOTCH1 SNP Missense_Mutation 9 139393424 G A 42 97 BRCA TCGA-E2-A10C ZBTB5 SNP Missense_Mutation 9 37441978 G A 45 75 BRCA TCGA-E2-A10C RASEF SNP Missense_Mutation 9 85624562 G A 36 79 BRCA TCGA-E2-A10C FAM120A SNP Nonsense_Mutation 9 96326563 C G 29 89 BRCA TCGA-E2-A10E CSF1 SNP Missense_Mutation 1 110466401 G C 33 64 BRCA TCGA-E2-A10E DDR2 SNP Missense_Mutation 1 162746132 G A 38 97 BRCA TCGA-E2-A10E RALGPS2 SNP Silent 1 178780488 A G 1 50 BRCA TCGA-E2-A10E NR5A2 SNP Missense_Mutation 1 200012952 C T 28 72 BRCA TCGA-E2-A10E MSRB2 SNP Silent 10 23393167 G A 39 35 BRCA TCGA-E2-A10E NRXN2 SNP Missense_Mutation 11 64435947 C T 19 80 BRCA TCGA-E2-A10E FREM2 SNP Missense_Mutation 13 39261792 G A 38 66 BRCA TCGA-E2-A10E MEX3C SNP Silent 18 48702727 G A 36 86 BRCA TCGA-E2-A10E ZCCHC2 SNP Missense_Mutation 18 60191460 T A 55 59 BRCA TCGA-E2-A10E GRIN2D SNP Missense_Mutation 19 48908478 G A 39 69 BRCA TCGA-E2-A10E MCOLN1 SNP Missense_Mutation 19 7591479 A T 8 58 BRCA TCGA-E2-A10E ITGA6 DEL In_Frame_Del 2 173356028 GCTCGAGGTTAT - 38 71 BRCA TCGA-E2-A10E TTN SNP Missense_Mutation 2 179650417 C T 27 70 BRCA TCGA-E2-A10E USP40 SNP Splice_Site 2 234428319 T C 53 75 BRCA TCGA-E2-A10E OTOF SNP Missense_Mutation 2 26688892 G A 42 67 BRCA TCGA-E2-A10E PLS3 SNP Missense_Mutation 23 114883857 G A 47 97 BRCA TCGA-E2-A10E PIGA SNP Missense_Mutation 23 15339870 C T 28 62 BRCA TCGA-E2-A10E NHSL2 SNP Missense_Mutation 23 71359229 C T 29 56 BRCA TCGA-E2-A10E PCDHGA1 SNP Missense_Mutation 5 140711179 G A 37 95 BRCA TCGA-E2-A10E BTNL8 SNP Missense_Mutation 5 180376957 C A 32 52 BRCA TCGA-E2-A10E MAST4 SNP Missense_Mutation 5 66459337 G A 40 100 BRCA TCGA-E2-A10E C5orf49 SNP Missense_Mutation 5 7832054 C G 26 58 BRCA TCGA-E2-A10E LOC100289162 SNP Silent 6 160555269 C T 32 49 BRCA TCGA-E2-A10E PAXIP1 SNP Missense_Mutation 7 154752763 T A 56 50 BRCA TCGA-E2-A10E COLEC10 SNP Splice_site 8 120103458 G C 35 57 BRCA TCGA-E2-A10E TG SNP Nonsense_Mutation 8 133948004 C T 19 57 BRCA TCGA-E2-A10E C9orf114 SNP Silent 9 131587072 G A 39 31 BRCA TCGA-E2-A10F CD1B SNP Missense_Mutation 1 158299878 G C 33 47 BRCA TCGA-E2-A10F RAP1GAP SNP Silent 1 21936700 G A 37 50 BRCA TCGA-E2-A10F RLF SNP Missense_Mutation 1 40705088 C T 19 75 BRCA TCGA-E2-A10F KLHL21 SNP Missense_Mutation 1 6659504 C T 31 97 BRCA TCGA-E2-A10F REEP3 SNP Silent 10 65380602 G T 45 69 BRCA TCGA-E2-A10F GLB1L3 SNP Silent 11 134179638 G A 39 25 BRCA TCGA-E2-A10F ODZ4 SNP Missense_Mutation 11 78775887 C T 19 85 BRCA TCGA-E2-A10F CAND1 SNP Silent 12 67696173 G A 47 86 BRCA TCGA-E2-A10F CDH1 INS Frame_Shift_Ins 16 68845685 - T 28 37 BRCA TCGA-E2-A10F SUPT6H SNP Missense_Mutation 17 27014157 C T 23 76 BRCA TCGA-E2-A10F ATP8B3 SNP Missense_Mutation 19 1802626 G A 38 59 BRCA TCGA-E2-A10F ZNF99 SNP Missense_Mutation 19 22940742 C A 28 50 BRCA TCGA-E2-A10F SF3B1 SNP Missense_Mutation 2 198266493 A T 8 61 BRCA TCGA-E2-A10F PLCL1 SNP Missense_Mutation 2 198949560 G A 37 100 BRCA TCGA-E2-A10F EFR3B SNP Missense_Mutation 2 25358396 C T 23 80 BRCA TCGA-E2-A10F PHACTR3 SNP Silent 20 58342410 G A 38 37 BRCA TCGA-E2-A10F NRK SNP Nonsense_Mutation 23 105152945 C T 19 56 BRCA TCGA-E2-A10F FLNA SNP Silent 23 153599398 G A 38 83 BRCA TCGA-E2-A10F STAG1 SNP Nonsense_Mutation 3 136088052 G A 45 85 BRCA TCGA-E2-A10F PIK3CA SNP Missense_Mutation 3 178938934 G A 45 98 BRCA TCGA-E2-A10F PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A10F CSRNP1 SNP Missense_Mutation 3 39185716 C T 27 100 BRCA TCGA-E2-A10F CELSR3 SNP Silent 3 48694417 T C 57 54 BRCA TCGA-E2-A10F PCDHB7 SNP Missense_Mutation 5 140553401 G A 47 61 BRCA TCGA-E2-A10F MARVELD2 SNP Missense_Mutation 5 68728474 A G 13 88 BRCA TCGA-E2-A10F ETV7 SNP Missense_Mutation 6 36334453 A G 9 64 BRCA TCGA-E2-A10F CCIN SNP Missense_Mutation 9 36169514 C A 29 66 BRCA TCGA-E2-A14N CTSS SNP Missense_Mutation 1 150722597 C A 20 54 BRCA TCGA-E2-A14N PIP5K1A SNP Silent 1 151209081 C T 30 69 BRCA TCGA-E2-A14N SPRR3 SNP Silent 1 152975898 T G 55 54 BRCA TCGA-E2-A14N CSMD2 SNP Missense_Mutation 1 34554791 T C 55 77 BRCA TCGA-E2-A14N RIMKLA SNP Missense_Mutation 1 42875811 T C 51 85 BRCA TCGA-E2-A14N SLC5A9 SNP Missense_Mutation 1 48699331 G A 35 51 BRCA TCGA-E2-A14N PLEKHN1 SNP Missense_Mutation 1 906108 G T 43 54 BRCA TCGA-E2-A14N CCDC3 SNP Silent 10 13043199 G A 45 60 BRCA TCGA-E2-A14N THNSL1 SNP Nonsense_Mutation 10 25313398 C T 29 98 BRCA TCGA-E2-A14N ABI1 SNP Missense_Mutation 10 27052815 C A 17 54 BRCA TCGA-E2-A14N PTCHD3 SNP Splice_site 10 27700858 C A 18 58 BRCA TCGA-E2-A14N CUL5 SNP Silent 11 107965573 C T 27 53 BRCA TCGA-E2-A14N MRGPRX3 SNP Missense_Mutation 11 18159472 G T 41 58 BRCA TCGA-E2-A14N GANAB SNP Missense_Mutation 11 62400200 C G 27 95 BRCA TCGA-E2-A14N RNF10 SNP Missense_Mutation 12 120995476 C T 29 67 BRCA TCGA-E2-A14N ATP11A SNP Splice_Site 13 113488902 G C 33 99 BRCA TCGA-E2-A14N F7 SNP Silent 13 113771885 C T 20 49 BRCA TCGA-E2-A14N FAM124A SNP Silent 13 51854669 G A 37 24 BRCA TCGA-E2-A14N RTL1 SNP Missense_Mutation 14 101350779 C T 30 50 BRCA TCGA-E2-A14N PROX2 SNP Missense_Mutation 14 75329577 T A 58 56 BRCA TCGA-E2-A14N MYO9A SNP Missense_Mutation 15 72338876 C T 27 98 BRCA TCGA-E2-A14N IL27 SNP Missense_Mutation 16 28511052 C G 19 51 BRCA TCGA-E2-A14N LOC732391 SNP Missense_Mutation 17 15469101 G A 40 48 BRCA TCGA-E2-A14N BZRAP1 SNP Missense_Mutation 17 56384995 A C 3 89 BRCA TCGA-E2-A14N ACOX1 SNP Missense_Mutation 17 73956312 C G 32 71 BRCA TCGA-E2-A14N TP53 SNP Nonsense_Mutation 17 7578263 G A 39 67 BRCA TCGA-E2-A14N ZNF625 SNP Missense_Mutation 19 12256170 G C 36 53 BRCA TCGA-E2-A14N FAM108A1 SNP Missense_Mutation 19 1877565 C A 22 81 BRCA TCGA-E2-A14N PRODH2 SNP Missense_Mutation 19 36303679 G C 41 71 BRCA TCGA-E2-A14N NUMBL SNP Missense_Mutation 19 41173774 C A 20 61 BRCA TCGA-E2-A14N RANBP3 SNP Silent 19 5917932 C T 25 57 BRCA TCGA-E2-A14N LPPR3 SNP Silent 19 815750 G A 33 51 BRCA TCGA-E2-A14N FAM171B SNP Missense_Mutation 2 187626606 A T 11 50 BRCA TCGA-E2-A14N XPO1 SNP Silent 2 61710129 A G 16 77 BRCA TCGA-E2-A14N CEP68 SNP Missense_Mutation 2 65298808 C T 24 52 BRCA TCGA-E2-A14N TRABD2A SNP Missense_Mutation 2 85097456 A C 3 56 BRCA TCGA-E2-A14N FER1L5 SNP Missense_Mutation 2 97357535 C T 26 51 BRCA TCGA-E2-A14N CDK5RAP1 SNP Missense_Mutation 20 31961928 G A 38 58 BRCA TCGA-E2-A14N ATRN SNP Splice_site 20 3527932 T A 64 55 BRCA TCGA-E2-A14N PCMTD2 SNP Missense_Mutation 20 62899355 T C 58 76 BRCA TCGA-E2-A14N MYO18B SNP Silent 22 26423470 A T 8 38 BRCA TCGA-E2-A14N MID2 SNP Missense_Mutation 23 107170052 C G 27 79 BRCA TCGA-E2-A14N ZRSR2 DEL In_Frame_Del 23 15841195 AGGGACCGCAGC - 15 62 BRCA TCGA-E2-A14N GYG2 SNP Missense_Mutation 23 2774660 C G 29 64 BRCA TCGA-E2-A14N ATG7 SNP Missense_Mutation 3 11383698 A G 1 65 BRCA TCGA-E2-A14N TTC29 SNP Missense_Mutation 4 147724636 C G 24 61 BRCA TCGA-E2-A14N UGT2A1 SNP Missense_Mutation 4 70455314 G T 42 72 BRCA TCGA-E2-A14N HPSE SNP Missense_Mutation 4 84234382 A T 5 54 BRCA TCGA-E2-A14N KDM3B SNP Missense_Mutation 5 137771360 G A 42 100 BRCA TCGA-E2-A14N CCDC69 SNP Splice_Site 5 150566946 C A 18 73 BRCA TCGA-E2-A14N SYCP2L SNP Nonsense_Mutation 6 10935310 C A 29 46 BRCA TCGA-E2-A14N RSPH3 SNP Missense_Mutation 6 159401878 G C 35 70 BRCA TCGA-E2-A14N SSR1 SNP Missense_Mutation 6 7301667 A G 3 92 BRCA TCGA-E2-A14N MGAM SNP Missense_Mutation 7 141705436 A G 5 51 BRCA TCGA-E2-A14N HTR5A SNP Missense_Mutation 7 154862779 G T 47 97 BRCA TCGA-E2-A14N AKAP9 SNP Missense_Mutation 7 91632139 C G 17 69 BRCA TCGA-E2-A14N SAMD9 SNP Silent 7 92733023 G T 41 50 BRCA TCGA-E2-A14N SH3GL2 SNP Missense_Mutation 9 17795652 G A 45 100 BRCA TCGA-E2-A14N MLLT3 SNP Missense_Mutation 9 20620668 G A 41 100 BRCA TCGA-E2-A14N PTCH1 SNP Missense_Mutation 9 98221930 C G 32 96 BRCA TCGA-E2-A14O CFHR3 SNP Silent 1 196757392 C T 23 55 BRCA TCGA-E2-A14O OR2T2 SNP Missense_Mutation 1 248616513 C T 23 46 BRCA TCGA-E2-A14O C1orf185 SNP Missense_Mutation 1 51584393 C T 18 50 BRCA TCGA-E2-A14O SEMA4G SNP Missense_Mutation 10 102732993 T G 54 66 BRCA TCGA-E2-A14O DHX32 SNP Missense_Mutation 10 127530353 T G 58 85 BRCA TCGA-E2-A14O MLLT10 SNP Missense_Mutation 10 21959565 G A 35 90 BRCA TCGA-E2-A14O SYT12 SNP Missense_Mutation 11 66811295 G T 47 67 BRCA TCGA-E2-A14O PITPNM1 SNP Missense_Mutation 11 67269453 C T 29 90 BRCA TCGA-E2-A14O SPRYD4 SNP Missense_Mutation 12 56862936 A C 9 90 BRCA TCGA-E2-A14O EIF5 SNP Missense_Mutation 14 103802230 C G 18 73 BRCA TCGA-E2-A14O BTBD6 SNP Silent 14 105716214 C T 23 19 BRCA TCGA-E2-A14O ARHGAP11A SNP Missense_Mutation 15 32929250 C A 28 63 BRCA TCGA-E2-A14O TBL3 SNP Missense_Mutation 16 2027601 G A 43 99 BRCA TCGA-E2-A14O ARMC5 SNP Missense_Mutation 16 31474228 C T 23 59 BRCA TCGA-E2-A14O GLYR1 DEL In_Frame_Del 16 4862120 AGC - 3 89 BRCA TCGA-E2-A14O FLII SNP Missense_Mutation 17 18149307 C T 31 96 BRCA TCGA-E2-A14O COL1A1 SNP Missense_Mutation 17 48267939 C T 23 82 BRCA TCGA-E2-A14O TANC2 SNP Missense_Mutation 17 61498828 A G 2 63 BRCA TCGA-E2-A14O DAZAP1 SNP Silent 19 1418354 G T 38 41 BRCA TCGA-E2-A14O EMR2 SNP Missense_Mutation 19 14866468 G A 39 55 BRCA TCGA-E2-A14O RASAL3 SNP Missense_Mutation 19 15565621 C T 31 81 BRCA TCGA-E2-A14O RFX2 SNP Missense_Mutation 19 6040046 C A 22 68 BRCA TCGA-E2-A14O TRIP10 SNP Missense_Mutation 19 6750615 G T 44 90 BRCA TCGA-E2-A14O SGSM1 SNP Missense_Mutation 22 25315810 G A 40 100 BRCA TCGA-E2-A14O IRAK1 SNP Silent 23 153284685 C A 30 59 BRCA TCGA-E2-A14O PJA1 SNP Nonsense_Mutation 23 68382547 G A 38 47 BRCA TCGA-E2-A14O FXYD8 SNP Missense_Mutation 23 73094954 G T 42 55 BRCA TCGA-E2-A14O PLXND1 SNP Missense_Mutation 3 129289712 C T 31 74 BRCA TCGA-E2-A14O NKTR SNP Missense_Mutation 3 42659115 A G 1 89 BRCA TCGA-E2-A14O PCDH7 SNP Missense_Mutation 4 30725334 G T 34 73 BRCA TCGA-E2-A14O LATS1 SNP Nonsense_Mutation 6 150001395 G A 37 77 BRCA TCGA-E2-A14O PLXNA4 SNP Missense_Mutation 7 131908302 C T 31 100 BRCA TCGA-E2-A14O SDK1 SNP Missense_Mutation 7 4008969 G A 40 68 BRCA TCGA-E2-A14O ERVW-1 SNP Missense_Mutation 7 92098206 A T 12 51 BRCA TCGA-E2-A14O STMN4 SNP Missense_Mutation 8 27098633 G A 38 56 BRCA TCGA-E2-A14O ZNF705G SNP Nonsense_Mutation 8 7217792 C A 30 56 BRCA TCGA-E2-A14O ASTN2 SNP Missense_Mutation 9 119188282 C T 19 79 BRCA TCGA-E2-A14P TMOD4 SNP Missense_Mutation 1 151146968 G A 40 99 BRCA TCGA-E2-A14P ARHGEF2 SNP Silent 1 155922540 G A 41 64 BRCA TCGA-E2-A14P IKBKE SNP Silent 1 206649567 C T 27 21 BRCA TCGA-E2-A14P HP1BP3 SNP Silent 1 21076220 A G 12 48 BRCA TCGA-E2-A14P HSPG2 SNP Missense_Mutation 1 22156504 C A 22 88 BRCA TCGA-E2-A14P BROX SNP Missense_Mutation 1 222903003 A T 4 49 BRCA TCGA-E2-A14P KMO SNP Missense_Mutation 1 241750005 G C 45 92 BRCA TCGA-E2-A14P UBXN11 SNP Missense_Mutation 1 26608929 G A 39 52 BRCA TCGA-E2-A14P STIL SNP Silent 1 47728698 C T 32 53 BRCA TCGA-E2-A14P SLC5A9 SNP Missense_Mutation 1 48696327 A G 14 90 BRCA TCGA-E2-A14P HFM1 SNP Missense_Mutation 1 91859834 G C 33 55 BRCA TCGA-E2-A14P JAKMIP3 SNP Silent 10 133967268 C T 30 44 BRCA TCGA-E2-A14P OR8J1 SNP Silent 11 56127893 C A 22 46 BRCA TCGA-E2-A14P MRGPRD SNP Silent 11 68748273 G A 33 73 BRCA TCGA-E2-A14P ABCC9 SNP Silent 12 22025600 G A 37 35 BRCA TCGA-E2-A14P DBX2 SNP Missense_Mutation 12 45444337 C T 31 51 BRCA TCGA-E2-A14P C12orf44 SNP Missense_Mutation 12 52470890 G T 33 59 BRCA TCGA-E2-A14P ANO2 SNP Silent 12 5848498 G T 46 34 BRCA TCGA-E2-A14P LOC643677 SNP Missense_Mutation 13 103391205 C T 32 47 BRCA TCGA-E2-A14P OR4K2 SNP Silent 14 20344474 G T 42 52 BRCA TCGA-E2-A14P PRMT5 SNP Missense_Mutation 14 23397820 C G 29 94 BRCA TCGA-E2-A14P YLPM1 SNP Missense_Mutation 14 75248571 T C 50 51 BRCA TCGA-E2-A14P WDR76 SNP Silent 15 44119242 G T 39 28 BRCA TCGA-E2-A14P SMPD3 SNP Missense_Mutation 16 68404767 G T 33 66 BRCA TCGA-E2-A14P SPAG5 SNP Missense_Mutation 17 26905084 G A 37 59 BRCA TCGA-E2-A14P SLC35G3 SNP Silent 17 33520478 G A 38 72 BRCA TCGA-E2-A14P BRIP1 DEL Splice_site 17 59861632 TGCTATTTT - 55 73 BRCA TCGA-E2-A14P CD300E SNP Silent 17 72613390 G A 37 54 BRCA TCGA-E2-A14P TP53 SNP Missense_Mutation 17 7578461 C A 19 51 BRCA TCGA-E2-A14P PIEZO2 SNP Missense_Mutation 18 10696087 G A 35 97 BRCA TCGA-E2-A14P KIAA1328 SNP Missense_Mutation 18 34465536 G A 41 94 BRCA TCGA-E2-A14P PIAS2 SNP Missense_Mutation 18 44400931 T C 51 84 BRCA TCGA-E2-A14P PTPRM SNP Missense_Mutation 18 8387170 G A 38 76 BRCA TCGA-E2-A14P HNRNPL SNP Nonsense_Mutation 19 39329199 G T 40 49 BRCA TCGA-E2-A14P BRSK1 SNP Missense_Mutation 19 55820015 C T 23 73 BRCA TCGA-E2-A14P ERCC3 SNP Missense_Mutation 2 128046289 C T 31 100 BRCA TCGA-E2-A14P IWS1 SNP Missense_Mutation 2 128260411 C T 29 89 BRCA TCGA-E2-A14P POTEF DEL Frame_Shift_Del 2 130868152 GTCT - 40 49 BRCA TCGA-E2-A14P LRP2 SNP Missense_Mutation 2 170003332 C T 31 79 BRCA TCGA-E2-A14P TTN SNP Missense_Mutation 2 179456809 A C 7 94 BRCA TCGA-E2-A14P TTN SNP Silent 2 179476280 A G 10 55 BRCA TCGA-E2-A14P KCNS3 SNP Missense_Mutation 2 18112646 G A 38 63 BRCA TCGA-E2-A14P ZDBF2 SNP Silent 2 207175720 C T 29 63 BRCA TCGA-E2-A14P FAM124B SNP Missense_Mutation 2 225266233 C T 19 56 BRCA TCGA-E2-A14P NMUR1 SNP Missense_Mutation 2 232392911 G A 33 57 BRCA TCGA-E2-A14P OXER1 SNP Missense_Mutation 2 42990664 C T 26 50 BRCA TCGA-E2-A14P RNF103 SNP Silent 2 86831287 G A 47 81 BRCA TCGA-E2-A14P DDRGK1 SNP Missense_Mutation 20 3184039 C T 29 75 BRCA TCGA-E2-A14P CENPB SNP Missense_Mutation 20 3765588 C T 29 75 BRCA TCGA-E2-A14P PABPC1L SNP Missense_Mutation 20 43538932 C T 27 74 BRCA TCGA-E2-A14P CDH4 SNP Missense_Mutation 20 59829897 C G 32 81 BRCA TCGA-E2-A14P ELFN2 SNP Missense_Mutation 22 37771355 A G 11 78 BRCA TCGA-E2-A14P HNRNPH2 SNP Missense_Mutation 23 100668219 C A 25 58 BRCA TCGA-E2-A14P FAM47C SNP Missense_Mutation 23 37028635 C T 26 46 BRCA TCGA-E2-A14P EEFSEC SNP Silent 3 127983621 C A 29 57 BRCA TCGA-E2-A14P IFT122 SNP Silent 3 129200411 C G 30 65 BRCA TCGA-E2-A14P ABCC5 SNP Missense_Mutation 3 183669317 G C 41 59 BRCA TCGA-E2-A14P EIF2B5 SNP Missense_Mutation 3 183855975 G A 45 86 BRCA TCGA-E2-A14P TBC1D9 SNP Silent 4 141578724 A G 2 65 BRCA TCGA-E2-A14P MFAP3L SNP Missense_Mutation 4 170912621 C T 32 69 BRCA TCGA-E2-A14P LOC100288105 SNP Silent 5 140242934 G A 37 49 BRCA TCGA-E2-A14P PCDHGA2 SNP Missense_Mutation 5 140720243 A G 6 74 BRCA TCGA-E2-A14P C5orf45 SNP Missense_Mutation 5 179267940 C T 19 56 BRCA TCGA-E2-A14P IYD SNP Silent 6 150715289 C T 29 58 BRCA TCGA-E2-A14P VIP SNP Missense_Mutation 6 153077328 A T 10 91 BRCA TCGA-E2-A14P MAS1L SNP Silent 6 29454744 G A 45 58 BRCA TCGA-E2-A14P MAS1L SNP Silent 6 29455332 G A 37 35 BRCA TCGA-E2-A14P LTA SNP Missense_Mutation 6 31541102 G A 41 75 BRCA TCGA-E2-A14P DUSP22 SNP Silent 6 348862 C T 27 58 BRCA TCGA-E2-A14P ACTL6B SNP Silent 7 100244881 G A 39 40 BRCA TCGA-E2-A14P PLXNA4 SNP Missense_Mutation 7 131982906 G A 39 52 BRCA TCGA-E2-A14P BBS9 SNP Missense_Mutation 7 33407456 C T 32 89 BRCA TCGA-E2-A14P NPSR1 SNP Missense_Mutation 7 34724283 G T 34 54 BRCA TCGA-E2-A14P GLI3 SNP Missense_Mutation 7 42064883 G A 43 98 BRCA TCGA-E2-A14P ZDHHC4 SNP Missense_Mutation 7 6621256 C G 30 74 BRCA TCGA-E2-A14P MCM7 SNP Nonsense_Mutation 7 99695338 G T 45 94 BRCA TCGA-E2-A14P UBR5 SNP Missense_Mutation 8 103284901 C T 20 87 BRCA TCGA-E2-A14P MBOAT4 SNP Nonsense_Mutation 8 29989859 G C 45 90 BRCA TCGA-E2-A14P RNF170 SNP Silent 8 42711536 C T 29 72 BRCA TCGA-E2-A14P ADAMTS13 SNP Missense_Mutation 9 136314932 G A 40 57 BRCA TCGA-E2-A14P EHMT1 SNP Missense_Mutation 9 140729293 A G 3 89 BRCA TCGA-E2-A14P FAM205A SNP Silent 9 34723403 A G 10 40 BRCA TCGA-E2-A14P ZCCHC6 SNP Splice_Site 9 88920155 C T 32 96 BRCA TCGA-E2-A14Q ATP1A4 SNP Missense_Mutation 1 160147410 G C 33 55 BRCA TCGA-E2-A14Q CFHR2 SNP Missense_Mutation 1 196918689 T C 55 56 BRCA TCGA-E2-A14Q RYR2 SNP Missense_Mutation 1 237881772 A G 11 92 BRCA TCGA-E2-A14Q STK32C SNP Silent 10 134036380 C T 23 20 BRCA TCGA-E2-A14Q LOC100287896 SNP Missense_Mutation 11 74209012 G A 45 51 BRCA TCGA-E2-A14Q CLIP1 SNP Silent 12 122825972 G A 39 9 BRCA TCGA-E2-A14Q MYF6 SNP Missense_Mutation 12 81101884 C T 22 100 BRCA TCGA-E2-A14Q PSMC6 SNP Splice_site 14 53173897 T C 51 69 BRCA TCGA-E2-A14Q POMT2 SNP Silent 14 77757676 C T 32 73 BRCA TCGA-E2-A14Q EML5 DEL Frame_Shift_Del 14 89094085 C - 30 97 BRCA TCGA-E2-A14Q CCDC102A SNP Missense_Mutation 16 57550287 A C 6 72 BRCA TCGA-E2-A14Q KIAA0664 SNP Missense_Mutation 17 2598235 G A 48 84 BRCA TCGA-E2-A14Q RGS9 SNP Missense_Mutation 17 63221255 C T 23 49 BRCA TCGA-E2-A14Q RYR1 SNP Silent 19 38973696 C T 23 31 BRCA TCGA-E2-A14Q IL28B SNP Missense_Mutation 19 39735556 C T 19 46 BRCA TCGA-E2-A14Q IL1RL2 SNP Missense_Mutation 2 102818091 G A 41 74 BRCA TCGA-E2-A14Q LRP1B SNP Missense_Mutation 2 141598583 G A 40 85 BRCA TCGA-E2-A14Q ZHX3 SNP Missense_Mutation 20 39832443 G A 39 54 BRCA TCGA-E2-A14Q LAMB2 SNP Missense_Mutation 3 49167413 G A 37 60 BRCA TCGA-E2-A14Q PCDHB14 SNP Silent 5 140605357 G C 41 49 BRCA TCGA-E2-A14Q PCDHGB1 SNP Silent 5 140731438 G A 38 45 BRCA TCGA-E2-A14Q PIK3R1 DEL In_Frame_Del 5 67591130 AAGACGAGAGACCAATACTTG - 1 90 BRCA TCGA-E2-A14Q KIFC1 SNP Missense_Mutation 6 33371608 G T 46 46 BRCA TCGA-E2-A14Q USP49 SNP Silent 6 41773690 G A 45 60 BRCA TCGA-E2-A14Q RBAK SNP Missense_Mutation 7 5103484 A G 4 49 BRCA TCGA-E2-A14Q USP42 SNP Missense_Mutation 7 6155014 T G 56 93 BRCA TCGA-E2-A14Q RIMS2 SNP Missense_Mutation 8 104924348 G A 40 100 BRCA TCGA-E2-A14Q FAM86B1 SNP Missense_Mutation 8 12044059 G A 39 51 BRCA TCGA-E2-A14Q RAD54B SNP Missense_Mutation 8 95392443 C A 30 99 BRCA TCGA-E2-A14Q CORO2A SNP Missense_Mutation 9 100887118 C T 18 93 BRCA TCGA-E2-A14R PRPF38B DEL Frame_Shift_Del 1 109238924 TGGGACTGGTTTGAATCCTTCCTTGATGA - 59 78 BRCA TCGA-E2-A14R KCND3 SNP Silent 1 112524764 G A 33 50 BRCA TCGA-E2-A14R CCNL2 SNP Splice_Site 1 1328842 T C 55 87 BRCA TCGA-E2-A14R NBPF12 INS Frame_Shift_Ins 1 146408106 - A 29 45 BRCA TCGA-E2-A14R PRUNE SNP Silent 1 151006389 T C 54 51 BRCA TCGA-E2-A14R LCE2B SNP Missense_Mutation 1 152659424 G T 36 64 BRCA TCGA-E2-A14R NES SNP Silent 1 156640029 T C 54 58 BRCA TCGA-E2-A14R CASQ1 SNP Silent 1 160167383 G A 39 36 BRCA TCGA-E2-A14R NME7 SNP Missense_Mutation 1 169292459 T G 56 56 BRCA TCGA-E2-A14R CROCC SNP Nonsense_Mutation 1 17266458 G T 37 84 BRCA TCGA-E2-A14R SEC16B SNP Missense_Mutation 1 177917055 C G 30 97 BRCA TCGA-E2-A14R FCAMR SNP Missense_Mutation 1 207132061 G A 35 51 BRCA TCGA-E2-A14R PLXNA2 SNP Silent 1 208257821 C T 28 72 BRCA TCGA-E2-A14R OBSCN SNP Missense_Mutation 1 228506947 G A 42 53 BRCA TCGA-E2-A14R OBSCN SNP Missense_Mutation 1 228509882 G A 33 60 BRCA TCGA-E2-A14R GPR137B SNP Missense_Mutation 1 236341802 T C 63 55 BRCA TCGA-E2-A14R ZNF642 SNP Missense_Mutation 1 40945155 G C 41 57 BRCA TCGA-E2-A14R ZZZ3 SNP Missense_Mutation 1 78099029 G A 41 85 BRCA TCGA-E2-A14R GBF1 SNP Missense_Mutation 10 104128052 G T 37 100 BRCA TCGA-E2-A14R TDRD1 SNP Silent 10 115986919 G C 45 53 BRCA TCGA-E2-A14R NEBL SNP Silent 10 21097581 C A 31 44 BRCA TCGA-E2-A14R PFKP SNP Missense_Mutation 10 3178021 C T 19 98 BRCA TCGA-E2-A14R HNRNPF SNP Missense_Mutation 10 43883017 C T 31 68 BRCA TCGA-E2-A14R C10orf71 SNP Missense_Mutation 10 50532560 G T 41 51 BRCA TCGA-E2-A14R FAM190B SNP Missense_Mutation 10 86198279 A T 16 77 BRCA TCGA-E2-A14R MUC2 SNP Missense_Mutation 11 1101932 C A 29 62 BRCA TCGA-E2-A14R DKK3 SNP Missense_Mutation 11 12023920 C T 28 49 BRCA TCGA-E2-A14R KRTAP5-4 SNP Missense_Mutation 11 1643059 C A 22 75 BRCA TCGA-E2-A14R EIF3M SNP Missense_Mutation 11 32608625 G C 41 97 BRCA TCGA-E2-A14R FOLH1 SNP Silent 11 49190796 G A 41 56 BRCA TCGA-E2-A14R RASGRP2 SNP Missense_Mutation 11 64503109 G A 44 70 BRCA TCGA-E2-A14R MRPL49 SNP Missense_Mutation 11 64889852 G C 43 41 BRCA TCGA-E2-A14R RBM14 SNP Missense_Mutation 11 66391939 T C 56 58 BRCA TCGA-E2-A14R ENSG00000204455 SNP Missense_Mutation 11 89595597 C A 29 58 BRCA TCGA-E2-A14R UTP20 SNP Missense_Mutation 12 101723085 G T 44 100 BRCA TCGA-E2-A14R WDR66 SNP Missense_Mutation 12 122396206 G A 38 48 BRCA TCGA-E2-A14R GALNT9 SNP Missense_Mutation 12 132862937 G C 40 57 BRCA TCGA-E2-A14R DENND5B SNP Missense_Mutation 12 31551140 C G 29 48 BRCA TCGA-E2-A14R SUGT1 SNP Splice_site 13 53241054 G C 35 90 BRCA TCGA-E2-A14R MBNL2 SNP Missense_Mutation 13 97928584 A C 9 80 BRCA TCGA-E2-A14R PSMB11 SNP Silent 14 23511785 G T 45 51 BRCA TCGA-E2-A14R SGPP1 SNP Missense_Mutation 14 64153112 G C 33 99 BRCA TCGA-E2-A14R SNAP23 SNP Missense_Mutation 15 42805156 C G 32 80 BRCA TCGA-E2-A14R TP53BP1 SNP Missense_Mutation 15 43767790 C T 24 56 BRCA TCGA-E2-A14R HOMER2 SNP Missense_Mutation 15 83523466 G T 46 72 BRCA TCGA-E2-A14R NTRK3 SNP Missense_Mutation 15 88678619 C G 19 65 BRCA TCGA-E2-A14R VWA3A SNP Missense_Mutation 16 22161158 T G 55 76 BRCA TCGA-E2-A14R LAT SNP Missense_Mutation 16 28997485 C A 22 59 BRCA TCGA-E2-A14R SRCAP SNP Missense_Mutation 16 30733960 G C 35 68 BRCA TCGA-E2-A14R CDH11 SNP Missense_Mutation 16 65025783 G C 40 42 BRCA TCGA-E2-A14R FTSJD1 SNP Missense_Mutation 16 71319781 G C 41 56 BRCA TCGA-E2-A14R STAT5A SNP Missense_Mutation 17 40460235 G A 39 65 BRCA TCGA-E2-A14R SDK2 SNP Missense_Mutation 17 71426721 A T 12 72 BRCA TCGA-E2-A14R TP53 SNP Missense_Mutation 17 7578265 A G 12 68 BRCA TCGA-E2-A14R GREB1L SNP Nonsense_Mutation 18 19020262 C T 19 61 BRCA TCGA-E2-A14R CHST9 SNP Missense_Mutation 18 24496887 C G 26 89 BRCA TCGA-E2-A14R C19orf25 SNP Missense_Mutation 19 1478671 G C 44 49 BRCA TCGA-E2-A14R SYMPK SNP Missense_Mutation 19 46321248 A T 8 87 BRCA TCGA-E2-A14R SIGLEC9 SNP Silent 19 51631731 A T 15 50 BRCA TCGA-E2-A14R CD33 SNP Missense_Mutation 19 51728821 T C 61 63 BRCA TCGA-E2-A14R ZNF665 SNP Missense_Mutation 19 53668116 T G 63 43 BRCA TCGA-E2-A14R NEB SNP Missense_Mutation 2 152527544 A T 15 78 BRCA TCGA-E2-A14R CRIM1 DEL In_Frame_Del 2 36623768 ACTGATGACCAACTGCTTGGTTTT - 10 74 BRCA TCGA-E2-A14R USP34 SNP Splice_Site 2 61505421 C A 20 98 BRCA TCGA-E2-A14R ADRA2B SNP Missense_Mutation 2 96780849 C T 18 51 BRCA TCGA-E2-A14R GGTLC1 SNP Silent 20 23966412 G T 45 58 BRCA TCGA-E2-A14R VSX1 SNP Missense_Mutation 20 25060118 G C 35 58 BRCA TCGA-E2-A14R SOGA1 SNP Missense_Mutation 20 35406195 C A 28 50 BRCA TCGA-E2-A14R FAM65C SNP Missense_Mutation 20 49208955 C G 23 83 BRCA TCGA-E2-A14R ITGB2 SNP Missense_Mutation 21 46309979 A T 10 51 BRCA TCGA-E2-A14R COL18A1 SNP Missense_Mutation 21 46897375 C T 23 45 BRCA TCGA-E2-A14R UPB1 SNP Splice_Site 22 24909455 T A 59 77 BRCA TCGA-E2-A14R RBMXL3 SNP Missense_Mutation 23 114425862 T C 55 35 BRCA TCGA-E2-A14R GRIA3 SNP Missense_Mutation 23 122538638 T C 53 89 BRCA TCGA-E2-A14R BCORL1 SNP Missense_Mutation 23 129147782 C T 19 61 BRCA TCGA-E2-A14R MAGEB4 SNP Missense_Mutation 23 30260876 C G 32 47 BRCA TCGA-E2-A14R CACNA1F SNP Missense_Mutation 23 49076144 A G 6 86 BRCA TCGA-E2-A14R ITIH6 SNP Missense_Mutation 23 54780124 G T 44 39 BRCA TCGA-E2-A14R TEX11 SNP Missense_Mutation 23 70073144 G A 34 49 BRCA TCGA-E2-A14R CYSLTR1 SNP Missense_Mutation 23 77528833 C A 32 62 BRCA TCGA-E2-A14R SLC6A1 DEL Frame_Shift_Del 3 11070440 G - 47 73 BRCA TCGA-E2-A14R TMEM108 SNP Splice_Site 3 133109180 T A 57 86 BRCA TCGA-E2-A14R GK5 SNP Missense_Mutation 3 141890304 C G 29 91 BRCA TCGA-E2-A14R AP2M1 SNP Missense_Mutation 3 183896904 C A 28 84 BRCA TCGA-E2-A14R ATP13A4 SNP Missense_Mutation 3 193188758 C G 27 52 BRCA TCGA-E2-A14R MUC20 SNP Missense_Mutation 3 195452951 G C 45 55 BRCA TCGA-E2-A14R MUC4 SNP Missense_Mutation 3 195509429 A G 11 50 BRCA TCGA-E2-A14R C3orf77 SNP Missense_Mutation 3 44283717 C A 22 53 BRCA TCGA-E2-A14R DHX30 SNP Nonsense_Mutation 3 47889002 G T 37 65 BRCA TCGA-E2-A14R NDST4 SNP Silent 4 115791933 A G 11 52 BRCA TCGA-E2-A14R ENSG00000225665 SNP Silent 4 121263727 C G 23 36 BRCA TCGA-E2-A14R BOD1L1 SNP Missense_Mutation 4 13606196 A T 10 62 BRCA TCGA-E2-A14R PRKG2 SNP Missense_Mutation 4 82061764 T C 53 26 BRCA TCGA-E2-A14R ARAP3 SNP Missense_Mutation 5 141051178 T C 62 54 BRCA TCGA-E2-A14R MTMR12 SNP Missense_Mutation 5 32233994 G C 44 98 BRCA TCGA-E2-A14R BRD9 SNP Missense_Mutation 5 865540 T A 55 56 BRCA TCGA-E2-A14R FIG4 SNP Missense_Mutation 6 110107520 A T 2 63 BRCA TCGA-E2-A14R HLA-DMB SNP Missense_Mutation 6 32905029 G T 42 73 BRCA TCGA-E2-A14R FAM217A SNP Missense_Mutation 6 4077645 C T 22 61 BRCA TCGA-E2-A14R DST SNP Missense_Mutation 6 56473155 A C 4 51 BRCA TCGA-E2-A14R KHDC1 SNP Silent 6 73951884 A G 15 50 BRCA TCGA-E2-A14R FAM46A SNP Missense_Mutation 6 82461445 C G 24 60 BRCA TCGA-E2-A14R C7orf60 SNP Nonsense_Mutation 7 112462311 C A 32 87 BRCA TCGA-E2-A14R CPA1 SNP Missense_Mutation 7 130023284 A G 8 75 BRCA TCGA-E2-A14R AGBL3 SNP Missense_Mutation 7 134717625 G A 37 73 BRCA TCGA-E2-A14R GALNTL5 SNP Nonsense_Mutation 7 151716746 C T 31 53 BRCA TCGA-E2-A14R MPLKIP SNP Missense_Mutation 7 40172716 C G 28 65 BRCA TCGA-E2-A14R ABCA13 SNP Missense_Mutation 7 48338055 A T 8 50 BRCA TCGA-E2-A14R ASL SNP Missense_Mutation 7 65547366 G C 36 57 BRCA TCGA-E2-A14R AZGP1 SNP Missense_Mutation 7 99565858 G A 42 50 BRCA TCGA-E2-A14R ANGPT1 SNP Missense_Mutation 8 108334142 G C 33 81 BRCA TCGA-E2-A14R MBOAT4 SNP Missense_Mutation 8 29990295 G A 46 53 BRCA TCGA-E2-A14R SLCO5A1 SNP Silent 8 70588856 A G 2 49 BRCA TCGA-E2-A14R C9orf174 SNP Missense_Mutation 9 100092921 C G 29 49 BRCA TCGA-E2-A14S LPHN2 SNP Missense_Mutation 1 82409015 T C 54 92 BRCA TCGA-E2-A14S PLEKHA1 SNP Missense_Mutation 10 124177438 A G 16 90 BRCA TCGA-E2-A14S AHNAK SNP Missense_Mutation 11 62284554 G A 39 56 BRCA TCGA-E2-A14S NPAS4 SNP Missense_Mutation 11 66188712 G A 39 95 BRCA TCGA-E2-A14S MYO7A SNP Missense_Mutation 11 76893500 G A 38 97 BRCA TCGA-E2-A14S ASCL3 SNP Silent 11 8959451 G A 38 49 BRCA TCGA-E2-A14S TRIM53 SNP Missense_Mutation 11 89732527 G A 39 33 BRCA TCGA-E2-A14S PDE3A SNP Silent 12 20522503 G A 39 69 BRCA TCGA-E2-A14S SMARCC2 SNP Silent 12 56565650 G A 46 71 BRCA TCGA-E2-A14S VPS18 SNP Missense_Mutation 15 41194898 C G 19 100 BRCA TCGA-E2-A14S ADAMTS7 SNP Missense_Mutation 15 79069734 G T 45 45 BRCA TCGA-E2-A14S GRIN2A SNP Missense_Mutation 16 10273954 G C 44 81 BRCA TCGA-E2-A14S CACNA1H SNP Silent 16 1268395 C T 19 46 BRCA TCGA-E2-A14S CCP110 SNP Silent 16 19548275 A G 14 49 BRCA TCGA-E2-A14S ZNF668 SNP Silent 16 31075619 G A 39 6 BRCA TCGA-E2-A14S KLHL14 SNP Missense_Mutation 18 30349869 G C 39 96 BRCA TCGA-E2-A14S ENSG00000235297 SNP Missense_Mutation 18 72057442 G T 36 52 BRCA TCGA-E2-A14S CACNA1A SNP Missense_Mutation 19 13356070 G A 39 68 BRCA TCGA-E2-A14S ZNF333 SNP Missense_Mutation 19 14830057 C T 21 73 BRCA TCGA-E2-A14S LOC100287226 SNP Silent 19 22498943 T C 57 49 BRCA TCGA-E2-A14S NMRK2 SNP Missense_Mutation 19 3942216 G A 38 42 BRCA TCGA-E2-A14S KIR3DL3 SNP Silent 19 55247306 A G 3 56 BRCA TCGA-E2-A14S USP29 SNP Missense_Mutation 19 57640371 C T 18 44 BRCA TCGA-E2-A14S MUC16 SNP Silent 19 9069332 G A 48 58 BRCA TCGA-E2-A14S CDK15 SNP Missense_Mutation 2 202744815 C T 23 66 BRCA TCGA-E2-A14S LOC100289192 SNP Missense_Mutation 2 242438383 C T 23 48 BRCA TCGA-E2-A14S ST3GAL5 SNP Missense_Mutation 2 86073664 C T 22 83 BRCA TCGA-E2-A14S RASSF2 SNP Missense_Mutation 20 4771137 C T 27 97 BRCA TCGA-E2-A14S LOC100287161 SNP Missense_Mutation 22 24656759 G A 43 85 BRCA TCGA-E2-A14S CPT1B SNP Missense_Mutation 22 51009679 T C 55 72 BRCA TCGA-E2-A14S MAGEA3 SNP Nonsense_Mutation 23 151936112 G A 39 50 BRCA TCGA-E2-A14S PCDH11X SNP Nonsense_Mutation 23 91133194 C A 29 61 BRCA TCGA-E2-A14S BTD SNP Missense_Mutation 3 15643051 C A 25 51 BRCA TCGA-E2-A14S NAALADL2 SNP Missense_Mutation 3 174974237 A T 12 73 BRCA TCGA-E2-A14S LRRC15 SNP Missense_Mutation 3 194080956 G A 39 55 BRCA TCGA-E2-A14S SNRK SNP Missense_Mutation 3 43389153 C T 27 76 BRCA TCGA-E2-A14S RAD18 SNP Missense_Mutation 3 8983486 T A 52 53 BRCA TCGA-E2-A14S PIK3R1 INS In_Frame_Ins 5 67589601 - GTT 7 89 BRCA TCGA-E2-A14S MTRF1L SNP Missense_Mutation 6 153315705 C G 28 61 BRCA TCGA-E2-A14S KIAA0240 SNP Missense_Mutation 6 42832565 A C 4 61 BRCA TCGA-E2-A14T KIAA1614 SNP Missense_Mutation 1 180904418 G A 38 54 BRCA TCGA-E2-A14T EIF4G3 SNP Silent 1 21167444 G A 43 56 BRCA TCGA-E2-A14T LGALS8 DEL In_Frame_Del 1 236706922 AGG - 3 68 BRCA TCGA-E2-A14T CYP4A22 SNP Silent 1 47610236 C T 25 53 BRCA TCGA-E2-A14T ZNF239 SNP Missense_Mutation 10 44052732 C G 29 61 BRCA TCGA-E2-A14T NEUROG3 SNP Missense_Mutation 10 71332756 C G 19 45 BRCA TCGA-E2-A14T GATA3 INS Frame_Shift_Ins 10 8115874 - G 31 85 BRCA TCGA-E2-A14T EXOC6 SNP Silent 10 94653133 G A 38 50 BRCA TCGA-E2-A14T ABCC8 SNP Missense_Mutation 11 17418752 C T 31 85 BRCA TCGA-E2-A14T NUP160 SNP Missense_Mutation 11 47808045 C T 28 76 BRCA TCGA-E2-A14T SPTBN2 SNP Missense_Mutation 11 66456618 G A 38 65 BRCA TCGA-E2-A14T ATP2A2 SNP Missense_Mutation 12 110781179 C T 23 100 BRCA TCGA-E2-A14T PTMS SNP Nonsense_Mutation 12 6879111 G T 41 70 BRCA TCGA-E2-A14T PTMS SNP Splice_Site 12 6879322 G C 33 69 BRCA TCGA-E2-A14T TBC1D4 DEL Frame_Shift_Del 13 75933979 TC - 50 64 BRCA TCGA-E2-A14T ZBTB42 SNP Missense_Mutation 14 105268210 G A 37 72 BRCA TCGA-E2-A14T UBR7 DEL Frame_Shift_Del 14 93686624 C - 30 67 BRCA TCGA-E2-A14T USP31 SNP Missense_Mutation 16 23096260 C T 19 83 BRCA TCGA-E2-A14T SPAG5 SNP Missense_Mutation 17 26919888 T A 49 45 BRCA TCGA-E2-A14T DDX42 SNP Missense_Mutation 17 61886223 G A 37 86 BRCA TCGA-E2-A14T ITPKC SNP Silent 19 41235234 G T 46 65 BRCA TCGA-E2-A14T KLK7 SNP Missense_Mutation 19 51483714 G A 40 33 BRCA TCGA-E2-A14T TTN SNP Missense_Mutation 2 179429426 A C 2 94 BRCA TCGA-E2-A14T KIF1A SNP Missense_Mutation 2 241662889 T A 54 85 BRCA TCGA-E2-A14T EXOC6B SNP Missense_Mutation 2 72406489 C G 30 74 BRCA TCGA-E2-A14T ITSN1 SNP Missense_Mutation 21 35183459 G A 38 56 BRCA TCGA-E2-A14T CKS1BP6 SNP Silent 23 30635657 C T 21 49 BRCA TCGA-E2-A14T ALDH1L1 SNP Missense_Mutation 3 125828868 C A 17 49 BRCA TCGA-E2-A14T CELSR3 SNP Silent 3 48699138 C T 31 50 BRCA TCGA-E2-A14T DOCK2 SNP Missense_Mutation 5 169098135 C T 19 66 BRCA TCGA-E2-A14T MOGAT3 SNP Missense_Mutation 7 100839243 C A 25 47 BRCA TCGA-E2-A14T ATXN7L1 SNP Missense_Mutation 7 105255024 T A 51 72 BRCA TCGA-E2-A14T B4GALT1 SNP Missense_Mutation 9 33135287 G A 47 96 BRCA TCGA-E2-A14T LOC100287684 SNP Nonsense_Mutation 9 6793146 G A 37 57 BRCA TCGA-E2-A14V ATAD3B SNP Splice_Site 1 1425849 G C 42 55 BRCA TCGA-E2-A14V IGSF9 SNP Silent 1 159900122 G A 35 53 BRCA TCGA-E2-A14V ITLN2 SNP Nonsense_Mutation 1 160920836 G C 48 83 BRCA TCGA-E2-A14V CACNA1E SNP Missense_Mutation 1 181684488 G T 38 96 BRCA TCGA-E2-A14V CFH SNP Missense_Mutation 1 196694377 C A 30 61 BRCA TCGA-E2-A14V KCNH1 SNP Missense_Mutation 1 210856855 G A 37 70 BRCA TCGA-E2-A14V DISP1 SNP Nonsense_Mutation 1 223176630 C T 23 49 BRCA TCGA-E2-A14V NID1 DEL Splice_Site 1 236208972 GAACGTGTTTCTCTGT - 41 64 BRCA TCGA-E2-A14V RYR2 SNP Silent 1 237777585 C T 29 47 BRCA TCGA-E2-A14V DCDC2B SNP Missense_Mutation 1 32681437 T G 55 50 BRCA TCGA-E2-A14V C1orf94 SNP Missense_Mutation 1 34663261 G T 35 57 BRCA TCGA-E2-A14V ITPRIP SNP Missense_Mutation 10 106075563 G A 40 57 BRCA TCGA-E2-A14V SORCS3 SNP Silent 10 106737218 G A 35 53 BRCA TCGA-E2-A14V CCDC172 SNP Missense_Mutation 10 118117417 G T 36 30 BRCA TCGA-E2-A14V PHYH SNP Missense_Mutation 10 13320306 G C 33 76 BRCA TCGA-E2-A14V LOC100289151 SNP Missense_Mutation 10 15057441 C G 30 55 BRCA TCGA-E2-A14V NXPE2 SNP Missense_Mutation 11 114569175 C G 32 52 BRCA TCGA-E2-A14V CYB5R2 SNP Missense_Mutation 11 7689777 C G 32 49 BRCA TCGA-E2-A14V GCN1L1 SNP Silent 12 120613011 C T 23 27 BRCA TCGA-E2-A14V CCDC62 SNP Silent 12 123265847 G A 38 42 BRCA TCGA-E2-A14V ARHGEF25 SNP Missense_Mutation 12 58010663 G A 45 83 BRCA TCGA-E2-A14V AGAP2 SNP Missense_Mutation 12 58125611 C A 27 93 BRCA TCGA-E2-A14V RAB21 SNP Missense_Mutation 12 72176409 T C 52 92 BRCA TCGA-E2-A14V OR11H6 SNP Missense_Mutation 14 20691885 A T 8 68 BRCA TCGA-E2-A14V SLC7A7 SNP Missense_Mutation 14 23248035 T G 60 90 BRCA TCGA-E2-A14V EIF2S1 SNP Missense_Mutation 14 67847477 G A 37 88 BRCA TCGA-E2-A14V PIGB SNP Missense_Mutation 15 55647072 G A 45 97 BRCA TCGA-E2-A14V EFTUD1 SNP Missense_Mutation 15 82450123 G A 40 100 BRCA TCGA-E2-A14V SMG1 INS Frame_Shift_Ins 16 18903661 - AA 49 90 BRCA TCGA-E2-A14V PDILT SNP Missense_Mutation 16 20387489 C G 29 66 BRCA TCGA-E2-A14V DNAH3 SNP Missense_Mutation 16 20976354 T G 56 46 BRCA TCGA-E2-A14V EARS2 SNP Missense_Mutation 16 23563498 C G 32 50 BRCA TCGA-E2-A14V SRCAP SNP Missense_Mutation 16 30724033 C G 18 80 BRCA TCGA-E2-A14V NLRC3 SNP Missense_Mutation 16 3611719 G A 37 65 BRCA TCGA-E2-A14V PHLPP2 SNP Missense_Mutation 16 71682825 C T 31 66 BRCA TCGA-E2-A14V THRA SNP Missense_Mutation 17 38230773 G T 43 63 BRCA TCGA-E2-A14V RSAD1 SNP Missense_Mutation 17 48560768 G T 47 61 BRCA TCGA-E2-A14V MBTD1 SNP Missense_Mutation 17 49270286 C T 31 100 BRCA TCGA-E2-A14V KCNJ16 SNP Silent 17 68128510 C T 29 42 BRCA TCGA-E2-A14V EVPL SNP Missense_Mutation 17 74006302 A C 6 53 BRCA TCGA-E2-A14V AMAC1L1 SNP Nonsense_Mutation 18 11644698 C T 25 51 BRCA TCGA-E2-A14V ENSG00000215512 SNP Missense_Mutation 18 15325695 A G 4 64 BRCA TCGA-E2-A14V RPL17 SNP Missense_Mutation 18 47015767 C T 17 99 BRCA TCGA-E2-A14V LAMA1 SNP Missense_Mutation 18 6942104 G A 45 69 BRCA TCGA-E2-A14V ZSWIM4 SNP Missense_Mutation 19 13941680 C T 31 78 BRCA TCGA-E2-A14V BIRC8 SNP Missense_Mutation 19 53793014 C T 30 74 BRCA TCGA-E2-A14V CACNG7 SNP Silent 19 54416214 G A 38 46 BRCA TCGA-E2-A14V CATSPERD SNP Missense_Mutation 19 5776305 C T 31 60 BRCA TCGA-E2-A14V ZNF530 SNP Missense_Mutation 19 58117885 C A 32 46 BRCA TCGA-E2-A14V OR7G1 SNP Missense_Mutation 19 9226091 C A 20 66 BRCA TCGA-E2-A14V DIRC1 SNP Missense_Mutation 2 189599494 C A 25 48 BRCA TCGA-E2-A14V EHBP1 SNP Missense_Mutation 2 63169992 C G 32 99 BRCA TCGA-E2-A14V AAK1 DEL In_Frame_Del 2 69870164 CTT - 20 72 BRCA TCGA-E2-A14V SYCP2 SNP Missense_Mutation 20 58444998 C G 32 34 BRCA TCGA-E2-A14V CHGB SNP Missense_Mutation 20 5903673 C G 29 62 BRCA TCGA-E2-A14V XKR3 SNP Missense_Mutation 22 17288863 G T 35 61 BRCA TCGA-E2-A14V UTP14A SNP Missense_Mutation 23 129063526 A T 4 64 BRCA TCGA-E2-A14V FAM58A SNP Missense_Mutation 23 152853866 G A 33 66 BRCA TCGA-E2-A14V ARHGAP31 SNP Missense_Mutation 3 119099788 C A 26 64 BRCA TCGA-E2-A14V PAQR9 SNP Missense_Mutation 3 142681942 C G 28 68 BRCA TCGA-E2-A14V MED12L SNP Silent 3 151085954 C T 19 39 BRCA TCGA-E2-A14V PIK3CA SNP Missense_Mutation 3 178952075 A T 9 91 BRCA TCGA-E2-A14V SCN5A SNP Missense_Mutation 3 38592777 T C 58 89 BRCA TCGA-E2-A14V SETD2 SNP Missense_Mutation 3 47158198 A G 6 93 BRCA TCGA-E2-A14V WDFY3 SNP Missense_Mutation 4 85642669 C T 30 99 BRCA TCGA-E2-A14V DGKQ SNP Silent 4 955823 C G 29 49 BRCA TCGA-E2-A14V SLCO6A1 SNP Silent 5 101813402 T A 59 44 BRCA TCGA-E2-A14V PPIP5K2 SNP Missense_Mutation 5 102482291 C T 21 100 BRCA TCGA-E2-A14V PCDHB6 SNP Silent 5 140531491 C T 19 64 BRCA TCGA-E2-A14V SYNPO SNP Silent 5 150028362 G A 38 44 BRCA TCGA-E2-A14V CDH9 SNP Missense_Mutation 5 26885845 C T 19 77 BRCA TCGA-E2-A14V SPEF2 SNP Splice_Site 5 35800068 A T 7 79 BRCA TCGA-E2-A14V CDC20B SNP Missense_Mutation 5 54436202 C T 19 56 BRCA TCGA-E2-A14V KIAA0319 SNP Missense_Mutation 6 24566862 T C 49 58 BRCA TCGA-E2-A14V EXOC2 SNP Missense_Mutation 6 497377 C G 30 100 BRCA TCGA-E2-A14V ASZ1 SNP Missense_Mutation 7 117021097 G C 33 81 BRCA TCGA-E2-A14V CDCA7L SNP Missense_Mutation 7 21946010 C T 23 98 BRCA TCGA-E2-A14V MTBP SNP Missense_Mutation 8 121468800 C G 29 86 BRCA TCGA-E2-A14V RNF139 SNP Missense_Mutation 8 125498596 G A 33 96 BRCA TCGA-E2-A14V LPL SNP Missense_Mutation 8 19805748 C T 17 64 BRCA TCGA-E2-A14V ENTPD4 SNP Missense_Mutation 8 23302096 G C 41 96 BRCA TCGA-E2-A14V ADAM2 SNP Silent 8 39695672 G A 37 51 BRCA TCGA-E2-A14V ZNF483 SNP Silent 9 114305318 T C 58 47 BRCA TCGA-E2-A14V COL5A1 SNP Silent 9 137620530 C T 19 38 BRCA TCGA-E2-A14V FAM75E1 SNP Missense_Mutation 9 90501430 G C 46 51 BRCA TCGA-E2-A14V OMD INS Frame_Shift_Ins 9 95178955 - TGCT 4 76 BRCA TCGA-E2-A14W CTTNBP2NL DEL In_Frame_Del 1 112997128 GAT - 33 99 BRCA TCGA-E2-A14W HFE2 SNP Missense_Mutation 1 145415526 C G 30 44 BRCA TCGA-E2-A14W ITGA10 SNP Silent 1 145530313 C T 17 63 BRCA TCGA-E2-A14W OLFML2B SNP Missense_Mutation 1 161953515 C G 25 83 BRCA TCGA-E2-A14W ATP13A2 SNP Nonsense_Mutation 1 17316489 G A 47 84 BRCA TCGA-E2-A14W OR2T34 SNP Missense_Mutation 1 248737334 G T 42 86 BRCA TCGA-E2-A14W INADL DEL Frame_Shift_Del 1 62293244 C - 30 51 BRCA TCGA-E2-A14W MYPN DEL Frame_Shift_Del 10 69955248 GCCCATTC - 46 55 BRCA TCGA-E2-A14W GRID1 SNP Missense_Mutation 10 87615835 G C 41 83 BRCA TCGA-E2-A14W PLCE1 SNP Missense_Mutation 10 96058171 T A 50 45 BRCA TCGA-E2-A14W DSCAML1 SNP Missense_Mutation 11 117308077 G A 40 74 BRCA TCGA-E2-A14W ABCC8 SNP Missense_Mutation 11 17482153 C T 27 86 BRCA TCGA-E2-A14W KIAA1549L SNP Silent 11 33667477 G A 39 12 BRCA TCGA-E2-A14W FADS2 SNP Missense_Mutation 11 61624993 G C 33 48 BRCA TCGA-E2-A14W PYGM SNP Splice_Site 11 64525907 A T 14 75 BRCA TCGA-E2-A14W CAPN1 SNP Missense_Mutation 11 64972292 G A 42 93 BRCA TCGA-E2-A14W UTP20 SNP Missense_Mutation 12 101705565 C A 28 72 BRCA TCGA-E2-A14W SLC24A6 DEL Frame_Shift_Del 12 113753164 C - 18 64 BRCA TCGA-E2-A14W CIT SNP Missense_Mutation 12 120295405 C G 24 54 BRCA TCGA-E2-A14W FBRSL1 SNP Missense_Mutation 12 133158042 T A 54 48 BRCA TCGA-E2-A14W NAV3 SNP Missense_Mutation 12 78542637 C T 27 61 BRCA TCGA-E2-A14W BRCA2 DEL Frame_Shift_Del 13 32907409 ATCTT - 8 64 BRCA TCGA-E2-A14W PATL2 SNP Missense_Mutation 15 44962197 G A 35 90 BRCA TCGA-E2-A14W SORD SNP Missense_Mutation 15 45335550 A G 8 85 BRCA TCGA-E2-A14W NEO1 SNP Missense_Mutation 15 73409162 A C 2 76 BRCA TCGA-E2-A14W KIAA1199 SNP Silent 15 81216988 C G 29 53 BRCA TCGA-E2-A14W BCMO1 SNP Missense_Mutation 16 81303899 G A 37 61 BRCA TCGA-E2-A14W ARHGAP23 SNP Missense_Mutation 17 36622726 C T 23 55 BRCA TCGA-E2-A14W CAMKK1 DEL In_Frame_Del 17 3775903 AATCGTCGATGAATGGGC - 1 61 BRCA TCGA-E2-A14W METTL23 SNP Nonsense_Mutation 17 74729124 C G 29 84 BRCA TCGA-E2-A14W MGAT5B SNP Missense_Mutation 17 74934211 C A 28 62 BRCA TCGA-E2-A14W FHOD3 SNP Missense_Mutation 18 34289076 A G 9 49 BRCA TCGA-E2-A14W CCDC159 SNP Silent 19 11464539 C T 31 50 BRCA TCGA-E2-A14W JAK3 DEL Frame_Shift_Del 19 17954274 AGCCCAA - 7 55 BRCA TCGA-E2-A14W RYR1 SNP Missense_Mutation 19 38990591 C A 17 76 BRCA TCGA-E2-A14W CPT1C SNP Missense_Mutation 19 50195607 T A 54 68 BRCA TCGA-E2-A14W LRRC4B SNP Silent 19 51022417 G T 38 91 BRCA TCGA-E2-A14W NLRP12 SNP Missense_Mutation 19 54307284 C T 30 50 BRCA TCGA-E2-A14W ENSG00000186629 SNP Missense_Mutation 19 6981117 T A 56 52 BRCA TCGA-E2-A14W OR7D4 DEL Frame_Shift_Del 19 9324875 CC - 30 54 BRCA TCGA-E2-A14W SULT1C4 SNP Silent 2 108998294 T C 54 51 BRCA TCGA-E2-A14W KCNH7 DEL Frame_Shift_Del 2 163236470 A - 10 54 BRCA TCGA-E2-A14W DNAH7 SNP Missense_Mutation 2 196749335 T C 52 56 BRCA TCGA-E2-A14W SUMO1 SNP Nonstop_Mutation 2 203084812 A C 7 52 BRCA TCGA-E2-A14W DYTN SNP Missense_Mutation 2 207530636 A C 16 23 BRCA TCGA-E2-A14W C2orf43 DEL In_Frame_Del 2 20886840 ATA - 8 50 BRCA TCGA-E2-A14W MAP2 SNP Silent 2 210559282 C T 17 54 BRCA TCGA-E2-A14W TNS1 SNP Missense_Mutation 2 218686502 C T 28 76 BRCA TCGA-E2-A14W HEATR5B SNP Missense_Mutation 2 37217922 C G 29 100 BRCA TCGA-E2-A14W SOS1 SNP Missense_Mutation 2 39249723 G A 47 100 BRCA TCGA-E2-A14W B3GNT2 SNP Missense_Mutation 2 62450052 A T 14 60 BRCA TCGA-E2-A14W TRABD2A SNP Missense_Mutation 2 85066288 A T 3 68 BRCA TCGA-E2-A14W NCAM2 SNP Silent 21 22664443 A T 5 48 BRCA TCGA-E2-A14W ADAMTS1 DEL Frame_Shift_Del 21 28212818 GAGGTGCCAGG - 37 71 BRCA TCGA-E2-A14W IFNAR2 SNP Missense_Mutation 21 34635572 G A 41 55 BRCA TCGA-E2-A14W PCNT SNP Missense_Mutation 21 47783719 G A 41 64 BRCA TCGA-E2-A14W SPECC1L SNP Missense_Mutation 22 24765272 A C 1 91 BRCA TCGA-E2-A14W MYO18B SNP Missense_Mutation 22 26299726 G T 36 44 BRCA TCGA-E2-A14W KREMEN1 SNP Missense_Mutation 22 29534662 G T 42 60 BRCA TCGA-E2-A14W TYMP SNP Silent 22 50967953 C T 29 51 BRCA TCGA-E2-A14W DMD SNP Splice_site 23 32328199 C T 24 83 BRCA TCGA-E2-A14W ELK1 SNP Missense_Mutation 23 47498688 G C 41 70 BRCA TCGA-E2-A14W PAGE1 SNP Missense_Mutation 23 49454099 C G 21 56 BRCA TCGA-E2-A14W SHROOM4 INS Frame_Shift_Ins 23 50350726 - C 62 66 BRCA TCGA-E2-A14W VCX3A SNP Missense_Mutation 23 6451836 C G 30 45 BRCA TCGA-E2-A14W RGAG4 SNP Missense_Mutation 23 71351178 G C 37 58 BRCA TCGA-E2-A14W VCX SNP Missense_Mutation 23 7812007 G C 41 50 BRCA TCGA-E2-A14W PPP2R3A SNP Silent 3 135721060 C A 23 47 BRCA TCGA-E2-A14W PPP2R3A SNP Missense_Mutation 3 135745705 C T 17 82 BRCA TCGA-E2-A14W WDR49 SNP Missense_Mutation 3 167320043 T G 61 59 BRCA TCGA-E2-A14W SATB1 SNP Missense_Mutation 3 18458465 A T 3 92 BRCA TCGA-E2-A14W CYP8B1 DEL In_Frame_Del 3 42916934 TGAGTG - 55 33 BRCA TCGA-E2-A14W TMEM89 DEL In_Frame_Del 3 48658374 GTGCAGGAC - 48 51 BRCA TCGA-E2-A14W CRYBG3 SNP Missense_Mutation 3 97614826 A G 8 62 BRCA TCGA-E2-A14W CENPE SNP Missense_Mutation 4 104066383 C T 30 58 BRCA TCGA-E2-A14W LETM1 SNP Splice_Site 4 1836571 C A 18 96 BRCA TCGA-E2-A14W ENAM SNP Missense_Mutation 4 71510070 G C 36 53 BRCA TCGA-E2-A14W GPRIN3 DEL Frame_Shift_Del 4 90169748 GTTTTGTGGCC - 48 54 BRCA TCGA-E2-A14W CEP120 SNP Missense_Mutation 5 122729131 A C 1 55 BRCA TCGA-E2-A14W ZNF608 DEL In_Frame_Del 5 124080558 TCCAAATCAGCG - 54 92 BRCA TCGA-E2-A14W ANXA6 SNP Missense_Mutation 5 150483215 C G 21 78 BRCA TCGA-E2-A14W GHR SNP Missense_Mutation 5 42718684 G A 41 87 BRCA TCGA-E2-A14W ZFYVE16 DEL Frame_Shift_Del 5 79743961 G - 47 51 BRCA TCGA-E2-A14W MAS1 SNP Missense_Mutation 6 160328951 G C 45 82 BRCA TCGA-E2-A14W HIST1H1C DEL In_Frame_Del 6 26056168 CGCGGCCGGCTTCTT - 23 34 BRCA TCGA-E2-A14W OR2B6 SNP Silent 6 27925573 C G 29 54 BRCA TCGA-E2-A14W CPNE5 SNP Missense_Mutation 6 36710076 G C 43 61 BRCA TCGA-E2-A14W ANKRD6 SNP Missense_Mutation 6 90338952 C G 32 60 BRCA TCGA-E2-A14W BACH2 SNP Silent 6 90660211 G A 46 55 BRCA TCGA-E2-A14W RELN SNP Missense_Mutation 7 103183270 C G 20 50 BRCA TCGA-E2-A14W PLEKHA8 DEL Splice_site 7 30092481 AGGTAAAAACAAA - 7 76 BRCA TCGA-E2-A14W DPY19L1 SNP Missense_Mutation 7 35057529 T A 60 67 BRCA TCGA-E2-A14W PDGFRL SNP Missense_Mutation 8 17486008 T C 54 89 BRCA TCGA-E2-A14W PREX2 SNP Silent 8 69002851 G A 36 59 BRCA TCGA-E2-A14X BCAR3 SNP Silent 1 94032999 C T 27 40 BRCA TCGA-E2-A14X TUBA3C SNP Silent 13 19748195 G A 35 81 BRCA TCGA-E2-A14X OR6S1 SNP Silent 14 21109743 G C 33 53 BRCA TCGA-E2-A14X G2E3 SNP Silent 14 31071093 C T 17 61 BRCA TCGA-E2-A14X ARHGAP5 SNP Missense_Mutation 14 32562091 G A 40 100 BRCA TCGA-E2-A14X AQR SNP Missense_Mutation 15 35168164 A G 16 88 BRCA TCGA-E2-A14X ZFP106 SNP Missense_Mutation 15 42740787 G C 37 73 BRCA TCGA-E2-A14X USP31 SNP Silent 16 23116870 T C 56 51 BRCA TCGA-E2-A14X WFIKKN1 SNP Missense_Mutation 16 682837 G A 38 96 BRCA TCGA-E2-A14X TP53 SNP Nonsense_Mutation 17 7578212 G A 37 66 BRCA TCGA-E2-A14X DNAH17 SNP Silent 17 76471537 G A 40 44 BRCA TCGA-E2-A14X ZNF91 SNP Missense_Mutation 19 23542476 C G 30 83 BRCA TCGA-E2-A14X TGFB1 SNP Silent 19 41858878 G T 42 55 BRCA TCGA-E2-A14X TTN SNP Missense_Mutation 2 179480082 C T 19 100 BRCA TCGA-E2-A14X PLXNA3 SNP Missense_Mutation 23 153699919 G A 37 94 BRCA TCGA-E2-A14X NAP1L2 SNP Silent 23 72433234 A G 9 42 BRCA TCGA-E2-A14X MYH15 SNP Missense_Mutation 3 108129643 G T 39 58 BRCA TCGA-E2-A14X GAP43 SNP Missense_Mutation 3 115382754 G T 41 48 BRCA TCGA-E2-A14X HSPBAP1 SNP Missense_Mutation 3 122459884 G A 47 79 BRCA TCGA-E2-A14X CDHR4 SNP Missense_Mutation 3 49832471 G A 39 61 BRCA TCGA-E2-A14X TLR3 SNP Missense_Mutation 4 187003591 C T 31 58 BRCA TCGA-E2-A14X CTNND2 SNP Missense_Mutation 5 11346626 C G 28 76 BRCA TCGA-E2-A14X ADAMTS2 SNP Silent 5 178608136 G A 40 39 BRCA TCGA-E2-A14X TARS SNP Missense_Mutation 5 33453503 G A 45 100 BRCA TCGA-E2-A14X RDBP SNP Missense_Mutation 6 31922367 C T 23 93 BRCA TCGA-E2-A14X HECW1 SNP Silent 7 43591895 C A 31 40 BRCA TCGA-E2-A14Y ATP1A1 SNP Splice_site 1 116933404 G A 44 90 BRCA TCGA-E2-A14Y FLG SNP Missense_Mutation 1 152278409 A T 10 52 BRCA TCGA-E2-A14Y OR10K1 SNP Missense_Mutation 1 158436273 A T 2 59 BRCA TCGA-E2-A14Y PDZD8 SNP Missense_Mutation 10 119078457 C T 32 86 BRCA TCGA-E2-A14Y PCDH15 SNP Nonsense_Mutation 10 56077174 G A 38 60 BRCA TCGA-E2-A14Y ANK3 SNP Missense_Mutation 10 61946501 C G 32 84 BRCA TCGA-E2-A14Y AHNAK SNP Silent 11 62297977 T C 62 44 BRCA TCGA-E2-A14Y C11orf85 DEL Splice_Site 11 64722223 CCCTAC - 30 50 BRCA TCGA-E2-A14Y PLEKHG6 SNP Silent 12 6426507 C T 30 51 BRCA TCGA-E2-A14Y MGA DEL Frame_Shift_Del 15 42002989 G - 47 65 BRCA TCGA-E2-A14Y TIPIN SNP Missense_Mutation 15 66629421 C G 30 64 BRCA TCGA-E2-A14Y ISLR SNP Silent 15 74468237 G A 38 34 BRCA TCGA-E2-A14Y SNTB2 SNP Silent 16 69294160 A G 2 54 BRCA TCGA-E2-A14Y LOC732391 SNP Nonsense_Mutation 17 15468937 C T 30 78 BRCA TCGA-E2-A14Y SEZ6 SNP Silent 17 27296863 G A 45 56 BRCA TCGA-E2-A14Y ARRB2 SNP Missense_Mutation 17 4621248 C T 29 67 BRCA TCGA-E2-A14Y TP53 SNP Missense_Mutation 17 7578524 G C 47 97 BRCA TCGA-E2-A14Y KANK2 SNP Missense_Mutation 19 11277272 C T 32 67 BRCA TCGA-E2-A14Y AKAP8L SNP Silent 19 15511970 G C 39 20 BRCA TCGA-E2-A14Y ZNF540 SNP Missense_Mutation 19 38104051 G A 45 43 BRCA TCGA-E2-A14Y LMTK3 SNP Silent 19 49014822 G A 39 46 BRCA TCGA-E2-A14Y TSHZ2 SNP Missense_Mutation 20 51871700 G A 39 82 BRCA TCGA-E2-A14Y KIAA1210 SNP Missense_Mutation 23 118284280 G A 39 32 BRCA TCGA-E2-A14Y PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A14Y LAMB2 SNP Missense_Mutation 3 49159432 C T 18 59 BRCA TCGA-E2-A14Y FGFBP2 SNP Missense_Mutation 4 15964689 G T 43 81 BRCA TCGA-E2-A14Y MTRR SNP Missense_Mutation 5 7889262 C G 28 63 BRCA TCGA-E2-A14Y EFHA2 SNP Missense_Mutation 8 16961987 G C 45 93 BRCA TCGA-E2-A14Y ANK1 SNP Missense_Mutation 8 41582042 G A 45 100 BRCA TCGA-E2-A14Y HAUS6 SNP Missense_Mutation 9 19096691 G C 33 70 BRCA TCGA-E2-A14Z AMPD1 SNP Missense_Mutation 1 115226908 C G 20 62 BRCA TCGA-E2-A14Z TATDN3 SNP Missense_Mutation 1 212985604 G A 45 55 BRCA TCGA-E2-A14Z GMEB1 SNP Missense_Mutation 1 29023445 G A 45 98 BRCA TCGA-E2-A14Z PKD2L1 SNP Missense_Mutation 10 102054793 C T 19 53 BRCA TCGA-E2-A14Z PTEN DEL Frame_Shift_Del 10 89717727 GTGATATCAAA - 44 96 BRCA TCGA-E2-A14Z CYP2C19 SNP Silent 10 96580363 C A 30 39 BRCA TCGA-E2-A14Z PKNOX2 SNP Missense_Mutation 11 125280153 T C 59 89 BRCA TCGA-E2-A14Z KIRREL3 SNP Silent 11 126396533 C T 23 16 BRCA TCGA-E2-A14Z OR51Q1 SNP Missense_Mutation 11 5444328 C G 25 62 BRCA TCGA-E2-A14Z OR5R1 SNP Silent 11 56185676 T C 49 44 BRCA TCGA-E2-A14Z ROM1 SNP Silent 11 62381062 G T 46 55 BRCA TCGA-E2-A14Z DTX1 SNP Missense_Mutation 12 113532664 T A 59 73 BRCA TCGA-E2-A14Z NBEA SNP Silent 13 35517230 C T 31 94 BRCA TCGA-E2-A14Z VWA8 SNP Missense_Mutation 13 42149921 C T 29 30 BRCA TCGA-E2-A14Z HAUS4 SNP Missense_Mutation 14 23421871 G A 35 80 BRCA TCGA-E2-A14Z ZKSCAN2 SNP Missense_Mutation 16 25266659 C T 18 50 BRCA TCGA-E2-A14Z ZFHX3 SNP Silent 16 72984482 G A 37 50 BRCA TCGA-E2-A14Z ITGAE SNP Silent 17 3620003 C T 29 50 BRCA TCGA-E2-A14Z TP53 SNP Missense_Mutation 17 7577094 G A 39 66 BRCA TCGA-E2-A14Z ILF3 SNP Missense_Mutation 19 10781755 C G 21 75 BRCA TCGA-E2-A14Z CIRBP SNP Missense_Mutation 19 1272339 G A 38 43 BRCA TCGA-E2-A14Z ZNF780B SNP Missense_Mutation 19 40541078 C T 22 71 BRCA TCGA-E2-A14Z MAP3K10 SNP Silent 19 40704346 C T 31 49 BRCA TCGA-E2-A14Z PSG6 SNP Missense_Mutation 19 43411997 G T 43 51 BRCA TCGA-E2-A14Z MED25 SNP Missense_Mutation 19 50322461 C G 29 76 BRCA TCGA-E2-A14Z CD33 SNP Splice_site 19 51738413 G T 41 50 BRCA TCGA-E2-A14Z TGFBRAP1 SNP Missense_Mutation 2 105897089 G A 45 100 BRCA TCGA-E2-A14Z NCOA5 SNP Silent 20 44692114 G A 45 59 BRCA TCGA-E2-A14Z PRPF6 SNP Silent 20 62658961 G A 33 59 BRCA TCGA-E2-A14Z CCT8L2 SNP Silent 22 17072619 G A 38 45 BRCA TCGA-E2-A14Z IL13RA2 SNP Silent 23 114244201 A C 3 51 BRCA TCGA-E2-A14Z FRMPD4 SNP Missense_Mutation 23 12736883 G T 39 80 BRCA TCGA-E2-A14Z CSF2RA SNP Missense_Mutation 23 1407467 T A 58 51 BRCA TCGA-E2-A14Z SPANXD SNP Silent 23 140786506 G A 40 51 BRCA TCGA-E2-A14Z CCNB3 INS Frame_Shift_Ins 23 50089661 - A 29 68 BRCA TCGA-E2-A14Z RASA2 SNP Nonsense_Mutation 3 141277776 G T 33 89 BRCA TCGA-E2-A14Z SLC4A7 SNP Splice_Site 3 27418337 C T 20 87 BRCA TCGA-E2-A14Z XIRP1 SNP Missense_Mutation 3 39226889 G A 41 51 BRCA TCGA-E2-A14Z RBM6 SNP Missense_Mutation 3 50005657 C A 29 88 BRCA TCGA-E2-A14Z ABHD14A-ACY1 SNP Missense_Mutation 3 52019910 G C 45 56 BRCA TCGA-E2-A14Z IL17RD SNP Silent 3 57132384 G A 33 62 BRCA TCGA-E2-A14Z GUCY1B3 SNP Silent 4 156721140 C T 17 59 BRCA TCGA-E2-A14Z TMCO6 SNP Missense_Mutation 5 140022500 C T 32 64 BRCA TCGA-E2-A14Z PCDHB14 SNP Missense_Mutation 5 140604455 G A 40 47 BRCA TCGA-E2-A14Z ATP10B SNP Missense_Mutation 5 160059363 C G 30 71 BRCA TCGA-E2-A14Z DDX41 SNP Missense_Mutation 5 176943429 C T 31 64 BRCA TCGA-E2-A14Z WDR70 SNP Silent 5 37605229 G A 37 46 BRCA TCGA-E2-A14Z CARD6 SNP Missense_Mutation 5 40843622 G C 48 54 BRCA TCGA-E2-A14Z ANKRD31 SNP Missense_Mutation 5 74364415 C T 32 79 BRCA TCGA-E2-A14Z F2RL2 SNP Missense_Mutation 5 75914384 C T 32 54 BRCA TCGA-E2-A14Z GPR98 SNP Missense_Mutation 5 90024745 T G 64 51 BRCA TCGA-E2-A14Z SPATA9 SNP Missense_Mutation 5 95011246 G A 41 63 BRCA TCGA-E2-A14Z GRIK2 SNP Missense_Mutation 6 102074363 A C 7 90 BRCA TCGA-E2-A14Z MTHFD1L SNP Missense_Mutation 6 151334924 G A 47 100 BRCA TCGA-E2-A14Z SLC22A3 SNP Silent 6 160858113 G A 39 17 BRCA TCGA-E2-A14Z MSH5 SNP Missense_Mutation 6 31727737 G A 37 78 BRCA TCGA-E2-A14Z GSTA4 SNP Nonsense_Mutation 6 52849324 G A 46 58 BRCA TCGA-E2-A14Z EPHA7 SNP Missense_Mutation 6 94068126 C A 17 100 BRCA TCGA-E2-A14Z MPP6 SNP Silent 7 24718895 T C 52 56 BRCA TCGA-E2-A14Z HOXA5 SNP Missense_Mutation 7 27181585 T C 52 90 BRCA TCGA-E2-A14Z ARFGEF1 SNP Missense_Mutation 8 68178346 G A 45 100 BRCA TCGA-E2-A150 LCE6A SNP Silent 1 152816068 C T 18 48 BRCA TCGA-E2-A150 CHRNB2 SNP Missense_Mutation 1 154543672 G A 39 95 BRCA TCGA-E2-A150 OR6Y1 SNP Silent 1 158517488 G C 34 42 BRCA TCGA-E2-A150 TMCO4 SNP Silent 1 20009551 G A 47 61 BRCA TCGA-E2-A150 USH2A SNP Silent 1 215953312 C T 21 51 BRCA TCGA-E2-A150 AHCTF1 SNP Missense_Mutation 1 247014111 C A 29 63 BRCA TCGA-E2-A150 ACOT11 SNP Missense_Mutation 1 55059698 C G 23 64 BRCA TCGA-E2-A150 SLC35D1 SNP Missense_Mutation 1 67507959 G C 43 96 BRCA TCGA-E2-A150 SLC44A5 SNP Missense_Mutation 1 75708648 G C 46 66 BRCA TCGA-E2-A150 USP33 SNP Missense_Mutation 1 78194177 T A 52 62 BRCA TCGA-E2-A150 C10orf47 DEL Frame_Shift_Del 10 11908656 CTCTG - 24 64 BRCA TCGA-E2-A150 ZEB1 SNP Silent 10 31810768 G A 37 47 BRCA TCGA-E2-A150 PCDH15 SNP Missense_Mutation 10 55944938 G A 36 67 BRCA TCGA-E2-A150 ZNF365 SNP Missense_Mutation 10 64425930 T C 56 50 BRCA TCGA-E2-A150 SFMBT2 SNP Missense_Mutation 10 7244480 T G 64 60 BRCA TCGA-E2-A150 BCAT1 SNP Missense_Mutation 12 24970952 A G 6 50 BRCA TCGA-E2-A150 DNAH3 SNP Missense_Mutation 16 20955961 G T 33 64 BRCA TCGA-E2-A150 DNAH9 SNP Nonsense_Mutation 17 11522985 G T 41 81 BRCA TCGA-E2-A150 SCPEP1 SNP Missense_Mutation 17 55058560 T A 62 66 BRCA TCGA-E2-A150 TP53 SNP Nonsense_Mutation 17 7578402 G T 42 53 BRCA TCGA-E2-A150 SETBP1 SNP Silent 18 42643576 C G 22 72 BRCA TCGA-E2-A150 CLUL1 SNP Missense_Mutation 18 618062 C T 25 64 BRCA TCGA-E2-A150 NCCRP1 SNP Nonsense_Mutation 19 39690990 G T 37 74 BRCA TCGA-E2-A150 PSMC4 SNP Missense_Mutation 19 40480708 G A 42 94 BRCA TCGA-E2-A150 LIG1 SNP Missense_Mutation 19 48620916 G C 33 66 BRCA TCGA-E2-A150 ACVR1C SNP Missense_Mutation 2 158406760 C A 32 100 BRCA TCGA-E2-A150 CPS1 SNP Missense_Mutation 2 211471611 T G 52 89 BRCA TCGA-E2-A150 ERBB4 SNP Missense_Mutation 2 212543900 C T 30 66 BRCA TCGA-E2-A150 SPEG SNP Silent 2 220354392 A C 7 56 BRCA TCGA-E2-A150 KDM3A SNP Missense_Mutation 2 86705821 T G 54 77 BRCA TCGA-E2-A150 ZNF217 SNP Silent 20 52192498 A G 4 47 BRCA TCGA-E2-A150 BCAS1 SNP Nonsense_Mutation 20 52570137 G T 45 67 BRCA TCGA-E2-A150 LOC100288017 SNP Silent 21 14568634 G A 38 51 BRCA TCGA-E2-A150 MORF4L2 SNP Silent 23 102931122 C A 21 53 BRCA TCGA-E2-A150 CACNA1F SNP Missense_Mutation 23 49065116 C T 27 53 BRCA TCGA-E2-A150 COPG1 SNP Splice_Site 3 128996136 G C 35 96 BRCA TCGA-E2-A150 SULT1E1 SNP Missense_Mutation 4 70715248 C T 26 63 BRCA TCGA-E2-A150 LOC100288554 SNP Missense_Mutation 4 9423986 C T 22 49 BRCA TCGA-E2-A150 HAVCR1 SNP Missense_Mutation 5 156464344 G A 40 32 BRCA TCGA-E2-A150 ITGA1 SNP Missense_Mutation 5 52216261 G A 37 50 BRCA TCGA-E2-A150 PPP1R10 SNP Missense_Mutation 6 30571347 C T 20 93 BRCA TCGA-E2-A150 EYS SNP Missense_Mutation 6 65301142 T G 64 65 BRCA TCGA-E2-A150 RWDD2A SNP Missense_Mutation 6 83905471 T A 57 89 BRCA TCGA-E2-A150 BRAF SNP Missense_Mutation 7 140476796 A G 5 93 BRCA TCGA-E2-A150 RB1CC1 SNP Nonsense_Mutation 8 53569190 T A 62 89 BRCA TCGA-E2-A150 CACNA1B SNP Missense_Mutation 9 140938304 G A 39 63 BRCA TCGA-E2-A152 GPSM2 SNP Missense_Mutation 1 109445764 G A 34 100 BRCA TCGA-E2-A152 RBM8A SNP Missense_Mutation 1 145508273 G T 41 90 BRCA TCGA-E2-A152 OTUD7B SNP Missense_Mutation 1 149937782 C T 20 62 BRCA TCGA-E2-A152 SPRR2F SNP Nonsense_Mutation 1 153085068 G A 45 69 BRCA TCGA-E2-A152 THBS3 SNP Missense_Mutation 1 155165801 G C 41 90 BRCA TCGA-E2-A152 GPATCH4 SNP Missense_Mutation 1 156567909 C A 30 69 BRCA TCGA-E2-A152 MNDA SNP Missense_Mutation 1 158812198 G C 33 49 BRCA TCGA-E2-A152 SZRD1 SNP Missense_Mutation 1 16719813 G C 33 60 BRCA TCGA-E2-A152 PAPPA2 SNP Missense_Mutation 1 176564678 C A 18 61 BRCA TCGA-E2-A152 FAM58B SNP Silent 1 200182787 C T 30 54 BRCA TCGA-E2-A152 CD55 SNP Missense_Mutation 1 207498997 G A 37 15 BRCA TCGA-E2-A152 EIF4G3 SNP Missense_Mutation 1 21175934 C T 29 99 BRCA TCGA-E2-A152 PGBD5 SNP Missense_Mutation 1 230503782 G C 41 52 BRCA TCGA-E2-A152 OR2T34 SNP Missense_Mutation 1 248737415 G T 43 59 BRCA TCGA-E2-A152 PTPRU SNP Missense_Mutation 1 29587268 G A 45 98 BRCA TCGA-E2-A152 CA6 SNP Missense_Mutation 1 9022689 C T 32 61 BRCA TCGA-E2-A152 SNX7 SNP Nonsense_Mutation 1 99150448 C G 29 89 BRCA TCGA-E2-A152 WDR96 SNP Splice_Site 10 105965792 C G 32 49 BRCA TCGA-E2-A152 FAM45A SNP Missense_Mutation 10 120863682 C G 29 67 BRCA TCGA-E2-A152 FANK1 SNP Missense_Mutation 10 127668745 C T 29 59 BRCA TCGA-E2-A152 TTC18 SNP Nonsense_Mutation 10 75034278 A C 8 51 BRCA TCGA-E2-A152 TEAD1 SNP Nonsense_Mutation 11 12785961 C G 29 100 BRCA TCGA-E2-A152 SLC17A6 SNP Missense_Mutation 11 22391723 G A 45 100 BRCA TCGA-E2-A152 OR56A5 SNP Missense_Mutation 11 5989304 C T 29 52 BRCA TCGA-E2-A152 OR2AG1 SNP Missense_Mutation 11 6807135 C G 32 53 BRCA TCGA-E2-A152 LRRC43 SNP Silent 12 122685099 G A 46 49 BRCA TCGA-E2-A152 CCNT1 SNP Silent 12 49086993 G C 45 53 BRCA TCGA-E2-A152 AQP5 SNP Missense_Mutation 12 50355892 C G 31 69 BRCA TCGA-E2-A152 FAM186A SNP Silent 12 50747708 C T 32 63 BRCA TCGA-E2-A152 DGKA SNP Missense_Mutation 12 56335341 A G 2 87 BRCA TCGA-E2-A152 NFATC4 SNP Missense_Mutation 14 24836334 C G 32 50 BRCA TCGA-E2-A152 SDR39U1 SNP Missense_Mutation 14 24909407 C T 31 51 BRCA TCGA-E2-A152 EML5 SNP Missense_Mutation 14 89091348 C T 32 96 BRCA TCGA-E2-A152 GOLGA8G SNP Missense_Mutation 15 28769180 C T 30 64 BRCA TCGA-E2-A152 UNC13C SNP Nonsense_Mutation 15 54793090 C T 29 98 BRCA TCGA-E2-A152 ZNF609 SNP Missense_Mutation 15 64792007 A G 4 56 BRCA TCGA-E2-A152 SMAD3 SNP Missense_Mutation 15 67457304 G A 37 97 BRCA TCGA-E2-A152 CHRNB4 SNP Missense_Mutation 15 78921439 G A 33 64 BRCA TCGA-E2-A152 CCDC154 SNP Missense_Mutation 16 1488633 C T 31 64 BRCA TCGA-E2-A152 TESSP1 DEL In_Frame_Del 16 2848500 GGCGCTGCTGCT - 43 53 BRCA TCGA-E2-A152 C16orf96 SNP Silent 16 4638311 C G 29 41 BRCA TCGA-E2-A152 SF3B3 SNP Missense_Mutation 16 70569223 C T 29 98 BRCA TCGA-E2-A152 ZNF469 SNP Nonsense_Mutation 16 88504833 C G 29 52 BRCA TCGA-E2-A152 SNAI3 SNP Silent 16 88747605 G A 45 57 BRCA TCGA-E2-A152 KRTAP4-8 SNP Missense_Mutation 17 39254032 G T 43 58 BRCA TCGA-E2-A152 PPM1E SNP Nonsense_Mutation 17 57043169 C G 29 100 BRCA TCGA-E2-A152 CHRNB1 SNP Silent 17 7359155 C A 31 49 BRCA TCGA-E2-A152 TP53 SNP Missense_Mutation 17 7578536 T C 63 89 BRCA TCGA-E2-A152 SMAD2 SNP Missense_Mutation 18 45372102 A C 1 94 BRCA TCGA-E2-A152 DCC SNP Missense_Mutation 18 51053085 G A 45 89 BRCA TCGA-E2-A152 LPPR2 SNP Silent 19 11473233 C G 29 44 BRCA TCGA-E2-A152 EPOR SNP Missense_Mutation 19 11488778 G A 45 68 BRCA TCGA-E2-A152 MAST1 SNP Missense_Mutation 19 12976890 C T 31 94 BRCA TCGA-E2-A152 FBL SNP Missense_Mutation 19 40328380 C T 31 96 BRCA TCGA-E2-A152 LTBP4 SNP Missense_Mutation 19 41117097 G T 37 61 BRCA TCGA-E2-A152 CCDC114 SNP Missense_Mutation 19 48800800 C T 23 51 BRCA TCGA-E2-A152 C19orf76 SNP Missense_Mutation 19 50193365 G A 37 42 BRCA TCGA-E2-A152 AP2A1 SNP Silent 19 50302177 C T 31 49 BRCA TCGA-E2-A152 ZNF480 SNP Nonsense_Mutation 19 52825581 C T 19 44 BRCA TCGA-E2-A152 NLRP2 SNP Splice_Site 19 55493529 G C 33 50 BRCA TCGA-E2-A152 ZSCAN5A SNP Missense_Mutation 19 56735124 C G 32 38 BRCA TCGA-E2-A152 TAF1B SNP Missense_Mutation 2 10050972 G A 37 87 BRCA TCGA-E2-A152 IL37 SNP Missense_Mutation 2 113676141 G C 41 56 BRCA TCGA-E2-A152 THSD7B SNP Missense_Mutation 2 137814238 G C 33 65 BRCA TCGA-E2-A152 RIF1 SNP Missense_Mutation 2 152322549 C T 32 97 BRCA TCGA-E2-A152 C2orf83 SNP Silent 2 228476365 A G 10 62 BRCA TCGA-E2-A152 TACR1 SNP Silent 2 75280858 C A 29 55 BRCA TCGA-E2-A152 SPINT3 SNP Nonsense_Mutation 20 44141314 C A 29 43 BRCA TCGA-E2-A152 TMEM189-UBE2V1 SNP Nonsense_Mutation 20 48699337 G A 45 100 BRCA TCGA-E2-A152 ZBTB46 SNP Missense_Mutation 20 62421337 C G 32 62 BRCA TCGA-E2-A152 ZBTB46 SNP Missense_Mutation 20 62421476 G T 33 71 BRCA TCGA-E2-A152 VSIG1 SNP Silent 23 107301404 C T 30 46 BRCA TCGA-E2-A152 GABRQ SNP Missense_Mutation 23 151808900 G A 37 78 BRCA TCGA-E2-A152 P2RY4 SNP Silent 23 69478551 G C 45 53 BRCA TCGA-E2-A152 KIAA2022 SNP Missense_Mutation 23 73962903 C G 29 97 BRCA TCGA-E2-A152 ATP7A SNP Missense_Mutation 23 77289220 G A 33 76 BRCA TCGA-E2-A152 HMGN5 SNP Nonsense_Mutation 23 80371738 C A 29 57 BRCA TCGA-E2-A152 PLA1A SNP Silent 3 119327722 A T 11 31 BRCA TCGA-E2-A152 MYLK SNP Missense_Mutation 3 123419644 C G 30 72 BRCA TCGA-E2-A152 TSC22D2 SNP Missense_Mutation 3 150127372 G C 41 96 BRCA TCGA-E2-A152 PIK3CA SNP Silent 3 178941973 C T 29 60 BRCA TCGA-E2-A152 MAP4 SNP Nonsense_Mutation 3 47951254 C A 29 65 BRCA TCGA-E2-A152 LOC100289156 SNP Missense_Mutation 3 49459189 C G 32 48 BRCA TCGA-E2-A152 CDHR4 SNP Missense_Mutation 3 49831147 G A 45 52 BRCA TCGA-E2-A152 NSUN3 SNP Silent 3 93783283 G C 45 80 BRCA TCGA-E2-A152 MANBA SNP Missense_Mutation 4 103590198 C G 24 84 BRCA TCGA-E2-A152 KIAA1109 SNP Missense_Mutation 4 123230553 G T 45 88 BRCA TCGA-E2-A152 BOD1L1 SNP Missense_Mutation 4 13579099 C G 32 70 BRCA TCGA-E2-A152 PCDH18 SNP Missense_Mutation 4 138451370 C T 29 100 BRCA TCGA-E2-A152 GALNTL6 DEL In_Frame_Del 4 173961139 AGA - 11 90 BRCA TCGA-E2-A152 CCDC158 SNP Missense_Mutation 4 77304840 G C 36 51 BRCA TCGA-E2-A152 SHROOM3 SNP Missense_Mutation 4 77476816 G A 45 90 BRCA TCGA-E2-A152 SHROOM3 SNP Missense_Mutation 4 77676338 C T 19 36 BRCA TCGA-E2-A152 SPARCL1 SNP Nonsense_Mutation 4 88415072 G A 46 76 BRCA TCGA-E2-A152 PCDHGA3 SNP Missense_Mutation 5 140724883 G T 41 100 BRCA TCGA-E2-A152 PPARGC1B SNP Missense_Mutation 5 149206414 C T 31 43 BRCA TCGA-E2-A152 UBTD2 SNP Missense_Mutation 5 171639034 G A 37 98 BRCA TCGA-E2-A152 TARS SNP Missense_Mutation 5 33459816 G A 33 100 BRCA TCGA-E2-A152 RICTOR SNP Silent 5 38944601 G C 45 45 BRCA TCGA-E2-A152 ITGA2 SNP Missense_Mutation 5 52366060 G C 33 54 BRCA TCGA-E2-A152 TPPP SNP Missense_Mutation 5 666230 G A 33 94 BRCA TCGA-E2-A152 CDK19 SNP Missense_Mutation 6 110944522 C A 18 99 BRCA TCGA-E2-A152 HIST1H2BC SNP Nonsense_Mutation 6 26123904 C A 31 100 BRCA TCGA-E2-A152 HIST1H2AD SNP Missense_Mutation 6 26199108 C G 29 93 BRCA TCGA-E2-A152 HIST1H4I SNP Silent 6 27107360 C G 29 51 BRCA TCGA-E2-A152 RIPK1 SNP Missense_Mutation 6 3081330 G A 45 99 BRCA TCGA-E2-A152 EYS SNP Missense_Mutation 6 65531584 G A 45 50 BRCA TCGA-E2-A152 COL12A1 SNP Silent 6 75814970 G A 46 52 BRCA TCGA-E2-A152 COL12A1 SNP Missense_Mutation 6 75892984 C G 32 67 BRCA TCGA-E2-A152 LOC100289653 SNP Missense_Mutation 6 87607258 G C 33 54 BRCA TCGA-E2-A152 MUC17 SNP Missense_Mutation 7 100681335 C T 29 63 BRCA TCGA-E2-A152 MUC17 SNP Silent 7 100683508 C T 23 49 BRCA TCGA-E2-A152 TSGA13 SNP Missense_Mutation 7 130364154 G C 45 57 BRCA TCGA-E2-A152 AGBL3 SNP Missense_Mutation 7 134672706 G A 41 72 BRCA TCGA-E2-A152 NUP205 SNP Missense_Mutation 7 135272700 C G 32 100 BRCA TCGA-E2-A152 PIP SNP Missense_Mutation 7 142836690 C G 29 40 BRCA TCGA-E2-A152 ZNF786 SNP Missense_Mutation 7 148767652 C T 21 89 BRCA TCGA-E2-A152 PLEKHA8 SNP Silent 7 30088947 C G 32 47 BRCA TCGA-E2-A152 POU6F2 SNP Silent 7 39125579 G A 46 74 BRCA TCGA-E2-A152 LIMK1 SNP Missense_Mutation 7 73511431 C T 21 92 BRCA TCGA-E2-A152 CSMD1 SNP Silent 8 3057296 G A 33 60 BRCA TCGA-E2-A152 GRIN3A SNP Silent 9 104499593 G A 37 53 BRCA TCGA-E2-A152 ZNF462 SNP Silent 9 109689136 G A 45 84 BRCA TCGA-E2-A152 SARDH SNP Missense_Mutation 9 136595296 C T 25 96 BRCA TCGA-E2-A152 TPRN SNP Silent 9 140093982 G T 37 42 BRCA TCGA-E2-A152 FREM1 SNP Missense_Mutation 9 14851512 C G 30 100 BRCA TCGA-E2-A152 LOC642406 SNP Silent 9 40582302 G A 45 62 BRCA TCGA-E2-A152 FAM75D1 SNP Missense_Mutation 9 84607526 G A 40 35 BRCA TCGA-E2-A152 BICD2 SNP Silent 9 95482669 G A 37 39 BRCA TCGA-E2-A153 SYCP1 SNP Missense_Mutation 1 115454161 C T 29 51 BRCA TCGA-E2-A153 OPRD1 SNP Missense_Mutation 1 29189416 C T 31 91 BRCA TCGA-E2-A153 TLL2 SNP Missense_Mutation 10 98129947 C T 23 81 BRCA TCGA-E2-A153 CAT SNP Missense_Mutation 11 34492955 C T 27 59 BRCA TCGA-E2-A153 C12orf40 SNP Missense_Mutation 12 40044140 T G 52 57 BRCA TCGA-E2-A153 TRMT5 SNP Nonsense_Mutation 14 61444282 G A 39 58 BRCA TCGA-E2-A153 MAPKBP1 SNP Silent 15 42115928 C T 30 55 BRCA TCGA-E2-A153 CBFB DEL Frame_Shift_Del 16 67070600 GA - 41 93 BRCA TCGA-E2-A153 RLTPR SNP Silent 16 67685827 C T 17 48 BRCA TCGA-E2-A153 POTEF SNP Missense_Mutation 2 130832185 G A 38 53 BRCA TCGA-E2-A153 ZNF41 SNP Missense_Mutation 23 47326822 C A 26 58 BRCA TCGA-E2-A153 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-E2-A153 ADAMTS9 SNP Missense_Mutation 3 64666931 G A 38 67 BRCA TCGA-E2-A153 EPHA5 SNP Missense_Mutation 4 66201815 C T 19 100 BRCA TCGA-E2-A153 CCDC112 SNP Missense_Mutation 5 114620509 G A 40 64 BRCA TCGA-E2-A153 GABRB2 SNP Missense_Mutation 5 160753392 C A 31 67 BRCA TCGA-E2-A153 MTMR12 SNP Silent 5 32233993 G C 39 51 BRCA TCGA-E2-A153 MUT SNP Missense_Mutation 6 49416584 T C 57 50 BRCA TCGA-E2-A153 UBE3D SNP Missense_Mutation 6 83667047 C T 19 35 BRCA TCGA-E2-A153 KCNQ3 SNP Missense_Mutation 8 133141532 T C 58 66 BRCA TCGA-E2-A153 ENSG00000237029 SNP Missense_Mutation 8 86556497 G A 39 48 BRCA TCGA-E2-A153 DBH SNP Missense_Mutation 9 136508616 G A 40 44 BRCA TCGA-E2-A153 CACNA1B SNP Silent 9 140952286 G A 38 12 BRCA TCGA-E2-A154 PGLYRP3 SNP Missense_Mutation 1 153270481 C A 22 60 BRCA TCGA-E2-A154 PRRX1 SNP Missense_Mutation 1 170695377 G A 37 95 BRCA TCGA-E2-A154 PHYHIPL DEL In_Frame_Del 10 60994219 AACAAGAAAGAG - 5 92 BRCA TCGA-E2-A154 DUPD1 SNP Nonsense_Mutation 10 76818229 G T 45 53 BRCA TCGA-E2-A154 SLIT1 SNP Missense_Mutation 10 98816176 G T 41 77 BRCA TCGA-E2-A154 IFITM3 SNP Missense_Mutation 11 320790 G T 33 52 BRCA TCGA-E2-A154 OR5T2 SNP Missense_Mutation 11 56000198 G A 34 85 BRCA TCGA-E2-A154 OR5AR1 SNP Silent 11 56431680 C T 29 60 BRCA TCGA-E2-A154 IRAK3 SNP Missense_Mutation 12 66641568 T G 52 73 BRCA TCGA-E2-A154 CLYBL SNP Missense_Mutation 13 100518535 C T 23 64 BRCA TCGA-E2-A154 FBXL3 SNP Missense_Mutation 13 77595895 C G 17 51 BRCA TCGA-E2-A154 CHD8 SNP Silent 14 21859709 C A 21 60 BRCA TCGA-E2-A154 CMTM5 SNP Missense_Mutation 14 23848056 G T 46 59 BRCA TCGA-E2-A154 ENSG00000185864 SNP Nonsense_Mutation 16 21854855 G A 37 46 BRCA TCGA-E2-A154 MEGF8 SNP Silent 19 42862378 G A 47 52 BRCA TCGA-E2-A154 NOVA2 SNP Missense_Mutation 19 46457123 C T 31 95 BRCA TCGA-E2-A154 CATSPERD SNP Missense_Mutation 19 5744496 C T 27 52 BRCA TCGA-E2-A154 SLC40A1 SNP Missense_Mutation 2 190428591 A C 7 81 BRCA TCGA-E2-A154 ALS2CR11 DEL Frame_Shift_Del 2 202358909 T - 56 50 BRCA TCGA-E2-A154 E2F1 SNP Missense_Mutation 20 32267640 G A 38 63 BRCA TCGA-E2-A154 RUNX1 DEL Frame_Shift_Del 21 36206729 AGGGTTAA - 11 60 BRCA TCGA-E2-A154 RNF113A SNP Missense_Mutation 23 119005097 C A 32 53 BRCA TCGA-E2-A154 OCRL SNP Missense_Mutation 23 128692644 G T 45 73 BRCA TCGA-E2-A154 DMD SNP Missense_Mutation 23 31152232 G T 41 55 BRCA TCGA-E2-A154 UBA1 SNP Missense_Mutation 23 47065655 A T 8 84 BRCA TCGA-E2-A154 CCNB3 SNP Missense_Mutation 23 50037884 C G 21 59 BRCA TCGA-E2-A154 SMC1A SNP Missense_Mutation 23 53439174 C T 23 80 BRCA TCGA-E2-A154 PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA TCGA-E2-A154 SLMAP SNP Missense_Mutation 3 57875847 A G 16 42 BRCA TCGA-E2-A154 PPID SNP Missense_Mutation 4 159644428 A C 10 51 BRCA TCGA-E2-A154 PCDHGA7 SNP Silent 5 140764680 G A 38 35 BRCA TCGA-E2-A154 ERVFRD-1 SNP Missense_Mutation 6 11103979 G T 40 44 BRCA TCGA-E2-A154 C2 SNP Silent 6 31896624 G A 43 52 BRCA TCGA-E2-A154 CGA SNP Silent 6 87796031 C T 31 49 BRCA TCGA-E2-A154 SLC12A9 SNP Silent 7 100456724 C T 31 29 BRCA TCGA-E2-A154 VPS13B SNP Missense_Mutation 8 100883111 G A 48 95 BRCA TCGA-E2-A154 KLHL38 SNP Missense_Mutation 8 124664638 C T 25 59 BRCA TCGA-E2-A154 VPS28 SNP Missense_Mutation 8 145649475 C T 27 74 BRCA TCGA-E2-A154 RP1 SNP Missense_Mutation 8 55533917 C T 23 76 BRCA TCGA-E2-A154 C9orf9 SNP Silent 9 135763881 G A 35 50 BRCA TCGA-E2-A154 PGM5 SNP Missense_Mutation 9 70993224 G T 46 64 BRCA TCGA-E2-A155 OTUD7B SNP Missense_Mutation 1 149939428 C A 26 82 BRCA TCGA-E2-A155 ARHGEF11 SNP Missense_Mutation 1 156907126 C T 27 47 BRCA TCGA-E2-A155 CD1A SNP Nonsense_Mutation 1 158225973 C T 29 42 BRCA TCGA-E2-A155 TROVE2 SNP Missense_Mutation 1 193045697 G T 46 93 BRCA TCGA-E2-A155 PLEKHA6 SNP Missense_Mutation 1 204214761 C T 30 92 BRCA TCGA-E2-A155 RYR2 SNP Missense_Mutation 1 237863760 C G 18 52 BRCA TCGA-E2-A155 ZNF684 SNP Silent 1 41006377 C T 32 53 BRCA TCGA-E2-A155 SGIP1 SNP Missense_Mutation 1 67206375 C A 30 86 BRCA TCGA-E2-A155 PHYH SNP Silent 10 13325695 G T 39 55 BRCA TCGA-E2-A155 GATA3 INS Frame_Shift_Ins 10 8111501 - A 41 76 BRCA TCGA-E2-A155 RBM19 SNP Missense_Mutation 12 114380175 C T 23 80 BRCA TCGA-E2-A155 KIAA0528 SNP Missense_Mutation 12 22677465 C T 31 85 BRCA TCGA-E2-A155 C14orf80 SNP Silent 14 105965157 G T 38 20 BRCA TCGA-E2-A155 OR11G2 SNP Silent 14 20665593 G A 42 48 BRCA TCGA-E2-A155 OR4F6 SNP Silent 15 102346324 C T 21 48 BRCA TCGA-E2-A155 OR4F15 SNP Missense_Mutation 15 102358597 G A 45 80 BRCA TCGA-E2-A155 NPAP1 SNP Missense_Mutation 15 24921813 G T 40 51 BRCA TCGA-E2-A155 TTBK2 SNP Splice_site 15 43122137 G A 39 100 BRCA TCGA-E2-A155 MRPS11 SNP Silent 15 89020270 G A 47 59 BRCA TCGA-E2-A155 ZNF646 SNP Nonsense_Mutation 16 31092215 C T 29 64 BRCA TCGA-E2-A155 ZNF597 SNP Nonsense_Mutation 16 3486606 C A 32 51 BRCA TCGA-E2-A155 WDR90 SNP Silent 16 708527 G A 46 53 BRCA TCGA-E2-A155 PPM1E SNP Missense_Mutation 17 57057854 C T 25 65 BRCA TCGA-E2-A155 CACNG5 SNP Missense_Mutation 17 64875098 C T 27 74 BRCA TCGA-E2-A155 TP53 SNP Splice_Site 17 7579591 C G 20 64 BRCA TCGA-E2-A155 USP36 SNP Nonsense_Mutation 17 76831512 G A 38 73 BRCA TCGA-E2-A155 DSC2 SNP Missense_Mutation 18 28654837 A G 3 81 BRCA TCGA-E2-A155 KCNG2 SNP Missense_Mutation 18 77659086 T C 59 86 BRCA TCGA-E2-A155 PSG3 SNP Silent 19 43233453 G A 37 47 BRCA TCGA-E2-A155 HIF3A SNP Missense_Mutation 19 46825069 C T 23 73 BRCA TCGA-E2-A155 FUT5 SNP Missense_Mutation 19 5866890 C T 19 63 BRCA TCGA-E2-A155 SATB2 SNP Missense_Mutation 2 200137283 C T 27 82 BRCA TCGA-E2-A155 ATIC DEL Frame_Shift_Del 2 216209567 CT - 20 52 BRCA TCGA-E2-A155 GLB1L SNP Silent 2 220102662 C T 21 87 BRCA TCGA-E2-A155 NLRC4 SNP Nonsense_Mutation 2 32476278 G A 45 62 BRCA TCGA-E2-A155 ZNF217 SNP Missense_Mutation 20 52193283 A G 7 42 BRCA TCGA-E2-A155 SLC5A1 SNP Silent 22 32479101 G A 39 29 BRCA TCGA-E2-A155 CENPI SNP Silent 23 100382636 G A 33 50 BRCA TCGA-E2-A155 ARHGAP6 SNP Silent 23 11162146 C T 19 49 BRCA TCGA-E2-A155 MTMR8 SNP Missense_Mutation 23 63488612 C T 17 53 BRCA TCGA-E2-A155 RUVBL1 SNP Silent 3 127800192 G A 46 51 BRCA TCGA-E2-A155 ATR SNP Missense_Mutation 3 142176483 T C 52 48 BRCA TCGA-E2-A155 NAALADL2 SNP Missense_Mutation 3 175042047 C G 26 50 BRCA TCGA-E2-A155 DGKG SNP Missense_Mutation 3 185990120 G C 36 95 BRCA TCGA-E2-A155 CRYBG3 SNP Missense_Mutation 3 97614915 C T 23 70 BRCA TCGA-E2-A155 MFAP3L SNP Missense_Mutation 4 170912804 C T 18 97 BRCA TCGA-E2-A155 CRMP1 SNP Splice_site 4 5837643 G A 37 95 BRCA TCGA-E2-A155 MRFAP1L1 SNP Silent 4 6711321 A G 7 36 BRCA TCGA-E2-A155 GIN1 SNP Missense_Mutation 5 102432359 C G 32 83 BRCA TCGA-E2-A155 HDAC3 SNP Missense_Mutation 5 141005299 G A 36 100 BRCA TCGA-E2-A155 CREBRF SNP Missense_Mutation 5 172517553 C G 32 100 BRCA TCGA-E2-A155 CMYA5 SNP Missense_Mutation 5 79028598 C T 29 79 BRCA TCGA-E2-A155 ENSG00000225705 SNP Missense_Mutation 7 48886213 G T 44 51 BRCA TCGA-E2-A155 AKAP9 DEL Frame_Shift_Del 7 91603204 T - 55 35 BRCA TCGA-E2-A155 LYN SNP Missense_Mutation 8 56912024 G A 47 99 BRCA TCGA-E2-A155 LOC645969 SNP Missense_Mutation 9 6278962 T C 51 72 BRCA TCGA-E2-A156 CD34 SNP Missense_Mutation 1 208062812 G T 48 58 BRCA TCGA-E2-A156 TCEB3 INS Frame_Shift_Ins 1 24078169 - C 46 44 BRCA TCGA-E2-A156 APLNR SNP Missense_Mutation 11 57003857 C T 19 49 BRCA TCGA-E2-A156 DAK SNP Missense_Mutation 11 61105416 T A 54 56 BRCA TCGA-E2-A156 ZNF215 SNP Nonsense_Mutation 11 6964815 G T 41 46 BRCA TCGA-E2-A156 ANO2 SNP Missense_Mutation 12 5936961 G A 42 59 BRCA TCGA-E2-A156 FREM2 SNP Silent 13 39266455 C T 31 52 BRCA TCGA-E2-A156 PEAK1 SNP Missense_Mutation 15 77406833 G A 39 57 BRCA TCGA-E2-A156 CTCF SNP Nonsense_Mutation 16 67644796 G T 41 94 BRCA TCGA-E2-A156 MAP2K4 DEL Frame_Shift_Del 17 11984840 CAGTTAAAGTAGGTGAT - 25 98 BRCA TCGA-E2-A156 NCOR1 DEL Frame_Shift_Del 17 16068342 CGATCTACACG - 31 97 BRCA TCGA-E2-A156 HDLBP SNP Missense_Mutation 2 242202328 G A 43 89 BRCA TCGA-E2-A156 PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-E2-A156 TRIM71 SNP Missense_Mutation 3 32933232 G A 39 99 BRCA TCGA-E2-A156 ADAM19 SNP Missense_Mutation 5 156945842 C G 29 92 BRCA TCGA-E2-A156 RGS14 SNP Silent 5 176795135 G T 40 51 BRCA TCGA-E2-A156 MAP3K1 DEL Frame_Shift_Del 5 56168483 G - 33 95 BRCA TCGA-E2-A156 BCLAF1 SNP Nonsense_Mutation 6 136599544 G A 40 73 BRCA TCGA-E2-A156 DSP SNP Missense_Mutation 6 7583485 G T 43 99 BRCA TCGA-E2-A156 HSF1 SNP Missense_Mutation 8 145535048 C G 30 56 BRCA TCGA-E2-A156 CEP78 SNP Missense_Mutation 9 80856675 T C 55 84 BRCA TCGA-E2-A158 MASP2 SNP Missense_Mutation 1 11107016 G A 39 57 BRCA TCGA-E2-A158 ADAM30 SNP Missense_Mutation 1 120438621 C A 21 50 BRCA TCGA-E2-A158 CHD1L SNP Missense_Mutation 1 146759365 G C 37 89 BRCA TCGA-E2-A158 LOC100132108 SNP Silent 1 155815738 G A 35 76 BRCA TCGA-E2-A158 IQGAP3 SNP Missense_Mutation 1 156498803 C G 24 58 BRCA TCGA-E2-A158 VANGL2 SNP Missense_Mutation 1 160388826 C T 19 91 BRCA TCGA-E2-A158 POU2F1 SNP Missense_Mutation 1 167367365 T G 56 50 BRCA TCGA-E2-A158 TDRD5 SNP Splice_site 1 179609514 G A 44 52 BRCA TCGA-E2-A158 ASPM SNP Missense_Mutation 1 197073197 C A 25 51 BRCA TCGA-E2-A158 PTPN7 SNP Missense_Mutation 1 202119541 C G 26 96 BRCA TCGA-E2-A158 LRRN2 SNP Missense_Mutation 1 204588156 C T 23 68 BRCA TCGA-E2-A158 CSMD2 SNP Missense_Mutation 1 34254306 C A 24 93 BRCA TCGA-E2-A158 IPO13 SNP Silent 1 44422562 T C 51 51 BRCA TCGA-E2-A158 PTPRE SNP Missense_Mutation 10 129875909 G A 37 81 BRCA TCGA-E2-A158 SLC29A3 SNP Missense_Mutation 10 73111428 T C 64 88 BRCA TCGA-E2-A158 PLCE1 SNP Missense_Mutation 10 96030357 A C 5 91 BRCA TCGA-E2-A158 ARFGAP2 SNP Silent 11 47193042 T G 57 41 BRCA TCGA-E2-A158 LETMD1 SNP Missense_Mutation 12 51450235 G A 42 88 BRCA TCGA-E2-A158 NACA SNP Missense_Mutation 12 57110900 G T 41 48 BRCA TCGA-E2-A158 MDM2 SNP Missense_Mutation 12 69202261 G C 44 69 BRCA TCGA-E2-A158 ACSM4 SNP Missense_Mutation 12 7475135 G T 36 56 BRCA TCGA-E2-A158 C12orf55 SNP Missense_Mutation 12 97045441 C A 20 50 BRCA TCGA-E2-A158 MYCBP2 SNP Missense_Mutation 13 77644815 A G 8 88 BRCA TCGA-E2-A158 UGGT2 SNP Silent 13 96547535 A G 4 52 BRCA TCGA-E2-A158 FURIN SNP Silent 15 91423399 G A 47 69 BRCA TCGA-E2-A158 NOMO3 SNP Missense_Mutation 16 16349580 G A 40 63 BRCA TCGA-E2-A158 AKTIP SNP Missense_Mutation 16 53534164 G C 35 97 BRCA TCGA-E2-A158 HLF SNP Missense_Mutation 17 53398125 C G 31 67 BRCA TCGA-E2-A158 TP53 SNP Missense_Mutation 17 7578265 A G 12 68 BRCA TCGA-E2-A158 ASXL3 SNP Missense_Mutation 18 31320313 T A 49 88 BRCA TCGA-E2-A158 LOXHD1 SNP Missense_Mutation 18 44157812 C T 31 100 BRCA TCGA-E2-A158 SERPINB3 SNP Missense_Mutation 18 61325830 G C 44 86 BRCA TCGA-E2-A158 SAMD1 SNP Silent 19 14199331 C T 17 52 BRCA TCGA-E2-A158 OR10H2 SNP Missense_Mutation 19 15838966 C T 19 64 BRCA TCGA-E2-A158 SLC5A5 SNP Missense_Mutation 19 17985316 G T 42 71 BRCA TCGA-E2-A158 ZNF100 SNP Missense_Mutation 19 21909523 G C 48 61 BRCA TCGA-E2-A158 ZNF181 SNP Missense_Mutation 19 35232115 G T 47 55 BRCA TCGA-E2-A158 HRC SNP Missense_Mutation 19 49658427 G T 43 60 BRCA TCGA-E2-A158 FLT3LG DEL Frame_Shift_Del 19 49978980 GGGACTCAGT - 39 36 BRCA TCGA-E2-A158 PEG3 SNP Missense_Mutation 19 57326308 A C 6 83 BRCA TCGA-E2-A158 GPD2 SNP Missense_Mutation 2 157407221 A G 3 80 BRCA TCGA-E2-A158 CHRNA1 SNP Silent 2 175613362 G A 37 30 BRCA TCGA-E2-A158 TTN SNP Missense_Mutation 2 179585241 T G 52 50 BRCA TCGA-E2-A158 TTN SNP Missense_Mutation 2 179592849 A C 3 54 BRCA TCGA-E2-A158 COL5A2 SNP Missense_Mutation 2 189928732 C G 24 94 BRCA TCGA-E2-A158 STAT4 SNP Missense_Mutation 2 191900935 C T 21 100 BRCA TCGA-E2-A158 GPR35 SNP Missense_Mutation 2 241569563 C T 26 69 BRCA TCGA-E2-A158 SPAST SNP Missense_Mutation 2 32379525 A G 14 80 BRCA TCGA-E2-A158 PPM1B SNP Missense_Mutation 2 44457678 G C 34 85 BRCA TCGA-E2-A158 TMEM18 SNP Missense_Mutation 2 675561 A T 7 61 BRCA TCGA-E2-A158 C2orf78 SNP Missense_Mutation 2 74042839 G C 45 53 BRCA TCGA-E2-A158 SLC4A5 SNP Missense_Mutation 2 74474219 T A 58 57 BRCA TCGA-E2-A158 TRIM43 SNP Missense_Mutation 2 96259815 G C 46 72 BRCA TCGA-E2-A158 CPXM1 SNP Missense_Mutation 20 2775057 G A 38 66 BRCA TCGA-E2-A158 PLAGL2 DEL In_Frame_Del 20 30785163 GGTCACAGG - 47 100 BRCA TCGA-E2-A158 HRH3 SNP Missense_Mutation 20 60794857 A T 11 71 BRCA TCGA-E2-A158 ETS2 SNP Missense_Mutation 21 40188980 C T 18 54 BRCA TCGA-E2-A158 COL18A1 INS In_Frame_Ins 21 46876470 - GTCTGC 7 19 BRCA TCGA-E2-A158 IL2RB SNP Splice_Site 22 37540124 C A 18 63 BRCA TCGA-E2-A158 IGSF1 SNP Nonsense_Mutation 23 130408820 C T 26 73 BRCA TCGA-E2-A158 PHEX SNP Splice_Site 23 22208620 G A 40 80 BRCA TCGA-E2-A158 IGBP1 SNP Missense_Mutation 23 69353826 C T 23 80 BRCA TCGA-E2-A158 TBC1D23 SNP Missense_Mutation 3 100015073 C G 32 98 BRCA TCGA-E2-A158 CD86 SNP Missense_Mutation 3 121828123 C G 22 35 BRCA TCGA-E2-A158 KIAA1109 SNP Missense_Mutation 4 123207765 C T 17 73 BRCA TCGA-E2-A158 MAB21L2 SNP Silent 4 151504781 G C 47 66 BRCA TCGA-E2-A158 CLRN2 SNP Missense_Mutation 4 17528460 A G 8 50 BRCA TCGA-E2-A158 SCFD2 SNP Missense_Mutation 4 53752015 T A 53 66 BRCA TCGA-E2-A158 FRAS1 SNP Missense_Mutation 4 79340212 A T 4 45 BRCA TCGA-E2-A158 PCDHGA5 SNP Missense_Mutation 5 140746002 G C 46 66 BRCA TCGA-E2-A158 RNF130 SNP Silent 5 179440193 C A 31 43 BRCA TCGA-E2-A158 ARID1B SNP Missense_Mutation 6 157522383 G A 35 73 BRCA TCGA-E2-A158 RBM24 SNP Missense_Mutation 6 17283067 G C 35 98 BRCA TCGA-E2-A158 CUL7 SNP Splice_Site 6 43017144 C T 18 62 BRCA TCGA-E2-A158 CNTNAP2 SNP Nonsense_Mutation 7 146829361 G T 41 95 BRCA TCGA-E2-A158 SNX10 SNP Missense_Mutation 7 26412173 C G 17 64 BRCA TCGA-E2-A158 LOC100128031 SNP Missense_Mutation 7 73245517 C G 23 20 BRCA TCGA-E2-A158 EFR3A SNP Silent 8 132966110 A G 1 61 BRCA TCGA-E2-A158 C9orf84 SNP Missense_Mutation 9 114464479 C A 26 67 BRCA TCGA-E2-A158 B4GALT1 SNP Missense_Mutation 9 33116073 A G 15 89 BRCA TCGA-E2-A159 HIST2H3D SNP Missense_Mutation 1 149785205 G A 37 93 BRCA TCGA-E2-A159 ECM1 SNP Silent 1 150484178 C T 30 61 BRCA TCGA-E2-A159 HORMAD1 SNP Missense_Mutation 1 150684035 G C 43 73 BRCA TCGA-E2-A159 TCHH SNP Silent 1 152083125 G C 41 49 BRCA TCGA-E2-A159 TPM3 SNP Missense_Mutation 1 154163705 T A 50 92 BRCA TCGA-E2-A159 TRIM46 SNP Silent 1 155150660 C G 28 53 BRCA TCGA-E2-A159 IQGAP3 SNP Splice_site 1 156531792 G C 41 55 BRCA TCGA-E2-A159 CD1E SNP Missense_Mutation 1 158325653 C G 24 62 BRCA TCGA-E2-A159 OR10J1 SNP Silent 1 159409770 G C 45 51 BRCA TCGA-E2-A159 ARHGEF19 SNP Missense_Mutation 1 16525668 G A 45 65 BRCA TCGA-E2-A159 UBR4 SNP Missense_Mutation 1 19407923 C G 30 95 BRCA TCGA-E2-A159 LAMB3 SNP Silent 1 209803110 C T 23 13 BRCA TCGA-E2-A159 ARID4B SNP Missense_Mutation 1 235345497 C G 29 98 BRCA TCGA-E2-A159 OR2G3 SNP Silent 1 247769442 C G 29 50 BRCA TCGA-E2-A159 OR2T35 SNP Missense_Mutation 1 248801684 C G 29 48 BRCA TCGA-E2-A159 PUM1 SNP Missense_Mutation 1 31437562 G A 35 100 BRCA TCGA-E2-A159 ZMYM4 SNP Missense_Mutation 1 35873661 G C 45 59 BRCA TCGA-E2-A159 MACF1 SNP Silent 1 39797744 G A 45 45 BRCA TCGA-E2-A159 MACF1 SNP Missense_Mutation 1 39798309 G C 45 49 BRCA TCGA-E2-A159 AK5 SNP Missense_Mutation 1 77748056 G C 45 77 BRCA TCGA-E2-A159 CUBN SNP Missense_Mutation 10 16955917 G A 39 65 BRCA TCGA-E2-A159 TUBAL3 SNP Missense_Mutation 10 5436386 G T 41 68 BRCA TCGA-E2-A159 CDHR1 SNP Missense_Mutation 10 85962805 G A 41 67 BRCA TCGA-E2-A159 TNKS2 SNP Missense_Mutation 10 93572805 G A 45 100 BRCA TCGA-E2-A159 NPAT SNP Missense_Mutation 11 108031617 T C 56 73 BRCA TCGA-E2-A159 NPAT SNP Nonsense_Mutation 11 108032049 G C 45 81 BRCA TCGA-E2-A159 CCDC84 SNP Missense_Mutation 11 118885784 C G 32 91 BRCA TCGA-E2-A159 ANO9 SNP Silent 11 419605 C G 29 40 BRCA TCGA-E2-A159 ENSG00000231657 SNP Silent 11 557881 C T 29 61 BRCA TCGA-E2-A159 C11orf20 SNP Missense_Mutation 11 64068205 C G 19 44 BRCA TCGA-E2-A159 C11orf20 SNP Missense_Mutation 11 64072038 G A 41 50 BRCA TCGA-E2-A159 RBM14 SNP Nonsense_Mutation 11 66392812 C T 29 78 BRCA TCGA-E2-A159 SPTBN2 SNP Missense_Mutation 11 66468355 C T 27 95 BRCA TCGA-E2-A159 UVRAG SNP Missense_Mutation 11 75590926 C T 30 95 BRCA TCGA-E2-A159 THRSP SNP Missense_Mutation 11 77775298 T C 54 86 BRCA TCGA-E2-A159 MLXIP SNP Missense_Mutation 12 122516984 G C 33 61 BRCA TCGA-E2-A159 SLC15A5 SNP Missense_Mutation 12 16377519 C G 25 94 BRCA TCGA-E2-A159 TMTC1 SNP Silent 12 29709801 C T 30 44 BRCA TCGA-E2-A159 ACVR1B SNP Missense_Mutation 12 52377883 G T 45 100 BRCA TCGA-E2-A159 ACVR1B SNP Missense_Mutation 12 52380701 G C 33 58 BRCA TCGA-E2-A159 TARBP2 SNP Silent 12 53895943 C T 29 68 BRCA TCGA-E2-A159 OS9 SNP Missense_Mutation 12 58112055 G A 45 70 BRCA TCGA-E2-A159 PHB2 SNP Silent 12 7076337 C T 32 54 BRCA TCGA-E2-A159 NALCN SNP Missense_Mutation 13 102030929 C A 18 95 BRCA TCGA-E2-A159 RNF6 SNP Missense_Mutation 13 26793693 C T 32 93 BRCA TCGA-E2-A159 SLC7A1 SNP Silent 13 30091320 G A 33 51 BRCA TCGA-E2-A159 RB1 SNP Missense_Mutation 13 48955532 T A 64 70 BRCA TCGA-E2-A159 RB1 DEL Frame_Shift_Del 13 48955534 A - 15 69 BRCA TCGA-E2-A159 NFKBIA SNP Missense_Mutation 14 35873760 C T 31 91 BRCA TCGA-E2-A159 IVD SNP Nonsense_Mutation 15 40710373 C T 31 76 BRCA TCGA-E2-A159 TGM5 SNP Missense_Mutation 15 43545083 A G 13 86 BRCA TCGA-E2-A159 IGDCC3 SNP Missense_Mutation 15 65628154 C G 29 79 BRCA TCGA-E2-A159 MAP2K1 SNP Missense_Mutation 15 66774131 G A 41 100 BRCA TCGA-E2-A159 PKD1 SNP Silent 16 2140301 G C 45 61 BRCA TCGA-E2-A159 RLTPR SNP Silent 16 67682005 C T 31 56 BRCA TCGA-E2-A159 PRPF8 SNP Splice_site 17 1554097 C T 29 57 BRCA TCGA-E2-A159 GPR179 SNP Missense_Mutation 17 36482587 C T 32 58 BRCA TCGA-E2-A159 CASC3 SNP Missense_Mutation 17 38296935 G C 34 66 BRCA TCGA-E2-A159 OTOP2 SNP Silent 17 72926762 G C 45 46 BRCA TCGA-E2-A159 TP53 SNP Missense_Mutation 17 7578203 C T 17 96 BRCA TCGA-E2-A159 DNAH2 SNP Missense_Mutation 17 7667478 T G 56 38 BRCA TCGA-E2-A159 ZNF681 SNP Missense_Mutation 19 23926992 C G 32 60 BRCA TCGA-E2-A159 EML2 SNP Missense_Mutation 19 46128000 C A 22 91 BRCA TCGA-E2-A159 KLK15 SNP Missense_Mutation 19 51330233 G T 44 93 BRCA TCGA-E2-A159 SIGLEC7 SNP Missense_Mutation 19 51649165 C G 32 54 BRCA TCGA-E2-A159 CEACAM18 SNP Missense_Mutation 19 51983701 T A 60 42 BRCA TCGA-E2-A159 EPS8L1 SNP Missense_Mutation 19 55591557 G A 39 60 BRCA TCGA-E2-A159 PTPRH SNP Missense_Mutation 19 55716783 C T 30 44 BRCA TCGA-E2-A159 C2orf50 SNP Missense_Mutation 2 11284204 G C 33 59 BRCA TCGA-E2-A159 GREB1 SNP Missense_Mutation 2 11702668 C A 30 58 BRCA TCGA-E2-A159 TMEM37 SNP Silent 2 120194851 C A 30 49 BRCA TCGA-E2-A159 NCKAP5 SNP Silent 2 133636435 G T 38 44 BRCA TCGA-E2-A159 BAZ2B SNP Missense_Mutation 2 160257133 G C 36 96 BRCA TCGA-E2-A159 METTL5 SNP Missense_Mutation 2 170668867 C G 29 59 BRCA TCGA-E2-A159 MYT1L SNP Missense_Mutation 2 1805566 C G 32 99 BRCA TCGA-E2-A159 NT5C1B-RDH14 SNP Missense_Mutation 2 18757611 C G 29 62 BRCA TCGA-E2-A159 APOB SNP Missense_Mutation 2 21232419 C T 29 54 BRCA TCGA-E2-A159 ITSN2 SNP Missense_Mutation 2 24484608 C T 29 82 BRCA TCGA-E2-A159 CENPO SNP Nonsense_Mutation 2 25040616 C T 29 49 BRCA TCGA-E2-A159 SOX11 SNP Missense_Mutation 2 5833196 G T 37 91 BRCA TCGA-E2-A159 SFTPB SNP Missense_Mutation 2 85893784 C G 29 56 BRCA TCGA-E2-A159 C20orf26 SNP Nonsense_Mutation 20 20269469 C T 29 70 BRCA TCGA-E2-A159 SYCP2 SNP Missense_Mutation 20 58494610 G C 45 54 BRCA TCGA-E2-A159 NCAM2 SNP Silent 21 22804504 G A 39 21 BRCA TCGA-E2-A159 ERG SNP Missense_Mutation 21 39817464 C T 29 98 BRCA TCGA-E2-A159 PCNT SNP Missense_Mutation 21 47851969 A G 11 59 BRCA TCGA-E2-A159 UPB1 SNP Silent 22 24919738 C T 29 61 BRCA TCGA-E2-A159 DMC1 SNP Missense_Mutation 22 38933603 G A 36 79 BRCA TCGA-E2-A159 FAM83F SNP Missense_Mutation 22 40425538 C A 32 62 BRCA TCGA-E2-A159 DOCK11 SNP Missense_Mutation 23 117679991 C T 32 89 BRCA TCGA-E2-A159 ZNF75D SNP Missense_Mutation 23 134427939 A C 3 54 BRCA TCGA-E2-A159 SAGE1 SNP Silent 23 134995026 C G 29 50 BRCA TCGA-E2-A159 BRS3 SNP Missense_Mutation 23 135570328 G T 45 72 BRCA TCGA-E2-A159 CXorf19 SNP Missense_Mutation 23 138444474 G T 34 56 BRCA TCGA-E2-A159 AKAP17A SNP Missense_Mutation 23 1712954 C T 19 62 BRCA TCGA-E2-A159 MAGEB10 SNP Missense_Mutation 23 27839536 C T 32 35 BRCA TCGA-E2-A159 MAGEB1 SNP Missense_Mutation 23 30269315 C A 20 47 BRCA TCGA-E2-A159 PCTK1 SNP Nonsense_Mutation 23 47085540 G A 41 49 BRCA TCGA-E2-A159 TIGIT SNP Missense_Mutation 3 114014431 C T 32 62 BRCA TCGA-E2-A159 XIRP1 SNP Missense_Mutation 3 39228203 G C 33 60 BRCA TCGA-E2-A159 GTDC2 SNP Silent 3 43122777 C T 29 57 BRCA TCGA-E2-A159 SLC26A6 SNP Splice_Site 3 48667870 C A 18 99 BRCA TCGA-E2-A159 BANK1 SNP Missense_Mutation 4 102946639 C A 20 65 BRCA TCGA-E2-A159 PRDM5 SNP Silent 4 121616407 C T 29 56 BRCA TCGA-E2-A159 PRMT10 SNP Missense_Mutation 4 148575483 G C 33 75 BRCA TCGA-E2-A159 C1QTNF7 SNP Missense_Mutation 4 15444327 C G 32 68 BRCA TCGA-E2-A159 TMA16 SNP Silent 4 164436573 G A 37 40 BRCA TCGA-E2-A159 WDR17 SNP Splice_Site 4 177049888 G C 33 95 BRCA TCGA-E2-A159 CPZ SNP Missense_Mutation 4 8607783 C G 32 58 BRCA TCGA-E2-A159 PCDHB1 SNP Silent 5 140431703 C T 19 44 BRCA TCGA-E2-A159 TRIO SNP Missense_Mutation 5 14399162 T C 61 92 BRCA TCGA-E2-A159 SPARC SNP Silent 5 151047100 G C 45 51 BRCA TCGA-E2-A159 G3BP1 SNP Missense_Mutation 5 151178806 C G 32 97 BRCA TCGA-E2-A159 FAM114A2 SNP Missense_Mutation 5 153409057 G C 45 81 BRCA TCGA-E2-A159 ATP10B SNP Missense_Mutation 5 160076224 C T 19 83 BRCA TCGA-E2-A159 RANBP17 SNP Missense_Mutation 5 170669806 G A 33 86 BRCA TCGA-E2-A159 DOK3 SNP Missense_Mutation 5 176931433 C G 29 56 BRCA TCGA-E2-A159 COL23A1 SNP Missense_Mutation 5 177669088 C G 32 73 BRCA TCGA-E2-A159 PDE4D SNP Missense_Mutation 5 58270700 C G 32 96 BRCA TCGA-E2-A159 TRIM23 SNP Missense_Mutation 5 64892251 G C 45 100 BRCA TCGA-E2-A159 LOC100131573 SNP Silent 5 93929057 C G 32 48 BRCA TCGA-E2-A159 TTC37 SNP Missense_Mutation 5 94863730 C G 19 53 BRCA TCGA-E2-A159 AIM1 SNP Missense_Mutation 6 106967869 G C 41 48 BRCA TCGA-E2-A159 SLC2A12 SNP Silent 6 134349970 G T 47 51 BRCA TCGA-E2-A159 UTRN SNP Splice_Site 6 144761487 G C 33 98 BRCA TCGA-E2-A159 RAET1G SNP Silent 6 150240756 C T 29 55 BRCA TCGA-E2-A159 SYNE1 SNP Silent 6 152599233 G T 45 57 BRCA TCGA-E2-A159 ARID1B SNP Missense_Mutation 6 157528895 G A 33 69 BRCA TCGA-E2-A159 KIF13A SNP Missense_Mutation 6 17837174 C T 27 100 BRCA TCGA-E2-A159 HIST1H2BC SNP Missense_Mutation 6 26123759 G A 41 86 BRCA TCGA-E2-A159 NOTCH4 SNP Missense_Mutation 6 32190561 C G 29 71 BRCA TCGA-E2-A159 WDR46 SNP Silent 6 33247580 G A 33 88 BRCA TCGA-E2-A159 ZNF318 SNP Silent 6 43306894 A C 15 45 BRCA TCGA-E2-A159 SLC35B2 SNP Missense_Mutation 6 44223268 C T 29 100 BRCA TCGA-E2-A159 CDC5L SNP Missense_Mutation 6 44358031 G A 45 100 BRCA TCGA-E2-A159 TFR2 SNP Splice_Site 7 100238598 C A 18 77 BRCA TCGA-E2-A159 LAMB1 SNP Nonsense_Mutation 7 107594139 G T 37 49 BRCA TCGA-E2-A159 FASTK SNP Silent 7 150774081 G A 33 72 BRCA TCGA-E2-A159 MACC1 SNP Missense_Mutation 7 20199737 G C 45 72 BRCA TCGA-E2-A159 BAIAP2L1 SNP Silent 7 97937087 G C 45 36 BRCA TCGA-E2-A159 STAG3 SNP Nonsense_Mutation 7 99799582 C A 31 64 BRCA TCGA-E2-A159 SYBU SNP Missense_Mutation 8 110587700 C T 18 44 BRCA TCGA-E2-A159 LOC100131552 SNP Silent 8 123715489 G A 45 59 BRCA TCGA-E2-A159 TSNARE1 SNP Missense_Mutation 8 143356182 T G 54 65 BRCA TCGA-E2-A159 SCARA3 SNP Missense_Mutation 8 27528720 C T 29 63 BRCA TCGA-E2-A159 PENK SNP Silent 8 57354365 C T 23 51 BRCA TCGA-E2-A159 DPY19L4 SNP Missense_Mutation 8 95751734 G C 34 95 BRCA TCGA-E2-A159 CORO2A SNP Missense_Mutation 9 100890527 C T 32 80 BRCA TCGA-E2-A159 TXNDC8 SNP Missense_Mutation 9 113065819 C G 32 74 BRCA TCGA-E2-A159 NPDC1 SNP Missense_Mutation 9 139934476 C G 29 63 BRCA TCGA-E2-A159 MAN1B1 SNP Missense_Mutation 9 139995528 G C 45 99 BRCA TCGA-E2-A159 NFIB SNP Missense_Mutation 9 14146751 C G 32 90 BRCA TCGA-E2-A159 RFX3 SNP Missense_Mutation 9 3263041 G T 40 100 BRCA TCGA-E2-A159 FAM22F SNP Missense_Mutation 9 97082696 C T 29 47 BRCA TCGA-E2-A15A EPHA2 SNP Missense_Mutation 1 16464453 C T 30 80 BRCA TCGA-E2-A15A RAB3GAP2 SNP Missense_Mutation 1 220359016 A G 13 73 BRCA TCGA-E2-A15A GTPBP4 SNP Splice_site 10 1038429 G T 41 88 BRCA TCGA-E2-A15A SORCS1 SNP Nonsense_Mutation 10 108380241 C T 21 84 BRCA TCGA-E2-A15A TACC2 SNP Missense_Mutation 10 123845245 C T 21 67 BRCA TCGA-E2-A15A SRGN SNP Missense_Mutation 10 70863653 G A 40 55 BRCA TCGA-E2-A15A REXO2 SNP Missense_Mutation 11 114318554 G C 44 85 BRCA TCGA-E2-A15A F2 SNP Missense_Mutation 11 46741275 C G 19 49 BRCA TCGA-E2-A15A TTC9C SNP Missense_Mutation 11 62502958 G A 39 98 BRCA TCGA-E2-A15A ATL3 SNP Missense_Mutation 11 63398771 T G 60 61 BRCA TCGA-E2-A15A NPAS4 SNP Missense_Mutation 11 66192244 A G 11 70 BRCA TCGA-E2-A15A ZNF214 SNP Missense_Mutation 11 7021109 C A 32 53 BRCA TCGA-E2-A15A TUB SNP Missense_Mutation 11 8122413 C T 19 100 BRCA TCGA-E2-A15A TAOK3 SNP Splice_Site 12 118619174 A C 10 91 BRCA TCGA-E2-A15A ZNF10 DEL Frame_Shift_Del 12 133733175 T - 56 83 BRCA TCGA-E2-A15A SYT10 SNP Missense_Mutation 12 33538115 C T 21 93 BRCA TCGA-E2-A15A DPEP1 SNP Missense_Mutation 16 89702958 C T 23 59 BRCA TCGA-E2-A15A MGAT5B SNP Splice_site 17 74902269 G A 35 84 BRCA TCGA-E2-A15A WIZ SNP Missense_Mutation 19 15559079 G C 37 57 BRCA TCGA-E2-A15A CCDC155 SNP Missense_Mutation 19 49920669 C A 28 54 BRCA TCGA-E2-A15A SCN1A SNP Missense_Mutation 2 166854657 C T 20 81 BRCA TCGA-E2-A15A ZAK SNP Missense_Mutation 2 174131293 C T 18 62 BRCA TCGA-E2-A15A PRKCE SNP Silent 2 46207466 C T 19 48 BRCA TCGA-E2-A15A CEP250 SNP Missense_Mutation 20 34061226 C G 29 71 BRCA TCGA-E2-A15A ADAMTS1 SNP Silent 21 28214903 G A 33 72 BRCA TCGA-E2-A15A DOPEY2 SNP Missense_Mutation 21 37618234 G A 46 94 BRCA TCGA-E2-A15A SLC10A3 SNP Missense_Mutation 23 153715914 C T 23 60 BRCA TCGA-E2-A15A PHF16 DEL Splice_Site 23 46887292 A - 7 78 BRCA TCGA-E2-A15A WNK3 SNP Missense_Mutation 23 54224848 G A 33 61 BRCA TCGA-E2-A15A PDHB SNP Missense_Mutation 3 58413894 T G 52 81 BRCA TCGA-E2-A15A FBXL17 SNP Nonsense_Mutation 5 107216863 G A 38 78 BRCA TCGA-E2-A15A ODZ2 SNP Missense_Mutation 5 167626024 G C 47 100 BRCA TCGA-E2-A15A KIAA1191 SNP Missense_Mutation 5 175782743 G C 34 60 BRCA TCGA-E2-A15A GPR98 SNP Missense_Mutation 5 90052933 A C 3 57 BRCA TCGA-E2-A15A FAM184A SNP Missense_Mutation 6 119345581 G T 46 98 BRCA TCGA-E2-A15A EXOC2 SNP Missense_Mutation 6 564578 C A 30 97 BRCA TCGA-E2-A15A PNPLA8 SNP Missense_Mutation 7 108155517 G C 37 59 BRCA TCGA-E2-A15A KCNH2 SNP Missense_Mutation 7 150648593 C T 19 78 BRCA TCGA-E2-A15A PLEC SNP Silent 8 145004699 C T 32 57 BRCA TCGA-E2-A15A SCAI SNP Missense_Mutation 9 127781175 C T 27 94 BRCA TCGA-E2-A15A PRRC2B SNP Missense_Mutation 9 134362560 G A 38 66 BRCA TCGA-E2-A15A PTPRD SNP Nonsense_Mutation 9 8500901 C A 31 82 BRCA TCGA-E2-A15A AGTPBP1 SNP Missense_Mutation 9 88211299 C A 22 99 BRCA TCGA-E2-A15C ACTN2 SNP Missense_Mutation 1 236907962 C T 31 86 BRCA TCGA-E2-A15C PGBD2 SNP Silent 1 249210807 C G 29 47 BRCA TCGA-E2-A15C GAL3ST3 SNP Silent 11 65810935 C T 27 51 BRCA TCGA-E2-A15C RPS6KB2 SNP Splice_Site 11 67200919 G T 44 72 BRCA TCGA-E2-A15C OR5P2 SNP Missense_Mutation 11 7817592 C T 32 43 BRCA TCGA-E2-A15C DDX23 SNP Missense_Mutation 12 49228171 G A 39 82 BRCA TCGA-E2-A15C MEGF11 SNP Silent 15 66257398 G A 42 59 BRCA TCGA-E2-A15C PLIN1 SNP Missense_Mutation 15 90213364 C T 23 52 BRCA TCGA-E2-A15C SMARCA4 SNP Silent 19 11129678 C G 23 35 BRCA TCGA-E2-A15C MBD3 SNP Missense_Mutation 19 1585064 T C 60 46 BRCA TCGA-E2-A15C ZC3H4 SNP Missense_Mutation 19 47570929 G A 39 63 BRCA TCGA-E2-A15C RUVBL2 SNP Silent 19 49507653 G A 39 0 BRCA TCGA-E2-A15C TTC21B INS Frame_Shift_Ins 2 166788288 - A 57 62 BRCA TCGA-E2-A15C CREB1 SNP Missense_Mutation 2 208442363 C T 23 84 BRCA TCGA-E2-A15C GIGYF2 SNP Missense_Mutation 2 233708862 C T 19 100 BRCA TCGA-E2-A15C DYSF SNP Missense_Mutation 2 71894557 C T 28 95 BRCA TCGA-E2-A15C ZNRF3 SNP Silent 22 29445672 G A 37 11 BRCA TCGA-E2-A15C HCFC1 SNP Missense_Mutation 23 153222202 C A 22 96 BRCA TCGA-E2-A15C PHKA2 SNP Missense_Mutation 23 18944633 G A 38 80 BRCA TCGA-E2-A15C GPR174 SNP Missense_Mutation 23 78426998 G T 35 50 BRCA TCGA-E2-A15C KLF15 SNP Missense_Mutation 3 126062602 G A 38 60 BRCA TCGA-E2-A15C PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A15C LOC100287077 SNP Silent 4 8621348 C T 23 47 BRCA TCGA-E2-A15C MMRN1 SNP Missense_Mutation 4 90833166 G T 48 82 BRCA TCGA-E2-A15C PCDHB10 SNP Missense_Mutation 5 140573470 C T 22 92 BRCA TCGA-E2-A15C MAP3K1 INS Frame_Shift_Ins 5 56161239 - CT 18 72 BRCA TCGA-E2-A15C MTO1 SNP Missense_Mutation 6 74190485 G A 41 99 BRCA TCGA-E2-A15C AMPH SNP Missense_Mutation 7 38431426 G T 44 51 BRCA TCGA-E2-A15C GRB10 SNP Missense_Mutation 7 50673033 G A 39 100 BRCA TCGA-E2-A15C POM121L12 SNP Silent 7 53103484 C G 22 43 BRCA TCGA-E2-A15C PTPRD SNP Missense_Mutation 9 8341168 G A 41 88 BRCA TCGA-E2-A15D MMACHC SNP Silent 1 45974590 T A 53 49 BRCA TCGA-E2-A15D WLS SNP Missense_Mutation 1 68624888 C T 19 99 BRCA TCGA-E2-A15D GATA3 SNP Splice_Site 10 8115701 G C 33 99 BRCA TCGA-E2-A15D NCAPD3 SNP Missense_Mutation 11 134027885 C T 23 53 BRCA TCGA-E2-A15D MED13L SNP Missense_Mutation 12 116429370 C T 28 96 BRCA TCGA-E2-A15D SP7 SNP Missense_Mutation 12 53722021 G A 42 58 BRCA TCGA-E2-A15D CD69 SNP Nonsense_Mutation 12 9907274 G A 40 65 BRCA TCGA-E2-A15D GSX1 SNP Missense_Mutation 13 28367816 C T 19 64 BRCA TCGA-E2-A15D MYCBP2 SNP Missense_Mutation 13 77636761 C A 30 100 BRCA TCGA-E2-A15D UNC79 SNP Missense_Mutation 14 94088576 C A 32 80 BRCA TCGA-E2-A15D MAP1A SNP Nonsense_Mutation 15 43814971 G T 45 71 BRCA TCGA-E2-A15D FBXL19 SNP Missense_Mutation 16 30958481 G A 39 68 BRCA TCGA-E2-A15D CNOT1 SNP Silent 16 58585042 T C 59 49 BRCA TCGA-E2-A15D WWP2 SNP Missense_Mutation 16 69969793 C T 18 100 BRCA TCGA-E2-A15D QRICH2 SNP Missense_Mutation 17 74274115 C T 27 61 BRCA TCGA-E2-A15D USP34 SNP Missense_Mutation 2 61622023 G T 33 86 BRCA TCGA-E2-A15D REG1A SNP Silent 2 79350038 T C 59 37 BRCA TCGA-E2-A15D LOC100289538 DEL Frame_Shift_Del 20 3027416 C - 26 35 BRCA TCGA-E2-A15D APEX2 SNP Missense_Mutation 23 55028014 G A 43 88 BRCA TCGA-E2-A15D FHIT SNP Missense_Mutation 3 60522632 A G 10 86 BRCA TCGA-E2-A15D SH3TC1 SNP Silent 4 8217920 C T 21 66 BRCA TCGA-E2-A15D PRDM1 SNP Missense_Mutation 6 106547367 C T 31 99 BRCA TCGA-E2-A15D RMND1 SNP Missense_Mutation 6 151766672 T C 56 54 BRCA TCGA-E2-A15D MPC1 SNP Missense_Mutation 6 166779514 C T 27 65 BRCA TCGA-E2-A15D DLL1 SNP Missense_Mutation 6 170592575 G T 38 58 BRCA TCGA-E2-A15D CUL9 SNP Missense_Mutation 6 43153245 A C 7 88 BRCA TCGA-E2-A15D MUC17 SNP Missense_Mutation 7 100677246 C T 28 57 BRCA TCGA-E2-A15D EIF3B SNP Missense_Mutation 7 2418800 A G 9 93 BRCA TCGA-E2-A15D TRPS1 SNP Missense_Mutation 8 116426295 T C 53 75 BRCA TCGA-E2-A15D ZCCHC7 SNP Missense_Mutation 9 37354798 A G 3 50 BRCA TCGA-E2-A15E GPR61 SNP Silent 1 110086562 C T 30 65 BRCA TCGA-E2-A15E TSEN15 SNP Missense_Mutation 1 184023924 G T 47 64 BRCA TCGA-E2-A15E CHI3L1 SNP Missense_Mutation 1 203152855 G C 33 93 BRCA TCGA-E2-A15E PRKCZ SNP Missense_Mutation 1 2103803 G A 37 96 BRCA TCGA-E2-A15E ACTN2 SNP Silent 1 236883433 C A 22 50 BRCA TCGA-E2-A15E ETS1 SNP Missense_Mutation 11 128443000 C T 22 49 BRCA TCGA-E2-A15E EED SNP Missense_Mutation 11 85961453 A G 1 88 BRCA TCGA-E2-A15E GRIN2B SNP Missense_Mutation 12 13906449 G A 38 79 BRCA TCGA-E2-A15E TMEM117 SNP Missense_Mutation 12 44238679 C T 21 71 BRCA TCGA-E2-A15E DCLK1 SNP Silent 13 36700191 G A 40 49 BRCA TCGA-E2-A15E CEP128 SNP Missense_Mutation 14 81382827 G T 42 76 BRCA TCGA-E2-A15E MGA SNP Missense_Mutation 15 42032290 C T 19 74 BRCA TCGA-E2-A15E EFTUD2 SNP Missense_Mutation 17 42929146 G A 39 66 BRCA TCGA-E2-A15E TP53 SNP Missense_Mutation 17 7578271 T C 51 76 BRCA TCGA-E2-A15E ALOX12B SNP Silent 17 7980404 G A 40 50 BRCA TCGA-E2-A15E DHRS7C SNP Missense_Mutation 17 9680524 G A 39 93 BRCA TCGA-E2-A15E NR1H2 SNP Missense_Mutation 19 50885244 A T 2 67 BRCA TCGA-E2-A15E C21orf119 SNP Missense_Mutation 21 33765616 G C 42 37 BRCA TCGA-E2-A15E DYRK1A SNP Missense_Mutation 21 38884440 A G 14 88 BRCA TCGA-E2-A15E KCNJ6 SNP Missense_Mutation 21 39086565 T C 63 80 BRCA TCGA-E2-A15E SHROOM2 SNP Missense_Mutation 23 9905362 G A 38 74 BRCA TCGA-E2-A15E WNT7A SNP Missense_Mutation 3 13860785 C T 19 96 BRCA TCGA-E2-A15E PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A15E DGKG SNP Splice_Site 3 185960291 A G 14 87 BRCA TCGA-E2-A15E LHFPL4 SNP Missense_Mutation 3 9594129 C G 22 95 BRCA TCGA-E2-A15E PCDHA1 SNP Missense_Mutation 5 140167773 C T 19 79 BRCA TCGA-E2-A15E PCDHGB2 SNP Missense_Mutation 5 140741005 A G 7 70 BRCA TCGA-E2-A15E DSP SNP Missense_Mutation 6 7570674 G A 45 98 BRCA TCGA-E2-A15E TEX15 SNP Missense_Mutation 8 30695338 C G 32 47 BRCA TCGA-E2-A15E TEX15 SNP Missense_Mutation 8 30695447 C G 32 49 BRCA TCGA-E2-A15E TEX15 SNP Missense_Mutation 8 30695512 C A 32 57 BRCA TCGA-E2-A15F ANKRD34A SNP Silent 1 145473655 C T 19 73 BRCA TCGA-E2-A15F EFCAB2 SNP Missense_Mutation 1 245246937 C T 28 52 BRCA TCGA-E2-A15F SH3BP5L SNP Missense_Mutation 1 249107351 G A 38 90 BRCA TCGA-E2-A15F TYW3 SNP Missense_Mutation 1 75202299 A T 12 81 BRCA TCGA-E2-A15F PNLIP SNP Missense_Mutation 10 118313248 G A 39 61 BRCA TCGA-E2-A15F KIAA1279 SNP Silent 10 70748750 T C 55 11 BRCA TCGA-E2-A15F UEVLD SNP Missense_Mutation 11 18568489 G C 42 63 BRCA TCGA-E2-A15F MUC15 SNP Missense_Mutation 11 26584710 G A 40 50 BRCA TCGA-E2-A15F RAG2 SNP Missense_Mutation 11 36615502 G A 37 84 BRCA TCGA-E2-A15F STRN3 SNP Missense_Mutation 14 31388247 G C 43 71 BRCA TCGA-E2-A15F PDXDC1 DEL Frame_Shift_Del 16 15128373 G - 35 46 BRCA TCGA-E2-A15F SLC47A2 SNP Missense_Mutation 17 19607404 C T 19 27 BRCA TCGA-E2-A15F PBX4 SNP Missense_Mutation 19 19681029 A G 4 80 BRCA TCGA-E2-A15F CBR1 SNP Missense_Mutation 21 37445117 G T 46 53 BRCA TCGA-E2-A15F SLC19A1 SNP Missense_Mutation 21 46951971 G A 39 96 BRCA TCGA-E2-A15F MORC1 SNP Missense_Mutation 3 108819313 G A 40 60 BRCA TCGA-E2-A15F PARP15 SNP Missense_Mutation 3 122296675 C T 30 46 BRCA TCGA-E2-A15F AMT SNP Missense_Mutation 3 49455277 A T 12 86 BRCA TCGA-E2-A15F ANKHD1 INS Frame_Shift_Ins 5 139862242 - A 61 50 BRCA TCGA-E2-A15F HOXA1 SNP Missense_Mutation 7 27134229 G A 39 85 BRCA TCGA-E2-A15F KCNU1 SNP Missense_Mutation 8 36662741 G C 33 73 BRCA TCGA-E2-A15G YY1AP1 SNP Splice_Site 1 155649105 C G 28 48 BRCA TCGA-E2-A15G FMO1 SNP Missense_Mutation 1 171251383 C A 18 100 BRCA TCGA-E2-A15G HMCN1 DEL Frame_Shift_Del 1 185984285 TTGTAGTTCCA - 64 59 BRCA TCGA-E2-A15G SLC5A9 SNP Missense_Mutation 1 48703432 C A 20 69 BRCA TCGA-E2-A15G DNAJB4 SNP Silent 1 78481910 G A 41 61 BRCA TCGA-E2-A15G TAF3 SNP Silent 10 8006835 C G 23 36 BRCA TCGA-E2-A15G SLC16A12 SNP Silent 10 91198855 G A 37 47 BRCA TCGA-E2-A15G ZFYVE27 DEL Frame_Shift_Del 10 99502856 A - 7 81 BRCA TCGA-E2-A15G PCNXL3 SNP Missense_Mutation 11 65396838 G A 48 94 BRCA TCGA-E2-A15G FGF4 SNP Silent 11 69588113 G T 47 53 BRCA TCGA-E2-A15G CCDC67 SNP Nonsense_Mutation 11 93097377 C T 17 82 BRCA TCGA-E2-A15G SBF2 SNP Missense_Mutation 11 9989966 T A 64 80 BRCA TCGA-E2-A15G POLR3B SNP Missense_Mutation 12 106824180 G A 36 100 BRCA TCGA-E2-A15G IFT81 SNP Missense_Mutation 12 110566885 G A 44 83 BRCA TCGA-E2-A15G TAOK3 SNP Missense_Mutation 12 118590144 A G 7 91 BRCA TCGA-E2-A15G IRAK4 SNP Missense_Mutation 12 44180307 G T 48 50 BRCA TCGA-E2-A15G NALCN SNP Missense_Mutation 13 101756927 A T 8 93 BRCA TCGA-E2-A15G CARKD SNP Missense_Mutation 13 111274599 C T 31 70 BRCA TCGA-E2-A15G HNRNPA1L2 SNP Silent 13 53217035 C A 29 49 BRCA TCGA-E2-A15G PCSK6 SNP Missense_Mutation 15 101910696 G A 40 52 BRCA TCGA-E2-A15G TRPM1 SNP Silent 15 31295003 G A 40 48 BRCA TCGA-E2-A15G TLN2 SNP Silent 15 63102180 C T 31 47 BRCA TCGA-E2-A15G HERC1 SNP Silent 15 63970199 G C 39 17 BRCA TCGA-E2-A15G KIAA1199 SNP Silent 15 81176528 T C 49 49 BRCA TCGA-E2-A15G FES SNP Missense_Mutation 15 91436887 C A 18 62 BRCA TCGA-E2-A15G ZFHX3 SNP Missense_Mutation 16 72830186 T C 57 92 BRCA TCGA-E2-A15G MYH13 SNP Silent 17 10213133 G A 40 41 BRCA TCGA-E2-A15G HOXB2 SNP Missense_Mutation 17 46620904 C A 28 56 BRCA TCGA-E2-A15G USP6 SNP Missense_Mutation 17 5072218 G A 45 64 BRCA TCGA-E2-A15G GABARAP SNP Missense_Mutation 17 7145570 T C 58 85 BRCA TCGA-E2-A15G CDH20 SNP Missense_Mutation 18 59167643 C A 17 100 BRCA TCGA-E2-A15G MKNK2 SNP Silent 19 2041144 G T 43 50 BRCA TCGA-E2-A15G MYBPC2 SNP Silent 19 50939058 G A 37 48 BRCA TCGA-E2-A15G MYBPC2 SNP Splice_Site 19 50964798 G A 35 95 BRCA TCGA-E2-A15G DENND1C SNP Splice_Site 19 6480063 C T 32 79 BRCA TCGA-E2-A15G CCDC141 SNP Silent 2 179730515 G A 47 50 BRCA TCGA-E2-A15G CHPF SNP Missense_Mutation 2 220405780 C T 31 55 BRCA TCGA-E2-A15G RNF103 SNP Silent 2 86832076 C T 25 63 BRCA TCGA-E2-A15G RRP1 SNP Missense_Mutation 21 45217847 C T 23 81 BRCA TCGA-E2-A15G BRS3 SNP Silent 23 135574435 G A 45 58 BRCA TCGA-E2-A15G FAM48B1 SNP Silent 23 24383517 C T 25 52 BRCA TCGA-E2-A15G KIAA1257 SNP Missense_Mutation 3 128707653 A G 7 77 BRCA TCGA-E2-A15G TBL1XR1 SNP Nonsense_Mutation 3 176744190 T A 63 90 BRCA TCGA-E2-A15G TBL1XR1 SNP Nonsense_Mutation 3 176771659 G A 45 98 BRCA TCGA-E2-A15G PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A15G BCL6 SNP Missense_Mutation 3 187451419 G C 44 68 BRCA TCGA-E2-A15G DHX30 SNP Missense_Mutation 3 47891404 C T 27 54 BRCA TCGA-E2-A15G KBTBD8 SNP Silent 3 67054333 G A 48 53 BRCA TCGA-E2-A15G ROBO2 SNP Missense_Mutation 3 77623847 T G 49 52 BRCA TCGA-E2-A15G SRGAP3 SNP Missense_Mutation 3 9027246 T C 56 78 BRCA TCGA-E2-A15G PDHA2 SNP Missense_Mutation 4 96761984 G T 41 78 BRCA TCGA-E2-A15G EGFLAM SNP Silent 5 38407953 G A 40 53 BRCA TCGA-E2-A15G C6 SNP Nonsense_Mutation 5 41159254 G A 40 59 BRCA TCGA-E2-A15G ADAMTS16 SNP Silent 5 5318312 G A 39 37 BRCA TCGA-E2-A15G MAP3K1 SNP Missense_Mutation 5 56160565 A C 7 84 BRCA TCGA-E2-A15G MAP3K1 DEL Frame_Shift_Del 5 56177598 G - 47 94 BRCA TCGA-E2-A15G MYB SNP Nonsense_Mutation 6 135511399 G A 41 100 BRCA TCGA-E2-A15G PLEKHG1 SNP Silent 6 151055039 G A 39 44 BRCA TCGA-E2-A15G RARS2 SNP Missense_Mutation 6 88279250 G T 47 66 BRCA TCGA-E2-A15G GDF6 SNP Silent 8 97157010 G A 38 74 BRCA TCGA-E2-A15G C9orf69 SNP Missense_Mutation 9 139008534 A T 6 51 BRCA TCGA-E2-A15G C9orf142 SNP Missense_Mutation 9 139888077 G A 39 63 BRCA TCGA-E2-A15H RGS7 SNP Missense_Mutation 1 240969512 C A 21 70 BRCA TCGA-E2-A15H IFI44 SNP Missense_Mutation 1 79115985 C A 30 48 BRCA TCGA-E2-A15H GATA3 INS Frame_Shift_Ins 10 8115851 - A 17 78 BRCA TCGA-E2-A15H XRRA1 SNP Missense_Mutation 11 74651907 A C 12 62 BRCA TCGA-E2-A15H NUAK1 SNP Missense_Mutation 12 106461239 G A 43 54 BRCA TCGA-E2-A15H RFX4 SNP Silent 12 106995096 G A 41 50 BRCA TCGA-E2-A15H FGD4 SNP Nonsense_Mutation 12 32778624 C T 23 83 BRCA TCGA-E2-A15H CYP27B1 SNP Missense_Mutation 12 58159205 G A 42 62 BRCA TCGA-E2-A15H NID2 SNP Missense_Mutation 14 52485857 C T 19 84 BRCA TCGA-E2-A15H ZNF668 SNP Missense_Mutation 16 31073089 G A 37 82 BRCA TCGA-E2-A15H CA7 SNP Silent 16 66884454 G A 43 57 BRCA TCGA-E2-A15H ZNF385C SNP Missense_Mutation 17 40180151 G A 39 70 BRCA TCGA-E2-A15H CBX8 SNP Missense_Mutation 17 77768618 C T 30 83 BRCA TCGA-E2-A15H CBX8 SNP Missense_Mutation 17 77768957 C T 26 62 BRCA TCGA-E2-A15H ANO8 SNP Missense_Mutation 19 17435958 C A 24 64 BRCA TCGA-E2-A15H WDR33 SNP Missense_Mutation 2 128522166 C T 27 55 BRCA TCGA-E2-A15H POTEE SNP Missense_Mutation 2 131976471 G A 40 34 BRCA TCGA-E2-A15H XPNPEP3 SNP Missense_Mutation 22 41310322 A G 4 65 BRCA TCGA-E2-A15H PHF21B SNP Missense_Mutation 22 45309833 T C 51 59 BRCA TCGA-E2-A15H BCORL1 SNP Missense_Mutation 23 129147755 C T 23 87 BRCA TCGA-E2-A15H BCOR SNP Missense_Mutation 23 39923040 G A 37 85 BRCA TCGA-E2-A15H BRWD3 SNP Missense_Mutation 23 79990688 G C 39 94 BRCA TCGA-E2-A15H TNIK SNP Silent 3 170784081 G A 38 57 BRCA TCGA-E2-A15H DMP1 DEL Frame_Shift_Del 4 88584457 C - 26 64 BRCA TCGA-E2-A15H PHACTR2 SNP Missense_Mutation 6 144070161 A G 11 77 BRCA TCGA-E2-A15H PPIL4 SNP Missense_Mutation 6 149862525 G A 39 67 BRCA TCGA-E2-A15H SDK1 SNP Missense_Mutation 7 4153004 C A 22 96 BRCA TCGA-E2-A15H GTF2I SNP Missense_Mutation 7 74148311 C T 26 63 BRCA TCGA-E2-A15H KIAA0368 SNP Missense_Mutation 9 114170924 C A 30 95 BRCA TCGA-E2-A15H FANCC SNP Silent 9 97873829 T C 55 45 BRCA TCGA-E2-A15I ANKRD30A SNP Silent 10 37486216 C G 23 50 BRCA TCGA-E2-A15I TECTA SNP Silent 11 121000388 G A 39 51 BRCA TCGA-E2-A15I RPH3A SNP Silent 12 113307580 G A 41 51 BRCA TCGA-E2-A15I KLHL1 SNP Splice_Site 13 70281929 C T 32 87 BRCA TCGA-E2-A15I AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-E2-A15I RYR3 SNP Silent 15 33923486 G T 46 48 BRCA TCGA-E2-A15I LPO SNP Nonsense_Mutation 17 56332273 C T 29 70 BRCA TCGA-E2-A15I SHKBP1 SNP Missense_Mutation 19 41092756 G T 33 65 BRCA TCGA-E2-A15I IGFL3 SNP Silent 19 46627331 G A 34 49 BRCA TCGA-E2-A15I XIRP2 SNP Silent 2 168115717 A G 5 50 BRCA TCGA-E2-A15I DNAJB2 SNP Silent 2 220144582 C T 19 48 BRCA TCGA-E2-A15I CHRND DEL Frame_Shift_Del 2 233399890 G - 48 52 BRCA TCGA-E2-A15I SLC35A2 SNP Missense_Mutation 23 48762371 C A 21 80 BRCA TCGA-E2-A15I SYP SNP Missense_Mutation 23 49050648 C T 31 78 BRCA TCGA-E2-A15I DNAH12 SNP Missense_Mutation 3 57414077 T C 63 55 BRCA TCGA-E2-A15I NDST1 SNP Silent 5 149915315 C T 27 47 BRCA TCGA-E2-A15I GABRA6 SNP Missense_Mutation 5 161116743 A C 12 65 BRCA TCGA-E2-A15I RXFP3 SNP Silent 5 33937028 G A 38 48 BRCA TCGA-E2-A15I HDDC2 SNP Missense_Mutation 6 125598352 A T 1 74 BRCA TCGA-E2-A15I GRM3 SNP Missense_Mutation 7 86493622 C T 19 90 BRCA TCGA-E2-A15J GPATCH2 SNP Missense_Mutation 1 217783712 C A 30 77 BRCA TCGA-E2-A15J HNRNPR SNP Missense_Mutation 1 23637492 C A 21 87 BRCA TCGA-E2-A15J CHD5 SNP Missense_Mutation 1 6202309 G A 38 96 BRCA TCGA-E2-A15J GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-E2-A15J BET1L SNP Nonsense_Mutation 11 205996 G A 38 82 BRCA TCGA-E2-A15J DCHS1 SNP Missense_Mutation 11 6645350 G C 36 55 BRCA TCGA-E2-A15J LRP1 SNP Missense_Mutation 12 57548459 G A 38 93 BRCA TCGA-E2-A15J FOXJ2 SNP Missense_Mutation 12 8203193 A G 10 71 BRCA TCGA-E2-A15J FEM1B SNP Silent 15 68582869 T A 64 50 BRCA TCGA-E2-A15J PYCARD SNP Nonsense_Mutation 16 31213061 G A 46 71 BRCA TCGA-E2-A15J NCOR1 DEL Splice_Site 17 16012215 TTTTCGTGAAGTC - 60 54 BRCA TCGA-E2-A15J AKAP1 SNP Silent 17 55183677 G A 39 52 BRCA TCGA-E2-A15J USP36 SNP Missense_Mutation 17 76803588 G A 41 54 BRCA TCGA-E2-A15J GAA SNP Missense_Mutation 17 78079665 G A 40 60 BRCA TCGA-E2-A15J JAK3 SNP Silent 19 17945965 C T 24 52 BRCA TCGA-E2-A15J LTBP4 SNP Missense_Mutation 19 41113324 G A 39 76 BRCA TCGA-E2-A15J INSIG2 SNP Missense_Mutation 2 118860893 G A 36 100 BRCA TCGA-E2-A15J ADA SNP Silent 20 43255195 C T 32 68 BRCA TCGA-E2-A15J RAB9B SNP Missense_Mutation 23 103080672 C A 29 92 BRCA TCGA-E2-A15J VGLL4 SNP Nonsense_Mutation 3 11684952 A T 5 87 BRCA TCGA-E2-A15J CNTN6 SNP Missense_Mutation 3 1414040 T C 49 77 BRCA TCGA-E2-A15J COL8A1 SNP Missense_Mutation 3 99513227 G T 44 96 BRCA TCGA-E2-A15J RIMS2 SNP Missense_Mutation 8 104948831 T G 51 90 BRCA TCGA-E2-A15J VAV2 SNP Missense_Mutation 9 136634607 T C 60 57 BRCA TCGA-E2-A15K SLC16A1 SNP Missense_Mutation 1 113456766 C T 30 82 BRCA TCGA-E2-A15K LOC440563 SNP Silent 1 13183591 G A 40 31 BRCA TCGA-E2-A15K FMN2 SNP Silent 1 240370374 G A 46 42 BRCA TCGA-E2-A15K IPO13 SNP Missense_Mutation 1 44426575 G T 48 100 BRCA TCGA-E2-A15K PIK3R3 SNP Missense_Mutation 1 46512262 A C 7 91 BRCA TCGA-E2-A15K FGFR2 SNP Missense_Mutation 10 123258034 A T 12 55 BRCA TCGA-E2-A15K MLLT10 SNP Nonsense_Mutation 10 21827779 C T 29 100 BRCA TCGA-E2-A15K AMICA1 SNP Missense_Mutation 11 118081378 C T 27 58 BRCA TCGA-E2-A15K OR8D1 SNP Missense_Mutation 11 124180566 C T 22 52 BRCA TCGA-E2-A15K OR51E2 SNP Missense_Mutation 11 4703745 G C 46 83 BRCA TCGA-E2-A15K GCN1L1 SNP Silent 12 120602272 C A 25 53 BRCA TCGA-E2-A15K BCAT1 SNP Missense_Mutation 12 24982785 C T 27 76 BRCA TCGA-E2-A15K KRT82 SNP Missense_Mutation 12 52797575 C T 23 77 BRCA TCGA-E2-A15K NFATC4 DEL Frame_Shift_Del 14 24845738 C - 30 65 BRCA TCGA-E2-A15K ZSCAN2 SNP Missense_Mutation 15 85164438 G A 37 59 BRCA TCGA-E2-A15K MAZ SNP Missense_Mutation 16 29821425 C T 27 64 BRCA TCGA-E2-A15K ALOX12B SNP Missense_Mutation 17 7989371 C T 21 47 BRCA TCGA-E2-A15K MYH10 SNP Missense_Mutation 17 8415888 C G 25 77 BRCA TCGA-E2-A15K MBD1 SNP Missense_Mutation 18 47802228 G A 40 59 BRCA TCGA-E2-A15K DOT1L SNP Missense_Mutation 19 2213589 C G 21 92 BRCA TCGA-E2-A15K ZNF675 SNP Nonsense_Mutation 19 23837311 T A 63 56 BRCA TCGA-E2-A15K ZNF829 DEL In_Frame_Del 19 37382643 CTT - 28 49 BRCA TCGA-E2-A15K LGALS4 SNP Missense_Mutation 19 39292540 C T 27 69 BRCA TCGA-E2-A15K TRIP10 SNP Missense_Mutation 19 6751237 G A 39 57 BRCA TCGA-E2-A15K BCL2L11 SNP Missense_Mutation 2 111907761 C T 18 53 BRCA TCGA-E2-A15K FN1 SNP Missense_Mutation 2 216288147 C A 32 88 BRCA TCGA-E2-A15K ATAD2B SNP Missense_Mutation 2 24118722 C A 31 84 BRCA TCGA-E2-A15K DSCAM SNP Silent 21 41719610 C T 24 51 BRCA TCGA-E2-A15K TIMP3 SNP Silent 22 33245467 G A 34 74 BRCA TCGA-E2-A15K DMD SNP Missense_Mutation 23 32591673 T G 52 63 BRCA TCGA-E2-A15K SSX3 SNP Splice_site 23 48214616 C A 24 59 BRCA TCGA-E2-A15K NAALADL2 SNP Splice_site 3 175189546 G T 35 72 BRCA TCGA-E2-A15K PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A15K CRTAP SNP Missense_Mutation 3 33175699 C T 18 96 BRCA TCGA-E2-A15K TRAK1 SNP Missense_Mutation 3 42230525 C T 31 76 BRCA TCGA-E2-A15K MAGI1 SNP Missense_Mutation 3 65346921 C T 32 72 BRCA TCGA-E2-A15K DNAH5 SNP Silent 5 13759060 G A 41 56 BRCA TCGA-E2-A15K CCNB1 SNP Missense_Mutation 5 68470891 G T 44 79 BRCA TCGA-E2-A15K L3MBTL3 SNP Missense_Mutation 6 130407393 A G 1 85 BRCA TCGA-E2-A15K MLIP SNP Silent 6 53883886 G T 45 59 BRCA TCGA-E2-A15K PIWIL2 INS Frame_Shift_Ins 8 22146119 - A 17 82 BRCA TCGA-E2-A15K CTNNAL1 SNP Missense_Mutation 9 111735100 G T 38 97 BRCA TCGA-E2-A15L GPSM2 SNP Missense_Mutation 1 109466799 C A 28 75 BRCA TCGA-E2-A15L RYR2 SNP Missense_Mutation 1 237947353 G A 37 100 BRCA TCGA-E2-A15L UNC5B SNP Missense_Mutation 10 73039667 G A 38 97 BRCA TCGA-E2-A15L TMEM132B SNP Missense_Mutation 12 126137027 C T 19 100 BRCA TCGA-E2-A15L FMNL3 SNP Missense_Mutation 12 50045069 C T 31 80 BRCA TCGA-E2-A15L NIN SNP Missense_Mutation 14 51237222 C G 32 96 BRCA TCGA-E2-A15L CCNK SNP Missense_Mutation 14 99968624 A G 1 80 BRCA TCGA-E2-A15L TAOK2 SNP Missense_Mutation 16 29994166 A T 12 76 BRCA TCGA-E2-A15L RRAD SNP Missense_Mutation 16 66957813 T C 49 85 BRCA TCGA-E2-A15L MEX3C SNP Silent 18 48723154 G C 39 58 BRCA TCGA-E2-A15L PRKACA SNP Missense_Mutation 19 14213716 A G 7 89 BRCA TCGA-E2-A15L PCSK4 SNP Silent 19 1482437 C T 23 45 BRCA TCGA-E2-A15L CIB3 SNP Missense_Mutation 19 16279058 G C 33 81 BRCA TCGA-E2-A15L RPS16 SNP Missense_Mutation 19 39926258 G C 34 68 BRCA TCGA-E2-A15L CCDC8 SNP Silent 19 46915828 C T 30 59 BRCA TCGA-E2-A15L FOSL2 SNP Missense_Mutation 2 28631710 G C 41 100 BRCA TCGA-E2-A15L CCDC142 SNP Missense_Mutation 2 74709370 A C 10 54 BRCA TCGA-E2-A15L PTPRA SNP Missense_Mutation 20 3016449 G A 39 100 BRCA TCGA-E2-A15L ACE2 SNP Nonsense_Mutation 23 15610358 C A 29 92 BRCA TCGA-E2-A15L FAM47C SNP Missense_Mutation 23 37026638 C T 19 17 BRCA TCGA-E2-A15L LOC100129144 SNP Silent 23 66594453 C T 27 41 BRCA TCGA-E2-A15L PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A15L DNAH1 SNP Missense_Mutation 3 52430731 A G 16 89 BRCA TCGA-E2-A15L PRICKLE2 SNP Nonsense_Mutation 3 64133124 C A 30 86 BRCA TCGA-E2-A15L DMXL1 SNP Missense_Mutation 5 118480270 G A 33 66 BRCA TCGA-E2-A15L NLN SNP Silent 5 65088425 C T 19 49 BRCA TCGA-E2-A15L GRHL2 SNP Missense_Mutation 8 102571029 G A 38 81 BRCA TCGA-E2-A15L OXR1 SNP Missense_Mutation 8 107715146 G A 47 100 BRCA TCGA-E2-A15L MSMP SNP Missense_Mutation 9 35753714 C T 27 79 BRCA TCGA-E2-A15M TAS1R2 SNP Missense_Mutation 1 19186120 A T 9 52 BRCA TCGA-E2-A15M CRB1 SNP Missense_Mutation 1 197397057 C T 30 50 BRCA TCGA-E2-A15M CR1 SNP Missense_Mutation 1 207753648 C T 29 53 BRCA TCGA-E2-A15M OR2M5 SNP Missense_Mutation 1 248308750 A G 4 55 BRCA TCGA-E2-A15M OR2T3 SNP Missense_Mutation 1 248637013 C A 28 52 BRCA TCGA-E2-A15M SORCS1 SNP Missense_Mutation 10 108434901 C T 29 86 BRCA TCGA-E2-A15M RPP30 SNP Missense_Mutation 10 92638822 A T 11 67 BRCA TCGA-E2-A15M OR9G4 SNP Missense_Mutation 11 56510936 A G 1 72 BRCA TCGA-E2-A15M OR56A1 SNP Silent 11 6048719 G C 41 38 BRCA TCGA-E2-A15M C11orf84 SNP Silent 11 63585290 G A 33 49 BRCA TCGA-E2-A15M ACACB SNP Missense_Mutation 12 109577236 G T 48 58 BRCA TCGA-E2-A15M TBX3 SNP Missense_Mutation 12 115114129 G C 37 78 BRCA TCGA-E2-A15M KSR2 SNP Silent 12 118293372 G A 39 0 BRCA TCGA-E2-A15M IPO8 SNP Silent 12 30823923 G T 35 49 BRCA TCGA-E2-A15M WNK1 SNP Missense_Mutation 12 977510 C T 29 68 BRCA TCGA-E2-A15M DCT DEL Frame_Shift_Del 13 95114308 CTTCTGGAGAG - 20 58 BRCA TCGA-E2-A15M MIA2 SNP Missense_Mutation 14 39722059 G A 37 59 BRCA TCGA-E2-A15M KCNH5 SNP Silent 14 63174802 G A 45 58 BRCA TCGA-E2-A15M ENSG00000181984 SNP Missense_Mutation 15 20771933 C T 19 57 BRCA TCGA-E2-A15M GOLGA6L2 SNP Missense_Mutation 15 23685871 C T 31 NaN BRCA TCGA-E2-A15M ENSG00000233556 SNP Missense_Mutation 15 35385282 C T 29 52 BRCA TCGA-E2-A15M TRPM7 SNP Missense_Mutation 15 50905926 G C 48 98 BRCA TCGA-E2-A15M PLIN1 SNP Silent 15 90210242 C G 30 45 BRCA TCGA-E2-A15M BFAR SNP Missense_Mutation 16 14738316 A C 14 90 BRCA TCGA-E2-A15M CIRH1A SNP Missense_Mutation 16 69202749 A C 12 63 BRCA TCGA-E2-A15M IFI35 DEL Frame_Shift_Del 17 41158967 G - 48 60 BRCA TCGA-E2-A15M ZNF652 SNP Missense_Mutation 17 47376040 A G 6 54 BRCA TCGA-E2-A15M TP53 SNP Missense_Mutation 17 7578542 G C 35 75 BRCA TCGA-E2-A15M ACAA2 SNP Missense_Mutation 18 47329199 C A 31 100 BRCA TCGA-E2-A15M EPOR SNP Missense_Mutation 19 11493879 C T 32 53 BRCA TCGA-E2-A15M ZNF540 SNP Missense_Mutation 19 38102566 G C 45 48 BRCA TCGA-E2-A15M SIGLEC9 SNP Missense_Mutation 19 51629007 C T 18 46 BRCA TCGA-E2-A15M NLRP7 SNP Missense_Mutation 19 55450823 C T 27 50 BRCA TCGA-E2-A15M FBN3 SNP Silent 19 8191185 G A 38 48 BRCA TCGA-E2-A15M MUC16 SNP Missense_Mutation 19 9076968 A G 16 46 BRCA TCGA-E2-A15M FN1 SNP Missense_Mutation 2 216262561 C G 31 67 BRCA TCGA-E2-A15M PER2 SNP Missense_Mutation 2 239164504 G A 38 46 BRCA TCGA-E2-A15M KIF3C SNP Silent 2 26204304 C T 23 34 BRCA TCGA-E2-A15M FBXO41 SNP Missense_Mutation 2 73487592 C T 30 92 BRCA TCGA-E2-A15M LAMA5 SNP Nonsense_Mutation 20 60889977 G A 47 61 BRCA TCGA-E2-A15M ISX SNP Silent 22 35478527 G A 34 50 BRCA TCGA-E2-A15M ATG4A DEL Frame_Shift_Del 23 107396915 G - 35 59 BRCA TCGA-E2-A15M DMD DEL Frame_Shift_Del 23 31525555 T - 52 70 BRCA TCGA-E2-A15M WDR13 SNP Missense_Mutation 23 48458901 A G 6 72 BRCA TCGA-E2-A15M GPR149 SNP Silent 3 154138885 T C 60 56 BRCA TCGA-E2-A15M ENSG00000214210 SNP Nonsense_Mutation 3 163719429 G A 38 32 BRCA TCGA-E2-A15M ECT2 SNP Splice_Site 3 172520404 A G 7 88 BRCA TCGA-E2-A15M CCDC66 SNP Missense_Mutation 3 56653393 G A 33 72 BRCA TCGA-E2-A15M CRYBG3 SNP Missense_Mutation 3 97607255 G C 45 81 BRCA TCGA-E2-A15M CENPE SNP Missense_Mutation 4 104084638 C G 29 59 BRCA TCGA-E2-A15M SCLT1 SNP Silent 4 129964598 C T 20 56 BRCA TCGA-E2-A15M PALLD SNP Missense_Mutation 4 169433082 C T 27 63 BRCA TCGA-E2-A15M GPR125 SNP Silent 4 22390713 G C 35 47 BRCA TCGA-E2-A15M FAM114A1 SNP Missense_Mutation 4 38910268 C A 18 100 BRCA TCGA-E2-A15M UGT2B11 SNP Missense_Mutation 4 69870734 C T 31 85 BRCA TCGA-E2-A15M BRD8 SNP Splice_Site 5 137480865 C T 18 77 BRCA TCGA-E2-A15M LCP2 SNP Missense_Mutation 5 169697879 C T 30 77 BRCA TCGA-E2-A15M C7 SNP Splice_Site 5 40936438 A T 7 81 BRCA TCGA-E2-A15M ITGA1 SNP Silent 5 52243219 A T 8 47 BRCA TCGA-E2-A15M CMYA5 SNP Missense_Mutation 5 79032493 C A 30 53 BRCA TCGA-E2-A15M TTBK1 SNP Silent 6 43225687 G A 33 65 BRCA TCGA-E2-A15M DSP SNP Missense_Mutation 6 7583848 G C 33 69 BRCA TCGA-E2-A15M FLNC SNP Silent 7 128491585 C A 23 34 BRCA TCGA-E2-A15M AGK SNP Missense_Mutation 7 141296374 C G 29 86 BRCA TCGA-E2-A15M HOXA5 SNP Missense_Mutation 7 27182735 G T 38 66 BRCA TCGA-E2-A15M POU6F2 SNP Silent 7 39379419 C T 23 43 BRCA TCGA-E2-A15M HECW1 SNP Missense_Mutation 7 43351515 G A 40 66 BRCA TCGA-E2-A15M ASL SNP Missense_Mutation 7 65551616 C T 26 80 BRCA TCGA-E2-A15M LRP12 SNP Missense_Mutation 8 105509599 C T 19 98 BRCA TCGA-E2-A15M EIF2C2 SNP Missense_Mutation 8 141549423 T A 54 91 BRCA TCGA-E2-A15M FBXL6 DEL Splice_Site 8 145580359 GGGGCAGCAGCTGCCCTGCAGA - 43 39 BRCA TCGA-E2-A15M HEY1 SNP Silent 8 80679523 C T 29 78 BRCA TCGA-E2-A15M FBXW2 SNP Missense_Mutation 9 123550286 G C 33 82 BRCA TCGA-E2-A15M PPAPDC3 SNP Missense_Mutation 9 134165688 C T 23 59 BRCA TCGA-E2-A15M RAPGEF1 SNP Missense_Mutation 9 134514093 C T 19 80 BRCA TCGA-E2-A15M FBXO10 SNP Silent 9 37537587 G A 37 37 BRCA TCGA-E2-A15O UBE4B SNP Missense_Mutation 1 10205077 C T 27 83 BRCA TCGA-E2-A15O MTOR SNP Missense_Mutation 1 11188177 T A 51 90 BRCA TCGA-E2-A15O OR10K1 SNP Missense_Mutation 1 158435388 G A 40 49 BRCA TCGA-E2-A15O COPA SNP Missense_Mutation 1 160261650 G C 34 62 BRCA TCGA-E2-A15O SOAT1 SNP Missense_Mutation 1 179310278 C T 17 59 BRCA TCGA-E2-A15O ECE1 SNP Missense_Mutation 1 21546502 G C 41 61 BRCA TCGA-E2-A15O SLC35F3 SNP Silent 1 234367371 C T 19 50 BRCA TCGA-E2-A15O TACSTD2 SNP Missense_Mutation 1 59042071 A C 6 80 BRCA TCGA-E2-A15O PLEKHG5 DEL Frame_Shift_Del 1 6529190 CC - 30 58 BRCA TCGA-E2-A15O RBM19 SNP Missense_Mutation 12 114386694 C A 23 90 BRCA TCGA-E2-A15O NEK5 SNP Missense_Mutation 13 52684534 T C 53 74 BRCA TCGA-E2-A15O SERPINA5 SNP Missense_Mutation 14 95053768 C A 18 51 BRCA TCGA-E2-A15O MEF2A DEL Frame_Shift_Del 15 100173343 CAAAT - 17 80 BRCA TCGA-E2-A15O GOLGA6L2 SNP Silent 15 23685786 G A 40 54 BRCA TCGA-E2-A15O GPR179 SNP Missense_Mutation 17 36491508 T C 51 62 BRCA TCGA-E2-A15O GRB7 SNP Missense_Mutation 17 37899253 G A 38 76 BRCA TCGA-E2-A15O ACLY SNP Splice_Site 17 40042364 C T 18 97 BRCA TCGA-E2-A15O ENSG00000237368 INS Frame_Shift_Ins 18 14156653 - A 25 74 BRCA TCGA-E2-A15O ZNF492 SNP Silent 19 22847203 G A 33 59 BRCA TCGA-E2-A15O LRRC4B SNP Silent 19 51021653 C A 31 52 BRCA TCGA-E2-A15O LOC100288469 SNP Splice_Site 19 7570384 C A 18 51 BRCA TCGA-E2-A15O KISS1R SNP Silent 19 918593 C T 29 68 BRCA TCGA-E2-A15O SLC40A1 SNP Missense_Mutation 2 190428601 G A 37 80 BRCA TCGA-E2-A15O LOXL3 SNP Missense_Mutation 2 74762803 C A 26 95 BRCA TCGA-E2-A15O KIAA1755 SNP Missense_Mutation 20 36869418 G A 41 77 BRCA TCGA-E2-A15O CABIN1 DEL Frame_Shift_Del 22 24463095 C - 30 96 BRCA TCGA-E2-A15O MAGEB1 SNP Silent 23 30268880 T C 51 44 BRCA TCGA-E2-A15O STAG1 SNP Missense_Mutation 3 136078054 G A 37 67 BRCA TCGA-E2-A15O MCCC1 INS Splice_site 3 182817227 - T 8 60 BRCA TCGA-E2-A15O MUC4 SNP Silent 3 195509202 T G 55 45 BRCA TCGA-E2-A15O HMGB2 SNP Missense_Mutation 4 174254765 T A 64 48 BRCA TCGA-E2-A15O PCDHA3 SNP Missense_Mutation 5 140182767 C T 19 83 BRCA TCGA-E2-A15O TCOF1 SNP Missense_Mutation 5 149773041 C T 26 51 BRCA TCGA-E2-A15O HNRNPH1 SNP Missense_Mutation 5 179044055 A T 13 75 BRCA TCGA-E2-A15O BTNL8 SNP Missense_Mutation 5 180377233 G A 40 49 BRCA TCGA-E2-A15O MAP3K1 DEL Frame_Shift_Del 5 56160578 CA - 29 62 BRCA TCGA-E2-A15O CAST SNP Missense_Mutation 5 96077234 A T 10 47 BRCA TCGA-E2-A15O CHD1 SNP Silent 5 98236686 T G 56 67 BRCA TCGA-E2-A15O CUL7 DEL Frame_Shift_Del 6 43014812 G - 35 79 BRCA TCGA-E2-A15O CUL7 DEL Frame_Shift_Del 6 43014815 GGTGCAGG - 39 86 BRCA TCGA-E2-A15O C7orf23 SNP Silent 7 86825961 C T 21 78 BRCA TCGA-E2-A15O FER1L6 SNP Splice_Site 8 125047696 G T 44 93 BRCA TCGA-E2-A15P WDR47 SNP Missense_Mutation 1 109525305 C T 30 96 BRCA TCGA-E2-A15P PRDM2 DEL In_Frame_Del 1 14107659 TGT - 51 52 BRCA TCGA-E2-A15P LEPRE1 DEL Frame_Shift_Del 1 43212402 GA - 45 57 BRCA TCGA-E2-A15P DBX1 SNP Silent 11 20177994 G A 38 56 BRCA TCGA-E2-A15P ABTB2 SNP Silent 11 34194815 G A 38 32 BRCA TCGA-E2-A15P LPXN SNP Splice_site 11 58345493 G A 39 46 BRCA TCGA-E2-A15P SLC35E3 DEL In_Frame_Del 12 69140514 CTT - 24 55 BRCA TCGA-E2-A15P TTC7B SNP Missense_Mutation 14 91007788 T G 54 92 BRCA TCGA-E2-A15P TTC7B SNP Missense_Mutation 14 91007891 T G 62 93 BRCA TCGA-E2-A15P TMEM87A SNP Missense_Mutation 15 42529656 T C 55 93 BRCA TCGA-E2-A15P DNAJA4 DEL Frame_Shift_Del 15 78572663 AAGT - 1 71 BRCA TCGA-E2-A15P SUZ12 DEL Frame_Shift_Del 17 30267462 CTTA - 32 95 BRCA TCGA-E2-A15P PHLDB3 DEL In_Frame_Del 19 44008096 CTT - 20 74 BRCA TCGA-E2-A15P MYO3B SNP Silent 2 171240240 G A 43 50 BRCA TCGA-E2-A15P SP3 DEL Frame_Shift_Del 2 174819671 TGTT - 55 56 BRCA TCGA-E2-A15P RTN4 DEL Frame_Shift_Del 2 55214698 CA - 29 64 BRCA TCGA-E2-A15P TIA1 DEL Splice_site 2 70475537 AG - 7 84 BRCA TCGA-E2-A15P SEMA4F DEL In_Frame_Del 2 74900877 CTT - 20 58 BRCA TCGA-E2-A15P ZNF2 SNP Silent 2 95847302 G A 40 21 BRCA TCGA-E2-A15P CRYZL1 SNP Missense_Mutation 21 34968081 T C 50 84 BRCA TCGA-E2-A15P RIPK4 SNP Missense_Mutation 21 43187137 A T 9 80 BRCA TCGA-E2-A15P PASD1 SNP Missense_Mutation 23 150832809 G A 38 29 BRCA TCGA-E2-A15P TBL1XR1 DEL In_Frame_Del 3 176756187 TGT - 59 89 BRCA TCGA-E2-A15P PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-E2-A15P DLG1 DEL In_Frame_Del 3 196846394 AGA - 11 60 BRCA TCGA-E2-A15P EPM2AIP1 DEL In_Frame_Del 3 37033943 AGA - 7 86 BRCA TCGA-E2-A15P KBTBD8 DEL In_Frame_Del 3 67058478 ATC - 4 89 BRCA TCGA-E2-A15P C3orf38 DEL In_Frame_Del 3 88205221 AGA - 11 51 BRCA TCGA-E2-A15P ZNF518B SNP Missense_Mutation 4 10445214 A C 12 47 BRCA TCGA-E2-A15P ZNF300 SNP Missense_Mutation 5 150275009 T A 52 71 BRCA TCGA-E2-A15P BRIX1 SNP Missense_Mutation 5 34925580 G T 41 58 BRCA TCGA-E2-A15P COL4A3BP DEL In_Frame_Del 5 74706907 TTC - 60 48 BRCA TCGA-E2-A15P TAS2R3 DEL In_Frame_Del 7 141464672 CTT - 24 57 BRCA TCGA-E2-A15P ADCY1 SNP Missense_Mutation 7 45753497 C T 22 84 BRCA TCGA-E2-A15P CYP3A7 SNP Missense_Mutation 7 99306769 A G 2 63 BRCA TCGA-E2-A15P CYP3A4 DEL In_Frame_Del 7 99358590 TTC - 60 59 BRCA TCGA-E2-A15P SQLE DEL In_Frame_Del 8 126030304 TTC - 60 92 BRCA TCGA-E2-A15P NUDT18 DEL Frame_Shift_Del 8 21965179 CTGT - 20 55 BRCA TCGA-E2-A15P ENTPD2 SNP Missense_Mutation 9 139943179 G A 41 60 BRCA TCGA-E2-A15R SCNN1D SNP Splice_site 1 1222976 G A 39 52 BRCA TCGA-E2-A15R DCAF8 SNP Missense_Mutation 1 160210035 G A 39 67 BRCA TCGA-E2-A15R TEX35 SNP Missense_Mutation 1 178490396 C T 31 57 BRCA TCGA-E2-A15R ELF3 SNP Missense_Mutation 1 201980286 A G 15 69 BRCA TCGA-E2-A15R TRIM58 SNP Missense_Mutation 1 248039412 G A 43 92 BRCA TCGA-E2-A15R OPRD1 SNP Missense_Mutation 1 29189481 G A 38 77 BRCA TCGA-E2-A15R RNF207 SNP Missense_Mutation 1 6271954 G A 38 49 BRCA TCGA-E2-A15R PCGF5 SNP Missense_Mutation 10 93021117 G A 40 98 BRCA TCGA-E2-A15R ARHGEF12 SNP Missense_Mutation 11 120351050 A T 12 80 BRCA TCGA-E2-A15R CSNK1A1L SNP Missense_Mutation 13 37678978 G T 47 79 BRCA TCGA-E2-A15R FKBP3 SNP Silent 14 45590698 A G 16 58 BRCA TCGA-E2-A15R GCH1 SNP Missense_Mutation 14 55369216 C T 31 55 BRCA TCGA-E2-A15R DCI SNP Silent 16 2301520 G C 38 45 BRCA TCGA-E2-A15R SLC4A1 SNP Missense_Mutation 17 42330650 G T 42 52 BRCA TCGA-E2-A15R MTMR4 SNP Missense_Mutation 17 56569882 G A 48 95 BRCA TCGA-E2-A15R DEDD2 SNP Silent 19 42703632 C T 29 61 BRCA TCGA-E2-A15R LRRC8E SNP Silent 19 7964376 C T 19 34 BRCA TCGA-E2-A15R ZNF699 DEL Frame_Shift_Del 19 9407034 T - 59 52 BRCA TCGA-E2-A15R ARHGAP15 SNP Missense_Mutation 2 144193247 C G 29 86 BRCA TCGA-E2-A15R ADD2 SNP Missense_Mutation 2 70923448 A G 6 84 BRCA TCGA-E2-A15R BPIFB6 SNP Silent 20 31631125 G A 39 37 BRCA TCGA-E2-A15R DLGAP4 SNP Missense_Mutation 20 35064600 G A 38 78 BRCA TCGA-E2-A15R WDR4 SNP Silent 21 44279796 G A 39 26 BRCA TCGA-E2-A15R ZIC3 SNP Silent 23 136649808 C A 23 64 BRCA TCGA-E2-A15R ARSF SNP Silent 23 3030432 C T 19 43 BRCA TCGA-E2-A15R CXCR3 SNP Missense_Mutation 23 70836846 A T 11 84 BRCA TCGA-E2-A15R WNT7A SNP Missense_Mutation 3 13860569 A T 6 88 BRCA TCGA-E2-A15R CADPS SNP Missense_Mutation 3 62467428 G A 39 98 BRCA TCGA-E2-A15R OTUD4 SNP Nonsense_Mutation 4 146062555 G A 45 65 BRCA TCGA-E2-A15R RGS12 SNP Silent 4 3441258 C G 23 47 BRCA TCGA-E2-A15R PHF15 SNP Missense_Mutation 5 133902109 G A 37 100 BRCA TCGA-E2-A15R POU5F2 SNP Missense_Mutation 5 93077199 G A 39 59 BRCA TCGA-E2-A15R KIFC1 SNP Missense_Mutation 6 33374648 C T 30 76 BRCA TCGA-E2-A15R ENSG00000214666 SNP Silent 6 44240764 C T 30 52 BRCA TCGA-E2-A15R TRBC2 SNP Silent 7 142498959 G A 38 66 BRCA TCGA-E2-A15R NOM1 SNP Missense_Mutation 7 156742517 G A 43 65 BRCA TCGA-E2-A15R NFE2L3 INS Frame_Shift_Ins 7 26225181 - AA 33 52 BRCA TCGA-E2-A15R ASAH1 SNP Missense_Mutation 8 17941525 C A 27 53 BRCA TCGA-E2-A15R KCTD9 SNP Missense_Mutation 8 25292958 A G 13 90 BRCA TCGA-E2-A15R ASPH SNP Missense_Mutation 8 62555969 C T 32 59 BRCA TCGA-E2-A15R OR13D1 SNP Nonsense_Mutation 9 107457129 G T 45 86 BRCA TCGA-E2-A15R OR1N1 SNP Missense_Mutation 9 125288840 C T 19 70 BRCA TCGA-E2-A15R PRRC2B SNP Missense_Mutation 9 134354682 G A 37 94 BRCA TCGA-E2-A15R SIGMAR1 SNP Missense_Mutation 9 34635777 C T 23 81 BRCA TCGA-E2-A15S THEM5 SNP Missense_Mutation 1 151823599 A G 3 75 BRCA TCGA-E2-A15S UCK2 SNP Silent 1 165859581 G A 36 63 BRCA TCGA-E2-A15S HMCN1 SNP Splice_site 1 185984569 G C 47 80 BRCA TCGA-E2-A15S PINK1 SNP Missense_Mutation 1 20977053 T G 64 40 BRCA TCGA-E2-A15S OR2T3 SNP Silent 1 248636948 G A 40 39 BRCA TCGA-E2-A15S PTGER3 SNP Splice_site 1 71318542 C G 30 56 BRCA TCGA-E2-A15S GHITM SNP Silent 10 85901316 T G 56 45 BRCA TCGA-E2-A15S HTR3A DEL Frame_Shift_Del 11 113853915 CCCCT - 26 100 BRCA TCGA-E2-A15S BTBD10 SNP Missense_Mutation 11 13410404 G A 41 65 BRCA TCGA-E2-A15S F2 SNP Missense_Mutation 11 46744957 G T 42 63 BRCA TCGA-E2-A15S TPCN2 SNP Missense_Mutation 11 68825062 G C 47 75 BRCA TCGA-E2-A15S KRTAP5-10 SNP Missense_Mutation 11 71276905 A C 3 56 BRCA TCGA-E2-A15S NFYB SNP Nonsense_Mutation 12 104519903 G A 45 87 BRCA TCGA-E2-A15S C12orf39 SNP Missense_Mutation 12 21679844 A G 2 46 BRCA TCGA-E2-A15S LMBR1L SNP Missense_Mutation 12 49499717 T C 63 92 BRCA TCGA-E2-A15S PIP4K2C SNP Missense_Mutation 12 57987825 G T 35 64 BRCA TCGA-E2-A15S USPL1 SNP Missense_Mutation 13 31232168 A G 8 48 BRCA TCGA-E2-A15S ZWILCH SNP Missense_Mutation 15 66829513 A C 8 56 BRCA TCGA-E2-A15S CTRB2 SNP Missense_Mutation 16 75239875 G T 47 97 BRCA TCGA-E2-A15S CHAD SNP Silent 17 48545782 G A 44 76 BRCA TCGA-E2-A15S CYP2F1 SNP Missense_Mutation 19 41627952 G T 38 55 BRCA TCGA-E2-A15S TMEM91 SNP Silent 19 41889743 C T 24 64 BRCA TCGA-E2-A15S POU2F2 SNP Missense_Mutation 19 42596350 C T 22 57 BRCA TCGA-E2-A15S NLRP12 SNP Silent 19 54312951 C T 29 51 BRCA TCGA-E2-A15S SCN2A DEL Frame_Shift_Del 2 166179821 CT - 20 58 BRCA TCGA-E2-A15S ABCB11 SNP Missense_Mutation 2 169814622 A C 6 55 BRCA TCGA-E2-A15S ANGPT4 SNP Missense_Mutation 20 896760 C T 25 64 BRCA TCGA-E2-A15S BID DEL Frame_Shift_Del 22 18222887 G - 38 35 BRCA TCGA-E2-A15S SMC1B SNP Silent 22 45804622 G A 38 43 BRCA TCGA-E2-A15S IGSF1 SNP Nonsense_Mutation 23 130409100 G T 48 72 BRCA TCGA-E2-A15S BCOR SNP Missense_Mutation 23 39937122 G A 39 84 BRCA TCGA-E2-A15S SHROOM4 SNP Missense_Mutation 23 50350476 G C 36 48 BRCA TCGA-E2-A15S CCDC50 SNP Missense_Mutation 3 191093245 A T 1 56 BRCA TCGA-E2-A15S CTNNB1 SNP Silent 3 41268806 T A 55 49 BRCA TCGA-E2-A15S LTF SNP Silent 3 46501161 A G 14 43 BRCA TCGA-E2-A15S DALRD3 SNP Missense_Mutation 3 49053757 G C 34 54 BRCA TCGA-E2-A15S CD38 SNP Missense_Mutation 4 15818139 T C 57 44 BRCA TCGA-E2-A15S BMP3 SNP Missense_Mutation 4 81967479 C T 28 85 BRCA TCGA-E2-A15S FAT2 SNP Missense_Mutation 5 150905430 C A 22 82 BRCA TCGA-E2-A15S FAT2 INS In_Frame_Ins 5 150924167 - TGGGCT 35 63 BRCA TCGA-E2-A15S FAT2 SNP Silent 5 150924172 C T 32 62 BRCA TCGA-E2-A15S MBOAT1 SNP Missense_Mutation 6 20144468 G A 45 52 BRCA TCGA-E2-A15S PGK2 SNP Silent 6 49753845 G T 47 51 BRCA TCGA-E2-A15S BMP6 SNP Missense_Mutation 6 7845540 C G 29 96 BRCA TCGA-E2-A15S PKD1L1 SNP Missense_Mutation 7 47921536 C T 31 43 BRCA TCGA-E2-A15S AK8 SNP Missense_Mutation 9 135702351 G T 34 63 BRCA TCGA-E2-A15T PALMD SNP Silent 1 100154698 G A 47 45 BRCA TCGA-E2-A15T UBR4 SNP Silent 1 19491831 T C 57 56 BRCA TCGA-E2-A15T OBSCN SNP Silent 1 228444554 G A 39 53 BRCA TCGA-E2-A15T FMN2 SNP Missense_Mutation 1 240374531 A G 1 87 BRCA TCGA-E2-A15T EIF2C1 SNP Missense_Mutation 1 36359982 G A 40 100 BRCA TCGA-E2-A15T PARD3 SNP Missense_Mutation 10 34620061 A T 8 43 BRCA TCGA-E2-A15T BCL9L DEL Frame_Shift_Del 11 118769652 G - 37 50 BRCA TCGA-E2-A15T HYOU1 SNP Missense_Mutation 11 118925916 C A 17 97 BRCA TCGA-E2-A15T NTM DEL Frame_Shift_Del 11 132180029 A - 5 68 BRCA TCGA-E2-A15T PTPN5 DEL Frame_Shift_Del 11 18765723 C - 30 59 BRCA TCGA-E2-A15T MADD DEL Frame_Shift_Del 11 47303974 G - 35 58 BRCA TCGA-E2-A15T TBC1D10C SNP Missense_Mutation 11 67173127 G A 40 81 BRCA TCGA-E2-A15T HECTD4 DEL Frame_Shift_Del 12 112657218 G - 47 99 BRCA TCGA-E2-A15T ANKRD52 DEL Splice_Site 12 56651611 C - 18 91 BRCA TCGA-E2-A15T FRY SNP Missense_Mutation 13 32869412 C T 23 100 BRCA TCGA-E2-A15T PRPF39 SNP Missense_Mutation 14 45566145 A G 16 90 BRCA TCGA-E2-A15T SYNDIG1L DEL Frame_Shift_Del 14 74876345 G - 47 90 BRCA TCGA-E2-A15T ANKRD34C DEL Frame_Shift_Del 15 79586581 A - 9 65 BRCA TCGA-E2-A15T SYNM SNP Missense_Mutation 15 99672941 C T 31 62 BRCA TCGA-E2-A15T CTCF SNP Nonsense_Mutation 16 67670628 G T 45 87 BRCA TCGA-E2-A15T HAS3 DEL Frame_Shift_Del 16 69148464 C - 18 67 BRCA TCGA-E2-A15T FAM83G DEL Frame_Shift_Del 17 18891586 C - 26 78 BRCA TCGA-E2-A15T CTC1 DEL Frame_Shift_Del 17 8138378 C - 26 51 BRCA TCGA-E2-A15T TRIP10 DEL Frame_Shift_Del 19 6751229 C - 26 66 BRCA TCGA-E2-A15T RGPD8 SNP Missense_Mutation 2 113161599 A T 4 65 BRCA TCGA-E2-A15T UGT1A6 SNP Missense_Mutation 2 234601744 G T 44 32 BRCA TCGA-E2-A15T PDCD1 SNP Silent 2 242793270 G A 40 42 BRCA TCGA-E2-A15T NFATC2 SNP Silent 20 50048860 G A 38 50 BRCA TCGA-E2-A15T LIF SNP Nonsense_Mutation 22 30639826 G A 39 7 BRCA TCGA-E2-A15T GUCY2F SNP Missense_Mutation 23 108718516 C A 22 89 BRCA TCGA-E2-A15T SHROOM4 SNP Silent 23 50377366 C T 26 46 BRCA TCGA-E2-A15T FANCD2 SNP Missense_Mutation 3 10106486 C T 24 65 BRCA TCGA-E2-A15T RETNLB SNP Missense_Mutation 3 108474726 C T 21 75 BRCA TCGA-E2-A15T DRD3 SNP Missense_Mutation 3 113890710 C T 19 48 BRCA TCGA-E2-A15T SCN11A SNP Silent 3 38938447 G A 41 53 BRCA TCGA-E2-A15T INPP4B SNP Silent 4 143226676 G A 34 51 BRCA TCGA-E2-A15T KIAA0922 SNP Silent 4 154471282 T C 52 63 BRCA TCGA-E2-A15T PSD2 DEL Frame_Shift_Del 5 139202313 G - 47 92 BRCA TCGA-E2-A15T TNFAIP3 SNP Silent 6 138197170 C T 31 46 BRCA TCGA-E2-A15T SYNE1 DEL Frame_Shift_Del 6 152652696 G - 35 100 BRCA TCGA-E2-A15T THBS2 SNP Silent 6 169626380 T C 60 54 BRCA TCGA-E2-A15T MUC17 SNP Silent 7 100696339 C T 19 39 BRCA TCGA-E2-A15T GALNT11 SNP Splice_Site 7 151807732 T A 57 78 BRCA TCGA-E2-A15T ENSG00000186921 SNP Missense_Mutation 7 158415438 A C 4 53 BRCA TCGA-E2-A15T EFHA2 SNP Missense_Mutation 8 16944521 G C 33 87 BRCA TCGA-E2-A15T EXTL3 SNP Missense_Mutation 8 28595139 G C 45 85 BRCA TCGA-E2-A15T DAB2IP SNP Missense_Mutation 9 124522318 G A 42 97 BRCA TCGA-E2-A15T COL5A1 SNP Missense_Mutation 9 137687132 C T 23 62 BRCA TCGA-E2-A1AZ KIF1B SNP Missense_Mutation 1 10364067 C T 31 82 BRCA TCGA-E2-A1AZ VPS45 SNP Silent 1 150054883 A C 12 52 BRCA TCGA-E2-A1AZ HCN3 SNP Missense_Mutation 1 155255046 G T 43 96 BRCA TCGA-E2-A1AZ TNN SNP Missense_Mutation 1 175046741 C G 29 55 BRCA TCGA-E2-A1AZ KIAA1804 SNP Silent 1 233482294 A G 7 39 BRCA TCGA-E2-A1AZ TYW3 SNP Missense_Mutation 1 75229641 C G 29 54 BRCA TCGA-E2-A1AZ NKX6-2 SNP Nonstop_Mutation 10 134598422 A G 6 71 BRCA TCGA-E2-A1AZ FAM208B SNP Missense_Mutation 10 5789754 G T 44 59 BRCA TCGA-E2-A1AZ CHST3 SNP Silent 10 73767170 C A 23 51 BRCA TCGA-E2-A1AZ MARCH5 SNP Missense_Mutation 10 94110927 G A 38 98 BRCA TCGA-E2-A1AZ MPPED2 SNP Missense_Mutation 11 30433116 C T 31 100 BRCA TCGA-E2-A1AZ OR5AS1 SNP Missense_Mutation 11 55798847 G A 40 45 BRCA TCGA-E2-A1AZ CDC42BPG SNP Silent 11 64597091 G A 38 43 BRCA TCGA-E2-A1AZ CDC42BPG SNP Nonsense_Mutation 11 64597720 G A 37 60 BRCA TCGA-E2-A1AZ C2CD3 SNP Missense_Mutation 11 73809103 G C 35 50 BRCA TCGA-E2-A1AZ UNC119B SNP Silent 12 121148295 G A 37 47 BRCA TCGA-E2-A1AZ CNTN1 SNP Silent 12 41337930 C A 31 40 BRCA TCGA-E2-A1AZ DCLK1 SNP Missense_Mutation 13 36348770 A T 14 65 BRCA TCGA-E2-A1AZ SEPT1 SNP Missense_Mutation 16 30392785 C A 23 10 BRCA TCGA-E2-A1AZ COIL DEL Frame_Shift_Del 17 55028115 TT - 56 60 BRCA TCGA-E2-A1AZ ITGB4 SNP Missense_Mutation 17 73748569 G A 43 81 BRCA TCGA-E2-A1AZ SIGLEC8 SNP Missense_Mutation 19 51961309 G C 45 55 BRCA TCGA-E2-A1AZ ZNF611 SNP Missense_Mutation 19 53208630 G C 45 82 BRCA TCGA-E2-A1AZ ZNF665 SNP Missense_Mutation 19 53668314 G A 37 46 BRCA TCGA-E2-A1AZ IWS1 SNP Silent 2 128250923 T G 59 46 BRCA TCGA-E2-A1AZ ARL6IP6 SNP Missense_Mutation 2 153575347 G T 38 52 BRCA TCGA-E2-A1AZ TANC1 SNP Missense_Mutation 2 160006902 A C 8 60 BRCA TCGA-E2-A1AZ EPAS1 SNP Missense_Mutation 2 46587815 G C 33 84 BRCA TCGA-E2-A1AZ SLC1A4 SNP Silent 2 65217239 G T 42 46 BRCA TCGA-E2-A1AZ LYG1 SNP Missense_Mutation 2 99907849 T C 51 51 BRCA TCGA-E2-A1AZ NRK SNP Missense_Mutation 23 105152799 C A 22 52 BRCA TCGA-E2-A1AZ TRPC5 SNP Silent 23 111097215 C A 17 58 BRCA TCGA-E2-A1AZ ODZ1 SNP Missense_Mutation 23 123556236 C T 31 86 BRCA TCGA-E2-A1AZ C3orf27 SNP Silent 3 128292138 G A 45 49 BRCA TCGA-E2-A1AZ COL6A5 SNP Missense_Mutation 3 130116760 G T 39 51 BRCA TCGA-E2-A1AZ TOPBP1 SNP Missense_Mutation 3 133347430 G C 45 66 BRCA TCGA-E2-A1AZ COL7A1 SNP Missense_Mutation 3 48627949 C A 26 53 BRCA TCGA-E2-A1AZ CASP6 SNP Missense_Mutation 4 110610542 G A 41 100 BRCA TCGA-E2-A1AZ HIST1H1B SNP Missense_Mutation 6 27834744 C G 32 64 BRCA TCGA-E2-A1AZ CUL9 SNP Missense_Mutation 6 43188323 G C 33 100 BRCA TCGA-E2-A1AZ CENPQ SNP Silent 6 49438722 G C 45 52 BRCA TCGA-E2-A1AZ CUL1 SNP Missense_Mutation 7 148454195 C T 31 76 BRCA TCGA-E2-A1AZ KCNH2 SNP Missense_Mutation 7 150645546 C T 24 74 BRCA TCGA-E2-A1AZ CCDC129 SNP Missense_Mutation 7 31690768 G C 45 74 BRCA TCGA-E2-A1AZ WBSCR22 SNP Silent 7 73100970 C A 19 77 BRCA TCGA-E2-A1AZ PKHD1L1 SNP Missense_Mutation 8 110461681 A C 14 48 BRCA TCGA-E2-A1AZ KCNQ3 SNP Silent 8 133182583 G A 45 83 BRCA TCGA-E2-A1AZ BAI1 SNP Missense_Mutation 8 143546131 G A 38 66 BRCA TCGA-E2-A1AZ ADAM7 SNP Silent 8 24300020 G C 47 56 BRCA TCGA-E2-A1AZ CA2 SNP Missense_Mutation 8 86389385 G C 47 52 BRCA TCGA-E2-A1AZ TRIM14 SNP Missense_Mutation 9 100862335 G A 34 61 BRCA TCGA-E2-A1AZ PNPLA7 SNP Missense_Mutation 9 140400143 C T 29 63 BRCA TCGA-E2-A1B0 PRAMEF11 SNP Missense_Mutation 1 12887489 T C 57 47 BRCA TCGA-E2-A1B0 IGSF8 SNP Silent 1 160063723 G C 39 18 BRCA TCGA-E2-A1B0 RAP1GAP SNP Silent 1 21924472 C T 28 55 BRCA TCGA-E2-A1B0 OR2G3 SNP Missense_Mutation 1 247769043 T G 50 27 BRCA TCGA-E2-A1B0 MYO3A SNP Silent 10 26463156 A G 3 49 BRCA TCGA-E2-A1B0 TUBAL3 SNP Silent 10 5435789 C T 31 45 BRCA TCGA-E2-A1B0 KAT6B SNP Silent 10 76788710 A G 9 52 BRCA TCGA-E2-A1B0 KDM2A SNP Missense_Mutation 11 67020978 G A 34 99 BRCA TCGA-E2-A1B0 PANX1 SNP Missense_Mutation 11 93913090 G T 40 49 BRCA TCGA-E2-A1B0 LRP1 SNP Missense_Mutation 12 57602874 G A 40 97 BRCA TCGA-E2-A1B0 DCLK1 SNP Missense_Mutation 13 36700097 G A 37 100 BRCA TCGA-E2-A1B0 SLC7A7 SNP Silent 14 23245482 G A 45 54 BRCA TCGA-E2-A1B0 AK7 SNP Missense_Mutation 14 96871122 G A 38 48 BRCA TCGA-E2-A1B0 MAP1A SNP Missense_Mutation 15 43817021 C T 26 55 BRCA TCGA-E2-A1B0 IDH3A SNP Missense_Mutation 15 78453949 G A 39 100 BRCA TCGA-E2-A1B0 KIAA1199 SNP Missense_Mutation 15 81221455 A G 10 76 BRCA TCGA-E2-A1B0 MMP15 SNP Missense_Mutation 16 58073925 A T 10 88 BRCA TCGA-E2-A1B0 C16orf47 SNP Missense_Mutation 16 73164976 G T 48 47 BRCA TCGA-E2-A1B0 TRPV2 SNP Missense_Mutation 17 16330833 T G 53 73 BRCA TCGA-E2-A1B0 MYO15A SNP Silent 17 18022852 C T 19 49 BRCA TCGA-E2-A1B0 ACLY SNP Missense_Mutation 17 40065254 T A 50 93 BRCA TCGA-E2-A1B0 TP53 SNP Missense_Mutation 17 7578534 C G 32 75 BRCA TCGA-E2-A1B0 TLE6 SNP Nonsense_Mutation 19 2987728 G T 41 56 BRCA TCGA-E2-A1B0 ZNF577 SNP Silent 19 52376691 T C 60 48 BRCA TCGA-E2-A1B0 EMR1 SNP Silent 19 6919734 C T 29 49 BRCA TCGA-E2-A1B0 CBS SNP Missense_Mutation 21 44483098 C T 23 90 BRCA TCGA-E2-A1B0 PFKL SNP Silent 21 45742920 C T 31 49 BRCA TCGA-E2-A1B0 PIWIL3 SNP Silent 22 25115535 C T 27 48 BRCA TCGA-E2-A1B0 PITPNB SNP Splice_site 22 28293118 C T 23 82 BRCA TCGA-E2-A1B0 PAK3 SNP Missense_Mutation 23 110366476 C T 31 92 BRCA TCGA-E2-A1B0 TRAPPC2 SNP Missense_Mutation 23 13734634 A G 14 55 BRCA TCGA-E2-A1B0 CCDC37 SNP Silent 3 126153123 C T 29 52 BRCA TCGA-E2-A1B0 RAB43 SNP Missense_Mutation 3 128810076 T C 63 87 BRCA TCGA-E2-A1B0 CDH6 SNP Nonsense_Mutation 5 31294332 C A 17 71 BRCA TCGA-E2-A1B0 REV3L SNP Missense_Mutation 6 111688818 C A 17 56 BRCA TCGA-E2-A1B0 SASH1 SNP Missense_Mutation 6 148852768 G A 38 97 BRCA TCGA-E2-A1B0 ITPR3 SNP Missense_Mutation 6 33653896 G A 41 97 BRCA TCGA-E2-A1B0 DAAM2 SNP Silent 6 39847226 G A 36 57 BRCA TCGA-E2-A1B0 SMARCD3 SNP Missense_Mutation 7 150937202 C T 20 76 BRCA TCGA-E2-A1B0 ANXA13 SNP Missense_Mutation 8 124710745 A C 2 48 BRCA TCGA-E2-A1B0 DLC1 SNP Missense_Mutation 8 13357027 T C 58 54 BRCA TCGA-E2-A1B0 LOC100288765 SNP Missense_Mutation 9 69845843 A C 9 48 BRCA TCGA-E2-A1B1 SLAMF9 SNP Silent 1 159923409 G A 39 56 BRCA TCGA-E2-A1B1 CHI3L1 SNP Silent 1 203154335 G C 46 57 BRCA TCGA-E2-A1B1 SRRM1 SNP Missense_Mutation 1 24996733 C T 23 69 BRCA TCGA-E2-A1B1 PNLIP SNP Silent 10 118318677 C T 30 59 BRCA TCGA-E2-A1B1 FAT3 SNP Missense_Mutation 11 92533820 C G 17 55 BRCA TCGA-E2-A1B1 ATP2B1 SNP Missense_Mutation 12 90018057 A C 1 92 BRCA TCGA-E2-A1B1 NEDD4 SNP Missense_Mutation 15 56141078 G A 41 80 BRCA TCGA-E2-A1B1 NTRK3 SNP Missense_Mutation 15 88476388 G A 39 53 BRCA TCGA-E2-A1B1 CDH11 SNP Silent 16 65016151 G A 40 49 BRCA TCGA-E2-A1B1 HLF SNP Missense_Mutation 17 53345424 G A 48 97 BRCA TCGA-E2-A1B1 TRIP12 SNP Silent 2 230643194 G A 34 52 BRCA TCGA-E2-A1B1 ZCCHC12 SNP Missense_Mutation 23 117959237 C G 17 48 BRCA TCGA-E2-A1B1 GRK4 SNP Missense_Mutation 4 2986263 C T 31 85 BRCA TCGA-E2-A1B1 PTPN13 SNP Missense_Mutation 4 87728895 C G 29 100 BRCA TCGA-E2-A1B1 PHIP DEL In_Frame_Del 6 79665349 TTC - 64 75 BRCA TCGA-E2-A1B4 SDHB SNP Missense_Mutation 1 17355201 T C 52 76 BRCA TCGA-E2-A1B4 PCNXL2 SNP Nonsense_Mutation 1 233136233 C A 31 100 BRCA TCGA-E2-A1B4 NPHP4 SNP Missense_Mutation 1 5964847 C T 31 46 BRCA TCGA-E2-A1B4 HIP1R SNP Missense_Mutation 12 123345688 T G 52 56 BRCA TCGA-E2-A1B4 LOC100288809 SNP Missense_Mutation 12 53201674 G T 47 35 BRCA TCGA-E2-A1B4 ENOX1 SNP Splice_site 13 43810874 C A 30 83 BRCA TCGA-E2-A1B4 KATNB1 SNP Missense_Mutation 16 57786814 G A 37 99 BRCA TCGA-E2-A1B4 ELAC2 SNP Silent 17 12897055 G A 33 51 BRCA TCGA-E2-A1B4 MYBBP1A SNP Splice_Site 17 4448552 A C 6 57 BRCA TCGA-E2-A1B4 GP1BA SNP Missense_Mutation 17 4837651 G C 43 50 BRCA TCGA-E2-A1B4 XYLT2 SNP Missense_Mutation 17 48433561 T C 52 90 BRCA TCGA-E2-A1B4 DSG1 SNP Missense_Mutation 18 28934692 G C 45 74 BRCA TCGA-E2-A1B4 FCHO1 SNP Nonsense_Mutation 19 17883272 C T 21 85 BRCA TCGA-E2-A1B4 ATP8B3 SNP Missense_Mutation 19 1802548 A C 11 72 BRCA TCGA-E2-A1B4 PNMAL2 SNP Silent 19 46998318 C T 27 45 BRCA TCGA-E2-A1B4 THSD7B SNP Missense_Mutation 2 138000059 G A 38 85 BRCA TCGA-E2-A1B4 ZSWIM2 SNP Missense_Mutation 2 187697884 T C 50 51 BRCA TCGA-E2-A1B4 KLHL30 SNP Silent 2 239049614 C T 27 44 BRCA TCGA-E2-A1B4 USP34 SNP Missense_Mutation 2 61492669 A G 13 91 BRCA TCGA-E2-A1B4 RRBP1 SNP Missense_Mutation 20 17640582 T G 59 44 BRCA TCGA-E2-A1B4 TPTE SNP Missense_Mutation 21 10921971 G A 42 48 BRCA TCGA-E2-A1B4 ADAMTS5 SNP Missense_Mutation 21 28305265 G T 44 55 BRCA TCGA-E2-A1B4 MTMR3 SNP Missense_Mutation 22 30414019 A C 14 89 BRCA TCGA-E2-A1B4 TMSB15A SNP Missense_Mutation 23 101769050 T G 49 52 BRCA TCGA-E2-A1B4 STAG2 SNP Missense_Mutation 23 123211834 A G 5 90 BRCA TCGA-E2-A1B4 CD96 SNP Missense_Mutation 3 111304209 C A 19 43 BRCA TCGA-E2-A1B4 PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-E2-A1B4 DOCK3 SNP Missense_Mutation 3 51393602 C A 28 59 BRCA TCGA-E2-A1B4 DNAH5 SNP Missense_Mutation 5 13902213 G A 46 74 BRCA TCGA-E2-A1B4 CDHR2 SNP Missense_Mutation 5 176004515 C T 27 43 BRCA TCGA-E2-A1B4 MAP3K1 SNP Nonsense_Mutation 5 56178085 C T 29 76 BRCA TCGA-E2-A1B4 MAP3K1 INS Frame_Shift_Ins 5 56178466 - T 36 92 BRCA TCGA-E2-A1B4 PTCD2 SNP Missense_Mutation 5 71654216 A C 6 62 BRCA TCGA-E2-A1B4 FOXK1 SNP Silent 7 4796777 T G 59 35 BRCA TCGA-E2-A1B4 SLC52A2 SNP Missense_Mutation 8 145584626 A G 16 75 BRCA TCGA-E2-A1B4 RGS3 SNP Missense_Mutation 9 116346360 G A 41 74 BRCA TCGA-E2-A1B4 OLFML2A SNP Missense_Mutation 9 127563854 G T 34 67 BRCA TCGA-E2-A1B4 SMARCA2 SNP Missense_Mutation 9 2088587 G A 33 100 BRCA TCGA-E2-A1B5 GATA3 INS Frame_Shift_Ins 10 8115965 - A 25 44 BRCA TCGA-E2-A1B5 TRIM34 DEL Frame_Shift_Del 11 5624628 AC - 10 70 BRCA TCGA-E2-A1B5 RAB6A INS Frame_Shift_Ins 11 73429669 - A 49 76 BRCA TCGA-E2-A1B5 PANX1 DEL In_Frame_Del 11 93886744 AGA - 7 68 BRCA TCGA-E2-A1B5 BRIP1 SNP Silent 17 59821812 G A 45 66 BRCA TCGA-E2-A1B5 BRIP1 SNP Missense_Mutation 17 59821901 G C 33 70 BRCA TCGA-E2-A1B5 ADNP2 SNP Silent 18 77895774 C T 29 43 BRCA TCGA-E2-A1B5 PCSK4 SNP Silent 19 1482992 G A 48 58 BRCA TCGA-E2-A1B5 GRIN2D SNP Missense_Mutation 19 48945466 G A 37 95 BRCA TCGA-E2-A1B5 FTL SNP Missense_Mutation 19 49469846 G A 45 93 BRCA TCGA-E2-A1B5 PRR12 SNP Missense_Mutation 19 50128449 C T 23 61 BRCA TCGA-E2-A1B5 PCDHA3 SNP Missense_Mutation 5 140181539 G A 37 99 BRCA TCGA-E2-A1B5 PDGFRB SNP Missense_Mutation 5 149510110 G T 44 51 BRCA TCGA-E2-A1B5 LPA SNP Missense_Mutation 6 161071469 C T 31 55 BRCA TCGA-E2-A1B5 ZBTB6 SNP Silent 9 125674142 G C 45 57 BRCA TCGA-E2-A1B6 RYR2 SNP Missense_Mutation 1 237796915 G A 40 99 BRCA TCGA-E2-A1B6 DHCR24 SNP Missense_Mutation 1 55331007 C T 27 100 BRCA TCGA-E2-A1B6 CHD4 SNP Silent 12 6690307 A G 8 43 BRCA TCGA-E2-A1B6 LINGO1 SNP Missense_Mutation 15 77907402 C T 19 62 BRCA TCGA-E2-A1B6 TP53 SNP Nonsense_Mutation 17 7574003 G A 39 57 BRCA TCGA-E2-A1B6 PDE4A SNP Missense_Mutation 19 10570300 C G 30 65 BRCA TCGA-E2-A1B6 CASP8 SNP Missense_Mutation 2 202149683 C T 30 71 BRCA TCGA-E2-A1B6 PHF21B SNP Missense_Mutation 22 45279150 C T 27 56 BRCA TCGA-E2-A1B6 C6orf118 SNP Missense_Mutation 6 165715615 G T 43 79 BRCA TCGA-E2-A1B6 ZNF618 SNP Missense_Mutation 9 116811102 G T 43 94 BRCA TCGA-E2-A1BC C1orf129 SNP Silent 1 170952657 C T 19 33 BRCA TCGA-E2-A1BC CCSAP SNP Missense_Mutation 1 229461134 T G 63 68 BRCA TCGA-E2-A1BC DDAH1 SNP Missense_Mutation 1 85790543 G T 44 53 BRCA TCGA-E2-A1BC MUS81 SNP Missense_Mutation 11 65632201 G T 42 75 BRCA TCGA-E2-A1BC SPTBN2 SNP Silent 11 66475053 G C 45 52 BRCA TCGA-E2-A1BC PRB1 SNP Missense_Mutation 12 11506225 G A 41 67 BRCA TCGA-E2-A1BC GPR133 SNP Missense_Mutation 12 131616342 G A 47 70 BRCA TCGA-E2-A1BC TM7SF3 SNP Silent 12 27133509 G C 45 45 BRCA TCGA-E2-A1BC SMAD9 SNP Missense_Mutation 13 37446983 C T 27 99 BRCA TCGA-E2-A1BC ALDH1A3 SNP Missense_Mutation 15 101447414 C T 25 81 BRCA TCGA-E2-A1BC ARHGAP11A SNP Nonsense_Mutation 15 32929655 C A 29 57 BRCA TCGA-E2-A1BC RBFOX1 SNP Splice_site 16 7102099 G T 43 77 BRCA TCGA-E2-A1BC MAP2K4 DEL Splice_Site 17 11984671 AG - 7 89 BRCA TCGA-E2-A1BC NF1 DEL Splice_Site 17 29588873 TAGG - 53 45 BRCA TCGA-E2-A1BC KIF18B SNP Silent 17 43009058 G A 36 49 BRCA TCGA-E2-A1BC USH1G SNP Missense_Mutation 17 72916760 G C 44 59 BRCA TCGA-E2-A1BC KCNJ6 SNP Silent 21 39087022 T C 63 41 BRCA TCGA-E2-A1BC FAM48B2 SNP Missense_Mutation 23 24329460 G T 38 43 BRCA TCGA-E2-A1BC BCOR SNP Missense_Mutation 23 39922954 T C 51 48 BRCA TCGA-E2-A1BC RLIM SNP Missense_Mutation 23 73812045 G A 40 83 BRCA TCGA-E2-A1BC PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A1BC BSN SNP Nonsense_Mutation 3 49698237 A T 5 89 BRCA TCGA-E2-A1BC RNF123 SNP Missense_Mutation 3 49742580 G C 38 76 BRCA TCGA-E2-A1BC PCDH10 SNP Nonsense_Mutation 4 134084410 C T 27 69 BRCA TCGA-E2-A1BC GABRG1 SNP Missense_Mutation 4 46053637 G C 36 99 BRCA TCGA-E2-A1BC SH3TC1 SNP Silent 4 8228801 C G 22 28 BRCA TCGA-E2-A1BC FAM13A SNP Silent 4 89744132 C A 25 57 BRCA TCGA-E2-A1BC EXOC3 SNP Silent 5 447698 C T 30 42 BRCA TCGA-E2-A1BC MED23 DEL Frame_Shift_Del 6 131937129 G - 47 87 BRCA TCGA-E2-A1BC SCARA5 SNP Silent 8 27845103 G A 39 51 BRCA TCGA-E2-A1BC OR1N1 SNP Silent 9 125288841 G A 38 48 BRCA TCGA-E2-A1BD RNASEL SNP Missense_Mutation 1 182554944 G T 34 53 BRCA TCGA-E2-A1BD ACTN2 SNP Missense_Mutation 1 236918328 C T 23 97 BRCA TCGA-E2-A1BD SLC45A1 SNP Splice_site 1 8385359 A G 12 50 BRCA TCGA-E2-A1BD UBE3B SNP Missense_Mutation 12 109948241 C G 22 97 BRCA TCGA-E2-A1BD RIMBP2 SNP Silent 12 130935809 C T 23 35 BRCA TCGA-E2-A1BD RERGL SNP Missense_Mutation 12 18234200 C G 32 61 BRCA TCGA-E2-A1BD KCNA1 SNP Silent 12 5021915 C T 31 50 BRCA TCGA-E2-A1BD RNF41 SNP Missense_Mutation 12 56601499 C T 19 100 BRCA TCGA-E2-A1BD ITGA11 SNP Missense_Mutation 15 68613777 C T 23 50 BRCA TCGA-E2-A1BD GP2 SNP Splice_site 16 20327362 A T 10 52 BRCA TCGA-E2-A1BD CACNA1A SNP Missense_Mutation 19 13414649 G T 33 95 BRCA TCGA-E2-A1BD ALK SNP Missense_Mutation 2 29455275 C T 23 96 BRCA TCGA-E2-A1BD DNAH6 SNP Silent 2 84846872 C T 23 46 BRCA TCGA-E2-A1BD MATN4 SNP Missense_Mutation 20 43927055 C T 27 85 BRCA TCGA-E2-A1BD ELMO2 DEL Frame_Shift_Del 20 45021747 T - 60 53 BRCA TCGA-E2-A1BD PLCB1 SNP Silent 20 8721040 G T 46 40 BRCA TCGA-E2-A1BD RRP1 SNP Missense_Mutation 21 45220491 C T 23 61 BRCA TCGA-E2-A1BD CCT8L2 SNP Missense_Mutation 22 17071880 C T 19 48 BRCA TCGA-E2-A1BD GRIA3 SNP Missense_Mutation 23 122599568 C T 24 98 BRCA TCGA-E2-A1BD SYTL5 SNP Silent 23 37893157 A T 7 29 BRCA TCGA-E2-A1BD PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A1BD GAK SNP Missense_Mutation 4 906526 G T 45 59 BRCA TCGA-E2-A1BD MAP3K1 DEL Frame_Shift_Del 5 56177011 ATAG - 16 62 BRCA TCGA-E2-A1BD MAP3K1 INS Frame_Shift_Ins 5 56179424 - T 44 95 BRCA TCGA-E2-A1BD MAP1B SNP Nonsense_Mutation 5 71479590 C T 23 70 BRCA TCGA-E2-A1BD NEUROD6 SNP Missense_Mutation 7 31377921 C T 27 96 BRCA TCGA-E2-A1BD GNAI1 SNP Missense_Mutation 7 79818279 C T 32 100 BRCA TCGA-E2-A1BD COMMD5 SNP Nonsense_Mutation 8 146076483 G A 46 71 BRCA TCGA-E2-A1BD PCM1 SNP Missense_Mutation 8 17838141 A C 5 67 BRCA TCGA-E2-A1IE CTTNBP2NL SNP Missense_Mutation 1 112998889 C T 23 99 BRCA TCGA-E2-A1IE EIF3I SNP Missense_Mutation 1 32694376 C T 19 75 BRCA TCGA-E2-A1IE ATM SNP Missense_Mutation 11 108214019 T G 56 93 BRCA TCGA-E2-A1IE CD59 SNP Missense_Mutation 11 33731840 G A 40 5 BRCA TCGA-E2-A1IE OR10P1 SNP Missense_Mutation 12 56031321 G T 48 50 BRCA TCGA-E2-A1IE NPAP1 SNP Missense_Mutation 15 24922753 C T 20 50 BRCA TCGA-E2-A1IE MSLNL SNP Missense_Mutation 16 832874 C T 23 30 BRCA TCGA-E2-A1IE ZNF175 SNP Missense_Mutation 19 52091101 G A 36 48 BRCA TCGA-E2-A1IE MUC16 SNP Missense_Mutation 19 9058547 C A 20 48 BRCA TCGA-E2-A1IE TTN SNP Missense_Mutation 2 179444052 G A 39 87 BRCA TCGA-E2-A1IE TTN SNP Missense_Mutation 2 179479294 A G 6 93 BRCA TCGA-E2-A1IE HNF4A SNP Silent 20 43052731 C T 17 86 BRCA TCGA-E2-A1IE ZCCHC12 SNP Missense_Mutation 23 117960036 G A 48 65 BRCA TCGA-E2-A1IE KIAA2018 DEL In_Frame_Del 3 113376111 TGC - 63 73 BRCA TCGA-E2-A1IE DCBLD2 SNP Silent 3 98538119 C T 27 50 BRCA TCGA-E2-A1IE MICAL1 SNP Missense_Mutation 6 109766645 C T 30 53 BRCA TCGA-E2-A1IE HIST1H3B SNP Missense_Mutation 6 26032045 C T 31 98 BRCA TCGA-E2-A1IE CCND3 SNP Missense_Mutation 6 41903724 G C 43 73 BRCA TCGA-E2-A1IE FBXL18 SNP Missense_Mutation 7 5545048 A C 15 86 BRCA TCGA-E2-A1IE DOCK5 SNP Missense_Mutation 8 25189823 C A 24 62 BRCA TCGA-E2-A1IE PCSK5 SNP Missense_Mutation 9 78799604 G A 39 74 BRCA TCGA-E2-A1IF PPP1R12B SNP Missense_Mutation 1 202411672 T C 54 61 BRCA TCGA-E2-A1IF AHCTF1 SNP Missense_Mutation 1 247016578 C T 21 55 BRCA TCGA-E2-A1IF KCNA4 SNP Missense_Mutation 11 30033418 G A 37 83 BRCA TCGA-E2-A1IF STAB2 SNP Silent 12 104100710 C T 27 21 BRCA TCGA-E2-A1IF TBX3 SNP Missense_Mutation 12 115120669 A G 5 92 BRCA TCGA-E2-A1IF PLA2G1B SNP Silent 12 120763747 C A 30 50 BRCA TCGA-E2-A1IF COQ5 SNP Missense_Mutation 12 120966842 C A 23 44 BRCA TCGA-E2-A1IF KRAS SNP Missense_Mutation 12 25398284 C T 18 99 BRCA TCGA-E2-A1IF CYSLTR2 SNP Missense_Mutation 13 49281768 C T 19 51 BRCA TCGA-E2-A1IF ZNF747 SNP Nonsense_Mutation 16 30545573 C T 22 78 BRCA TCGA-E2-A1IF SLC41A3 SNP Missense_Mutation 3 125769871 A G 6 87 BRCA TCGA-E2-A1IF PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A1IF KLHL31 SNP Missense_Mutation 6 53519409 A C 16 67 BRCA TCGA-E2-A1IF C7orf63 INS Splice_Site 7 89938682 - T 44 86 BRCA TCGA-E2-A1IF APBA1 SNP Missense_Mutation 9 72073092 A C 4 69 BRCA TCGA-E2-A1IF FAM120A SNP Missense_Mutation 9 96238607 T C 53 92 BRCA TCGA-E2-A1IG OBSCN SNP Missense_Mutation 1 228480325 T C 59 91 BRCA TCGA-E2-A1IG MORN1 SNP Missense_Mutation 1 2304001 G C 41 74 BRCA TCGA-E2-A1IG ZNF683 SNP Silent 1 26688661 C T 19 51 BRCA TCGA-E2-A1IG ARID1A SNP Missense_Mutation 1 27106363 T C 58 91 BRCA TCGA-E2-A1IG MIER1 INS Splice_Site 1 67424667 - T 36 87 BRCA TCGA-E2-A1IG CCBL2 SNP Missense_Mutation 1 89434456 T C 52 89 BRCA TCGA-E2-A1IG BTBD16 INS Frame_Shift_Ins 10 124097568 - T 48 76 BRCA TCGA-E2-A1IG EBF3 SNP Missense_Mutation 10 131640515 A T 14 93 BRCA TCGA-E2-A1IG DIP2C SNP Silent 10 329357 G A 38 50 BRCA TCGA-E2-A1IG LRRTM3 SNP Missense_Mutation 10 68686978 G A 37 84 BRCA TCGA-E2-A1IG DNA2 SNP Missense_Mutation 10 70182350 A C 8 92 BRCA TCGA-E2-A1IG HSPA8 DEL In_Frame_Del 11 122930239 GAA - 45 98 BRCA TCGA-E2-A1IG SELPLG DEL In_Frame_Del 12 109017672 GCA - 42 43 BRCA TCGA-E2-A1IG SPTB SNP Silent 14 65220359 G A 39 38 BRCA TCGA-E2-A1IG GOLGA6L6 SNP Missense_Mutation 15 20739675 C T 31 51 BRCA TCGA-E2-A1IG USP7 SNP Silent 16 8997212 G A 40 44 BRCA TCGA-E2-A1IG DNAH9 SNP Silent 17 11572851 C T 19 47 BRCA TCGA-E2-A1IG MAP2K4 SNP Nonsense_Mutation 17 12032459 G T 45 98 BRCA TCGA-E2-A1IG NOS2 SNP Missense_Mutation 17 26116644 C T 19 35 BRCA TCGA-E2-A1IG C17orf50 SNP Missense_Mutation 17 34091079 G T 38 57 BRCA TCGA-E2-A1IG TBC1D3 SNP Missense_Mutation 17 36339584 G T 47 67 BRCA TCGA-E2-A1IG SPPL2C SNP Missense_Mutation 17 43924233 C T 26 71 BRCA TCGA-E2-A1IG ABCA10 SNP Splice_Site 17 67212357 C A 18 70 BRCA TCGA-E2-A1IG FASN DEL In_Frame_Del 17 80046886 GCTCAG - 46 51 BRCA TCGA-E2-A1IG GREB1L SNP Missense_Mutation 18 19031101 C T 18 64 BRCA TCGA-E2-A1IG DYM SNP Silent 18 46808427 C T 25 52 BRCA TCGA-E2-A1IG KCNH7 SNP Missense_Mutation 2 163693155 C T 31 100 BRCA TCGA-E2-A1IG PGAP1 SNP Missense_Mutation 2 197707454 A G 16 67 BRCA TCGA-E2-A1IG SLC16A14 SNP Missense_Mutation 2 230910775 G A 40 77 BRCA TCGA-E2-A1IG EML6 SNP Silent 2 55144045 C T 31 51 BRCA TCGA-E2-A1IG WRB DEL Splice_Site 21 40762623 GATGTCCAGGGTGCT - 33 87 BRCA TCGA-E2-A1IG COL4A5 INS Frame_Shift_Ins 23 107834827 - A 21 69 BRCA TCGA-E2-A1IG UMPS SNP Missense_Mutation 3 124457125 C A 30 49 BRCA TCGA-E2-A1IG ITPR1 SNP Missense_Mutation 3 4730264 C A 28 77 BRCA TCGA-E2-A1IG HERC6 SNP Missense_Mutation 4 89363548 A G 9 66 BRCA TCGA-E2-A1IG DIAPH1 SNP Missense_Mutation 5 140960365 A C 4 70 BRCA TCGA-E2-A1IG CENPK SNP Missense_Mutation 5 64824380 T A 52 48 BRCA TCGA-E2-A1IG FRK SNP Missense_Mutation 6 116381284 C G 31 44 BRCA TCGA-E2-A1IG HIVEP1 SNP Missense_Mutation 6 12131113 G A 37 100 BRCA TCGA-E2-A1IG SYNE1 SNP Silent 6 152861113 G A 45 67 BRCA TCGA-E2-A1IG GPR110 SNP Silent 6 46975029 T C 50 13 BRCA TCGA-E2-A1IG GPR111 SNP Missense_Mutation 6 47646834 C G 17 39 BRCA TCGA-E2-A1IG BACH2 SNP Missense_Mutation 6 90660252 A T 9 88 BRCA TCGA-E2-A1IG SDK1 SNP Silent 7 4249712 C T 19 47 BRCA TCGA-E2-A1IG DLGAP2 SNP Missense_Mutation 8 1497301 C T 27 51 BRCA TCGA-E2-A1IG HOOK3 SNP Missense_Mutation 8 42798513 C A 25 81 BRCA TCGA-E2-A1IG PREX2 SNP Missense_Mutation 8 68965476 G A 39 100 BRCA TCGA-E2-A1IG GRIN3A SNP Silent 9 104433299 G A 33 57 BRCA TCGA-E2-A1IH SLC16A1 SNP Missense_Mutation 1 113471850 G C 45 62 BRCA TCGA-E2-A1IH SELP SNP Missense_Mutation 1 169562905 G A 40 52 BRCA TCGA-E2-A1IH KCNH1 SNP Missense_Mutation 1 211263988 C T 31 98 BRCA TCGA-E2-A1IH GJB5 SNP Missense_Mutation 1 35223650 A C 5 64 BRCA TCGA-E2-A1IH YME1L1 SNP Missense_Mutation 10 27437888 A G 9 51 BRCA TCGA-E2-A1IH JMJD1C SNP Missense_Mutation 10 64968401 C T 30 99 BRCA TCGA-E2-A1IH CDH23 SNP Missense_Mutation 10 73326553 G A 43 96 BRCA TCGA-E2-A1IH PTEN DEL Frame_Shift_Del 10 89690810 GAAA - 45 98 BRCA TCGA-E2-A1IH SART1 SNP Missense_Mutation 11 65746121 G T 45 91 BRCA TCGA-E2-A1IH RPS6KB2 SNP Missense_Mutation 11 67200221 G A 45 96 BRCA TCGA-E2-A1IH PPFIA1 SNP Silent 11 70171069 G C 45 48 BRCA TCGA-E2-A1IH C2CD3 SNP Missense_Mutation 11 73872571 G T 44 81 BRCA TCGA-E2-A1IH TAOK3 SNP Silent 12 118610295 C T 28 68 BRCA TCGA-E2-A1IH GALNT8 SNP Silent 12 4855388 C T 29 53 BRCA TCGA-E2-A1IH KRT1 SNP Missense_Mutation 12 53074048 G A 38 57 BRCA TCGA-E2-A1IH GAS6 SNP Missense_Mutation 13 114531617 G A 38 82 BRCA TCGA-E2-A1IH RB1 SNP Silent 13 48954373 T C 49 77 BRCA TCGA-E2-A1IH RNF31 SNP Missense_Mutation 14 24619840 C G 29 60 BRCA TCGA-E2-A1IH MPP5 SNP Missense_Mutation 14 67790494 C G 31 76 BRCA TCGA-E2-A1IH RYR3 SNP Silent 15 33954810 G A 37 40 BRCA TCGA-E2-A1IH DMXL2 SNP Missense_Mutation 15 51742471 C T 18 97 BRCA TCGA-E2-A1IH ATP2A1 SNP Missense_Mutation 16 28913342 C G 32 69 BRCA TCGA-E2-A1IH NFATC3 SNP Splice_site 16 68215432 G A 43 74 BRCA TCGA-E2-A1IH CDH1 DEL Frame_Shift_Del 16 68855977 AGAACCTCGAACTATATTCTTCTGTG - 7 52 BRCA TCGA-E2-A1IH CDH1 SNP Missense_Mutation 16 68856011 C T 30 74 BRCA TCGA-E2-A1IH SPAG9 SNP Missense_Mutation 17 49067939 T C 60 57 BRCA TCGA-E2-A1IH ABCA8 SNP Missense_Mutation 17 66928618 G A 45 68 BRCA TCGA-E2-A1IH NETO1 SNP Missense_Mutation 18 70417314 G T 40 53 BRCA TCGA-E2-A1IH CACNA1A SNP Missense_Mutation 19 13368334 C T 29 97 BRCA TCGA-E2-A1IH WDR87 SNP Missense_Mutation 19 38382389 G C 41 48 BRCA TCGA-E2-A1IH PAK4 SNP Missense_Mutation 19 39660228 C T 30 90 BRCA TCGA-E2-A1IH CCDC8 SNP Silent 19 46914499 G A 39 15 BRCA TCGA-E2-A1IH PPP2R1A SNP Missense_Mutation 19 52705251 G C 45 89 BRCA TCGA-E2-A1IH ZNF578 SNP Missense_Mutation 19 53014257 A T 16 57 BRCA TCGA-E2-A1IH TTN SNP Missense_Mutation 2 179605501 C G 32 53 BRCA TCGA-E2-A1IH CCDC141 SNP Missense_Mutation 2 179718227 G A 45 69 BRCA TCGA-E2-A1IH HSPD1 INS Frame_Shift_Ins 2 198363536 - T 44 99 BRCA TCGA-E2-A1IH TRAK2 SNP Missense_Mutation 2 202245814 T C 57 54 BRCA TCGA-E2-A1IH PLEKHH2 SNP Missense_Mutation 2 43992655 C A 18 49 BRCA TCGA-E2-A1IH WDR92 SNP Missense_Mutation 2 68371831 C T 32 67 BRCA TCGA-E2-A1IH APLF SNP Missense_Mutation 2 68740758 A T 12 75 BRCA TCGA-E2-A1IH RAB36 INS In_Frame_Ins 22 23498327 - CTGAGAAAA 54 51 BRCA TCGA-E2-A1IH RAB36 INS Frame_Shift_Ins 22 23498334 - A 18 37 BRCA TCGA-E2-A1IH SMARCA1 SNP Splice_Site 23 128650475 C G 32 98 BRCA TCGA-E2-A1IH FANCB SNP Missense_Mutation 23 14871186 T A 50 49 BRCA TCGA-E2-A1IH SLC7A3 SNP Missense_Mutation 23 70149574 G T 41 94 BRCA TCGA-E2-A1IH UROC1 SNP Missense_Mutation 3 126222869 C T 29 77 BRCA TCGA-E2-A1IH SH3BP5 SNP Missense_Mutation 3 15300446 G A 38 50 BRCA TCGA-E2-A1IH TTC14 SNP Missense_Mutation 3 180328183 C G 29 48 BRCA TCGA-E2-A1IH ZNF619 SNP Nonsense_Mutation 3 40528668 C T 29 49 BRCA TCGA-E2-A1IH PRICKLE2 SNP Missense_Mutation 3 64142855 A G 7 93 BRCA TCGA-E2-A1IH NUP155 SNP Silent 5 37330153 G T 37 69 BRCA TCGA-E2-A1IH DDX4 SNP Missense_Mutation 5 55042014 G C 41 61 BRCA TCGA-E2-A1IH CEP85L SNP Silent 6 118886718 G T 37 57 BRCA TCGA-E2-A1IH SYTL3 SNP Splice_site 6 159184541 A C 3 53 BRCA TCGA-E2-A1IH MYO6 SNP Missense_Mutation 6 76623827 G A 45 100 BRCA TCGA-E2-A1IH DOPEY1 SNP Nonsense_Mutation 6 83869520 C A 29 97 BRCA TCGA-E2-A1IH THAP5 SNP Missense_Mutation 7 108204886 A G 15 48 BRCA TCGA-E2-A1IH MTSS1 SNP Silent 8 125711807 G A 40 40 BRCA TCGA-E2-A1IH OR1L8 SNP Missense_Mutation 9 125329986 G T 33 48 BRCA TCGA-E2-A1IH GLE1 SNP Missense_Mutation 9 131287520 G A 39 72 BRCA TCGA-E2-A1IH PSIP1 SNP Splice_Site 9 15489983 C A 18 100 BRCA TCGA-E2-A1II TUBG1 SNP Silent 17 40762178 G A 35 68 BRCA TCGA-E2-A1II TP53 SNP Splice_Site 17 7578556 T G 55 80 BRCA TCGA-E2-A1II DCC SNP Missense_Mutation 18 50278619 C G 32 95 BRCA TCGA-E2-A1II SAMD1 SNP Missense_Mutation 19 14199928 T G 59 58 BRCA TCGA-E2-A1II SLC5A5 SNP Missense_Mutation 19 17986867 G A 38 41 BRCA TCGA-E2-A1II GRIK5 SNP Missense_Mutation 19 42569462 C T 23 69 BRCA TCGA-E2-A1II BCL2L11 SNP Missense_Mutation 2 111886207 T A 58 52 BRCA TCGA-E2-A1II PLCG1 SNP Missense_Mutation 20 39798164 T A 52 91 BRCA TCGA-E2-A1II GTPBP5 SNP Missense_Mutation 20 60772932 C G 31 89 BRCA TCGA-E2-A1II ZNF275 SNP Silent 23 152612458 G A 36 54 BRCA TCGA-E2-A1II IL1RAPL1 SNP Silent 23 29935696 T G 64 52 BRCA TCGA-E2-A1II SHROOM4 SNP Missense_Mutation 23 50377007 T G 55 49 BRCA TCGA-E2-A1II HUWE1 SNP Missense_Mutation 23 53562452 A C 1 85 BRCA TCGA-E2-A1II FAAH2 SNP Silent 23 57358083 A G 7 46 BRCA TCGA-E2-A1II PCDH19 SNP Missense_Mutation 23 99662058 C G 26 99 BRCA TCGA-E2-A1II PCDH10 SNP Silent 4 134073920 C T 21 70 BRCA TCGA-E2-A1II MAML1 SNP Missense_Mutation 5 179200977 A T 4 48 BRCA TCGA-E2-A1II NMBR SNP Missense_Mutation 6 142396871 T A 58 88 BRCA TCGA-E2-A1II TMEM181 SNP Silent 6 159029468 G C 48 49 BRCA TCGA-E2-A1II ZNF292 SNP Missense_Mutation 6 87965080 T G 64 75 BRCA TCGA-E2-A1II CCM2 SNP Missense_Mutation 7 45113873 G A 38 70 BRCA TCGA-E2-A1II UBR5 SNP Missense_Mutation 8 103297830 T C 50 93 BRCA TCGA-E2-A1II WHSC1L1 SNP Missense_Mutation 8 38162915 C T 19 98 BRCA TCGA-E2-A1IJ OPN4 SNP Missense_Mutation 10 88421081 G A 40 65 BRCA TCGA-E2-A1IJ ATM SNP Missense_Mutation 11 108098605 G T 46 65 BRCA TCGA-E2-A1IJ TBX5 SNP Missense_Mutation 12 114793417 C T 19 62 BRCA TCGA-E2-A1IJ TSC22D1 SNP Missense_Mutation 13 45010182 T C 49 91 BRCA TCGA-E2-A1IJ SLX4 SNP Missense_Mutation 16 3656563 C A 29 54 BRCA TCGA-E2-A1IJ CDH1 INS Frame_Shift_Ins 16 68857397 - T 36 74 BRCA TCGA-E2-A1IJ TNRC6C SNP Nonsense_Mutation 17 76089144 G A 44 99 BRCA TCGA-E2-A1IJ SOGA1 SNP Silent 20 35443694 C A 29 61 BRCA TCGA-E2-A1IJ FAM153A SNP Missense_Mutation 5 177171957 G A 40 50 BRCA TCGA-E2-A1IJ C6orf57 SNP Missense_Mutation 6 71298411 G T 38 97 BRCA TCGA-E2-A1IJ TAS2R38 SNP Missense_Mutation 7 141672880 G T 42 51 BRCA TCGA-E2-A1IJ GPNMB SNP Missense_Mutation 7 23309653 A C 7 60 BRCA TCGA-E2-A1IJ GSR SNP Silent 8 30557645 G A 34 50 BRCA TCGA-E2-A1IJ NUP214 SNP Silent 9 134027158 T G 56 40 BRCA TCGA-E2-A1IK SLC9A1 SNP Missense_Mutation 1 27427750 G T 40 96 BRCA TCGA-E2-A1IK PTP4A2 SNP Missense_Mutation 1 32384627 T A 51 89 BRCA TCGA-E2-A1IK MACF1 SNP Missense_Mutation 1 39798985 A G 9 60 BRCA TCGA-E2-A1IK RASGEF1A SNP Missense_Mutation 10 43696327 T A 59 82 BRCA TCGA-E2-A1IK PIK3C2G SNP Missense_Mutation 12 18443835 A C 9 68 BRCA TCGA-E2-A1IK ADAMTSL3 SNP Missense_Mutation 15 84506850 T A 55 92 BRCA TCGA-E2-A1IK CLEC16A SNP Missense_Mutation 16 11154805 G A 37 58 BRCA TCGA-E2-A1IK RPGRIP1L SNP Silent 16 53706824 T C 60 50 BRCA TCGA-E2-A1IK CMIP SNP Missense_Mutation 16 81737574 G T 39 83 BRCA TCGA-E2-A1IK NWD1 SNP Silent 19 16905357 C T 31 41 BRCA TCGA-E2-A1IK NR2C2 SNP Missense_Mutation 3 15094988 G C 34 56 BRCA TCGA-E2-A1IK SETD2 INS Frame_Shift_Ins 3 47058736 - T 40 48 BRCA TCGA-E2-A1IK SHROOM1 SNP Missense_Mutation 5 132159726 C T 31 57 BRCA TCGA-E2-A1IL FMN2 SNP Missense_Mutation 1 240370352 C T 30 86 BRCA TCGA-E2-A1IL JAM3 SNP Missense_Mutation 11 134014849 G A 38 57 BRCA TCGA-E2-A1IL TNKS1BP1 SNP Silent 11 57077320 G A 38 28 BRCA TCGA-E2-A1IL RELT SNP Silent 11 73103329 T G 55 31 BRCA TCGA-E2-A1IL AGBL1 SNP Missense_Mutation 15 86768172 G T 46 79 BRCA TCGA-E2-A1IL CNTD1 DEL Frame_Shift_Del 17 40956304 AA - 13 59 BRCA TCGA-E2-A1IL ZNF232 SNP Missense_Mutation 17 5009336 T G 51 57 BRCA TCGA-E2-A1IL PGPEP1 SNP Silent 19 18474258 C T 24 48 BRCA TCGA-E2-A1IL ZNF846 DEL Frame_Shift_Del 19 9868344 CG - 31 55 BRCA TCGA-E2-A1IL RGPD4 SNP Silent 2 108473295 G T 42 46 BRCA TCGA-E2-A1IL PLEKHB2 SNP Missense_Mutation 2 131883435 G A 46 77 BRCA TCGA-E2-A1IL PTPRT SNP Silent 20 40828001 G T 43 36 BRCA TCGA-E2-A1IL ARFGEF2 SNP Missense_Mutation 20 47607613 T C 56 93 BRCA TCGA-E2-A1IL PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A1IL ANKRD17 SNP Silent 4 73942663 A C 11 56 BRCA TCGA-E2-A1IL GFOD1 SNP Silent 6 13365419 G A 38 39 BRCA TCGA-E2-A1IL SYNE1 SNP Nonsense_Mutation 6 152751745 G A 37 72 BRCA TCGA-E2-A1IL SERPINB6 SNP Missense_Mutation 6 2955880 C T 23 73 BRCA TCGA-E2-A1IL TBCC SNP Missense_Mutation 6 42712938 A G 13 88 BRCA TCGA-E2-A1IL NEUROD6 SNP Missense_Mutation 7 31378167 G A 38 74 BRCA TCGA-E2-A1IL AVL9 SNP Missense_Mutation 7 32598971 T G 61 54 BRCA TCGA-E2-A1IL NME8 SNP Missense_Mutation 7 37896882 G C 34 70 BRCA TCGA-E2-A1IL SIT1 SNP Silent 9 35649944 G A 39 21 BRCA TCGA-E2-A1IN UBE4B SNP Silent 1 10166258 C G 32 58 BRCA TCGA-E2-A1IN CELSR2 SNP Missense_Mutation 1 109793212 C T 31 57 BRCA TCGA-E2-A1IN C1orf127 SNP Missense_Mutation 1 11008331 C G 30 61 BRCA TCGA-E2-A1IN C1orf127 SNP Missense_Mutation 1 11008427 G T 47 54 BRCA TCGA-E2-A1IN MTOR SNP Missense_Mutation 1 11270881 C G 32 99 BRCA TCGA-E2-A1IN NRAS SNP Missense_Mutation 1 115251203 C T 29 100 BRCA TCGA-E2-A1IN CD58 SNP Missense_Mutation 1 117078619 G A 45 54 BRCA TCGA-E2-A1IN CGN SNP Missense_Mutation 1 151509297 G A 40 94 BRCA TCGA-E2-A1IN PGLYRP3 SNP Silent 1 153283097 G C 41 40 BRCA TCGA-E2-A1IN DCST2 SNP Nonsense_Mutation 1 154991075 G C 45 59 BRCA TCGA-E2-A1IN FCGR3A SNP Silent 1 161518251 G C 33 52 BRCA TCGA-E2-A1IN SPATA21 SNP Missense_Mutation 1 16736350 C G 32 54 BRCA TCGA-E2-A1IN SERPINC1 SNP Missense_Mutation 1 173884020 A G 7 72 BRCA TCGA-E2-A1IN FAM5B SNP Missense_Mutation 1 177250316 G T 45 71 BRCA TCGA-E2-A1IN PTPRC SNP Nonsense_Mutation 1 198691597 C G 29 61 BRCA TCGA-E2-A1IN DDX59 SNP Missense_Mutation 1 200635322 C G 29 63 BRCA TCGA-E2-A1IN PIGR SNP Missense_Mutation 1 207106470 C G 29 50 BRCA TCGA-E2-A1IN PCNXL2 SNP Nonsense_Mutation 1 233161098 C A 31 99 BRCA TCGA-E2-A1IN BSDC1 SNP Missense_Mutation 1 32843862 G A 45 78 BRCA TCGA-E2-A1IN RAVER2 SNP Silent 1 65243506 C T 32 53 BRCA TCGA-E2-A1IN PTGER3 SNP Silent 1 71512883 C T 23 49 BRCA TCGA-E2-A1IN KIAA1107 SNP Missense_Mutation 1 92649701 G C 33 75 BRCA TCGA-E2-A1IN WDR11 SNP Missense_Mutation 10 122622406 A G 1 93 BRCA TCGA-E2-A1IN LRRC27 SNP Missense_Mutation 10 134161507 G C 33 56 BRCA TCGA-E2-A1IN PFKP SNP Missense_Mutation 10 3149487 G A 45 85 BRCA TCGA-E2-A1IN PRKG1 SNP Missense_Mutation 10 53227489 A T 3 77 BRCA TCGA-E2-A1IN FAM208B SNP Missense_Mutation 10 5788925 C G 29 55 BRCA TCGA-E2-A1IN CTNNA3 SNP Missense_Mutation 10 67862936 C G 32 60 BRCA TCGA-E2-A1IN TET1 SNP Missense_Mutation 10 70450589 C G 24 56 BRCA TCGA-E2-A1IN PSAP SNP Silent 10 73579279 C T 32 68 BRCA TCGA-E2-A1IN PDE6C SNP Missense_Mutation 10 95415556 G C 45 83 BRCA TCGA-E2-A1IN DCUN1D5 SNP Missense_Mutation 11 102935019 C T 29 100 BRCA TCGA-E2-A1IN PRDM11 SNP Silent 11 45203410 C T 30 52 BRCA TCGA-E2-A1IN OR9G1 SNP Silent 11 56468331 A C 5 36 BRCA TCGA-E2-A1IN ZDHHC5 SNP Silent 11 57457520 C T 26 66 BRCA TCGA-E2-A1IN SYT12 SNP Missense_Mutation 11 66807366 G C 45 82 BRCA TCGA-E2-A1IN ADRBK1 SNP Silent 11 67048617 C T 27 41 BRCA TCGA-E2-A1IN OR10A6 SNP Missense_Mutation 11 7949551 C G 31 49 BRCA TCGA-E2-A1IN FAT3 SNP Silent 11 92568091 G A 47 51 BRCA TCGA-E2-A1IN LHX5 SNP Missense_Mutation 12 113906151 G T 44 69 BRCA TCGA-E2-A1IN SLC15A5 SNP Missense_Mutation 12 16430536 A C 5 48 BRCA TCGA-E2-A1IN CNTN1 SNP Missense_Mutation 12 41419117 G C 45 58 BRCA TCGA-E2-A1IN ADAMTS20 SNP Missense_Mutation 12 43896138 C T 29 54 BRCA TCGA-E2-A1IN KRT79 SNP Silent 12 53225306 G C 33 66 BRCA TCGA-E2-A1IN STAC3 SNP Missense_Mutation 12 57637603 C G 30 96 BRCA TCGA-E2-A1IN DTX3 SNP Missense_Mutation 12 58002372 G A 45 94 BRCA TCGA-E2-A1IN LLPH SNP Silent 12 66522788 G A 45 65 BRCA TCGA-E2-A1IN PPFIA2 SNP Missense_Mutation 12 82147853 G A 37 75 BRCA TCGA-E2-A1IN DEGS2 SNP Missense_Mutation 14 100625894 C G 31 90 BRCA TCGA-E2-A1IN TDRD9 SNP Missense_Mutation 14 104506621 G A 37 74 BRCA TCGA-E2-A1IN OR4N5 SNP Missense_Mutation 14 20612635 A G 16 46 BRCA TCGA-E2-A1IN KTN1 SNP Silent 14 56107112 C T 32 55 BRCA TCGA-E2-A1IN ACOT1 SNP Missense_Mutation 14 74004171 G A 41 76 BRCA TCGA-E2-A1IN PPP4R4 SNP Missense_Mutation 14 94718190 C G 32 51 BRCA TCGA-E2-A1IN CERS3 SNP Missense_Mutation 15 100996101 C T 29 48 BRCA TCGA-E2-A1IN DUOX1 SNP Missense_Mutation 15 45454016 C G 32 58 BRCA TCGA-E2-A1IN FBN1 SNP Missense_Mutation 15 48787352 G A 38 100 BRCA TCGA-E2-A1IN MYO9A SNP Missense_Mutation 15 72180453 G A 45 58 BRCA TCGA-E2-A1IN SENP8 SNP Missense_Mutation 15 72432133 G A 45 88 BRCA TCGA-E2-A1IN SEMA7A SNP Missense_Mutation 15 74704309 G A 46 65 BRCA TCGA-E2-A1IN TBC1D2B SNP Missense_Mutation 15 78305373 C T 29 59 BRCA TCGA-E2-A1IN CRTC3 SNP Missense_Mutation 15 91136895 C T 31 70 BRCA TCGA-E2-A1IN CACNA1H SNP Missense_Mutation 16 1256238 A G 10 85 BRCA TCGA-E2-A1IN MKL2 SNP Silent 16 14339391 C T 29 53 BRCA TCGA-E2-A1IN HIRIP3 SNP Missense_Mutation 16 30004965 C T 29 57 BRCA TCGA-E2-A1IN ZNF629 SNP Nonsense_Mutation 16 30793337 G C 45 65 BRCA TCGA-E2-A1IN VKORC1 SNP Silent 16 31105925 G C 33 63 BRCA TCGA-E2-A1IN ITGAM SNP Silent 16 31336602 G T 47 54 BRCA TCGA-E2-A1IN C16orf5 SNP Missense_Mutation 16 4563801 G C 35 89 BRCA TCGA-E2-A1IN MYH13 SNP Missense_Mutation 17 10206539 A T 10 52 BRCA TCGA-E2-A1IN MYH2 SNP Silent 17 10447097 G A 45 72 BRCA TCGA-E2-A1IN SPAG5 SNP Missense_Mutation 17 26918847 C G 32 66 BRCA TCGA-E2-A1IN MAPT SNP Missense_Mutation 17 44067416 C G 32 58 BRCA TCGA-E2-A1IN ACSF2 SNP Silent 17 48538641 C T 32 52 BRCA TCGA-E2-A1IN MPO SNP Silent 17 56356465 G C 37 39 BRCA TCGA-E2-A1IN DLG4 SNP Missense_Mutation 17 7100285 G A 37 61 BRCA TCGA-E2-A1IN POLR2A SNP Silent 17 7404270 G A 33 69 BRCA TCGA-E2-A1IN TP53 SNP Missense_Mutation 17 7578460 A C 10 89 BRCA TCGA-E2-A1IN DNAH2 SNP Missense_Mutation 17 7736442 G C 33 76 BRCA TCGA-E2-A1IN CHD3 SNP Missense_Mutation 17 7796626 C G 30 94 BRCA TCGA-E2-A1IN FASN SNP Missense_Mutation 17 80038680 C G 32 68 BRCA TCGA-E2-A1IN ARHGEF15 SNP Silent 17 8216367 G A 38 40 BRCA TCGA-E2-A1IN LAMA3 SNP Silent 18 21417017 C T 17 64 BRCA TCGA-E2-A1IN ZNF396 SNP Missense_Mutation 18 32949307 G C 33 72 BRCA TCGA-E2-A1IN ABCA7 SNP Nonsense_Mutation 19 1045035 C G 29 63 BRCA TCGA-E2-A1IN CIRBP SNP Missense_Mutation 19 1272306 C G 30 57 BRCA TCGA-E2-A1IN APC2 SNP Missense_Mutation 19 1465771 G A 37 56 BRCA TCGA-E2-A1IN RFXANK SNP Splice_site 19 19312527 G A 45 61 BRCA TCGA-E2-A1IN ZNF536 SNP Silent 19 31039733 C T 29 24 BRCA TCGA-E2-A1IN APBA3 SNP Missense_Mutation 19 3759707 C T 32 58 BRCA TCGA-E2-A1IN SUPT5H SNP Silent 19 39955656 C G 29 77 BRCA TCGA-E2-A1IN ZNF574 SNP Missense_Mutation 19 42585045 G A 45 81 BRCA TCGA-E2-A1IN ZNF235 SNP Missense_Mutation 19 44791480 C G 32 73 BRCA TCGA-E2-A1IN CEACAM16 SNP Silent 19 45209092 C T 21 58 BRCA TCGA-E2-A1IN NUCB1 SNP Silent 19 49424449 G A 45 75 BRCA TCGA-E2-A1IN CCDC155 SNP Missense_Mutation 19 49902741 G C 45 57 BRCA TCGA-E2-A1IN SCAF1 SNP Silent 19 50161137 C T 23 43 BRCA TCGA-E2-A1IN ZNF432 SNP Missense_Mutation 19 52537854 C G 17 60 BRCA TCGA-E2-A1IN GCC2 SNP Silent 2 109102990 A G 7 42 BRCA TCGA-E2-A1IN NEB SNP Silent 2 152541307 A G 8 52 BRCA TCGA-E2-A1IN WDR35 SNP Silent 2 20113974 G A 33 54 BRCA TCGA-E2-A1IN FAM124B SNP Missense_Mutation 2 225244906 A C 3 43 BRCA TCGA-E2-A1IN SP110 SNP Missense_Mutation 2 231077589 C T 20 50 BRCA TCGA-E2-A1IN GPR113 SNP Silent 2 26534505 G A 45 51 BRCA TCGA-E2-A1IN RTN4 SNP Missense_Mutation 2 55253275 C T 29 86 BRCA TCGA-E2-A1IN KCMF1 SNP Missense_Mutation 2 85280380 G A 33 75 BRCA TCGA-E2-A1IN IDH3B SNP Missense_Mutation 20 2640352 G C 46 73 BRCA TCGA-E2-A1IN SGK2 SNP Missense_Mutation 20 42204933 G A 39 70 BRCA TCGA-E2-A1IN STK4 SNP Missense_Mutation 20 43615911 G A 33 100 BRCA TCGA-E2-A1IN SLC12A5 SNP Missense_Mutation 20 44684870 G A 33 96 BRCA TCGA-E2-A1IN BCAS4 SNP Missense_Mutation 20 49493134 C T 31 41 BRCA TCGA-E2-A1IN ATP9A SNP Missense_Mutation 20 50286620 G C 45 77 BRCA TCGA-E2-A1IN COL9A3 SNP Silent 20 61458148 G A 41 50 BRCA TCGA-E2-A1IN RTEL1 SNP Silent 20 62293270 C T 29 51 BRCA TCGA-E2-A1IN URB1 SNP Silent 21 33709732 G A 38 21 BRCA TCGA-E2-A1IN SYNJ1 SNP Splice_Site 21 34012090 C G 32 89 BRCA TCGA-E2-A1IN DEPDC5 SNP Silent 22 32180825 G T 45 62 BRCA TCGA-E2-A1IN APOL6 SNP Missense_Mutation 22 36054859 C G 32 75 BRCA TCGA-E2-A1IN PKDREJ SNP Silent 22 46656331 A T 3 43 BRCA TCGA-E2-A1IN ODZ1 SNP Missense_Mutation 23 123539030 C T 32 97 BRCA TCGA-E2-A1IN DCAF12L2 SNP Silent 23 125298870 A T 11 48 BRCA TCGA-E2-A1IN PHF6 SNP Missense_Mutation 23 133547523 G A 45 92 BRCA TCGA-E2-A1IN MOSPD2 SNP Missense_Mutation 23 14915213 C G 29 67 BRCA TCGA-E2-A1IN PTCHD1 SNP Missense_Mutation 23 23397794 G C 33 64 BRCA TCGA-E2-A1IN GNL3L SNP Splice_Site 23 54586952 G A 33 81 BRCA TCGA-E2-A1IN C3orf30 SNP Missense_Mutation 3 118865557 G T 44 44 BRCA TCGA-E2-A1IN SEMA5B SNP Nonsense_Mutation 3 122642520 G A 47 99 BRCA TCGA-E2-A1IN ATR SNP Missense_Mutation 3 142266743 C T 32 88 BRCA TCGA-E2-A1IN ANKRD28 SNP Missense_Mutation 3 15727589 C T 32 100 BRCA TCGA-E2-A1IN PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-E2-A1IN PIK3CA SNP Missense_Mutation 3 178947827 G T 48 98 BRCA TCGA-E2-A1IN LRCH3 SNP Nonsense_Mutation 3 197574833 G T 45 81 BRCA TCGA-E2-A1IN SCN5A DNP Missense_Mutation 3 38645493 TG AA 55 52 BRCA TCGA-E2-A1IN SLC25A38 SNP Missense_Mutation 3 39425264 G A 33 71 BRCA TCGA-E2-A1IN COL7A1 SNP Missense_Mutation 3 48609475 C T 29 89 BRCA TCGA-E2-A1IN HEMK1 SNP Missense_Mutation 3 50608618 C T 29 61 BRCA TCGA-E2-A1IN CACNA1D SNP Missense_Mutation 3 53531432 C G 32 88 BRCA TCGA-E2-A1IN DNASE1L3 SNP Missense_Mutation 3 58190568 C G 29 79 BRCA TCGA-E2-A1IN PRICKLE2 SNP Silent 3 64133158 G A 46 58 BRCA TCGA-E2-A1IN AGXT2L1 SNP Missense_Mutation 4 109669230 C G 32 62 BRCA TCGA-E2-A1IN UVSSA SNP Silent 4 1348587 C G 29 56 BRCA TCGA-E2-A1IN FBXL5 SNP Silent 4 15638232 G A 45 72 BRCA TCGA-E2-A1IN POLN SNP Missense_Mutation 4 2210055 C G 32 52 BRCA TCGA-E2-A1IN LGI2 SNP Missense_Mutation 4 25005818 C G 18 88 BRCA TCGA-E2-A1IN FAM114A1 SNP Missense_Mutation 4 38907253 G A 45 53 BRCA TCGA-E2-A1IN PPEF2 SNP Missense_Mutation 4 76805791 G T 41 52 BRCA TCGA-E2-A1IN HELQ SNP Missense_Mutation 4 84361040 T C 62 59 BRCA TCGA-E2-A1IN DAP SNP Missense_Mutation 5 10681199 C G 32 57 BRCA TCGA-E2-A1IN DNAH5 SNP Missense_Mutation 5 13769169 G A 42 100 BRCA TCGA-E2-A1IN UBE2D2 SNP Missense_Mutation 5 138980017 G A 45 89 BRCA TCGA-E2-A1IN PCDHA3 SNP Missense_Mutation 5 140180926 C G 31 50 BRCA TCGA-E2-A1IN CSNK1A1 SNP Silent 5 148885086 G C 35 65 BRCA TCGA-E2-A1IN SLU7 SNP Nonsense_Mutation 5 159842203 C T 30 85 BRCA TCGA-E2-A1IN ADCY2 SNP Silent 5 7709482 C T 19 49 BRCA TCGA-E2-A1IN AKD1 SNP Missense_Mutation 6 109814642 C G 32 81 BRCA TCGA-E2-A1IN NHSL1 SNP Missense_Mutation 6 138754770 G C 43 96 BRCA TCGA-E2-A1IN MSH5 SNP Missense_Mutation 6 31730243 C T 30 61 BRCA TCGA-E2-A1IN ZBTB22 SNP Silent 6 33283626 G A 45 49 BRCA TCGA-E2-A1IN USP49 SNP Missense_Mutation 6 41774547 C G 29 58 BRCA TCGA-E2-A1IN RIOK1 SNP Silent 6 7405582 C G 32 54 BRCA TCGA-E2-A1IN PIK3CG SNP Missense_Mutation 7 106509345 G A 46 55 BRCA TCGA-E2-A1IN FOXP2 SNP Missense_Mutation 7 114066652 C A 28 97 BRCA TCGA-E2-A1IN PLXNA4 SNP Missense_Mutation 7 132192988 C G 32 64 BRCA TCGA-E2-A1IN SDK1 SNP Silent 7 4213862 G A 43 58 BRCA TCGA-E2-A1IN ZMIZ2 SNP Missense_Mutation 7 44802875 G T 39 98 BRCA TCGA-E2-A1IN POM121C SNP Missense_Mutation 7 75070302 C G 32 70 BRCA TCGA-E2-A1IN TNFRSF11B SNP Missense_Mutation 8 119941001 C T 29 78 BRCA TCGA-E2-A1IN ZNF572 SNP Missense_Mutation 8 125988660 A T 2 52 BRCA TCGA-E2-A1IN TG SNP Missense_Mutation 8 133913623 G C 33 61 BRCA TCGA-E2-A1IN LY6K SNP Missense_Mutation 8 143784680 C T 29 38 BRCA TCGA-E2-A1IN GPT SNP Missense_Mutation 8 145730656 G A 37 54 BRCA TCGA-E2-A1IN PPP2R2A SNP Silent 8 26221289 C T 32 59 BRCA TCGA-E2-A1IN LETM2 SNP Nonsense_Mutation 8 38258464 C T 29 99 BRCA TCGA-E2-A1IN UBE2V2 SNP Missense_Mutation 8 48962528 C G 30 99 BRCA TCGA-E2-A1IN ST18 SNP Silent 8 53038649 A T 7 40 BRCA TCGA-E2-A1IN ZC2HC1A SNP Missense_Mutation 8 79629583 C G 32 69 BRCA TCGA-E2-A1IN PLEKHF2 SNP Missense_Mutation 8 96166542 C G 29 64 BRCA TCGA-E2-A1IN ZNF462 SNP Missense_Mutation 9 109773294 G A 33 86 BRCA TCGA-E2-A1IN SVEP1 SNP Missense_Mutation 9 113265399 C T 29 82 BRCA TCGA-E2-A1IN C9orf50 SNP Silent 9 132382053 G T 38 57 BRCA TCGA-E2-A1IN DDX31 SNP Splice_site 9 135513749 C T 29 44 BRCA TCGA-E2-A1IN C9orf96 SNP Missense_Mutation 9 136270506 C A 26 49 BRCA TCGA-E2-A1IN VAV2 SNP Silent 9 136661557 G C 33 56 BRCA TCGA-E2-A1IN IFNA17 SNP Missense_Mutation 9 21228028 G T 41 34 BRCA TCGA-E2-A1IN IFNA2 SNP Silent 9 21384861 C T 32 49 BRCA TCGA-E2-A1IN PGM5 SNP Missense_Mutation 9 71002421 G A 39 75 BRCA TCGA-E2-A1IN FAM108B1 SNP Silent 9 74489592 C A 30 52 BRCA TCGA-E2-A1IN FAM75D1 SNP Missense_Mutation 9 84605770 G A 40 49 BRCA TCGA-E2-A1IN SLC28A3 SNP Missense_Mutation 9 86900304 C G 32 52 BRCA TCGA-E2-A1IN S1PR3 SNP Silent 9 91616635 C T 32 62 BRCA TCGA-E2-A1IN ZNF169 SNP Missense_Mutation 9 97062379 G C 33 50 BRCA TCGA-E2-A1IO CFHR5 SNP Missense_Mutation 1 196973889 C T 23 50 BRCA TCGA-E2-A1IO IL22RA1 SNP Missense_Mutation 1 24465129 G A 40 56 BRCA TCGA-E2-A1IO SCGB1D4 SNP Silent 11 62065069 G A 40 37 BRCA TCGA-E2-A1IO INTS6 SNP Missense_Mutation 13 51950260 A T 12 59 BRCA TCGA-E2-A1IO RNF111 DEL In_Frame_Del 15 59350720 GCAATAGTACCACTG - 34 67 BRCA TCGA-E2-A1IO MYH1 SNP Missense_Mutation 17 10415212 G T 46 100 BRCA TCGA-E2-A1IO ZNF207 SNP Splice_Site 17 30690005 T C 57 89 BRCA TCGA-E2-A1IO TP53 INS Frame_Shift_Ins 17 7578278 - A 41 68 BRCA TCGA-E2-A1IO U2AF1 SNP Missense_Mutation 21 44514780 C T 19 99 BRCA TCGA-E2-A1IO PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-E2-A1IO PCDHB15 SNP Missense_Mutation 5 140626431 C A 30 97 BRCA TCGA-E2-A1IO FST INS Frame_Shift_Ins 5 52781027 - T 20 61 BRCA TCGA-E2-A1IO FAM135B SNP Missense_Mutation 8 139164616 C T 31 62 BRCA TCGA-E2-A1IO FAM75A6 SNP Missense_Mutation 9 43627675 C A 18 44 BRCA TCGA-E2-A1IU MST1P9 INS Frame_Shift_Ins 1 17087543 - A 59 48 BRCA TCGA-E2-A1IU REN SNP Missense_Mutation 1 204129737 C T 27 51 BRCA TCGA-E2-A1IU PIK3C2B SNP Missense_Mutation 1 204425132 G T 34 82 BRCA TCGA-E2-A1IU PTCHD3 SNP Missense_Mutation 10 27687621 C T 31 51 BRCA TCGA-E2-A1IU NAMPTL SNP Missense_Mutation 10 36811974 C A 30 63 BRCA TCGA-E2-A1IU OR8U1 SNP Silent 11 56143720 C T 29 52 BRCA TCGA-E2-A1IU EIF2B1 SNP Missense_Mutation 12 124110991 C G 18 62 BRCA TCGA-E2-A1IU OR11H12 SNP Missense_Mutation 14 19378395 A G 15 52 BRCA TCGA-E2-A1IU ASXL3 SNP Missense_Mutation 18 31326555 G A 37 99 BRCA TCGA-E2-A1IU ZNF532 SNP Missense_Mutation 18 56586060 G C 35 89 BRCA TCGA-E2-A1IU PRKACA SNP Missense_Mutation 19 14208444 A T 5 85 BRCA TCGA-E2-A1IU DOCK10 SNP Missense_Mutation 2 225662592 G T 38 99 BRCA TCGA-E2-A1IU C20orf72 SNP Silent 20 17950658 C T 20 50 BRCA TCGA-E2-A1IU TMPRSS2 SNP Splice_site 21 42838079 G T 46 62 BRCA TCGA-E2-A1IU ZBED1 SNP Silent 23 2407843 C T 31 43 BRCA TCGA-E2-A1IU C5orf56 SNP Nonsense_Mutation 5 131796262 C T 29 52 BRCA TCGA-E2-A1IU FAM71B SNP Silent 5 156589497 C T 32 60 BRCA TCGA-E2-A1IU PIK3R1 INS In_Frame_Ins 5 67591136 - GAGACC 11 69 BRCA TCGA-E2-A1IU GMDS SNP Silent 6 1930370 T C 60 51 BRCA TCGA-E2-A1IU HIST1H2AK SNP Missense_Mutation 6 27805735 T C 56 88 BRCA TCGA-E2-A1IU EPPK1 SNP Missense_Mutation 8 144945188 C G 23 52 BRCA TCGA-E2-A1IU CHD7 SNP Missense_Mutation 8 61766023 G T 41 80 BRCA TCGA-E2-A1IU ZNF462 SNP Silent 9 109687060 G A 37 70 BRCA TCGA-E2-A1IU TYRP1 SNP Nonsense_Mutation 9 12698600 G A 42 99 BRCA TCGA-E2-A1L6 DCAF6 SNP Missense_Mutation 1 168032951 C T 23 84 BRCA TCGA-E2-A1L6 SELL SNP Missense_Mutation 1 169677935 G T 46 47 BRCA TCGA-E2-A1L6 SRGAP2 SNP Missense_Mutation 1 206574931 G A 38 87 BRCA TCGA-E2-A1L6 ANKRD30A SNP Splice_Site 10 37490161 A G 7 58 BRCA TCGA-E2-A1L6 TMEM26 SNP Missense_Mutation 10 63191081 T C 49 49 BRCA TCGA-E2-A1L6 AP3M1 SNP Missense_Mutation 10 75885944 G C 44 63 BRCA TCGA-E2-A1L6 GCN1L1 SNP Missense_Mutation 12 120593147 C A 26 52 BRCA TCGA-E2-A1L6 BAZ2A SNP Missense_Mutation 12 56997461 C T 31 85 BRCA TCGA-E2-A1L6 TPPP2 SNP Missense_Mutation 14 21500170 G A 45 50 BRCA TCGA-E2-A1L6 ARID3B SNP Missense_Mutation 15 74836605 G A 44 57 BRCA TCGA-E2-A1L6 COASY DEL In_Frame_Del 17 40715065 GCT - 34 71 BRCA TCGA-E2-A1L6 NEDD4L SNP Silent 18 56018246 C T 20 59 BRCA TCGA-E2-A1L6 SERPINB8 SNP Missense_Mutation 18 61650836 G A 46 47 BRCA TCGA-E2-A1L6 IL27RA SNP Missense_Mutation 19 14150592 C G 24 61 BRCA TCGA-E2-A1L6 ABCD1 SNP Silent 23 153005554 A G 3 44 BRCA TCGA-E2-A1L6 GK5 SNP Silent 3 141934463 G A 39 50 BRCA TCGA-E2-A1L6 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A1L6 ATRIP SNP Silent 3 48501938 A G 16 40 BRCA TCGA-E2-A1L6 ARSK SNP Missense_Mutation 5 94927224 G A 37 98 BRCA TCGA-E2-A1L6 KCNK16 SNP Missense_Mutation 6 39283076 G A 42 49 BRCA TCGA-E2-A1L6 PKD1L1 SNP Nonsense_Mutation 7 47969011 G A 37 49 BRCA TCGA-E2-A1L6 RP1L1 DEL In_Frame_Del 8 10469694 CTG - 32 45 BRCA TCGA-E2-A1L7 RXRG SNP Missense_Mutation 1 165398021 C G 22 78 BRCA TCGA-E2-A1L7 SCYL3 SNP Silent 1 169857904 A C 1 42 BRCA TCGA-E2-A1L7 SPOCD1 SNP Missense_Mutation 1 32279574 C A 28 69 BRCA TCGA-E2-A1L7 C1orf173 SNP Missense_Mutation 1 75038741 C G 20 74 BRCA TCGA-E2-A1L7 CLCA4 SNP Missense_Mutation 1 87045132 G T 48 55 BRCA TCGA-E2-A1L7 HSPA14 SNP Missense_Mutation 10 14909121 C G 17 96 BRCA TCGA-E2-A1L7 TRMT112 SNP Missense_Mutation 11 64084394 A C 8 64 BRCA TCGA-E2-A1L7 PRB2 SNP Missense_Mutation 12 11546260 T G 60 52 BRCA TCGA-E2-A1L7 DDX47 SNP Silent 12 12974614 A C 5 43 BRCA TCGA-E2-A1L7 EMP1 SNP Missense_Mutation 12 13366467 A G 14 50 BRCA TCGA-E2-A1L7 OVCH1 SNP Missense_Mutation 12 29629199 G A 41 50 BRCA TCGA-E2-A1L7 KCNA1 SNP Missense_Mutation 12 5021319 A G 8 77 BRCA TCGA-E2-A1L7 ACVR1B SNP Silent 12 52387771 A T 6 25 BRCA TCGA-E2-A1L7 KRT75 SNP Silent 12 52825420 G A 40 39 BRCA TCGA-E2-A1L7 CSAD DEL Frame_Shift_Del 12 53565185 GCGG - 34 52 BRCA TCGA-E2-A1L7 HOXC10 SNP Silent 12 54379358 C G 29 76 BRCA TCGA-E2-A1L7 PIP4K2C DEL In_Frame_Del 12 57994636 GGCATCCACGACATCATTCGG - 35 92 BRCA TCGA-E2-A1L7 PTPRB SNP Missense_Mutation 12 71002944 G C 48 77 BRCA TCGA-E2-A1L7 ZAR1L SNP Missense_Mutation 13 32885924 G C 42 54 BRCA TCGA-E2-A1L7 GPC5 SNP Missense_Mutation 13 92346012 G C 47 60 BRCA TCGA-E2-A1L7 C14orf102 SNP Missense_Mutation 14 90782992 C T 32 61 BRCA TCGA-E2-A1L7 WHAMM SNP Missense_Mutation 15 83502073 A G 4 55 BRCA TCGA-E2-A1L7 AKAP13 SNP Missense_Mutation 15 86284649 C T 28 63 BRCA TCGA-E2-A1L7 RRN3 SNP Missense_Mutation 16 15165061 G T 44 56 BRCA TCGA-E2-A1L7 MYH11 SNP Splice_Site 16 15878554 C T 19 88 BRCA TCGA-E2-A1L7 ABCC6 SNP Silent 16 16284084 G A 35 56 BRCA TCGA-E2-A1L7 E4F1 SNP Missense_Mutation 16 2284337 C T 29 96 BRCA TCGA-E2-A1L7 HYDIN SNP Missense_Mutation 16 70926361 C A 18 90 BRCA TCGA-E2-A1L7 NCOR1 DEL Frame_Shift_Del 17 15973571 CCAGGGCTCAGTTGTGCTTTGGG - 22 83 BRCA TCGA-E2-A1L7 SLC4A1 SNP Missense_Mutation 17 42335404 A G 9 88 BRCA TCGA-E2-A1L7 TP53 SNP Missense_Mutation 17 7577518 T A 51 55 BRCA TCGA-E2-A1L7 MUM1 SNP Silent 19 1370741 G A 47 47 BRCA TCGA-E2-A1L7 AKAP8 SNP Missense_Mutation 19 15469801 T G 62 79 BRCA TCGA-E2-A1L7 ZNF461 SNP Missense_Mutation 19 37129736 T G 56 84 BRCA TCGA-E2-A1L7 RYR1 SNP Missense_Mutation 19 38939431 G A 39 95 BRCA TCGA-E2-A1L7 CYP2B6 SNP Missense_Mutation 19 41515230 A T 3 72 BRCA TCGA-E2-A1L7 RPL13A SNP Missense_Mutation 19 49993772 C A 18 73 BRCA TCGA-E2-A1L7 LILRA6 SNP Missense_Mutation 19 54743824 T G 59 50 BRCA TCGA-E2-A1L7 ZNF671 SNP Missense_Mutation 19 58232994 C T 18 52 BRCA TCGA-E2-A1L7 TANC1 SNP Missense_Mutation 2 160019974 C T 25 61 BRCA TCGA-E2-A1L7 MYT1L SNP Splice_site 2 1805469 T A 55 91 BRCA TCGA-E2-A1L7 NCKAP1 SNP Missense_Mutation 2 183800077 T C 58 92 BRCA TCGA-E2-A1L7 MFSD6 SNP Silent 2 191362340 A C 11 49 BRCA TCGA-E2-A1L7 DIDO1 SNP Missense_Mutation 20 61542888 G A 48 99 BRCA TCGA-E2-A1L7 TLR7 SNP Missense_Mutation 23 12903898 C A 32 67 BRCA TCGA-E2-A1L7 TFDP3 DNP Missense_Mutation 23 132351078 CC AA 30 56 BRCA TCGA-E2-A1L7 MORC1 SNP Missense_Mutation 3 108723692 G T 47 51 BRCA TCGA-E2-A1L7 DNAJB8 SNP Missense_Mutation 3 128181838 T A 59 49 BRCA TCGA-E2-A1L7 ABCF3 SNP Missense_Mutation 3 183905745 G C 33 82 BRCA TCGA-E2-A1L7 CRYBG3 SNP Missense_Mutation 3 97599998 A G 12 45 BRCA TCGA-E2-A1L7 BRPF1 SNP Missense_Mutation 3 9781344 A G 8 94 BRCA TCGA-E2-A1L7 LPHN3 SNP Missense_Mutation 4 62542579 G T 44 99 BRCA TCGA-E2-A1L7 MFSD7 SNP Silent 4 678308 G A 41 50 BRCA TCGA-E2-A1L7 C4orf26 SNP Missense_Mutation 4 76489622 G A 33 53 BRCA TCGA-E2-A1L7 PCDHB7 SNP Missense_Mutation 5 140553041 A G 7 58 BRCA TCGA-E2-A1L7 PCDHB7 SNP Missense_Mutation 5 140554394 G A 40 53 BRCA TCGA-E2-A1L7 SGK1 SNP Missense_Mutation 6 134494418 C G 32 74 BRCA TCGA-E2-A1L7 AHI1 SNP Nonsense_Mutation 6 135787286 G A 48 55 BRCA TCGA-E2-A1L7 RSPH10B SNP Missense_Mutation 7 6005323 C T 19 49 BRCA TCGA-E2-A1L7 ANXA13 SNP Missense_Mutation 8 124724944 T G 56 50 BRCA TCGA-E2-A1L7 PAPPA SNP Missense_Mutation 9 118997528 T C 53 62 BRCA TCGA-E2-A1L7 RUSC2 SNP Missense_Mutation 9 35558483 G T 42 100 BRCA TCGA-E2-A1L7 SEMA4D SNP Missense_Mutation 9 91978680 C T 18 71 BRCA TCGA-E2-A1L8 NUP210L SNP Missense_Mutation 1 153974380 T C 49 72 BRCA TCGA-E2-A1L8 LMNA SNP Missense_Mutation 1 156104249 G A 39 96 BRCA TCGA-E2-A1L8 ARHGEF10L SNP Missense_Mutation 1 17949512 G A 41 91 BRCA TCGA-E2-A1L8 LAMC1 SNP Missense_Mutation 1 183093773 A C 12 45 BRCA TCGA-E2-A1L8 EIF2D SNP Missense_Mutation 1 206769083 C G 32 67 BRCA TCGA-E2-A1L8 LAMB3 SNP Missense_Mutation 1 209803184 C T 29 97 BRCA TCGA-E2-A1L8 CLEC12A SNP Missense_Mutation 12 10134707 A C 4 49 BRCA TCGA-E2-A1L8 GNS SNP Silent 12 65133264 G A 33 52 BRCA TCGA-E2-A1L8 SPACA7 SNP Splice_site 13 113052452 C T 19 45 BRCA TCGA-E2-A1L8 CDH1 SNP Splice_Site 16 68844245 G A 44 91 BRCA TCGA-E2-A1L8 DNAH9 SNP Missense_Mutation 17 11650986 G A 45 83 BRCA TCGA-E2-A1L8 ATAD5 SNP Missense_Mutation 17 29214375 C G 18 60 BRCA TCGA-E2-A1L8 BZRAP1 SNP Missense_Mutation 17 56382935 T C 60 74 BRCA TCGA-E2-A1L8 TYK2 INS Frame_Shift_Ins 19 10475700 - C 62 52 BRCA TCGA-E2-A1L8 GCC2 SNP Missense_Mutation 2 109092242 G T 37 48 BRCA TCGA-E2-A1L8 ADAM23 SNP Silent 2 207406802 A G 9 44 BRCA TCGA-E2-A1L8 SP100 DEL Frame_Shift_Del 2 231334505 AAAG - 1 53 BRCA TCGA-E2-A1L8 ANKRD36C SNP Silent 2 96521224 C T 28 68 BRCA TCGA-E2-A1L8 RBL1 SNP Missense_Mutation 20 35661256 T G 50 79 BRCA TCGA-E2-A1L8 ARHGAP6 SNP Missense_Mutation 23 11162258 G A 41 93 BRCA TCGA-E2-A1L8 AKAP4 SNP Silent 23 49958245 C T 26 50 BRCA TCGA-E2-A1L8 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E2-A1L8 ENPEP SNP Missense_Mutation 4 111397859 G A 40 45 BRCA TCGA-E2-A1L8 C5orf42 SNP Missense_Mutation 5 37169187 A T 12 49 BRCA TCGA-E2-A1L8 GRIK2 SNP Silent 6 102376327 A C 15 70 BRCA TCGA-E2-A1L8 MEA1 SNP Silent 6 42981072 A G 14 48 BRCA TCGA-E2-A1L8 MGAM SNP Splice_site 7 141794453 A T 16 76 BRCA TCGA-E2-A1L8 EIF4H SNP Silent 7 73609623 A G 1 37 BRCA TCGA-E2-A1L8 DTX2 SNP Missense_Mutation 7 76111950 C G 32 67 BRCA TCGA-E2-A1L8 CNTRL SNP Missense_Mutation 9 123917201 C G 32 51 BRCA TCGA-E2-A1L8 OR1B1 SNP Missense_Mutation 9 125391118 G A 40 58 BRCA TCGA-E2-A1L8 SMARCA2 SNP Missense_Mutation 9 2054717 G T 34 47 BRCA TCGA-E2-A1L8 C9orf89 SNP Missense_Mutation 9 95869982 C G 25 70 BRCA TCGA-E2-A1L9 CD1C SNP Missense_Mutation 1 158261046 T C 50 47 BRCA TCGA-E2-A1L9 STX6 SNP Silent 1 180974506 G A 37 64 BRCA TCGA-E2-A1L9 TTC40 INS Frame_Shift_Ins 10 134659572 - G 27 46 BRCA TCGA-E2-A1L9 GATA3 DEL Frame_Shift_Del 10 8115705 AA - 13 90 BRCA TCGA-E2-A1L9 SYT9 SNP Missense_Mutation 11 7439351 C A 20 52 BRCA TCGA-E2-A1L9 E2F7 SNP Silent 12 77439990 C T 29 52 BRCA TCGA-E2-A1L9 ABHD13 SNP Missense_Mutation 13 108882272 C T 27 65 BRCA TCGA-E2-A1L9 AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-E2-A1L9 C14orf38 SNP Missense_Mutation 14 60011911 G T 34 51 BRCA TCGA-E2-A1L9 CBFB SNP Splice_site 16 67070543 C G 28 92 BRCA TCGA-E2-A1L9 CTCF DEL Frame_Shift_Del 16 67644817 CGCCGGGAAGGGGG - 19 71 BRCA TCGA-E2-A1L9 BRCA1 SNP Missense_Mutation 17 41244468 C A 28 67 BRCA TCGA-E2-A1L9 CBX2 SNP Missense_Mutation 17 77755934 G A 34 53 BRCA TCGA-E2-A1L9 COL5A3 SNP Silent 19 10084883 C T 23 40 BRCA TCGA-E2-A1L9 SLC1A6 SNP Missense_Mutation 19 15079170 G A 39 55 BRCA TCGA-E2-A1L9 SLC40A1 SNP Missense_Mutation 2 190428522 G T 43 89 BRCA TCGA-E2-A1L9 ASXL2 SNP Missense_Mutation 2 25982469 G A 39 98 BRCA TCGA-E2-A1L9 CXorf36 SNP Missense_Mutation 23 45011033 C T 17 83 BRCA TCGA-E2-A1L9 ELP6 SNP Missense_Mutation 3 47545880 T C 56 59 BRCA TCGA-E2-A1L9 SEMA3G SNP Silent 3 52469820 G A 37 23 BRCA TCGA-E2-A1L9 DSPP SNP Missense_Mutation 4 88534248 T A 49 59 BRCA TCGA-E2-A1L9 SYNCRIP SNP Silent 6 86332254 T C 62 58 BRCA TCGA-E2-A1L9 GRM8 SNP Silent 7 126173165 G T 41 60 BRCA TCGA-E2-A1L9 MLL3 INS Frame_Shift_Ins 7 151932951 - GG 31 96 BRCA TCGA-E2-A1L9 MLL3 SNP Nonsense_Mutation 7 152012230 G A 48 91 BRCA TCGA-E2-A1L9 SLC25A13 SNP Missense_Mutation 7 95761189 G A 42 98 BRCA TCGA-E2-A1L9 IFNA21 SNP Missense_Mutation 9 21166507 C A 30 48 BRCA TCGA-E2-A1LA OR10K1 SNP Missense_Mutation 1 158435767 G T 43 60 BRCA TCGA-E2-A1LA ARID1A SNP Silent 1 27087442 G A 34 65 BRCA TCGA-E2-A1LA ZCCHC11 SNP Silent 1 52901105 G C 45 86 BRCA TCGA-E2-A1LA BMI1 SNP Silent 10 22618336 T G 54 56 BRCA TCGA-E2-A1LA UBE4A SNP Missense_Mutation 11 118257271 G C 40 100 BRCA TCGA-E2-A1LA C2CD2L SNP Missense_Mutation 11 118984672 A T 6 87 BRCA TCGA-E2-A1LA MUC5B SNP Silent 11 1268478 G A 42 38 BRCA TCGA-E2-A1LA C11orf40 SNP Missense_Mutation 11 4594648 C G 30 45 BRCA TCGA-E2-A1LA PHRF1 SNP Silent 11 611058 C T 17 65 BRCA TCGA-E2-A1LA SNX15 SNP Missense_Mutation 11 64803030 G C 41 86 BRCA TCGA-E2-A1LA SNX32 SNP Missense_Mutation 11 65620794 G C 35 50 BRCA TCGA-E2-A1LA NUMA1 SNP Silent 11 71726410 G T 45 53 BRCA TCGA-E2-A1LA ANO4 DNP Missense_Mutation 12 101436158 TG CA 55 94 BRCA TCGA-E2-A1LA MFAP5 SNP Missense_Mutation 12 8803117 G A 45 63 BRCA TCGA-E2-A1LA IFT88 SNP Missense_Mutation 13 21217606 G A 47 87 BRCA TCGA-E2-A1LA OLFM4 SNP Silent 13 53624150 G T 47 50 BRCA TCGA-E2-A1LA DEGS2 SNP Silent 14 100615659 G C 43 51 BRCA TCGA-E2-A1LA PLEKHH1 SNP Missense_Mutation 14 68042170 A C 16 60 BRCA TCGA-E2-A1LA OCA2 SNP Missense_Mutation 15 28273032 C T 19 40 BRCA TCGA-E2-A1LA SPINT1 SNP Missense_Mutation 15 41145408 G T 33 65 BRCA TCGA-E2-A1LA RPAP1 SNP Silent 15 41820178 G A 42 52 BRCA TCGA-E2-A1LA WDR72 SNP Missense_Mutation 15 54015063 T A 60 79 BRCA TCGA-E2-A1LA PARP16 SNP Missense_Mutation 15 65553280 T C 52 87 BRCA TCGA-E2-A1LA EXOC3L1 SNP Missense_Mutation 16 67222677 G A 42 50 BRCA TCGA-E2-A1LA ST3GAL2 SNP Silent 16 70428926 A G 7 47 BRCA TCGA-E2-A1LA MYBBP1A SNP Silent 17 4448560 A C 6 43 BRCA TCGA-E2-A1LA KIF2B SNP Missense_Mutation 17 51902147 C G 18 54 BRCA TCGA-E2-A1LA SCN4A SNP Missense_Mutation 17 62034778 A G 7 85 BRCA TCGA-E2-A1LA C17orf80 SNP Silent 17 71232434 A G 7 52 BRCA TCGA-E2-A1LA LOXHD1 SNP Missense_Mutation 18 44140364 G A 39 58 BRCA TCGA-E2-A1LA TMX3 SNP Missense_Mutation 18 66354909 T A 58 82 BRCA TCGA-E2-A1LA JSRP1 SNP Silent 19 2254465 G A 39 32 BRCA TCGA-E2-A1LA TGFB1 SNP Missense_Mutation 19 41838160 C G 23 82 BRCA TCGA-E2-A1LA PLIN3 SNP Missense_Mutation 19 4852082 C G 22 65 BRCA TCGA-E2-A1LA ZNF835 SNP Missense_Mutation 19 57176314 C T 27 48 BRCA TCGA-E2-A1LA IL1RL1 SNP Splice_site 2 102964405 T A 60 51 BRCA TCGA-E2-A1LA RAB3GAP1 SNP Silent 2 135851198 A G 4 46 BRCA TCGA-E2-A1LA HAAO SNP Missense_Mutation 2 43010980 C G 18 52 BRCA TCGA-E2-A1LA DEFB127 SNP Missense_Mutation 20 139457 G A 41 68 BRCA TCGA-E2-A1LA CRNKL1 SNP Missense_Mutation 20 20033061 C G 18 51 BRCA TCGA-E2-A1LA EYA2 SNP Missense_Mutation 20 45702958 T C 60 54 BRCA TCGA-E2-A1LA ZNF831 SNP Silent 20 57768111 T A 55 43 BRCA TCGA-E2-A1LA CECR2 DEL Frame_Shift_Del 22 17983949 CG - 23 24 BRCA TCGA-E2-A1LA SFI1 SNP Splice_site 22 31998278 T C 51 72 BRCA TCGA-E2-A1LA WBP2NL SNP Missense_Mutation 22 42422812 C G 24 61 BRCA TCGA-E2-A1LA THOC2 DEL Frame_Shift_Del 23 122755245 CTTTGTCAGA - 32 99 BRCA TCGA-E2-A1LA ASMT SNP Silent 23 1743208 C G 29 50 BRCA TCGA-E2-A1LA GNL3L SNP Missense_Mutation 23 54578044 G A 41 90 BRCA TCGA-E2-A1LA POF1B SNP Silent 23 84563184 C A 17 49 BRCA TCGA-E2-A1LA IFT57 SNP Missense_Mutation 3 107925495 T C 64 60 BRCA TCGA-E2-A1LA ZBED2 SNP Missense_Mutation 3 111312772 C A 19 61 BRCA TCGA-E2-A1LA COL6A5 SNP Silent 3 130110116 T G 53 40 BRCA TCGA-E2-A1LA NBEAL2 SNP Missense_Mutation 3 47037780 T C 50 67 BRCA TCGA-E2-A1LA USP19 SNP Silent 3 49152539 C T 31 42 BRCA TCGA-E2-A1LA DNAH1 SNP Silent 3 52423503 C T 17 49 BRCA TCGA-E2-A1LA CADPS SNP Nonsense_Mutation 3 62503858 G A 39 100 BRCA TCGA-E2-A1LA NPNT SNP Silent 4 106890054 C G 31 65 BRCA TCGA-E2-A1LA PCDH18 SNP Missense_Mutation 4 138452231 A C 5 94 BRCA TCGA-E2-A1LA C4orf51 SNP Silent 4 146601496 A G 8 41 BRCA TCGA-E2-A1LA FAM200B SNP Missense_Mutation 4 15690255 T A 53 63 BRCA TCGA-E2-A1LA YTHDC1 SNP Missense_Mutation 4 69179981 G A 39 83 BRCA TCGA-E2-A1LA SLC2A9 SNP Missense_Mutation 4 9922065 G C 46 96 BRCA TCGA-E2-A1LA DDX41 SNP Missense_Mutation 5 176942194 G C 43 100 BRCA TCGA-E2-A1LA PRKAA1 SNP Silent 5 40771909 A G 4 49 BRCA TCGA-E2-A1LA TMEM171 SNP Missense_Mutation 5 72419255 A T 7 66 BRCA TCGA-E2-A1LA NMBR SNP Missense_Mutation 6 142409522 G C 34 80 BRCA TCGA-E2-A1LA HIVEP2 SNP Missense_Mutation 6 143091059 C A 26 71 BRCA TCGA-E2-A1LA MLLT4 SNP Missense_Mutation 6 168312024 A C 3 89 BRCA TCGA-E2-A1LA RELN SNP Missense_Mutation 7 103131244 C T 25 97 BRCA TCGA-E2-A1LA ASB10 SNP Missense_Mutation 7 150883937 C T 31 61 BRCA TCGA-E2-A1LA PTPRN2 SNP Missense_Mutation 7 157364169 A G 15 87 BRCA TCGA-E2-A1LA SFRP4 SNP Missense_Mutation 7 37947171 C G 24 52 BRCA TCGA-E2-A1LA TMEM74 SNP Missense_Mutation 8 109797275 G A 42 50 BRCA TCGA-E2-A1LA KRT8P11 SNP Missense_Mutation 9 102067616 G C 47 56 BRCA TCGA-E2-A1LA MUSK SNP Missense_Mutation 9 113547204 C G 32 52 BRCA TCGA-E2-A1LA DNM1 SNP Missense_Mutation 9 131004517 C T 23 77 BRCA TCGA-E2-A1LB HRNR SNP Missense_Mutation 1 152188769 C T 28 46 BRCA TCGA-E2-A1LB IFI16 SNP Missense_Mutation 1 158985687 G C 33 43 BRCA TCGA-E2-A1LB EIF2C4 SNP Missense_Mutation 1 36297703 G A 33 100 BRCA TCGA-E2-A1LB MGEA5 SNP Missense_Mutation 10 103563692 T A 50 94 BRCA TCGA-E2-A1LB CCDC172 SNP Missense_Mutation 10 118100287 G C 45 60 BRCA TCGA-E2-A1LB KNDC1 SNP Missense_Mutation 10 135025332 G C 33 63 BRCA TCGA-E2-A1LB MUC6 SNP Missense_Mutation 11 1016406 G A 33 54 BRCA TCGA-E2-A1LB DDI1 SNP Silent 11 103907556 G A 45 63 BRCA TCGA-E2-A1LB FERMT3 SNP Silent 11 63974872 C T 31 45 BRCA TCGA-E2-A1LB FBXW8 SNP Missense_Mutation 12 117387426 C T 31 90 BRCA TCGA-E2-A1LB KRT79 SNP Missense_Mutation 12 53227620 T C 54 88 BRCA TCGA-E2-A1LB A2ML1 SNP Nonsense_Mutation 12 8998092 A T 9 60 BRCA TCGA-E2-A1LB TMCO3 SNP Missense_Mutation 13 114154394 A T 7 78 BRCA TCGA-E2-A1LB TP53BP1 SNP Missense_Mutation 15 43701236 T C 57 89 BRCA TCGA-E2-A1LB MYO1E SNP Missense_Mutation 15 59523941 C A 22 100 BRCA TCGA-E2-A1LB CRISPLD2 SNP Missense_Mutation 16 84888433 G A 37 59 BRCA TCGA-E2-A1LB KRTAP1-3 SNP Missense_Mutation 17 39191003 C G 25 69 BRCA TCGA-E2-A1LB ACE SNP Missense_Mutation 17 61557814 G A 40 95 BRCA TCGA-E2-A1LB RNF213 SNP Missense_Mutation 17 78318644 A G 16 92 BRCA TCGA-E2-A1LB NACC1 SNP Silent 19 13247176 C G 32 58 BRCA TCGA-E2-A1LB ZNF816 SNP Missense_Mutation 19 53453802 C A 32 45 BRCA TCGA-E2-A1LB MUC16 SNP Silent 19 9076601 T G 63 49 BRCA TCGA-E2-A1LB LRP1B SNP Silent 2 141806595 C T 32 59 BRCA TCGA-E2-A1LB BZW1 SNP Silent 2 201682951 C T 32 50 BRCA TCGA-E2-A1LB ADD2 SNP Missense_Mutation 2 70905967 C T 27 52 BRCA TCGA-E2-A1LB PLA2G6 SNP Silent 22 38509509 C T 32 52 BRCA TCGA-E2-A1LB VSIG1 SNP Missense_Mutation 23 107316026 G C 45 57 BRCA TCGA-E2-A1LB ZNF630 SNP Splice_Site 23 47926259 C T 18 50 BRCA TCGA-E2-A1LB SMC4 DEL In_Frame_Del 3 160148495 AGC - 3 51 BRCA TCGA-E2-A1LB SMC4 DEL Frame_Shift_Del 3 160148940 AT - 4 50 BRCA TCGA-E2-A1LB SCN5A SNP Nonsense_Mutation 3 38647465 C A 30 86 BRCA TCGA-E2-A1LB EMCN SNP Nonsense_Mutation 4 101396227 G C 45 58 BRCA TCGA-E2-A1LB IBSP SNP Missense_Mutation 4 88723821 C T 26 76 BRCA TCGA-E2-A1LB CHSY3 SNP Nonsense_Mutation 5 129520402 C T 29 99 BRCA TCGA-E2-A1LB NR3C1 SNP Missense_Mutation 5 142680112 G A 40 99 BRCA TCGA-E2-A1LB LYSMD3 SNP Nonsense_Mutation 5 89814775 G C 45 71 BRCA TCGA-E2-A1LB SYNE1 SNP Missense_Mutation 6 152631933 C T 19 68 BRCA TCGA-E2-A1LB PNRC1 SNP Missense_Mutation 6 89793494 A C 1 68 BRCA TCGA-E2-A1LB ABL1 SNP Missense_Mutation 9 133729582 G A 45 99 BRCA TCGA-E2-A1LB CAMSAP1 SNP Silent 9 138714464 C A 26 50 BRCA TCGA-E2-A1LG VAV3 SNP Missense_Mutation 1 108299921 C G 29 99 BRCA TCGA-E2-A1LG FLG SNP Missense_Mutation 1 152276492 C T 32 50 BRCA TCGA-E2-A1LG NPR1 SNP Silent 1 153661754 C T 29 67 BRCA TCGA-E2-A1LG ATP13A2 SNP Silent 1 17312979 G A 37 49 BRCA TCGA-E2-A1LG SEC16B SNP Missense_Mutation 1 177899016 G A 37 75 BRCA TCGA-E2-A1LG ABL2 SNP Missense_Mutation 1 179086512 C G 32 97 BRCA TCGA-E2-A1LG LAMC2 SNP Missense_Mutation 1 183187608 G C 41 79 BRCA TCGA-E2-A1LG SRGAP2 SNP Silent 1 206579816 C G 30 62 BRCA TCGA-E2-A1LG DNAH14 SNP Missense_Mutation 1 225334860 G C 45 56 BRCA TCGA-E2-A1LG EFCAB2 SNP Silent 1 245133604 C T 23 47 BRCA TCGA-E2-A1LG SH3BP5L SNP Missense_Mutation 1 249106488 C T 30 93 BRCA TCGA-E2-A1LG STMN1 SNP Silent 1 26212229 G C 33 51 BRCA TCGA-E2-A1LG PUM1 SNP Silent 1 31478856 G A 45 66 BRCA TCGA-E2-A1LG NDUFS5 SNP Missense_Mutation 1 39494490 C G 31 65 BRCA TCGA-E2-A1LG ZMYND12 SNP Missense_Mutation 1 42914274 C G 32 65 BRCA TCGA-E2-A1LG FAM178A SNP Missense_Mutation 10 102676827 G C 33 69 BRCA TCGA-E2-A1LG FBXO18 SNP Missense_Mutation 10 5948419 C G 30 82 BRCA TCGA-E2-A1LG SIRT1 SNP Missense_Mutation 10 69676149 G C 33 54 BRCA TCGA-E2-A1LG CEP164 SNP Missense_Mutation 11 117267896 C G 30 80 BRCA TCGA-E2-A1LG DSCAML1 SNP Silent 11 117651335 G A 40 53 BRCA TCGA-E2-A1LG CBL SNP Silent 11 119148506 G A 45 59 BRCA TCGA-E2-A1LG CBL SNP Missense_Mutation 11 119155748 G C 45 97 BRCA TCGA-E2-A1LG CBL SNP Missense_Mutation 11 119155954 G C 37 97 BRCA TCGA-E2-A1LG ZNF202 SNP Silent 11 123601456 C T 32 73 BRCA TCGA-E2-A1LG MUC5B SNP Missense_Mutation 11 1256618 C G 30 95 BRCA TCGA-E2-A1LG TNNI2 SNP Silent 11 1862416 C T 29 57 BRCA TCGA-E2-A1LG TRPM5 SNP Missense_Mutation 11 2432657 C T 30 72 BRCA TCGA-E2-A1LG PAMR1 SNP Missense_Mutation 11 35463039 G C 33 51 BRCA TCGA-E2-A1LG LRP4 SNP Missense_Mutation 11 46897025 C G 30 100 BRCA TCGA-E2-A1LG GLYATL2 SNP Missense_Mutation 11 58604868 C G 32 52 BRCA TCGA-E2-A1LG TUT1 SNP Missense_Mutation 11 62343377 G C 33 78 BRCA TCGA-E2-A1LG SYVN1 SNP Silent 11 64898960 G C 33 61 BRCA TCGA-E2-A1LG PCNXL3 SNP Missense_Mutation 11 65389721 G T 33 74 BRCA TCGA-E2-A1LG CCDC67 SNP Missense_Mutation 11 93148236 G C 33 78 BRCA TCGA-E2-A1LG CHPT1 SNP Missense_Mutation 12 102117560 C G 32 85 BRCA TCGA-E2-A1LG DENND5B SNP Missense_Mutation 12 31632879 C T 32 84 BRCA TCGA-E2-A1LG C12orf5 SNP Missense_Mutation 12 4446208 A C 5 79 BRCA TCGA-E2-A1LG LMBR1L SNP Missense_Mutation 12 49500499 G C 33 59 BRCA TCGA-E2-A1LG FAM186B SNP Missense_Mutation 12 49994319 G C 33 50 BRCA TCGA-E2-A1LG BLOC1S1 SNP Missense_Mutation 12 56112976 G A 41 68 BRCA TCGA-E2-A1LG TSPAN8 SNP Splice_Site 12 71523195 C T 32 78 BRCA TCGA-E2-A1LG KDELC1 SNP Missense_Mutation 13 103446142 C T 29 100 BRCA TCGA-E2-A1LG COL4A2 SNP Missense_Mutation 13 111117840 G T 41 85 BRCA TCGA-E2-A1LG ZMYM2 SNP Missense_Mutation 13 20579263 G C 45 75 BRCA TCGA-E2-A1LG XPO4 SNP Missense_Mutation 13 21436902 C T 31 97 BRCA TCGA-E2-A1LG EFHA1 SNP Splice_Site 13 22070300 C G 32 82 BRCA TCGA-E2-A1LG GTF3A SNP Missense_Mutation 13 28001286 C G 32 94 BRCA TCGA-E2-A1LG UGGT2 SNP Silent 13 96529964 C T 29 58 BRCA TCGA-E2-A1LG CTAGE5 SNP Nonsense_Mutation 14 39796100 C T 29 63 BRCA TCGA-E2-A1LG NIN SNP Missense_Mutation 14 51239789 G C 33 92 BRCA TCGA-E2-A1LG SOCS4 SNP Nonsense_Mutation 14 55510415 C G 29 63 BRCA TCGA-E2-A1LG FNTB SNP Splice_site 14 65482433 G C 33 92 BRCA TCGA-E2-A1LG UNC79 SNP Missense_Mutation 14 94088627 C T 23 80 BRCA TCGA-E2-A1LG LCMT2 SNP Missense_Mutation 15 43622033 C T 29 75 BRCA TCGA-E2-A1LG SORD SNP Missense_Mutation 15 45353269 T A 50 60 BRCA TCGA-E2-A1LG UNC13C SNP Splice_site 15 54435237 G T 35 84 BRCA TCGA-E2-A1LG ACAN SNP Missense_Mutation 15 89401865 G A 33 73 BRCA TCGA-E2-A1LG CNGB1 SNP Silent 16 57921825 G T 41 41 BRCA TCGA-E2-A1LG KCTD19 SNP Missense_Mutation 16 67338408 C T 29 81 BRCA TCGA-E2-A1LG DNAAF1 SNP Missense_Mutation 16 84199429 G A 45 94 BRCA TCGA-E2-A1LG PLD6 SNP Missense_Mutation 17 17106133 C T 32 39 BRCA TCGA-E2-A1LG CDK12 SNP Missense_Mutation 17 37667820 G C 37 100 BRCA TCGA-E2-A1LG STAT5B SNP Missense_Mutation 17 40370196 G C 33 100 BRCA TCGA-E2-A1LG C17orf53 SNP Silent 17 42232258 G A 33 65 BRCA TCGA-E2-A1LG RHBDF2 SNP Missense_Mutation 17 74473024 G A 37 72 BRCA TCGA-E2-A1LG TP53 DEL In_Frame_Del 17 7577515 TGA - 59 73 BRCA TCGA-E2-A1LG CANT1 SNP Silent 17 76989659 C A 29 48 BRCA TCGA-E2-A1LG COLEC12 SNP Silent 18 331727 G A 45 50 BRCA TCGA-E2-A1LG CILP2 SNP Nonsense_Mutation 19 19654870 C T 21 66 BRCA TCGA-E2-A1LG WTIP SNP Silent 19 34984225 G A 41 80 BRCA TCGA-E2-A1LG RYR1 SNP Silent 19 38948694 C T 30 58 BRCA TCGA-E2-A1LG FIZ1 SNP Missense_Mutation 19 56109162 G A 45 65 BRCA TCGA-E2-A1LG U2AF2 SNP Missense_Mutation 19 56171941 C T 21 90 BRCA TCGA-E2-A1LG MAP4K4 SNP Missense_Mutation 2 102448266 G A 45 100 BRCA TCGA-E2-A1LG EDAR SNP Nonsense_Mutation 2 109546677 G A 39 52 BRCA TCGA-E2-A1LG PMS1 SNP Missense_Mutation 2 190728571 G C 33 63 BRCA TCGA-E2-A1LG CCDC150 SNP Silent 2 197521749 C T 31 34 BRCA TCGA-E2-A1LG ZDBF2 SNP Nonsense_Mutation 2 207169562 G T 37 56 BRCA TCGA-E2-A1LG CRYGA SNP Missense_Mutation 2 209025769 C T 32 66 BRCA TCGA-E2-A1LG DTNB SNP Silent 2 25611078 G A 37 41 BRCA TCGA-E2-A1LG INPP4A SNP Missense_Mutation 2 99189336 G C 33 59 BRCA TCGA-E2-A1LG DEFB132 SNP Nonsense_Mutation 20 239786 G T 41 67 BRCA TCGA-E2-A1LG ERGIC3 SNP Silent 20 34130641 A G 2 51 BRCA TCGA-E2-A1LG LAMA5 SNP Silent 20 60905656 G A 45 57 BRCA TCGA-E2-A1LG KRTAP10-8 SNP Silent 21 46032257 C T 28 73 BRCA TCGA-E2-A1LG DGCR6 SNP Missense_Mutation 22 18893927 G A 39 61 BRCA TCGA-E2-A1LG MYH9 SNP Silent 22 36690231 C T 32 70 BRCA TCGA-E2-A1LG CHRDL1 SNP Splice_site 23 110035316 G A 40 59 BRCA TCGA-E2-A1LG OPHN1 SNP Silent 23 67431962 G C 45 56 BRCA TCGA-E2-A1LG KIF4A SNP Nonsense_Mutation 23 69606486 G T 45 86 BRCA TCGA-E2-A1LG CD200R1L SNP Silent 3 112538665 G A 33 54 BRCA TCGA-E2-A1LG B4GALT4 SNP Silent 3 118945872 G C 45 50 BRCA TCGA-E2-A1LG SOX14 SNP Silent 3 137484310 C T 25 54 BRCA TCGA-E2-A1LG USP13 SNP Nonsense_Mutation 3 179472637 C A 29 84 BRCA TCGA-E2-A1LG ZNF860 SNP Missense_Mutation 3 32032288 G A 37 53 BRCA TCGA-E2-A1LG SCN10A SNP Missense_Mutation 3 38805068 C G 32 76 BRCA TCGA-E2-A1LG ZNF167 SNP Missense_Mutation 3 44611611 G C 45 53 BRCA TCGA-E2-A1LG XCR1 SNP Missense_Mutation 3 46063195 C T 25 50 BRCA TCGA-E2-A1LG PBRM1 SNP Missense_Mutation 3 52584826 C T 29 70 BRCA TCGA-E2-A1LG OR5H6 SNP Missense_Mutation 3 97983636 C T 32 40 BRCA TCGA-E2-A1LG PCDH10 SNP Missense_Mutation 4 134072178 C T 26 56 BRCA TCGA-E2-A1LG ENPP6 SNP Silent 4 185038159 G A 45 52 BRCA TCGA-E2-A1LG BMP2K INS In_Frame_Ins 4 79792136 - CAG 2 44 BRCA TCGA-E2-A1LG FNIP1 SNP Missense_Mutation 5 130791627 T G 56 53 BRCA TCGA-E2-A1LG KIF3A SNP Missense_Mutation 5 132034940 C G 32 60 BRCA TCGA-E2-A1LG DNAH5 SNP Missense_Mutation 5 13762836 G C 33 68 BRCA TCGA-E2-A1LG TCOF1 SNP Missense_Mutation 5 149775971 C T 22 58 BRCA TCGA-E2-A1LG RPS14 SNP Silent 5 149825182 G A 37 46 BRCA TCGA-E2-A1LG SLC36A2 SNP Silent 5 150696504 G A 45 67 BRCA TCGA-E2-A1LG CDHR2 SNP Silent 5 176002162 C G 29 54 BRCA TCGA-E2-A1LG ERAP2 SNP Missense_Mutation 5 96215756 C G 29 56 BRCA TCGA-E2-A1LG THEMIS SNP Missense_Mutation 6 128221997 G C 33 66 BRCA TCGA-E2-A1LG TBP SNP Silent 6 170871091 G A 34 60 BRCA TCGA-E2-A1LG HIST1H2AJ SNP Nonsense_Mutation 6 27782245 C A 29 96 BRCA TCGA-E2-A1LG MCM3 SNP Silent 6 52146918 C T 32 79 BRCA TCGA-E2-A1LG BACH2 SNP Splice_site 6 90661581 C A 18 98 BRCA TCGA-E2-A1LG GSTK1 SNP Missense_Mutation 7 142962324 C T 23 49 BRCA TCGA-E2-A1LG ZNF425 SNP Missense_Mutation 7 148802280 C G 32 59 BRCA TCGA-E2-A1LG MLL3 DEL Frame_Shift_Del 7 151917645 TG - 55 56 BRCA TCGA-E2-A1LG MLL3 DEL In_Frame_Del 7 151917648 TTGGATGTCTGGAGGGGTCTGAAG - 52 50 BRCA TCGA-E2-A1LG MLL3 SNP Nonsense_Mutation 7 151921673 C T 21 98 BRCA TCGA-E2-A1LG TBX20 SNP Missense_Mutation 7 35284610 G T 33 100 BRCA TCGA-E2-A1LG ARPC1B SNP Missense_Mutation 7 98991734 G A 41 99 BRCA TCGA-E2-A1LG RGS22 SNP Missense_Mutation 8 101083735 C A 30 84 BRCA TCGA-E2-A1LG ABRA SNP Silent 8 107773358 G C 45 47 BRCA TCGA-E2-A1LG SPATC1 SNP Silent 8 145101812 C T 29 62 BRCA TCGA-E2-A1LG MYOM2 SNP Missense_Mutation 8 2088660 C T 29 99 BRCA TCGA-E2-A1LG NUGGC SNP Silent 8 27887897 G A 45 51 BRCA TCGA-E2-A1LG CYLC2 SNP Silent 9 105767684 G C 37 49 BRCA TCGA-E2-A1LG AKNA SNP Missense_Mutation 9 117108251 C G 29 58 BRCA TCGA-E2-A1LG FAM129B SNP Missense_Mutation 9 130286102 C T 25 47 BRCA TCGA-E2-A1LG LAMC3 SNP Missense_Mutation 9 133924412 G A 37 58 BRCA TCGA-E2-A1LG ADAMTSL1 SNP Silent 9 18639298 C G 29 60 BRCA TCGA-E2-A1LG PLIN2 SNP Missense_Mutation 9 19116288 C G 32 49 BRCA TCGA-E2-A1LG RGP1 SNP Missense_Mutation 9 35749738 G C 45 59 BRCA TCGA-E2-A1LG RGP1 SNP Silent 9 35751661 G A 41 51 BRCA TCGA-E2-A1LG ANXA1 SNP Missense_Mutation 9 75773624 C T 29 57 BRCA TCGA-E2-A1LG PTPRD SNP Silent 9 8518119 G A 41 50 BRCA TCGA-E2-A1LH AHCYL1 SNP Missense_Mutation 1 110559298 G T 41 63 BRCA TCGA-E2-A1LH CD84 SNP Nonsense_Mutation 1 160523827 G T 48 52 BRCA TCGA-E2-A1LH ITLN2 SNP Silent 1 160922453 A G 15 46 BRCA TCGA-E2-A1LH DUSP27 SNP Missense_Mutation 1 167095074 G C 44 100 BRCA TCGA-E2-A1LH LYST SNP Missense_Mutation 1 235907399 C G 32 61 BRCA TCGA-E2-A1LH RGS7 SNP Missense_Mutation 1 240969478 C T 19 78 BRCA TCGA-E2-A1LH OR2L8 SNP Missense_Mutation 1 248113016 C A 22 84 BRCA TCGA-E2-A1LH GPATCH3 SNP Missense_Mutation 1 27226625 G C 34 70 BRCA TCGA-E2-A1LH SZT2 SNP Missense_Mutation 1 43868911 C T 31 98 BRCA TCGA-E2-A1LH TAL1 SNP Missense_Mutation 1 47685653 G C 44 79 BRCA TCGA-E2-A1LH USP24 SNP Missense_Mutation 1 55555340 C T 20 83 BRCA TCGA-E2-A1LH GBP4 SNP Splice_Site 1 89656943 C T 19 60 BRCA TCGA-E2-A1LH LRRC18 SNP Missense_Mutation 10 50122049 T A 58 80 BRCA TCGA-E2-A1LH ITIH5 SNP Silent 10 7658059 A T 9 51 BRCA TCGA-E2-A1LH AVPI1 SNP Missense_Mutation 10 99437633 C G 32 81 BRCA TCGA-E2-A1LH DYNC2H1 SNP Missense_Mutation 11 103106473 C A 32 74 BRCA TCGA-E2-A1LH ALG9 SNP Splice_site 11 111680367 C G 24 91 BRCA TCGA-E2-A1LH C11orf63 SNP Missense_Mutation 11 122774895 G A 47 48 BRCA TCGA-E2-A1LH OR10G4 SNP Nonsense_Mutation 11 123886801 C T 21 51 BRCA TCGA-E2-A1LH EI24 SNP Missense_Mutation 11 125447449 T C 57 76 BRCA TCGA-E2-A1LH FOXRED1 SNP Missense_Mutation 11 126147394 C G 22 61 BRCA TCGA-E2-A1LH SLC5A12 SNP Missense_Mutation 11 26702758 C A 30 74 BRCA TCGA-E2-A1LH SLC22A10 SNP Missense_Mutation 11 63069806 C G 25 54 BRCA TCGA-E2-A1LH ZNF215 SNP Silent 11 6977210 T C 59 52 BRCA TCGA-E2-A1LH PAAF1 DEL Frame_Shift_Del 11 73627677 ATTT - 8 59 BRCA TCGA-E2-A1LH UCP2 SNP Missense_Mutation 11 73687912 T A 57 91 BRCA TCGA-E2-A1LH XRRA1 SNP Splice_Site 11 74574068 T C 55 71 BRCA TCGA-E2-A1LH CKAP4 SNP Missense_Mutation 12 106633464 C G 31 52 BRCA TCGA-E2-A1LH TRAFD1 SNP Splice_site 12 112587555 G T 41 82 BRCA TCGA-E2-A1LH ZCCHC8 SNP Missense_Mutation 12 122958130 C T 32 85 BRCA TCGA-E2-A1LH EP400NL SNP Missense_Mutation 12 132589046 G C 41 85 BRCA TCGA-E2-A1LH ARNTL2 SNP Splice_Site 12 27521193 A C 15 69 BRCA TCGA-E2-A1LH IFNG SNP Missense_Mutation 12 68549246 G A 40 64 BRCA TCGA-E2-A1LH ZDHHC17 SNP Missense_Mutation 12 77191265 C G 19 86 BRCA TCGA-E2-A1LH AMDHD1 DEL Frame_Shift_Del 12 96359545 TTGC - 52 55 BRCA TCGA-E2-A1LH IKBIP SNP Missense_Mutation 12 99007970 G A 40 50 BRCA TCGA-E2-A1LH CARS2 DEL In_Frame_Del 13 111293891 GCT - 38 51 BRCA TCGA-E2-A1LH SACS SNP Silent 13 23912087 G C 47 43 BRCA TCGA-E2-A1LH INTS6 SNP Missense_Mutation 13 51948545 C G 17 98 BRCA TCGA-E2-A1LH DYNC1H1 SNP Missense_Mutation 14 102496209 G T 33 62 BRCA TCGA-E2-A1LH SNX6 SNP Missense_Mutation 14 35032351 C A 26 89 BRCA TCGA-E2-A1LH TMEM63C SNP Missense_Mutation 14 77697973 C G 32 62 BRCA TCGA-E2-A1LH STARD9 DEL In_Frame_Del 15 42982040 TGACTC - 59 47 BRCA TCGA-E2-A1LH MAP1A DEL Frame_Shift_Del 15 43813754 CCTCAGGGGGCTT - 18 84 BRCA TCGA-E2-A1LH SLC12A1 SNP Missense_Mutation 15 48551430 G A 45 65 BRCA TCGA-E2-A1LH SLC27A2 SNP Missense_Mutation 15 50515175 G A 40 60 BRCA TCGA-E2-A1LH ZNF609 SNP Missense_Mutation 15 64970559 C G 30 84 BRCA TCGA-E2-A1LH HEXA SNP Missense_Mutation 15 72641433 C T 29 78 BRCA TCGA-E2-A1LH MYH11 SNP Silent 16 15797866 T C 62 57 BRCA TCGA-E2-A1LH CDH8 SNP Missense_Mutation 16 61689466 A T 10 88 BRCA TCGA-E2-A1LH TERF2 SNP Missense_Mutation 16 69401045 C G 32 61 BRCA TCGA-E2-A1LH NFAT5 SNP Missense_Mutation 16 69681063 C T 26 85 BRCA TCGA-E2-A1LH SF3B3 SNP Silent 16 70595601 G A 48 62 BRCA TCGA-E2-A1LH CPD SNP Missense_Mutation 17 28766018 G C 33 54 BRCA TCGA-E2-A1LH PLCD3 SNP Missense_Mutation 17 43195728 A T 11 74 BRCA TCGA-E2-A1LH EPX SNP Missense_Mutation 17 56276953 G C 41 48 BRCA TCGA-E2-A1LH TP53 SNP Missense_Mutation 17 7578535 T G 56 76 BRCA TCGA-E2-A1LH ALPK2 SNP Missense_Mutation 18 56247679 T G 60 58 BRCA TCGA-E2-A1LH TWSG1 SNP Missense_Mutation 18 9396385 G C 33 97 BRCA TCGA-E2-A1LH UNC13A SNP Silent 19 17785507 C T 23 22 BRCA TCGA-E2-A1LH CILP2 INS Frame_Shift_Ins 19 19655187 - G 18 59 BRCA TCGA-E2-A1LH ZNF43 SNP Missense_Mutation 19 21990455 A T 6 54 BRCA TCGA-E2-A1LH PSENEN SNP Missense_Mutation 19 36237374 G A 37 60 BRCA TCGA-E2-A1LH PRODH2 SNP Silent 19 36297349 A G 8 40 BRCA TCGA-E2-A1LH ZNF180 SNP Missense_Mutation 19 44982147 A G 2 54 BRCA TCGA-E2-A1LH KLK13 SNP Missense_Mutation 19 51561881 C T 29 55 BRCA TCGA-E2-A1LH ACER1 SNP Missense_Mutation 19 6333478 A T 15 70 BRCA TCGA-E2-A1LH MBD3L3 SNP Missense_Mutation 19 7056372 G C 48 55 BRCA TCGA-E2-A1LH STXBP2 SNP Missense_Mutation 19 7707892 G C 33 60 BRCA TCGA-E2-A1LH DDX18 SNP Missense_Mutation 2 118582195 G C 33 99 BRCA TCGA-E2-A1LH TTN SNP Silent 2 179477137 G C 45 49 BRCA TCGA-E2-A1LH NIF3L1 SNP Missense_Mutation 2 201764124 C T 31 22 BRCA TCGA-E2-A1LH SPHKAP SNP Missense_Mutation 2 228846465 T A 54 82 BRCA TCGA-E2-A1LH SP110 SNP Silent 2 231079807 C T 29 72 BRCA TCGA-E2-A1LH UGT1A5 SNP Silent 2 234622270 C A 29 50 BRCA TCGA-E2-A1LH SLC4A5 SNP Missense_Mutation 2 74466568 T G 56 75 BRCA TCGA-E2-A1LH CST7 SNP Missense_Mutation 20 24937952 G C 48 49 BRCA TCGA-E2-A1LH RBM12 SNP Missense_Mutation 20 34240553 C T 24 97 BRCA TCGA-E2-A1LH RIMS4 SNP Missense_Mutation 20 43386365 C G 30 100 BRCA TCGA-E2-A1LH LAMA5 SNP Silent 20 60909006 G A 38 38 BRCA TCGA-E2-A1LH DSCAM SNP Silent 21 41459120 A C 7 51 BRCA TCGA-E2-A1LH MYO18B SNP Missense_Mutation 22 26272182 C G 30 55 BRCA TCGA-E2-A1LH GGA1 SNP Silent 22 38016265 G A 39 35 BRCA TCGA-E2-A1LH PACSIN2 SNP Missense_Mutation 22 43275089 C G 32 58 BRCA TCGA-E2-A1LH TIMM8A SNP Missense_Mutation 23 100601591 C T 17 97 BRCA TCGA-E2-A1LH SLC9A6 SNP Missense_Mutation 23 135077034 C A 30 92 BRCA TCGA-E2-A1LH MAGEA12 SNP Missense_Mutation 23 151900530 C G 32 55 BRCA TCGA-E2-A1LH CACNA1F SNP Silent 23 49063555 G C 45 58 BRCA TCGA-E2-A1LH PHKA1 SNP Missense_Mutation 23 71855080 G A 35 68 BRCA TCGA-E2-A1LH HDX SNP Missense_Mutation 23 83724316 G C 45 82 BRCA TCGA-E2-A1LH FANCD2 SNP Missense_Mutation 3 10128882 C G 32 84 BRCA TCGA-E2-A1LH WDR52 SNP Missense_Mutation 3 113119482 G T 43 72 BRCA TCGA-E2-A1LH POGLUT1 SNP Missense_Mutation 3 119209519 C G 26 79 BRCA TCGA-E2-A1LH COLQ SNP Silent 3 15515753 C G 21 57 BRCA TCGA-E2-A1LH SERPINI2 SNP Silent 3 167184946 A G 8 80 BRCA TCGA-E2-A1LH SLC7A14 SNP Silent 3 170201192 C T 23 0 BRCA TCGA-E2-A1LH HRG SNP Missense_Mutation 3 186389561 G C 37 65 BRCA TCGA-E2-A1LH ATP13A4 SNP Missense_Mutation 3 193156267 A C 12 92 BRCA TCGA-E2-A1LH SCN11A SNP Missense_Mutation 3 38951681 T A 49 43 BRCA TCGA-E2-A1LH ULK4 SNP Missense_Mutation 3 41757046 A C 11 60 BRCA TCGA-E2-A1LH PTPN23 SNP Missense_Mutation 3 47452898 C G 17 75 BRCA TCGA-E2-A1LH OR5K1 SNP Missense_Mutation 3 98189042 G C 36 63 BRCA TCGA-E2-A1LH NFKB1 SNP Missense_Mutation 4 103459076 C G 32 93 BRCA TCGA-E2-A1LH PCDH10 SNP Missense_Mutation 4 134073838 C G 20 95 BRCA TCGA-E2-A1LH GRAMD3 SNP Missense_Mutation 5 125759303 C G 20 80 BRCA TCGA-E2-A1LH PCDHAC2 DEL Frame_Shift_Del 5 140348549 GCTACACT - 38 43 BRCA TCGA-E2-A1LH SPINK5 SNP Missense_Mutation 5 147469120 G C 45 67 BRCA TCGA-E2-A1LH RANBP3L SNP Missense_Mutation 5 36268305 A T 4 51 BRCA TCGA-E2-A1LH MAST4 SNP Splice_Site 5 66432390 G A 33 100 BRCA TCGA-E2-A1LH CCDC125 SNP Silent 5 68595848 T G 55 53 BRCA TCGA-E2-A1LH NR2F1 SNP Missense_Mutation 5 92923685 G A 39 99 BRCA TCGA-E2-A1LH SLC18B1 SNP Missense_Mutation 6 133100532 C G 24 49 BRCA TCGA-E2-A1LH PCMT1 SNP Missense_Mutation 6 150070927 G A 41 69 BRCA TCGA-E2-A1LH C6orf123 SNP Missense_Mutation 6 168191674 G C 35 50 BRCA TCGA-E2-A1LH ZKSCAN4 SNP Missense_Mutation 6 28219418 C A 23 58 BRCA TCGA-E2-A1LH FGD2 INS Frame_Shift_Ins 6 36995284 - C 42 73 BRCA TCGA-E2-A1LH MEA1 SNP Missense_Mutation 6 42980860 C G 31 72 BRCA TCGA-E2-A1LH KLHDC3 SNP Missense_Mutation 6 42986864 G C 45 68 BRCA TCGA-E2-A1LH TTBK1 SNP Missense_Mutation 6 43223320 C A 24 74 BRCA TCGA-E2-A1LH GPR111 SNP Missense_Mutation 6 47646792 G A 47 55 BRCA TCGA-E2-A1LH DOPEY1 SNP Silent 6 83841993 T G 56 55 BRCA TCGA-E2-A1LH KIAA1009 SNP Missense_Mutation 6 84862461 T G 56 69 BRCA TCGA-E2-A1LH MUC12 DEL Frame_Shift_Del 7 100656338 GTGAACAA - 48 58 BRCA TCGA-E2-A1LH MLL5 SNP Missense_Mutation 7 104752795 A G 14 62 BRCA TCGA-E2-A1LH AKR1D1 SNP Missense_Mutation 7 137776547 C T 23 57 BRCA TCGA-E2-A1LH ETV1 SNP Silent 7 13949273 G T 41 50 BRCA TCGA-E2-A1LH SLC4A2 SNP Silent 7 150773264 G A 33 63 BRCA TCGA-E2-A1LH XRCC2 SNP Missense_Mutation 7 152346029 C T 32 55 BRCA TCGA-E2-A1LH DNAH11 SNP Missense_Mutation 7 21639618 C G 24 55 BRCA TCGA-E2-A1LH BBS9 SNP Missense_Mutation 7 33573686 C G 21 61 BRCA TCGA-E2-A1LH KDELR2 SNP Splice_Site 7 6509386 C G 24 100 BRCA TCGA-E2-A1LH NSUN5 SNP Missense_Mutation 7 72718027 G C 39 47 BRCA TCGA-E2-A1LH UBR5 SNP Missense_Mutation 8 103282400 C A 32 97 BRCA TCGA-E2-A1LH EIF3E SNP Silent 8 109228677 A G 5 64 BRCA TCGA-E2-A1LH FAM49B SNP Silent 8 130867881 G A 45 59 BRCA TCGA-E2-A1LH LZTS1 SNP Missense_Mutation 8 20110933 G A 38 57 BRCA TCGA-E2-A1LH MYOM2 SNP Missense_Mutation 8 2041867 A T 12 51 BRCA TCGA-E2-A1LH RAB11FIP1 SNP Missense_Mutation 8 37730075 C G 32 46 BRCA TCGA-E2-A1LH PLAT SNP Missense_Mutation 8 42045512 G T 45 63 BRCA TCGA-E2-A1LH RB1CC1 SNP Missense_Mutation 8 53586778 C T 32 84 BRCA TCGA-E2-A1LH POP1 SNP Silent 8 99158821 T A 62 47 BRCA TCGA-E2-A1LH FREM1 SNP Missense_Mutation 9 14859447 A G 12 54 BRCA TCGA-E2-A1LH TLN1 SNP Missense_Mutation 9 35707382 G A 35 88 BRCA TCGA-E2-A1LH PCSK5 SNP Missense_Mutation 9 78799667 G C 43 95 BRCA TCGA-E2-A1LI CREB3L4 SNP Missense_Mutation 1 153945720 G C 41 70 BRCA TCGA-E2-A1LI IGFN1 SNP Missense_Mutation 1 201182360 C A 30 54 BRCA TCGA-E2-A1LI USH2A SNP Missense_Mutation 1 215932045 C T 29 56 BRCA TCGA-E2-A1LI OR11L1 SNP Missense_Mutation 1 248005024 T G 49 88 BRCA TCGA-E2-A1LI EIF2C1 SNP Missense_Mutation 1 36358824 C G 30 88 BRCA TCGA-E2-A1LI AKR1C2 SNP Missense_Mutation 10 5034041 C T 31 60 BRCA TCGA-E2-A1LI RPL6 SNP Silent 12 112846113 G C 37 51 BRCA TCGA-E2-A1LI MRPS31 SNP Missense_Mutation 13 41333214 C G 26 72 BRCA TCGA-E2-A1LI KIAA0317 SNP Missense_Mutation 14 75136706 C A 28 100 BRCA TCGA-E2-A1LI TUBGCP5 SNP Silent 15 22855186 G A 48 61 BRCA TCGA-E2-A1LI NARG2 SNP Missense_Mutation 15 60720860 G C 33 63 BRCA TCGA-E2-A1LI LILRA5 SNP Missense_Mutation 19 54823313 C T 19 34 BRCA TCGA-E2-A1LI MSTN SNP Silent 2 190925034 T A 63 54 BRCA TCGA-E2-A1LI OTOF SNP Missense_Mutation 2 26698897 G A 38 54 BRCA TCGA-E2-A1LI FAHD2A SNP Missense_Mutation 2 96078498 C G 30 85 BRCA TCGA-E2-A1LI TTC3 SNP Missense_Mutation 21 38524309 C A 22 80 BRCA TCGA-E2-A1LI GPRASP1 SNP Missense_Mutation 23 101911705 C G 26 47 BRCA TCGA-E2-A1LI WDR52 SNP Missense_Mutation 3 113060733 T C 52 45 BRCA TCGA-E2-A1LI SYNPR SNP Missense_Mutation 3 63466619 G C 46 93 BRCA TCGA-E2-A1LI FREM3 SNP Silent 4 144614306 G A 40 48 BRCA TCGA-E2-A1LI FAM13A SNP Missense_Mutation 4 89708952 C A 27 74 BRCA TCGA-E2-A1LI HIST1H2AK SNP Missense_Mutation 6 27806084 G C 37 63 BRCA TCGA-E2-A1LI ATP5J2-PTCD1 SNP Silent 7 99021452 T C 56 50 BRCA TCGA-E2-A1LI CYHR1 SNP Missense_Mutation 8 145675924 G C 40 38 BRCA TCGA-E2-A1LI LRRC8A SNP Missense_Mutation 9 131678540 G C 37 93 BRCA TCGA-E2-A1LK CHI3L1 INS Frame_Shift_Ins 1 203154343 - C 34 71 BRCA TCGA-E2-A1LK ABCB10 SNP Missense_Mutation 1 229676385 C G 32 100 BRCA TCGA-E2-A1LK ABCB10 SNP Missense_Mutation 1 229678083 C G 29 65 BRCA TCGA-E2-A1LK DIP2C SNP Silent 10 395377 C T 27 29 BRCA TCGA-E2-A1LK FAM208B SNP Missense_Mutation 10 5788704 T C 55 52 BRCA TCGA-E2-A1LK LARP4B SNP Nonsense_Mutation 10 875659 G A 37 58 BRCA TCGA-E2-A1LK SLC43A1 SNP Silent 11 57252590 G A 38 47 BRCA TCGA-E2-A1LK PGA3 SNP Missense_Mutation 11 60975059 C T 17 55 BRCA TCGA-E2-A1LK DGAT2 SNP Missense_Mutation 11 75501262 A G 8 85 BRCA TCGA-E2-A1LK AQP11 SNP Missense_Mutation 11 77301600 G A 37 56 BRCA TCGA-E2-A1LK CAPRIN2 SNP Silent 12 30872133 C A 19 48 BRCA TCGA-E2-A1LK SAMD4A SNP Missense_Mutation 14 55255646 G A 39 94 BRCA TCGA-E2-A1LK USP8 SNP Missense_Mutation 15 50741617 T G 63 62 BRCA TCGA-E2-A1LK GTF3C1 SNP Missense_Mutation 16 27497439 T G 57 78 BRCA TCGA-E2-A1LK CCDC144NL SNP Missense_Mutation 17 20799309 G A 38 42 BRCA TCGA-E2-A1LK TMEM101 SNP Silent 17 42090413 G A 39 45 BRCA TCGA-E2-A1LK UBTF SNP Missense_Mutation 17 42290592 C T 31 71 BRCA TCGA-E2-A1LK ALOX15 SNP Missense_Mutation 17 4535496 C T 27 55 BRCA TCGA-E2-A1LK RPS6KB1 SNP Splice_site 17 57987923 G A 43 91 BRCA TCGA-E2-A1LK ZNF69 SNP Missense_Mutation 19 12016691 G C 46 53 BRCA TCGA-E2-A1LK NCAN SNP Missense_Mutation 19 19359641 G A 37 57 BRCA TCGA-E2-A1LK EDAR SNP Silent 2 109547441 C T 27 47 BRCA TCGA-E2-A1LK CNTNAP5 SNP Silent 2 125405531 G A 38 33 BRCA TCGA-E2-A1LK TTN SNP Missense_Mutation 2 179581989 T G 64 71 BRCA TCGA-E2-A1LK DZANK1 SNP Missense_Mutation 20 18414355 C T 17 62 BRCA TCGA-E2-A1LK MMP9 SNP Silent 20 44637580 G A 34 52 BRCA TCGA-E2-A1LK PRDM15 SNP Silent 21 43256225 G A 40 49 BRCA TCGA-E2-A1LK CDC42EP1 SNP Silent 22 37964206 C T 23 40 BRCA TCGA-E2-A1LK EFCAB6 SNP Silent 22 44004466 G A 39 28 BRCA TCGA-E2-A1LK GLUD2 SNP Missense_Mutation 23 120181770 G A 38 63 BRCA TCGA-E2-A1LK MTCP1NB SNP Silent 23 154292281 C T 19 50 BRCA TCGA-E2-A1LK CXorf38 SNP Silent 23 40506283 G T 39 42 BRCA TCGA-E2-A1LK KDM6A DEL Splice_site 23 44894229 AAGT - 1 69 BRCA TCGA-E2-A1LK HDAC6 SNP Silent 23 48675747 T A 55 57 BRCA TCGA-E2-A1LK GRK7 SNP Missense_Mutation 3 141499486 T C 56 70 BRCA TCGA-E2-A1LK XPC SNP Silent 3 14190419 C T 30 50 BRCA TCGA-E2-A1LK MUC4 SNP Missense_Mutation 3 195515134 G T 35 58 BRCA TCGA-E2-A1LK UBA7 SNP Missense_Mutation 3 49845239 C T 27 78 BRCA TCGA-E2-A1LK CACNA1D SNP Missense_Mutation 3 53804500 G A 37 100 BRCA TCGA-E2-A1LK GRM7 SNP Missense_Mutation 3 7188164 C T 19 100 BRCA TCGA-E2-A1LK GABRA4 SNP Missense_Mutation 4 46967096 T G 49 88 BRCA TCGA-E2-A1LK EPHA5 SNP Silent 4 66286192 G T 45 55 BRCA TCGA-E2-A1LK SERAC1 DEL Splice_site 6 158535820 CC - 18 100 BRCA TCGA-E2-A1LK C6orf70 SNP Missense_Mutation 6 170159085 G A 40 40 BRCA TCGA-E2-A1LK PLEC SNP Silent 8 144995814 C T 23 23 BRCA TCGA-E2-A1LK XKR4 SNP Missense_Mutation 8 56435983 G A 38 86 BRCA TCGA-E2-A1LL LCE2B SNP Missense_Mutation 1 152659414 G T 46 54 BRCA TCGA-E2-A1LL HMGB4 SNP Silent 1 34329930 G A 39 28 BRCA TCGA-E2-A1LL CPXM2 SNP Missense_Mutation 10 125651030 C T 27 50 BRCA TCGA-E2-A1LL METTL10 SNP Missense_Mutation 10 126453973 C G 29 67 BRCA TCGA-E2-A1LL FANK1 SNP Missense_Mutation 10 127585218 C A 26 65 BRCA TCGA-E2-A1LL C10orf91 SNP Missense_Mutation 10 134261527 G A 48 47 BRCA TCGA-E2-A1LL PRKCQ SNP Silent 10 6553110 G A 35 54 BRCA TCGA-E2-A1LL UNC5B SNP Splice_Site 10 73046627 G T 44 100 BRCA TCGA-E2-A1LL MMRN2 SNP Missense_Mutation 10 88704043 T A 50 49 BRCA TCGA-E2-A1LL PTEN DEL Frame_Shift_Del 10 89720826 AC - 10 89 BRCA TCGA-E2-A1LL INPPL1 SNP Missense_Mutation 11 71943304 G A 40 96 BRCA TCGA-E2-A1LL IAPP SNP Splice_site 12 21531360 G T 33 61 BRCA TCGA-E2-A1LL BRF1 SNP Missense_Mutation 14 105766846 C A 18 87 BRCA TCGA-E2-A1LL DLGAP5 SNP Missense_Mutation 14 55621420 T C 60 51 BRCA TCGA-E2-A1LL SPTB SNP Missense_Mutation 14 65239994 C G 32 98 BRCA TCGA-E2-A1LL TRPM1 SNP Missense_Mutation 15 31294084 T C 52 55 BRCA TCGA-E2-A1LL PEAK1 SNP Missense_Mutation 15 77474196 T A 56 79 BRCA TCGA-E2-A1LL GOLGA6L10 SNP Missense_Mutation 15 82635170 C T 23 51 BRCA TCGA-E2-A1LL MGAT5B SNP Nonsense_Mutation 17 74902194 G A 47 98 BRCA TCGA-E2-A1LL RPL26 SNP Missense_Mutation 17 8280943 C T 27 92 BRCA TCGA-E2-A1LL RYR1 SNP Silent 19 38959725 C A 30 60 BRCA TCGA-E2-A1LL MUC16 SNP Silent 19 9069296 G A 40 50 BRCA TCGA-E2-A1LL TTN SNP Silent 2 179477095 A G 3 57 BRCA TCGA-E2-A1LL NRP2 SNP Splice_site 2 206630294 G T 43 88 BRCA TCGA-E2-A1LL XRCC5 SNP Silent 2 217055015 G A 33 60 BRCA TCGA-E2-A1LL CYP27A1 SNP Missense_Mutation 2 219679713 A G 4 51 BRCA TCGA-E2-A1LL SPHKAP SNP Missense_Mutation 2 228883047 C G 24 44 BRCA TCGA-E2-A1LL LRRFIP1 SNP Missense_Mutation 2 238643948 G A 37 58 BRCA TCGA-E2-A1LL EFR3B SNP Missense_Mutation 2 25366711 C G 22 96 BRCA TCGA-E2-A1LL SNX17 SNP Missense_Mutation 2 27598788 T A 49 89 BRCA TCGA-E2-A1LL HK2 SNP Missense_Mutation 2 75099526 C T 21 55 BRCA TCGA-E2-A1LL SUN5 SNP Silent 20 31572971 C T 24 49 BRCA TCGA-E2-A1LL CNKSR2 SNP Missense_Mutation 23 21666975 G C 33 73 BRCA TCGA-E2-A1LL ITM2A SNP Missense_Mutation 23 78618485 C A 20 57 BRCA TCGA-E2-A1LL PLOD2 SNP Silent 3 145809641 C T 24 60 BRCA TCGA-E2-A1LL MCF2L2 SNP Splice_site 3 183013089 C G 23 49 BRCA TCGA-E2-A1LL FAM208A SNP Missense_Mutation 3 56675495 T C 62 78 BRCA TCGA-E2-A1LL BOD1L1 SNP Missense_Mutation 4 13606148 T A 60 52 BRCA TCGA-E2-A1LL NAA11 SNP Silent 4 80246366 T C 55 41 BRCA TCGA-E2-A1LL NPM1 SNP Silent 5 170827202 G A 38 45 BRCA TCGA-E2-A1LL MXD3 SNP Missense_Mutation 5 176734438 G T 44 65 BRCA TCGA-E2-A1LL LRRC14B SNP Silent 5 195276 C T 19 44 BRCA TCGA-E2-A1LL PIK3R1 DEL In_Frame_Del 5 67591118 ATCCAGCTGAGAAAGACGAGA - 16 90 BRCA TCGA-E2-A1LL SYNE1 SNP Missense_Mutation 6 152749432 C G 24 43 BRCA TCGA-E2-A1LL SYNE1 SNP Missense_Mutation 6 152809633 T G 56 58 BRCA TCGA-E2-A1LL HTR5A SNP Missense_Mutation 7 154863345 G T 48 55 BRCA TCGA-E2-A1LL HDAC9 SNP Missense_Mutation 7 18669013 G T 33 73 BRCA TCGA-E2-A1LL TWISTNB SNP Missense_Mutation 7 19748611 C T 23 46 BRCA TCGA-E2-A1LL NCF1 SNP Missense_Mutation 7 74197317 G A 38 74 BRCA TCGA-E2-A1LL KIAA1324L SNP Silent 7 86554947 C T 23 39 BRCA TCGA-E2-A1LL DNAI1 SNP Splice_Site 9 34500839 T G 57 86 BRCA TCGA-E2-A1LL ANKRD18A SNP Missense_Mutation 9 38595563 T C 56 52 BRCA TCGA-E2-A1LS ARHGEF10L SNP Silent 1 17991021 G A 47 60 BRCA TCGA-E2-A1LS ASPM SNP Missense_Mutation 1 197102711 G T 33 58 BRCA TCGA-E2-A1LS PIGR SNP Missense_Mutation 1 207104865 T C 63 38 BRCA TCGA-E2-A1LS C4BPA SNP Missense_Mutation 1 207288791 G A 40 42 BRCA TCGA-E2-A1LS DEM1 DEL Frame_Shift_Del 1 40980239 AGACAGTGTCAGCAGAAGCCTCAGGGTTCTC - 11 59 BRCA TCGA-E2-A1LS NEUROG3 SNP Missense_Mutation 10 71332562 G T 46 61 BRCA TCGA-E2-A1LS DYNC2H1 SNP Missense_Mutation 11 103074420 A T 3 58 BRCA TCGA-E2-A1LS ARHGAP20 SNP Missense_Mutation 11 110451644 C T 26 50 BRCA TCGA-E2-A1LS PIK3C2A SNP Missense_Mutation 11 17118747 G C 45 100 BRCA TCGA-E2-A1LS TH SNP Missense_Mutation 11 2192959 C G 29 86 BRCA TCGA-E2-A1LS OR5M11 SNP Missense_Mutation 11 56310459 G T 41 68 BRCA TCGA-E2-A1LS OR5M10 DNP Missense_Mutation 11 56344846 TT AG 52 86 BRCA TCGA-E2-A1LS CAPN1 SNP Missense_Mutation 11 64953645 A C 1 85 BRCA TCGA-E2-A1LS RNASEH2C DEL Frame_Shift_Del 11 65487853 CCCGTAGACAGCGG - 22 67 BRCA TCGA-E2-A1LS CCDC87 SNP Missense_Mutation 11 66358801 C G 32 51 BRCA TCGA-E2-A1LS ODZ4 SNP Silent 11 78387425 G T 41 53 BRCA TCGA-E2-A1LS NLRP10 SNP Silent 11 7982328 T A 61 38 BRCA TCGA-E2-A1LS DLG2 SNP Missense_Mutation 11 83344318 T C 62 92 BRCA TCGA-E2-A1LS PIWIL4 SNP Silent 11 94322383 G T 47 51 BRCA TCGA-E2-A1LS TUBA1A SNP Missense_Mutation 12 49580453 G A 40 98 BRCA TCGA-E2-A1LS VWF SNP Missense_Mutation 12 6122772 T C 50 68 BRCA TCGA-E2-A1LS SACS SNP Missense_Mutation 13 23913912 C T 28 85 BRCA TCGA-E2-A1LS ZC3H13 DEL Frame_Shift_Del 13 46549603 CT - 28 51 BRCA TCGA-E2-A1LS CDADC1 SNP Missense_Mutation 13 49830003 T C 61 59 BRCA TCGA-E2-A1LS GPC6 SNP Missense_Mutation 13 94197607 A T 1 64 BRCA TCGA-E2-A1LS MAP1A SNP Missense_Mutation 15 43815340 A G 13 78 BRCA TCGA-E2-A1LS ONECUT1 SNP Missense_Mutation 15 53081031 A G 6 86 BRCA TCGA-E2-A1LS SRCAP DEL Frame_Shift_Del 16 30723194 CATT - 17 65 BRCA TCGA-E2-A1LS FUS SNP Missense_Mutation 16 31195247 T A 54 69 BRCA TCGA-E2-A1LS BCMO1 SNP Missense_Mutation 16 81301669 A T 3 88 BRCA TCGA-E2-A1LS SLC43A2 SNP Missense_Mutation 17 1486583 G T 36 84 BRCA TCGA-E2-A1LS NF1 DEL Frame_Shift_Del 17 29527502 AG - 7 46 BRCA TCGA-E2-A1LS EFCAB3 SNP Missense_Mutation 17 60493497 T C 64 73 BRCA TCGA-E2-A1LS TP53 SNP Missense_Mutation 17 7577082 C T 30 80 BRCA TCGA-E2-A1LS ACTG1 SNP Missense_Mutation 17 79478402 T C 54 74 BRCA TCGA-E2-A1LS FCGBP SNP Missense_Mutation 19 40357561 C A 18 54 BRCA TCGA-E2-A1LS FCGBP SNP Missense_Mutation 19 40430361 C T 19 73 BRCA TCGA-E2-A1LS LILRA6 SNP Silent 19 54745621 G A 41 45 BRCA TCGA-E2-A1LS SBK2 SNP Missense_Mutation 19 56047657 G T 43 65 BRCA TCGA-E2-A1LS NLRP11 SNP Silent 19 56320356 C T 27 38 BRCA TCGA-E2-A1LS SERPINE2 SNP Missense_Mutation 2 224847402 T C 61 59 BRCA TCGA-E2-A1LS EPT1 SNP Missense_Mutation 2 26587719 C T 27 82 BRCA TCGA-E2-A1LS CIB4 SNP Missense_Mutation 2 26806664 G T 40 49 BRCA TCGA-E2-A1LS SUPT7L DEL Frame_Shift_Del 2 27883995 TC - 62 76 BRCA TCGA-E2-A1LS PRKD3 DEL Frame_Shift_Del 2 37543569 CTTAG - 32 56 BRCA TCGA-E2-A1LS DSCAM SNP Missense_Mutation 21 41725667 G T 47 96 BRCA TCGA-E2-A1LS UMODL1 SNP Missense_Mutation 21 43543099 G C 37 74 BRCA TCGA-E2-A1LS TOP3B SNP Silent 22 22318572 A T 11 47 BRCA TCGA-E2-A1LS BPIFC SNP Missense_Mutation 22 32853309 G T 41 74 BRCA TCGA-E2-A1LS MYH9 SNP Nonsense_Mutation 22 36680272 G A 46 99 BRCA TCGA-E2-A1LS TCEAL3 SNP Missense_Mutation 23 102864236 G A 43 59 BRCA TCGA-E2-A1LS SCML1 DEL Frame_Shift_Del 23 17770041 AG - 7 35 BRCA TCGA-E2-A1LS APOOL SNP Missense_Mutation 23 84329041 T A 52 58 BRCA TCGA-E2-A1LS ARHGAP31 SNP Missense_Mutation 3 119128524 G C 33 76 BRCA TCGA-E2-A1LS TMEM115 SNP Silent 3 50392897 T C 56 49 BRCA TCGA-E2-A1LS ROBO2 SNP Missense_Mutation 3 77614243 T A 58 52 BRCA TCGA-E2-A1LS C4orf21 SNP Missense_Mutation 4 113544995 C G 20 71 BRCA TCGA-E2-A1LS GUCY1B3 SNP Missense_Mutation 4 156723562 A G 1 90 BRCA TCGA-E2-A1LS PLAC8 SNP Missense_Mutation 4 84015928 T C 58 73 BRCA TCGA-E2-A1LS HSPA4 DEL In_Frame_Del 5 132439997 AAAAATGCAGAGCAG - 1 63 BRCA TCGA-E2-A1LS CDHR2 SNP Missense_Mutation 5 176017599 A T 2 48 BRCA TCGA-E2-A1LS CMYA5 SNP Missense_Mutation 5 79041083 G T 33 67 BRCA TCGA-E2-A1LS SHPRH SNP Missense_Mutation 6 146247363 G A 38 52 BRCA TCGA-E2-A1LS PGBD1 SNP Silent 6 28269872 G A 37 46 BRCA TCGA-E2-A1LS GPR110 SNP Silent 6 46982477 G A 35 52 BRCA TCGA-E2-A1LS HCRTR2 SNP Missense_Mutation 6 55145230 A T 13 89 BRCA TCGA-E2-A1LS DST SNP Silent 6 56485202 A C 7 24 BRCA TCGA-E2-A1LS MALSU1 SNP Silent 7 23349135 G C 45 51 BRCA TCGA-E2-A1LS MSRA SNP Silent 8 10285663 T C 64 44 BRCA TCGA-E2-A1LS ANK1 SNP Missense_Mutation 8 41526060 C A 23 64 BRCA TCGA-E2-A1LS RP1 INS Frame_Shift_Ins 8 55540278 - T 20 48 BRCA TCGA-E2-A1LS ANKS6 SNP Missense_Mutation 9 101530484 T A 64 65 BRCA TCGA-E2-A1LS DNM1 SNP Missense_Mutation 9 131010957 C A 20 58 BRCA TCGA-E2-A1LS NTRK2 SNP Missense_Mutation 9 87366922 G A 46 86 BRCA TCGA-E9-A1N3 CELA2A SNP Missense_Mutation 1 15788123 G T 34 54 BRCA TCGA-E9-A1N3 ADCY10 SNP Silent 1 167793766 G T 39 52 BRCA TCGA-E9-A1N3 MATN1 SNP Missense_Mutation 1 31191659 T A 55 68 BRCA TCGA-E9-A1N3 GATA3 INS Frame_Shift_Ins 10 8115955 - C 6 92 BRCA TCGA-E9-A1N3 OR5T1 SNP Splice_site 11 56043116 T C 51 50 BRCA TCGA-E9-A1N3 SLC22A10 SNP Splice_site 11 63072159 G A 42 58 BRCA TCGA-E9-A1N3 NAV3 SNP Missense_Mutation 12 78569113 C A 32 100 BRCA TCGA-E9-A1N3 APAF1 SNP Missense_Mutation 12 99074131 C G 32 97 BRCA TCGA-E9-A1N3 PITPNC1 SNP Missense_Mutation 17 65688873 G A 40 73 BRCA TCGA-E9-A1N3 ZNF14 SNP Missense_Mutation 19 19823822 C A 17 52 BRCA TCGA-E9-A1N3 SUPT5H SNP Nonsense_Mutation 19 39964082 C T 17 93 BRCA TCGA-E9-A1N3 LILRB4 SNP Missense_Mutation 19 55176608 C T 24 50 BRCA TCGA-E9-A1N3 SLC2A4RG SNP Silent 20 62373244 G A 35 52 BRCA TCGA-E9-A1N3 EP300 INS Frame_Shift_Ins 22 41527610 - G 21 87 BRCA TCGA-E9-A1N3 COL6A5 SNP Missense_Mutation 3 130116598 C T 27 82 BRCA TCGA-E9-A1N3 OR5K2 SNP Missense_Mutation 3 98216606 T G 60 53 BRCA TCGA-E9-A1N3 MTTP SNP Silent 4 100510904 T C 51 54 BRCA TCGA-E9-A1N3 DOCK2 SNP Missense_Mutation 5 169445994 T A 51 90 BRCA TCGA-E9-A1N3 AKD1 SNP Missense_Mutation 6 109993173 C A 17 53 BRCA TCGA-E9-A1N3 CUX1 SNP Nonsense_Mutation 7 101740745 G T 33 100 BRCA TCGA-E9-A1N3 MCM7 SNP Missense_Mutation 7 99696737 C T 19 94 BRCA TCGA-E9-A1N4 MDM4 SNP Missense_Mutation 1 204507346 G A 33 58 BRCA TCGA-E9-A1N4 TCERG1L SNP Missense_Mutation 10 133058579 G A 38 57 BRCA TCGA-E9-A1N4 ITGA8 SNP Missense_Mutation 10 15614253 A G 7 82 BRCA TCGA-E9-A1N4 TRIM64B SNP Silent 11 89607385 G C 37 47 BRCA TCGA-E9-A1N4 TXNRD1 SNP Missense_Mutation 12 104682625 G A 39 52 BRCA TCGA-E9-A1N4 ABCC9 SNP Missense_Mutation 12 22005315 G A 40 76 BRCA TCGA-E9-A1N4 KCNA5 SNP Missense_Mutation 12 5153951 T A 62 75 BRCA TCGA-E9-A1N4 TMPO SNP Missense_Mutation 12 98926744 G A 37 76 BRCA TCGA-E9-A1N4 FREM2 SNP Missense_Mutation 13 39453040 G A 45 66 BRCA TCGA-E9-A1N4 DHRS12 SNP Silent 13 52345423 G A 45 53 BRCA TCGA-E9-A1N4 MAPKBP1 SNP Splice_site 15 42111445 C T 25 68 BRCA TCGA-E9-A1N4 BZRAP1 SNP Splice_site 17 56382901 C G 24 81 BRCA TCGA-E9-A1N4 CALR3 SNP Silent 19 16593495 C T 19 32 BRCA TCGA-E9-A1N4 CHAF1B SNP Silent 21 37771831 A G 16 39 BRCA TCGA-E9-A1N4 F8 SNP Nonsense_Mutation 23 154159944 C T 30 77 BRCA TCGA-E9-A1N4 DCAF8L1 SNP Missense_Mutation 23 27999081 C A 18 58 BRCA TCGA-E9-A1N4 MXRA5 SNP Missense_Mutation 23 3235331 C T 27 61 BRCA TCGA-E9-A1N4 KIF4A SNP Silent 23 69510363 C T 32 73 BRCA TCGA-E9-A1N4 MED12 SNP Missense_Mutation 23 70356252 G A 37 76 BRCA TCGA-E9-A1N4 FXR1 SNP Missense_Mutation 3 180680687 G C 33 83 BRCA TCGA-E9-A1N4 ZNF35 SNP Missense_Mutation 3 44701222 C T 17 60 BRCA TCGA-E9-A1N4 C4orf34 SNP Nonstop_Mutation 4 39553738 T A 50 54 BRCA TCGA-E9-A1N4 MAP3K1 SNP Nonsense_Mutation 5 56178577 G T 45 92 BRCA TCGA-E9-A1N4 POU3F2 SNP Silent 6 99283256 G C 41 58 BRCA TCGA-E9-A1N4 EMID2 SNP Silent 7 101091052 G T 41 50 BRCA TCGA-E9-A1N4 YWHAG SNP Missense_Mutation 7 75959501 G C 33 100 BRCA TCGA-E9-A1N4 SLC25A13 SNP Silent 7 95822421 G A 37 52 BRCA TCGA-E9-A1N4 LSM1 SNP Silent 8 38033806 G A 37 64 BRCA TCGA-E9-A1N4 NCOA2 SNP Missense_Mutation 8 71078828 G T 44 100 BRCA TCGA-E9-A1N5 PTPRC SNP Silent 1 198697545 C T 17 51 BRCA TCGA-E9-A1N5 TMCC2 SNP Missense_Mutation 1 205210727 C T 19 59 BRCA TCGA-E9-A1N5 CEP170 SNP Missense_Mutation 1 243327844 C T 24 79 BRCA TCGA-E9-A1N5 IFITM3 SNP Missense_Mutation 11 319891 T A 51 37 BRCA TCGA-E9-A1N5 MEN1 DEL Frame_Shift_Del 11 64577353 AGGTG - 15 84 BRCA TCGA-E9-A1N5 EHBP1L1 SNP Missense_Mutation 11 65350230 C G 32 53 BRCA TCGA-E9-A1N5 EHBP1L1 SNP Silent 11 65351789 C G 30 50 BRCA TCGA-E9-A1N5 EHBP1L1 SNP Nonsense_Mutation 11 65351858 C G 18 53 BRCA TCGA-E9-A1N5 SLCO1C1 SNP Missense_Mutation 12 20905442 G A 35 67 BRCA TCGA-E9-A1N5 CACNB3 SNP Missense_Mutation 12 49220772 A G 12 90 BRCA TCGA-E9-A1N5 MEF2A SNP Missense_Mutation 15 100247006 A G 3 91 BRCA TCGA-E9-A1N5 HERC1 SNP Missense_Mutation 15 64041947 G A 45 100 BRCA TCGA-E9-A1N5 C16orf48 SNP Silent 16 67697208 C A 25 47 BRCA TCGA-E9-A1N5 TP53 SNP Missense_Mutation 17 7578271 T C 51 76 BRCA TCGA-E9-A1N5 NEB DEL In_Frame_Del 2 152387588 CCTTGTTGTATT - 26 83 BRCA TCGA-E9-A1N5 DNMT3B SNP Silent 20 31376692 G A 48 52 BRCA TCGA-E9-A1N5 SAMHD1 SNP Missense_Mutation 20 35533890 C G 32 56 BRCA TCGA-E9-A1N5 LSM14B SNP Missense_Mutation 20 60701300 G A 45 53 BRCA TCGA-E9-A1N5 AFF2 SNP Missense_Mutation 23 147733596 G T 37 83 BRCA TCGA-E9-A1N5 DMD SNP Missense_Mutation 23 31165493 G A 38 96 BRCA TCGA-E9-A1N5 WNT7A SNP Missense_Mutation 3 13896211 C T 31 77 BRCA TCGA-E9-A1N5 PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-E9-A1N5 MUC4 SNP Missense_Mutation 3 195508571 T C 59 30 BRCA TCGA-E9-A1N5 MUC4 SNP Missense_Mutation 3 195513481 G A 46 39 BRCA TCGA-E9-A1N5 FGG SNP Splice_Site 4 155533321 T A 55 53 BRCA TCGA-E9-A1N5 GBA3 SNP Silent 4 22749308 G A 46 42 BRCA TCGA-E9-A1N5 HEXB SNP Missense_Mutation 5 73985157 C T 29 48 BRCA TCGA-E9-A1N5 UBR2 SNP Missense_Mutation 6 42585066 C T 25 69 BRCA TCGA-E9-A1N5 OR2A5 SNP Silent 7 143747698 T C 63 44 BRCA TCGA-E9-A1N5 SEPT14 SNP Silent 7 55914256 C T 29 50 BRCA TCGA-E9-A1N5 ZNF804B SNP Missense_Mutation 7 88963249 T C 52 40 BRCA TCGA-E9-A1N5 CDCA2 SNP Missense_Mutation 8 25341520 A G 16 37 BRCA TCGA-E9-A1N8 TXLNA SNP Missense_Mutation 1 32657943 T A 53 79 BRCA TCGA-E9-A1N8 THRAP3 SNP Missense_Mutation 1 36752151 A C 14 67 BRCA TCGA-E9-A1N8 HERC4 DEL Frame_Shift_Del 10 69695914 TTTG - 64 88 BRCA TCGA-E9-A1N8 BEST1 SNP Missense_Mutation 11 61727502 A G 6 64 BRCA TCGA-E9-A1N8 FAT3 SNP Missense_Mutation 11 92507249 G T 43 98 BRCA TCGA-E9-A1N8 RAB27A SNP Missense_Mutation 15 55497761 G A 45 82 BRCA TCGA-E9-A1N8 NFAT5 SNP Splice_Site 16 69729284 T G 57 83 BRCA TCGA-E9-A1N8 HPR DEL Frame_Shift_Del 16 72107693 GT - 40 56 BRCA TCGA-E9-A1N8 JMJD6 SNP Missense_Mutation 17 74716578 A C 4 92 BRCA TCGA-E9-A1N8 TP53 INS Frame_Shift_Ins 17 7577514 - T 48 80 BRCA TCGA-E9-A1N8 ARMC6 SNP Missense_Mutation 19 19168318 C A 25 50 BRCA TCGA-E9-A1N8 ZNF540 SNP Missense_Mutation 19 38103247 G A 37 50 BRCA TCGA-E9-A1N8 KLK13 SNP Silent 19 51563338 A G 1 50 BRCA TCGA-E9-A1N8 ZNF649 SNP Missense_Mutation 19 52394487 C G 32 47 BRCA TCGA-E9-A1N8 RANBP2 SNP Missense_Mutation 2 109367878 T G 50 66 BRCA TCGA-E9-A1N8 MERTK SNP Missense_Mutation 2 112740526 G T 44 47 BRCA TCGA-E9-A1N8 CCDC148 SNP Missense_Mutation 2 159170392 C G 20 47 BRCA TCGA-E9-A1N8 SCN9A SNP Missense_Mutation 2 167159671 C T 31 49 BRCA TCGA-E9-A1N8 BAGE2 SNP Splice_site 21 11058322 C T 31 67 BRCA TCGA-E9-A1N8 LZTR1 INS Frame_Shift_Ins 22 21351200 - GGCACTGGACATG 7 88 BRCA TCGA-E9-A1N8 RPL10 SNP Missense_Mutation 23 153628945 T C 62 83 BRCA TCGA-E9-A1N8 DMD SNP Missense_Mutation 23 31200885 A T 12 90 BRCA TCGA-E9-A1N8 MXRA5 DEL Frame_Shift_Del 23 3238507 AAAG - 1 74 BRCA TCGA-E9-A1N8 TBC1D25 SNP Missense_Mutation 23 48418750 T C 60 53 BRCA TCGA-E9-A1N8 MFSD1 SNP Missense_Mutation 3 158543842 C T 31 60 BRCA TCGA-E9-A1N8 MRS2 SNP Nonsense_Mutation 6 24409715 G T 33 100 BRCA TCGA-E9-A1N8 MDN1 SNP Missense_Mutation 6 90503844 C T 29 96 BRCA TCGA-E9-A1N8 MLL3 SNP Missense_Mutation 7 151962208 G C 45 98 BRCA TCGA-E9-A1N8 CLTA SNP Silent 9 36211699 C T 25 80 BRCA TCGA-E9-A1N8 PRUNE2 SNP Silent 9 79324112 A T 10 47 BRCA TCGA-E9-A1N9 PRAMEF11 SNP Missense_Mutation 1 12885090 T G 63 47 BRCA TCGA-E9-A1N9 ZNF687 INS In_Frame_Ins 1 151263677 - ACA 41 75 BRCA TCGA-E9-A1N9 PRRC2C SNP Silent 1 171494044 A G 1 60 BRCA TCGA-E9-A1N9 MACF1 SNP Missense_Mutation 1 39838233 T C 51 69 BRCA TCGA-E9-A1N9 RLF SNP Missense_Mutation 1 40702996 A T 4 47 BRCA TCGA-E9-A1N9 PRPF38A SNP Missense_Mutation 1 52871446 G C 45 77 BRCA TCGA-E9-A1N9 SLC39A12 SNP Missense_Mutation 10 18242296 G A 34 48 BRCA TCGA-E9-A1N9 MAML2 DEL In_Frame_Del 11 95825372 TGT - 55 51 BRCA TCGA-E9-A1N9 DHX8 SNP Missense_Mutation 17 41570310 C A 18 69 BRCA TCGA-E9-A1N9 ADAM11 SNP Missense_Mutation 17 42855138 G C 48 79 BRCA TCGA-E9-A1N9 KCNH6 SNP Silent 17 61619777 C A 29 69 BRCA TCGA-E9-A1N9 PITPNM3 SNP Missense_Mutation 17 6387550 G T 47 82 BRCA TCGA-E9-A1N9 RNF157 SNP Missense_Mutation 17 74150372 G A 40 61 BRCA TCGA-E9-A1N9 TP53 SNP Nonsense_Mutation 17 7578263 G A 39 67 BRCA TCGA-E9-A1N9 DMKN SNP Silent 19 36002487 G A 38 50 BRCA TCGA-E9-A1N9 PNMAL1 DEL In_Frame_Del 19 46973547 TTC - 60 33 BRCA TCGA-E9-A1N9 LILRB5 SNP Splice_Site 19 54758227 C T 18 47 BRCA TCGA-E9-A1N9 FAM84A SNP Silent 2 14774361 T C 64 71 BRCA TCGA-E9-A1N9 TANC1 SNP Missense_Mutation 2 160043450 T C 54 94 BRCA TCGA-E9-A1N9 SCN7A SNP Missense_Mutation 2 167273377 T C 49 58 BRCA TCGA-E9-A1N9 LRP2 SNP Splice_site 2 169993902 C A 24 68 BRCA TCGA-E9-A1N9 KRTAP22-2 SNP Missense_Mutation 21 31962623 G T 33 29 BRCA TCGA-E9-A1N9 DNAJC28 SNP Missense_Mutation 21 34860884 C G 26 56 BRCA TCGA-E9-A1N9 DNAJC28 SNP Silent 21 34861683 C T 29 52 BRCA TCGA-E9-A1N9 DIP2A SNP Silent 21 47910571 C G 23 31 BRCA TCGA-E9-A1N9 MID1 SNP Missense_Mutation 23 10442722 G A 44 85 BRCA TCGA-E9-A1N9 WDR13 SNP Missense_Mutation 23 48460302 C T 27 94 BRCA TCGA-E9-A1N9 CCDC39 SNP Missense_Mutation 3 180379771 C T 29 92 BRCA TCGA-E9-A1N9 ALG3 SNP Missense_Mutation 3 183963556 C T 19 70 BRCA TCGA-E9-A1N9 DCHS2 SNP Missense_Mutation 4 155160378 T A 60 50 BRCA TCGA-E9-A1N9 DCHS2 SNP Silent 4 155411020 G T 43 57 BRCA TCGA-E9-A1N9 LCORL SNP Missense_Mutation 4 17885617 C T 20 56 BRCA TCGA-E9-A1N9 EPHA5 SNP Missense_Mutation 4 66356262 A T 10 94 BRCA TCGA-E9-A1N9 PTPN13 SNP Missense_Mutation 4 87671758 C G 28 88 BRCA TCGA-E9-A1N9 PCDHA2 SNP Missense_Mutation 5 140174742 C T 23 65 BRCA TCGA-E9-A1N9 PCDHB6 SNP Silent 5 140531962 G A 39 46 BRCA TCGA-E9-A1N9 PCDHGB3 SNP Silent 5 140752364 C A 25 55 BRCA TCGA-E9-A1N9 GNB2L1 SNP Silent 5 180665141 G C 34 51 BRCA TCGA-E9-A1N9 CDH9 SNP Missense_Mutation 5 26881562 C A 32 83 BRCA TCGA-E9-A1N9 PARP8 SNP Nonsense_Mutation 5 50130705 G T 41 45 BRCA TCGA-E9-A1N9 MAP3K1 SNP Missense_Mutation 5 56177954 C T 30 90 BRCA TCGA-E9-A1N9 TMEM171 SNP Missense_Mutation 5 72424228 A T 4 66 BRCA TCGA-E9-A1N9 LPA SNP Missense_Mutation 6 161007579 T C 54 69 BRCA TCGA-E9-A1N9 EGFL8 SNP Missense_Mutation 6 32133979 G A 39 54 BRCA TCGA-E9-A1N9 HYAL4 SNP Missense_Mutation 7 123508629 A G 16 64 BRCA TCGA-E9-A1N9 ETV1 SNP Missense_Mutation 7 14025746 G T 40 72 BRCA TCGA-E9-A1N9 PTPRN2 SNP Missense_Mutation 7 157691399 G T 33 81 BRCA TCGA-E9-A1N9 NFE2L3 DEL Frame_Shift_Del 7 26225179 AA - 13 50 BRCA TCGA-E9-A1N9 STEAP1 SNP Silent 7 89790307 G A 45 50 BRCA TCGA-E9-A1N9 PTDSS1 SNP Missense_Mutation 8 97274333 G A 39 93 BRCA TCGA-E9-A1N9 OR13C5 SNP Missense_Mutation 9 107361066 G T 35 62 BRCA TCGA-E9-A1N9 GTF3C4 SNP Missense_Mutation 9 135553785 A G 7 88 BRCA TCGA-E9-A1NA SV2A SNP Missense_Mutation 1 149880762 C A 21 90 BRCA TCGA-E9-A1NA CDK11B SNP Missense_Mutation 1 1573174 C T 30 93 BRCA TCGA-E9-A1NA FCRL5 SNP Missense_Mutation 1 157504397 C A 25 49 BRCA TCGA-E9-A1NA PTPN14 SNP Silent 1 214568293 C T 31 18 BRCA TCGA-E9-A1NA SDE2 SNP Missense_Mutation 1 226175683 C G 29 68 BRCA TCGA-E9-A1NA WDR64 SNP Splice_Site 1 241936093 G T 35 72 BRCA TCGA-E9-A1NA CSMD2 SNP Missense_Mutation 1 34100819 T C 58 92 BRCA TCGA-E9-A1NA FGFR2 SNP Missense_Mutation 10 123247597 C T 17 100 BRCA TCGA-E9-A1NA GATA3 INS Frame_Shift_Ins 10 8111513 - G 51 47 BRCA TCGA-E9-A1NA NRG3 DEL In_Frame_Del 10 84711230 GAA - 45 82 BRCA TCGA-E9-A1NA MYOF SNP Missense_Mutation 10 95069836 C T 23 74 BRCA TCGA-E9-A1NA CRTAC1 SNP Missense_Mutation 10 99655137 G A 40 68 BRCA TCGA-E9-A1NA PANX3 SNP Missense_Mutation 11 124481538 G A 40 55 BRCA TCGA-E9-A1NA SLC17A6 SNP Missense_Mutation 11 22397628 T A 63 67 BRCA TCGA-E9-A1NA OR4A5 SNP Silent 11 51412084 G A 33 14 BRCA TCGA-E9-A1NA SSRP1 SNP Missense_Mutation 11 57093910 C G 32 74 BRCA TCGA-E9-A1NA KLHL35 SNP Missense_Mutation 11 75136581 C T 19 81 BRCA TCGA-E9-A1NA OAS2 SNP Missense_Mutation 12 113435403 G T 43 71 BRCA TCGA-E9-A1NA GALNT9 SNP Missense_Mutation 12 132685719 T G 62 65 BRCA TCGA-E9-A1NA ACVRL1 SNP Missense_Mutation 12 52307765 T G 55 89 BRCA TCGA-E9-A1NA SMARCC2 SNP Missense_Mutation 12 56580003 T C 63 90 BRCA TCGA-E9-A1NA NAV3 SNP Missense_Mutation 12 78530992 G C 39 75 BRCA TCGA-E9-A1NA ATP11A SNP Silent 13 113481187 C A 29 35 BRCA TCGA-E9-A1NA NID2 SNP Silent 14 52493941 G A 39 33 BRCA TCGA-E9-A1NA STARD9 SNP Missense_Mutation 15 42982291 G A 45 55 BRCA TCGA-E9-A1NA MYO9A SNP Splice_site 15 72320073 G A 40 65 BRCA TCGA-E9-A1NA BTBD1 SNP Missense_Mutation 15 83686848 G T 48 100 BRCA TCGA-E9-A1NA ACSM5 SNP Silent 16 20422836 C A 30 43 BRCA TCGA-E9-A1NA ACD SNP Missense_Mutation 16 67694153 G C 43 44 BRCA TCGA-E9-A1NA AP1G1 SNP Missense_Mutation 16 71805063 G T 44 68 BRCA TCGA-E9-A1NA DHRS13 SNP Missense_Mutation 17 27228573 C G 23 59 BRCA TCGA-E9-A1NA SLC39A6 SNP Missense_Mutation 18 33691125 C A 30 97 BRCA TCGA-E9-A1NA LAMA1 SNP Silent 18 6993719 C A 29 52 BRCA TCGA-E9-A1NA TSHZ1 SNP Missense_Mutation 18 72998785 C G 21 64 BRCA TCGA-E9-A1NA ZSWIM4 SNP Missense_Mutation 19 13934173 G A 41 89 BRCA TCGA-E9-A1NA DAZAP1 SNP Nonsense_Mutation 19 1432662 C T 29 83 BRCA TCGA-E9-A1NA SLC5A5 SNP Missense_Mutation 19 18004631 G T 47 55 BRCA TCGA-E9-A1NA ZNF829 SNP Splice_site 19 37398926 C G 30 62 BRCA TCGA-E9-A1NA RAX2 SNP Missense_Mutation 19 3771698 C T 22 47 BRCA TCGA-E9-A1NA TSKS SNP Missense_Mutation 19 50266424 G C 34 52 BRCA TCGA-E9-A1NA POLD1 SNP Missense_Mutation 19 50905959 C T 27 66 BRCA TCGA-E9-A1NA NLRP4 SNP Silent 19 56372911 T G 63 36 BRCA TCGA-E9-A1NA LRP1B SNP Missense_Mutation 2 141597642 C A 30 100 BRCA TCGA-E9-A1NA FAM49A SNP Missense_Mutation 2 16740738 G C 41 98 BRCA TCGA-E9-A1NA PDE11A SNP Missense_Mutation 2 178681608 A G 4 91 BRCA TCGA-E9-A1NA PRKD3 SNP Silent 2 37501751 G T 45 69 BRCA TCGA-E9-A1NA PDYN SNP Missense_Mutation 20 1961172 C G 32 77 BRCA TCGA-E9-A1NA NOP56 SNP Silent 20 2636061 A G 9 48 BRCA TCGA-E9-A1NA LRCH2 SNP Missense_Mutation 23 114357648 G A 37 79 BRCA TCGA-E9-A1NA GRIA3 SNP Missense_Mutation 23 122387187 T C 50 89 BRCA TCGA-E9-A1NA IGSF1 SNP Missense_Mutation 23 130410058 C T 28 75 BRCA TCGA-E9-A1NA GPR112 INS Frame_Shift_Ins 23 135441470 - T 8 49 BRCA TCGA-E9-A1NA MAGEC1 SNP Silent 23 140995860 C A 24 48 BRCA TCGA-E9-A1NA MXRA5 SNP Silent 23 3241188 A C 11 47 BRCA TCGA-E9-A1NA NFKBIZ INS Frame_Shift_Ins 3 101572147 - G 11 54 BRCA TCGA-E9-A1NA NFKBIZ SNP Splice_site 3 101573907 G T 36 82 BRCA TCGA-E9-A1NA TF SNP Missense_Mutation 3 133473400 C A 18 44 BRCA TCGA-E9-A1NA ZBTB38 SNP Silent 3 141162010 G A 37 43 BRCA TCGA-E9-A1NA ETV5 SNP Missense_Mutation 3 185774898 C T 31 99 BRCA TCGA-E9-A1NA CLDN16 SNP Nonsense_Mutation 3 190105967 C G 29 49 BRCA TCGA-E9-A1NA BDH1 SNP Missense_Mutation 3 197249622 C T 30 92 BRCA TCGA-E9-A1NA IFRD2 SNP Missense_Mutation 3 50326248 C T 19 94 BRCA TCGA-E9-A1NA FREM3 SNP Missense_Mutation 4 144618543 C T 29 60 BRCA TCGA-E9-A1NA SH3D19 SNP Missense_Mutation 4 152043323 C A 29 68 BRCA TCGA-E9-A1NA TDO2 SNP Missense_Mutation 4 156825222 A G 2 55 BRCA TCGA-E9-A1NA SNX25 SNP Missense_Mutation 4 186274707 G T 47 62 BRCA TCGA-E9-A1NA PCDHAC1 SNP Missense_Mutation 5 140307514 C T 31 52 BRCA TCGA-E9-A1NA DPYSL3 SNP Missense_Mutation 5 146785290 C T 30 100 BRCA TCGA-E9-A1NA C6 SNP Missense_Mutation 5 41200004 C A 32 68 BRCA TCGA-E9-A1NA IQGAP2 SNP Missense_Mutation 5 75757398 T A 52 86 BRCA TCGA-E9-A1NA ARSB SNP Missense_Mutation 5 78181490 C A 26 99 BRCA TCGA-E9-A1NA XRCC4 SNP Missense_Mutation 5 82500683 G A 45 58 BRCA TCGA-E9-A1NA CCNH SNP Nonsense_Mutation 5 86695302 T A 62 77 BRCA TCGA-E9-A1NA RAET1G SNP Silent 6 150239333 C G 29 27 BRCA TCGA-E9-A1NA ITPR3 SNP Silent 6 33647763 C T 17 84 BRCA TCGA-E9-A1NA SLC22A7 SNP Silent 6 43269378 C T 24 53 BRCA TCGA-E9-A1NA IQUB SNP Missense_Mutation 7 123150084 C G 20 49 BRCA TCGA-E9-A1NA MGAM SNP Silent 7 141786092 C T 29 57 BRCA TCGA-E9-A1NA DNAH11 SNP Missense_Mutation 7 21920374 C T 32 67 BRCA TCGA-E9-A1NA SDK1 SNP Missense_Mutation 7 4153064 G A 38 82 BRCA TCGA-E9-A1NA HECW1 SNP Missense_Mutation 7 43546786 G C 45 100 BRCA TCGA-E9-A1NA OC90 SNP Silent 8 133058114 G A 48 56 BRCA TCGA-E9-A1NA PHF20L1 SNP Silent 8 133849986 C T 27 45 BRCA TCGA-E9-A1NA OSR2 SNP Missense_Mutation 8 99961516 C G 18 60 BRCA TCGA-E9-A1NA GRIN3A SNP Silent 9 104375772 G A 39 53 BRCA TCGA-E9-A1NA MED22 SNP Missense_Mutation 9 136212104 C G 29 88 BRCA TCGA-E9-A1NA ASPN SNP Missense_Mutation 9 95227293 A T 3 89 BRCA TCGA-E9-A1NC ADCY10 SNP Missense_Mutation 1 167830215 T G 58 57 BRCA TCGA-E9-A1NC DNM3 SNP Silent 1 172356293 C T 23 21 BRCA TCGA-E9-A1NC PKP1 SNP Missense_Mutation 1 201291149 G A 38 78 BRCA TCGA-E9-A1NC ECE1 SNP Missense_Mutation 1 21551856 C T 31 80 BRCA TCGA-E9-A1NC DFFB INS Frame_Shift_Ins 1 3775374 - T 47 43 BRCA TCGA-E9-A1NC DPH2 SNP Nonsense_Mutation 1 44435938 G T 39 59 BRCA TCGA-E9-A1NC GBP7 SNP Missense_Mutation 1 89630532 A T 7 75 BRCA TCGA-E9-A1NC EPC1 SNP Missense_Mutation 10 32576120 G T 43 99 BRCA TCGA-E9-A1NC USP54 SNP Silent 10 75290088 G T 43 55 BRCA TCGA-E9-A1NC MYOF SNP Silent 10 95093659 C G 30 46 BRCA TCGA-E9-A1NC OR10G4 SNP Missense_Mutation 11 123886720 A G 6 56 BRCA TCGA-E9-A1NC BRSK2 INS Frame_Shift_Ins 11 1477639 - G 19 80 BRCA TCGA-E9-A1NC OR5M1 SNP Missense_Mutation 11 56380428 A G 3 65 BRCA TCGA-E9-A1NC OR56A1 SNP Silent 11 6048395 G A 45 56 BRCA TCGA-E9-A1NC KIAA1731 INS Frame_Shift_Ins 11 93433116 - C 34 47 BRCA TCGA-E9-A1NC GPR83 SNP Missense_Mutation 11 94113625 C T 27 50 BRCA TCGA-E9-A1NC KLRC1 SNP Splice_site 12 10603569 C A 24 59 BRCA TCGA-E9-A1NC METTL20 SNP Missense_Mutation 12 31820847 G A 33 72 BRCA TCGA-E9-A1NC PDZRN4 SNP Missense_Mutation 12 41967163 C A 32 100 BRCA TCGA-E9-A1NC LRP1 SNP Missense_Mutation 12 57574482 G A 41 96 BRCA TCGA-E9-A1NC KIF5A SNP Silent 12 57975304 C T 18 66 BRCA TCGA-E9-A1NC BBS10 SNP Missense_Mutation 12 76740486 C G 32 57 BRCA TCGA-E9-A1NC KERA SNP Silent 12 91445255 C T 25 64 BRCA TCGA-E9-A1NC NOVA1 SNP Missense_Mutation 14 26917796 G T 46 85 BRCA TCGA-E9-A1NC DAAM1 SNP Missense_Mutation 14 59730208 A C 1 90 BRCA TCGA-E9-A1NC RPS6KA5 SNP Missense_Mutation 14 91338524 G C 33 97 BRCA TCGA-E9-A1NC PAK6 INS Frame_Shift_Ins 15 40566446 - C 34 62 BRCA TCGA-E9-A1NC TYRO3 SNP Splice_Site 15 41862356 T C 57 86 BRCA TCGA-E9-A1NC DUOX2 SNP Missense_Mutation 15 45387138 A C 8 91 BRCA TCGA-E9-A1NC DMXL2 SNP Missense_Mutation 15 51791403 G T 36 71 BRCA TCGA-E9-A1NC GOLGA6A DEL In_Frame_Del 15 74364612 CCT - 26 52 BRCA TCGA-E9-A1NC C15orf39 INS Frame_Shift_Ins 15 75499803 - C 14 62 BRCA TCGA-E9-A1NC SHISA9 SNP Missense_Mutation 16 13329129 C T 27 78 BRCA TCGA-E9-A1NC NUP93 SNP Missense_Mutation 16 56782199 G A 45 100 BRCA TCGA-E9-A1NC FBXW10 SNP Missense_Mutation 17 18675985 A G 3 43 BRCA TCGA-E9-A1NC C17orf47 SNP Silent 17 56620396 G A 48 54 BRCA TCGA-E9-A1NC MED13 SNP Missense_Mutation 17 60023924 T C 60 87 BRCA TCGA-E9-A1NC TYK2 INS Frame_Shift_Ins 19 10463112 - G 59 49 BRCA TCGA-E9-A1NC LPHN1 SNP Splice_site 19 14263249 C G 18 77 BRCA TCGA-E9-A1NC SAE1 SNP Missense_Mutation 19 47673103 C T 26 89 BRCA TCGA-E9-A1NC SIGLEC7 SNP Silent 19 51647820 C A 22 40 BRCA TCGA-E9-A1NC CNTNAP5 SNP Silent 2 125671838 C T 27 55 BRCA TCGA-E9-A1NC SAP130 SNP Missense_Mutation 2 128712831 C A 28 68 BRCA TCGA-E9-A1NC ZSWIM2 SNP Missense_Mutation 2 187702201 A G 5 82 BRCA TCGA-E9-A1NC TRIP12 SNP Missense_Mutation 2 230679028 T A 55 93 BRCA TCGA-E9-A1NC HDAC4 SNP Silent 2 240066378 G A 34 82 BRCA TCGA-E9-A1NC OXER1 INS Frame_Shift_Ins 2 42990217 - C 42 65 BRCA TCGA-E9-A1NC GPR75 SNP Missense_Mutation 2 54081037 C T 19 68 BRCA TCGA-E9-A1NC C2orf65 SNP Missense_Mutation 2 74802647 C T 32 57 BRCA TCGA-E9-A1NC C21orf58 INS Frame_Shift_Ins 21 47734733 - AT 42 61 BRCA TCGA-E9-A1NC ATG4A SNP Missense_Mutation 23 107374543 C G 17 97 BRCA TCGA-E9-A1NC GATA1 SNP Missense_Mutation 23 48652249 G A 38 75 BRCA TCGA-E9-A1NC MAGED2 SNP Silent 23 54836184 G T 37 43 BRCA TCGA-E9-A1NC COLQ INS Frame_Shift_Ins 3 15518687 - G 55 48 BRCA TCGA-E9-A1NC BCHE SNP Missense_Mutation 3 165548505 C A 30 100 BRCA TCGA-E9-A1NC C3orf32 SNP Missense_Mutation 3 8672537 T G 55 73 BRCA TCGA-E9-A1NC GALNT7 SNP Missense_Mutation 4 174169248 T A 56 63 BRCA TCGA-E9-A1NC SIL1 DEL Frame_Shift_Del 5 138282853 GG - 47 52 BRCA TCGA-E9-A1NC SIL1 INS Frame_Shift_Ins 5 138282858 - G 57 79 BRCA TCGA-E9-A1NC PLN SNP Missense_Mutation 6 118880141 A C 1 54 BRCA TCGA-E9-A1NC MUC17 SNP Missense_Mutation 7 100684923 C T 19 29 BRCA TCGA-E9-A1NC PRSS58 DEL Frame_Shift_Del 7 141955075 AGATGCTTTTCATT - 7 54 BRCA TCGA-E9-A1NC SUN1 SNP Missense_Mutation 7 891092 G T 42 53 BRCA TCGA-E9-A1NC FAM135B INS Frame_Shift_Ins 8 139164094 - C 44 72 BRCA TCGA-E9-A1NC TEX15 SNP Missense_Mutation 8 30705420 G C 45 48 BRCA TCGA-E9-A1NC PRDM14 SNP Missense_Mutation 8 70964468 C G 20 58 BRCA TCGA-E9-A1NC OTUD6B SNP Missense_Mutation 8 92082559 C T 26 41 BRCA TCGA-E9-A1ND CHD1L SNP Missense_Mutation 1 146758174 G C 40 64 BRCA TCGA-E9-A1ND DARS2 SNP Missense_Mutation 1 173826805 T A 54 53 BRCA TCGA-E9-A1ND TNN SNP Missense_Mutation 1 175052955 A C 2 89 BRCA TCGA-E9-A1ND KCNT2 SNP Missense_Mutation 1 196251440 C A 30 98 BRCA TCGA-E9-A1ND RYR2 SNP Silent 1 237948029 G A 35 87 BRCA TCGA-E9-A1ND TRIT1 SNP Missense_Mutation 1 40307439 G C 45 49 BRCA TCGA-E9-A1ND OMA1 SNP Missense_Mutation 1 58999654 C T 29 93 BRCA TCGA-E9-A1ND CHST15 SNP Missense_Mutation 10 125771954 A T 7 90 BRCA TCGA-E9-A1ND PGR SNP Missense_Mutation 11 100922227 C A 18 70 BRCA TCGA-E9-A1ND MUC5B SNP Missense_Mutation 11 1266156 G C 33 56 BRCA TCGA-E9-A1ND SPPL3 SNP Missense_Mutation 12 121222339 G C 33 100 BRCA TCGA-E9-A1ND LYRM5 DEL Frame_Shift_Del 12 25356905 TTCT - 52 56 BRCA TCGA-E9-A1ND PKP2 SNP Missense_Mutation 12 32949226 T C 62 67 BRCA TCGA-E9-A1ND ATF1 SNP Missense_Mutation 12 51207889 C T 20 64 BRCA TCGA-E9-A1ND ZFC3H1 SNP Silent 12 72009006 A C 3 51 BRCA TCGA-E9-A1ND A2M SNP Silent 12 9242989 C T 26 49 BRCA TCGA-E9-A1ND DIAPH3 SNP Silent 13 60407364 C T 31 44 BRCA TCGA-E9-A1ND CATSPERB SNP Silent 14 92047329 C T 19 39 BRCA TCGA-E9-A1ND AGBL1 SNP Missense_Mutation 15 86940618 T C 50 91 BRCA TCGA-E9-A1ND LONP2 SNP Missense_Mutation 16 48304031 A G 5 78 BRCA TCGA-E9-A1ND MT1M SNP Missense_Mutation 16 56666647 G A 41 65 BRCA TCGA-E9-A1ND ST3GAL2 SNP Missense_Mutation 16 70432295 G A 39 61 BRCA TCGA-E9-A1ND FBXW10 SNP Missense_Mutation 17 18670066 G C 33 63 BRCA TCGA-E9-A1ND SLC25A11 SNP Missense_Mutation 17 4841331 T C 57 84 BRCA TCGA-E9-A1ND KCNJ2 SNP Missense_Mutation 17 68171571 G A 42 87 BRCA TCGA-E9-A1ND TP53 SNP Missense_Mutation 17 7578190 T C 49 88 BRCA TCGA-E9-A1ND RPTOR SNP Silent 17 78897383 G A 39 32 BRCA TCGA-E9-A1ND RPRD1A SNP Missense_Mutation 18 33606996 G A 38 96 BRCA TCGA-E9-A1ND CELF4 SNP Silent 18 35145386 G A 33 70 BRCA TCGA-E9-A1ND MYO5B SNP Missense_Mutation 18 47518741 G T 47 68 BRCA TCGA-E9-A1ND ADCK4 SNP Silent 19 41209450 G A 39 11 BRCA TCGA-E9-A1ND ZNF274 SNP Missense_Mutation 19 58698334 G C 33 53 BRCA TCGA-E9-A1ND ZNF121 SNP Missense_Mutation 19 9677328 C T 32 49 BRCA TCGA-E9-A1ND COBLL1 SNP Silent 2 165561493 C T 27 55 BRCA TCGA-E9-A1ND ZNF804A SNP Silent 2 185803708 G T 46 59 BRCA TCGA-E9-A1ND PMS1 SNP Nonsense_Mutation 2 190682787 A T 3 60 BRCA TCGA-E9-A1ND TRIP12 INS Frame_Shift_Ins 2 230661314 - A 33 81 BRCA TCGA-E9-A1ND DGKD SNP Silent 2 234359581 G A 40 7 BRCA TCGA-E9-A1ND SEC23B SNP Missense_Mutation 20 18507143 G C 33 98 BRCA TCGA-E9-A1ND STK35 SNP Missense_Mutation 20 2097914 T G 58 75 BRCA TCGA-E9-A1ND DEFB129 SNP Missense_Mutation 20 210186 G A 34 38 BRCA TCGA-E9-A1ND SEMG2 SNP Missense_Mutation 20 43851246 A C 5 57 BRCA TCGA-E9-A1ND ZNF335 SNP Missense_Mutation 20 44598176 A G 6 64 BRCA TCGA-E9-A1ND LRCH2 SNP Missense_Mutation 23 114414224 G T 45 78 BRCA TCGA-E9-A1ND L1CAM SNP Silent 23 153129922 A G 6 48 BRCA TCGA-E9-A1ND IL1RAPL1 SNP Missense_Mutation 23 29301321 G A 38 71 BRCA TCGA-E9-A1ND AKAP4 SNP Missense_Mutation 23 49957994 T A 50 68 BRCA TCGA-E9-A1ND OPHN1 SNP Missense_Mutation 23 67417078 A G 9 71 BRCA TCGA-E9-A1ND HHLA2 SNP Missense_Mutation 3 108094632 G T 45 41 BRCA TCGA-E9-A1ND SEMA5B SNP Silent 3 122630348 G A 39 52 BRCA TCGA-E9-A1ND GOLIM4 SNP Missense_Mutation 3 167750551 C G 24 47 BRCA TCGA-E9-A1ND NGLY1 SNP Silent 3 25792650 C T 23 51 BRCA TCGA-E9-A1ND PDCD6IP SNP Silent 3 33905540 A G 5 44 BRCA TCGA-E9-A1ND WDR17 SNP Missense_Mutation 4 177072997 C G 32 83 BRCA TCGA-E9-A1ND UBA6 SNP Missense_Mutation 4 68494810 C G 24 52 BRCA TCGA-E9-A1ND BET3L SNP Missense_Mutation 6 116861558 T C 53 71 BRCA TCGA-E9-A1ND CD109 SNP Splice_site 6 74466405 G A 47 63 BRCA TCGA-E9-A1ND MUC17 SNP Missense_Mutation 7 100681604 C A 30 52 BRCA TCGA-E9-A1ND RELN SNP Missense_Mutation 7 103214716 G A 43 95 BRCA TCGA-E9-A1ND CHRM2 SNP Missense_Mutation 7 136700646 A G 11 79 BRCA TCGA-E9-A1ND POM121 SNP Missense_Mutation 7 72418986 T A 62 48 BRCA TCGA-E9-A1ND PCLO SNP Silent 7 82784526 T C 63 50 BRCA TCGA-E9-A1ND TRRAP SNP Missense_Mutation 7 98528347 T C 59 92 BRCA TCGA-E9-A1ND ZKSCAN1 SNP Missense_Mutation 7 99631435 A G 2 53 BRCA TCGA-E9-A1ND GRINA SNP Missense_Mutation 8 145066211 T G 56 63 BRCA TCGA-E9-A1ND KIAA1967 SNP Missense_Mutation 8 22470552 C T 19 82 BRCA TCGA-E9-A1NE SLC16A4 SNP Missense_Mutation 1 110921957 G C 34 56 BRCA TCGA-E9-A1NE CAMK1G SNP Missense_Mutation 1 209784824 C G 17 96 BRCA TCGA-E9-A1NE SYT14 SNP Missense_Mutation 1 210273640 T C 60 78 BRCA TCGA-E9-A1NE NUP133 SNP Missense_Mutation 1 229633915 A G 1 49 BRCA TCGA-E9-A1NE ZNF684 SNP Missense_Mutation 1 41012838 G T 44 46 BRCA TCGA-E9-A1NE CELF2 SNP Missense_Mutation 10 11330504 T A 54 86 BRCA TCGA-E9-A1NE UPF2 SNP Missense_Mutation 10 12077114 C A 32 66 BRCA TCGA-E9-A1NE NAP1L4 SNP Splice_Site 11 2975878 T A 55 89 BRCA TCGA-E9-A1NE FERMT3 SNP Missense_Mutation 11 63979191 A C 14 71 BRCA TCGA-E9-A1NE ATG2A SNP Silent 11 64674264 C T 24 55 BRCA TCGA-E9-A1NE ATG2A SNP Splice_Site 11 64674996 C G 18 88 BRCA TCGA-E9-A1NE KCNA5 SNP Missense_Mutation 12 5155008 G C 35 49 BRCA TCGA-E9-A1NE DACT1 SNP Missense_Mutation 14 59112414 C T 21 73 BRCA TCGA-E9-A1NE DUOXA2 SNP Silent 15 45406842 G A 34 52 BRCA TCGA-E9-A1NE KIF7 SNP Missense_Mutation 15 90173555 G A 45 100 BRCA TCGA-E9-A1NE FAM171A2 SNP Missense_Mutation 17 42433630 G C 43 95 BRCA TCGA-E9-A1NE CLEC10A SNP Splice_Site 17 6980307 C A 32 65 BRCA TCGA-E9-A1NE KIAA1468 SNP Missense_Mutation 18 59888293 G T 34 100 BRCA TCGA-E9-A1NE PTPRH SNP Missense_Mutation 19 55708703 G C 43 55 BRCA TCGA-E9-A1NE MSTN SNP Missense_Mutation 2 190924879 G A 35 100 BRCA TCGA-E9-A1NE KCNB1 SNP Missense_Mutation 20 48098719 C T 27 100 BRCA TCGA-E9-A1NE YPEL1 SNP Missense_Mutation 22 22064966 C T 17 99 BRCA TCGA-E9-A1NE EFCAB6 SNP Splice_site 22 44079628 G C 36 48 BRCA TCGA-E9-A1NE TRPC5 SNP Missense_Mutation 23 111024400 T A 51 86 BRCA TCGA-E9-A1NE DCHS2 SNP Silent 4 155241643 G C 35 49 BRCA TCGA-E9-A1NE STAP1 SNP Missense_Mutation 4 68424566 G C 41 54 BRCA TCGA-E9-A1NE ATP10B SNP Missense_Mutation 5 160034008 C T 30 58 BRCA TCGA-E9-A1NE ZNF354C SNP Missense_Mutation 5 178505799 T G 61 51 BRCA TCGA-E9-A1NE ZNF366 SNP Missense_Mutation 5 71756905 C T 27 75 BRCA TCGA-E9-A1NE SNX10 SNP Missense_Mutation 7 26412143 A G 10 68 BRCA TCGA-E9-A1NE TLE1 SNP Missense_Mutation 9 84202727 T C 59 93 BRCA TCGA-E9-A1NF GPATCH4 INS In_Frame_Ins 1 156568029 - CCA 62 83 BRCA TCGA-E9-A1NF CD1B SNP Missense_Mutation 1 158298045 G A 45 59 BRCA TCGA-E9-A1NF ATP1B1 SNP Missense_Mutation 1 169094132 G T 33 54 BRCA TCGA-E9-A1NF ARHGEF10L SNP Missense_Mutation 1 17975064 C G 21 86 BRCA TCGA-E9-A1NF NUP133 SNP Missense_Mutation 1 229622242 C G 18 76 BRCA TCGA-E9-A1NF PCNXL2 SNP Splice_Site 1 233353644 C T 19 98 BRCA TCGA-E9-A1NF FMN2 SNP Missense_Mutation 1 240370352 C T 30 86 BRCA TCGA-E9-A1NF FMN2 SNP Missense_Mutation 1 240370552 C T 30 51 BRCA TCGA-E9-A1NF EFCAB7 SNP Missense_Mutation 1 63999242 G A 45 72 BRCA TCGA-E9-A1NF EFCAB7 SNP Missense_Mutation 1 64011686 G C 44 63 BRCA TCGA-E9-A1NF HPSE2 INS Frame_Shift_Ins 10 100219345 - G 7 88 BRCA TCGA-E9-A1NF RECQL SNP Missense_Mutation 12 21630747 A T 15 90 BRCA TCGA-E9-A1NF LIG4 SNP Missense_Mutation 13 108862458 C T 29 85 BRCA TCGA-E9-A1NF NUMB SNP Missense_Mutation 14 73753872 T A 59 92 BRCA TCGA-E9-A1NF VPS13C SNP Missense_Mutation 15 62277090 G C 45 65 BRCA TCGA-E9-A1NF TSPAN3 SNP Missense_Mutation 15 77346562 G T 44 63 BRCA TCGA-E9-A1NF SALL1 SNP Missense_Mutation 16 51174727 C T 19 99 BRCA TCGA-E9-A1NF NCOR1 INS Frame_Shift_Ins 17 16029456 - T 48 77 BRCA TCGA-E9-A1NF TP53 SNP Missense_Mutation 17 7579349 A C 9 71 BRCA TCGA-E9-A1NF COL5A3 SNP Missense_Mutation 19 10097049 G A 39 48 BRCA TCGA-E9-A1NF CALR3 SNP Missense_Mutation 19 16606648 C T 31 98 BRCA TCGA-E9-A1NF TMPRSS9 SNP Missense_Mutation 19 2416579 C T 24 76 BRCA TCGA-E9-A1NF TPRX1 SNP Missense_Mutation 19 48305666 A C 10 33 BRCA TCGA-E9-A1NF TMEM143 SNP Missense_Mutation 19 48836505 G T 46 67 BRCA TCGA-E9-A1NF MED25 SNP Silent 19 50335258 C T 19 44 BRCA TCGA-E9-A1NF MYH14 SNP Missense_Mutation 19 50735219 C T 23 76 BRCA TCGA-E9-A1NF RANBP2 SNP Missense_Mutation 2 109347330 G A 45 91 BRCA TCGA-E9-A1NF BCL2L11 SNP Silent 2 111881520 A C 6 51 BRCA TCGA-E9-A1NF EPB41L5 SNP Silent 2 120903830 T C 49 57 BRCA TCGA-E9-A1NF GTDC1 SNP Missense_Mutation 2 144710400 C T 17 92 BRCA TCGA-E9-A1NF FASTKD2 SNP Missense_Mutation 2 207638973 G A 45 75 BRCA TCGA-E9-A1NF CRYGC SNP Missense_Mutation 2 208994365 C T 31 66 BRCA TCGA-E9-A1NF SPRED2 SNP Silent 2 65571979 G T 47 72 BRCA TCGA-E9-A1NF STK35 SNP Silent 20 2097463 T C 63 51 BRCA TCGA-E9-A1NF NCOA6 SNP Missense_Mutation 20 33370003 G C 45 60 BRCA TCGA-E9-A1NF C20orf111 SNP Splice_Site 20 42831600 C A 18 85 BRCA TCGA-E9-A1NF SLCO2A1 SNP Missense_Mutation 3 133664056 G A 34 75 BRCA TCGA-E9-A1NF MASP1 SNP Silent 3 186970996 C T 23 3 BRCA TCGA-E9-A1NF CEP19 SNP Missense_Mutation 3 196434456 C A 17 96 BRCA TCGA-E9-A1NF GCNT4 SNP Missense_Mutation 5 74325091 G A 43 58 BRCA TCGA-E9-A1NF VCAN SNP Nonsense_Mutation 5 82834037 G T 45 53 BRCA TCGA-E9-A1NF ATG5 SNP Missense_Mutation 6 106649944 G A 45 60 BRCA TCGA-E9-A1NF ADGB SNP Silent 6 147049874 C A 29 61 BRCA TCGA-E9-A1NF FAM217A SNP Missense_Mutation 6 4069649 C T 29 64 BRCA TCGA-E9-A1NF PLA2G7 SNP Missense_Mutation 6 46672386 C T 29 73 BRCA TCGA-E9-A1NF PLA2G7 SNP Silent 6 46678354 C T 29 52 BRCA TCGA-E9-A1NF DST DEL Frame_Shift_Del 6 56422155 CAATTGACAAGGGCCCAAG - 29 100 BRCA TCGA-E9-A1NF RAB19 SNP Missense_Mutation 7 140107556 T G 62 91 BRCA TCGA-E9-A1NG SPTA1 SNP Splice_site 1 158584095 C A 30 71 BRCA TCGA-E9-A1NG PTPRF SNP Silent 1 44063714 C T 23 48 BRCA TCGA-E9-A1NG USP24 SNP Missense_Mutation 1 55637338 T C 50 88 BRCA TCGA-E9-A1NG SLC44A3 SNP Silent 1 95311008 C T 24 68 BRCA TCGA-E9-A1NG SETD1B SNP Missense_Mutation 12 122242717 G A 35 60 BRCA TCGA-E9-A1NG KRAS SNP Missense_Mutation 12 25398284 C A 18 99 BRCA TCGA-E9-A1NG CHD4 SNP Missense_Mutation 12 6697097 G A 39 88 BRCA TCGA-E9-A1NG MPG SNP Missense_Mutation 16 129659 A C 10 83 BRCA TCGA-E9-A1NG KIAA0182 SNP Missense_Mutation 16 85701854 A G 4 69 BRCA TCGA-E9-A1NG EFCAB5 SNP Silent 17 28417634 G A 47 50 BRCA TCGA-E9-A1NG SLFN11 SNP Missense_Mutation 17 33679962 T G 58 68 BRCA TCGA-E9-A1NG ACE SNP Missense_Mutation 17 61562349 A G 10 52 BRCA TCGA-E9-A1NG ITGB6 SNP Missense_Mutation 2 160980373 G A 46 75 BRCA TCGA-E9-A1NG CSRNP3 SNP Missense_Mutation 2 166535936 C A 31 45 BRCA TCGA-E9-A1NG ACTR1B DEL Splice_Site 2 98276015 CCTCACCTGCCCTGACCAGAA - 22 59 BRCA TCGA-E9-A1NG CEP250 SNP Nonsense_Mutation 20 34057761 G T 45 82 BRCA TCGA-E9-A1NG HEPH SNP Missense_Mutation 23 65420445 C T 26 77 BRCA TCGA-E9-A1NG CCDC80 SNP Missense_Mutation 3 112358410 G A 38 54 BRCA TCGA-E9-A1NG PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-E9-A1NG CNTNAP2 SNP Silent 7 146536957 G T 41 48 BRCA TCGA-E9-A1NG KIF13B SNP Missense_Mutation 8 28989832 G A 37 65 BRCA TCGA-E9-A1NG MAN1B1 SNP Missense_Mutation 9 139996024 A C 6 70 BRCA TCGA-E9-A1NH CR1 SNP Missense_Mutation 1 207679281 G T 46 58 BRCA TCGA-E9-A1NH EFCAB2 INS Frame_Shift_Ins 1 245133623 - CCTCC 54 49 BRCA TCGA-E9-A1NH C1orf146 SNP Silent 1 92709922 G C 45 50 BRCA TCGA-E9-A1NH GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-E9-A1NH CSTF3 SNP Missense_Mutation 11 33129459 G A 44 79 BRCA TCGA-E9-A1NH LPXN SNP Missense_Mutation 11 58345513 T C 57 37 BRCA TCGA-E9-A1NH PRDM4 SNP Missense_Mutation 12 108137052 T C 59 91 BRCA TCGA-E9-A1NH TMEM132B SNP Missense_Mutation 12 125834300 A G 9 78 BRCA TCGA-E9-A1NH SMARCD1 SNP Missense_Mutation 12 50480656 A G 8 91 BRCA TCGA-E9-A1NH PCCA SNP Silent 13 101167710 C T 23 37 BRCA TCGA-E9-A1NH ABHD13 SNP Missense_Mutation 13 108882113 G A 45 100 BRCA TCGA-E9-A1NH DHRS2 SNP Missense_Mutation 14 24114451 A G 6 49 BRCA TCGA-E9-A1NH CBFB SNP Missense_Mutation 16 67070564 A G 4 85 BRCA TCGA-E9-A1NH CDK12 SNP Missense_Mutation 17 37672031 A G 4 81 BRCA TCGA-E9-A1NH ZNF235 SNP Silent 19 44792859 T C 56 52 BRCA TCGA-E9-A1NH PLIN4 SNP Silent 19 4512292 C T 21 36 BRCA TCGA-E9-A1NH KIR2DS4 SNP Silent 19 55344245 C T 27 49 BRCA TCGA-E9-A1NH A1BG SNP Missense_Mutation 19 58864366 G A 39 64 BRCA TCGA-E9-A1NH ZC3H6 SNP Missense_Mutation 2 113088873 G A 36 72 BRCA TCGA-E9-A1NH SLC30A6 SNP Missense_Mutation 2 32445456 T G 62 49 BRCA TCGA-E9-A1NH WAS SNP Nonsense_Mutation 23 48545241 C T 19 51 BRCA TCGA-E9-A1NH PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E9-A1NH IL7R SNP Missense_Mutation 5 35873588 A T 9 63 BRCA TCGA-E9-A1NH DNAH8 SNP Silent 6 38759340 T C 56 51 BRCA TCGA-E9-A1NH ITGB8 SNP Silent 7 20418798 C T 19 61 BRCA TCGA-E9-A1NH PAPPA SNP Nonsense_Mutation 9 119097220 C T 21 81 BRCA TCGA-E9-A1NH DBC1 SNP Silent 9 121929686 G A 40 47 BRCA TCGA-E9-A1NH TLN1 SNP Silent 9 35724267 C T 25 52 BRCA TCGA-E9-A1NI PRPF38B INS Frame_Shift_Ins 1 109241968 - G 23 81 BRCA TCGA-E9-A1NI GPSM2 INS Frame_Shift_Ins 1 109466642 - C 50 70 BRCA TCGA-E9-A1NI FAM40A INS Frame_Shift_Ins 1 110585774 - C 54 92 BRCA TCGA-E9-A1NI C2CD4D INS Frame_Shift_Ins 1 151810572 - G 23 32 BRCA TCGA-E9-A1NI SELP SNP Missense_Mutation 1 169564091 A G 2 50 BRCA TCGA-E9-A1NI DHX9 SNP Missense_Mutation 1 182811768 A G 4 75 BRCA TCGA-E9-A1NI NBL1 INS Frame_Shift_Ins 1 19981543 - G 59 82 BRCA TCGA-E9-A1NI IGFN1 INS Frame_Shift_Ins 1 201174401 - G 11 60 BRCA TCGA-E9-A1NI BARHL2 INS Frame_Shift_Ins 1 91182376 - G 55 52 BRCA TCGA-E9-A1NI PIK3CD INS Frame_Shift_Ins 1 9777113 - CC 46 48 BRCA TCGA-E9-A1NI HPS1 INS Frame_Shift_Ins 10 100189562 - C 54 56 BRCA TCGA-E9-A1NI KAZALD1 SNP Missense_Mutation 10 102824102 C G 22 99 BRCA TCGA-E9-A1NI ERCC6 INS Frame_Shift_Ins 10 50690757 - C 50 45 BRCA TCGA-E9-A1NI GATA3 INS Frame_Shift_Ins 10 8111496 - GGAG 55 91 BRCA TCGA-E9-A1NI MUC2 SNP Missense_Mutation 11 1092971 C T 17 52 BRCA TCGA-E9-A1NI IGSF9B INS Frame_Shift_Ins 11 133815978 - G 27 38 BRCA TCGA-E9-A1NI ART5 INS Frame_Shift_Ins 11 3660979 - G 51 68 BRCA TCGA-E9-A1NI MYBPC3 SNP Missense_Mutation 11 47368187 C T 23 75 BRCA TCGA-E9-A1NI LRRC56 INS Frame_Shift_Ins 11 551227 - CC 42 53 BRCA TCGA-E9-A1NI FOXM1 INS Frame_Shift_Ins 12 2968087 - G 3 72 BRCA TCGA-E9-A1NI ATP7B SNP Silent 13 52511651 C T 23 34 BRCA TCGA-E9-A1NI RPL10L SNP Missense_Mutation 14 47120828 T C 53 60 BRCA TCGA-E9-A1NI HN1L SNP Missense_Mutation 16 1735531 A G 13 77 BRCA TCGA-E9-A1NI MAP2K4 INS Frame_Shift_Ins 17 11984789 - T 28 98 BRCA TCGA-E9-A1NI RNMTL1 SNP Missense_Mutation 17 694866 G A 40 50 BRCA TCGA-E9-A1NI POLR2A INS Frame_Shift_Ins 17 7388097 - C 42 78 BRCA TCGA-E9-A1NI ILF3 INS Frame_Shift_Ins 19 10794365 - C 6 45 BRCA TCGA-E9-A1NI PALM3 SNP Missense_Mutation 19 14167592 G T 34 62 BRCA TCGA-E9-A1NI ROCK2 SNP Nonsense_Mutation 2 11355160 A T 13 87 BRCA TCGA-E9-A1NI ASIC4 INS Frame_Shift_Ins 2 220402687 - G 59 47 BRCA TCGA-E9-A1NI COL4A4 SNP Missense_Mutation 2 227896715 G A 41 65 BRCA TCGA-E9-A1NI PUS10 SNP Silent 2 61238927 A G 9 50 BRCA TCGA-E9-A1NI FAM178B INS Frame_Shift_Ins 2 97636500 - C 34 57 BRCA TCGA-E9-A1NI ZBED1 SNP Missense_Mutation 23 2408674 G T 37 46 BRCA TCGA-E9-A1NI KIAA2022 SNP Silent 23 73963324 C T 28 52 BRCA TCGA-E9-A1NI PCDH19 SNP Missense_Mutation 23 99662746 G A 39 54 BRCA TCGA-E9-A1NI CAND2 SNP Missense_Mutation 3 12857414 G A 40 55 BRCA TCGA-E9-A1NI PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-E9-A1NI ARPP21 SNP Silent 3 35780862 G A 39 38 BRCA TCGA-E9-A1NI CELSR3 INS Frame_Shift_Ins 3 48689914 - G 23 45 BRCA TCGA-E9-A1NI ANAPC4 SNP Splice_site 4 25395932 G T 41 84 BRCA TCGA-E9-A1NI PCDHA5 SNP Missense_Mutation 5 140202792 G A 46 92 BRCA TCGA-E9-A1NI CDHR2 INS Frame_Shift_Ins 5 176003133 - C 54 61 BRCA TCGA-E9-A1NI TAX1BP1 INS Frame_Shift_Ins 7 27831635 - T 48 50 BRCA TCGA-E9-A1NI GLI3 INS Frame_Shift_Ins 7 42004243 - T 36 77 BRCA TCGA-E9-A1NI LIMK1 INS Frame_Shift_Ins 7 73535322 - C 46 92 BRCA TCGA-E9-A1NI KIF13B SNP Silent 8 29003919 G A 35 56 BRCA TCGA-E9-A1NI COL5A1 INS Splice_site 9 137642389 - C 42 90 BRCA TCGA-E9-A1NI NDOR1 INS Frame_Shift_Ins 9 140108277 - G 63 27 BRCA TCGA-E9-A1QZ TACR2 SNP Missense_Mutation 10 71175920 C T 19 67 BRCA TCGA-E9-A1QZ DYRK4 SNP Missense_Mutation 12 4708239 C A 29 70 BRCA TCGA-E9-A1QZ PHF12 SNP Missense_Mutation 17 27239625 G A 48 83 BRCA TCGA-E9-A1QZ VPS53 SNP Silent 17 440372 G A 40 47 BRCA TCGA-E9-A1QZ ASXL3 SNP Silent 18 31325521 G A 40 7 BRCA TCGA-E9-A1QZ PSG1 SNP Missense_Mutation 19 43382212 A G 16 43 BRCA TCGA-E9-A1QZ COL4A5 SNP Missense_Mutation 23 107823802 A G 12 57 BRCA TCGA-E9-A1QZ NCAPG SNP Missense_Mutation 4 17819064 A T 2 57 BRCA TCGA-E9-A1QZ C1QTNF3 SNP Missense_Mutation 5 34024111 C A 17 76 BRCA TCGA-E9-A1QZ PPP1R17 SNP Missense_Mutation 7 31735165 T A 51 50 BRCA TCGA-E9-A1R0 SDF4 SNP Missense_Mutation 1 1163972 C T 30 93 BRCA TCGA-E9-A1R0 PLD5 SNP Missense_Mutation 1 242383388 C T 27 89 BRCA TCGA-E9-A1R0 HIVEP3 SNP Missense_Mutation 1 42049238 C T 27 85 BRCA TCGA-E9-A1R0 ST6GALNAC3 SNP Missense_Mutation 1 76877751 G A 42 98 BRCA TCGA-E9-A1R0 TMPRSS4 SNP Missense_Mutation 11 117982545 G A 37 46 BRCA TCGA-E9-A1R0 COMMD9 SNP Silent 11 36300038 G A 41 76 BRCA TCGA-E9-A1R0 PFKM SNP Nonsense_Mutation 12 48538878 G A 47 99 BRCA TCGA-E9-A1R0 PZP SNP Silent 12 9346694 C T 23 59 BRCA TCGA-E9-A1R0 METTL21C SNP Missense_Mutation 13 103343304 C G 32 48 BRCA TCGA-E9-A1R0 OR4K5 SNP Silent 14 20389605 C T 23 40 BRCA TCGA-E9-A1R0 FLRT2 SNP Missense_Mutation 14 86088051 G A 40 74 BRCA TCGA-E9-A1R0 CTCF SNP Missense_Mutation 16 67645418 T C 64 92 BRCA TCGA-E9-A1R0 OSBPL1A SNP Missense_Mutation 18 21894248 G A 39 53 BRCA TCGA-E9-A1R0 CYP4F11 SNP Missense_Mutation 19 16040359 T C 49 44 BRCA TCGA-E9-A1R0 TTN SNP Missense_Mutation 2 179615666 C T 32 74 BRCA TCGA-E9-A1R0 CTNNA2 SNP Missense_Mutation 2 80874927 G A 37 100 BRCA TCGA-E9-A1R0 DOCK11 SNP Silent 23 117785950 G C 45 55 BRCA TCGA-E9-A1R0 THOC2 SNP Missense_Mutation 23 122840715 T A 58 77 BRCA TCGA-E9-A1R0 STAG2 SNP Missense_Mutation 23 123181291 G A 39 99 BRCA TCGA-E9-A1R0 SLC9A6 SNP Silent 23 135098842 C T 32 60 BRCA TCGA-E9-A1R0 LDOC1 SNP Missense_Mutation 23 140270877 C T 21 50 BRCA TCGA-E9-A1R0 RPL10 SNP Missense_Mutation 23 153628228 A C 6 82 BRCA TCGA-E9-A1R0 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-E9-A1R0 DNAH12 SNP Missense_Mutation 3 57357142 G C 33 87 BRCA TCGA-E9-A1R0 EGR1 SNP Silent 5 137803326 C T 31 48 BRCA TCGA-E9-A1R0 DCBLD1 SNP Missense_Mutation 6 117861948 G A 44 60 BRCA TCGA-E9-A1R0 ST18 SNP Silent 8 53074080 G A 45 57 BRCA TCGA-E9-A1R0 ANKRD20A4 SNP Missense_Mutation 9 69421983 G C 48 52 BRCA TCGA-E9-A1R2 TNFRSF8 SNP Missense_Mutation 1 12175747 T A 53 39 BRCA TCGA-E9-A1R2 AADACL4 SNP Missense_Mutation 1 12704575 C T 22 55 BRCA TCGA-E9-A1R2 PRAMEF10 SNP Silent 1 12954890 C T 32 46 BRCA TCGA-E9-A1R2 NBPF11 SNP Missense_Mutation 1 146055349 G A 34 56 BRCA TCGA-E9-A1R2 RPTN SNP Silent 1 152128042 A G 8 50 BRCA TCGA-E9-A1R2 INSRR SNP Missense_Mutation 1 156812803 T A 59 86 BRCA TCGA-E9-A1R2 KIFAP3 SNP Missense_Mutation 1 170007569 C T 29 84 BRCA TCGA-E9-A1R2 ZYG11B SNP Silent 1 53267568 T A 64 51 BRCA TCGA-E9-A1R2 KIAA1107 SNP Missense_Mutation 1 92647600 G C 33 98 BRCA TCGA-E9-A1R2 ITIH5 SNP Missense_Mutation 10 7605192 T A 50 70 BRCA TCGA-E9-A1R2 ASCL3 DEL Frame_Shift_Del 11 8959263 AGAAG - 7 91 BRCA TCGA-E9-A1R2 TXNRD1 SNP Missense_Mutation 12 104713335 C T 22 98 BRCA TCGA-E9-A1R2 KCNA6 SNP Missense_Mutation 12 4920003 G T 44 60 BRCA TCGA-E9-A1R2 AGAP2 SNP Missense_Mutation 12 58128453 C T 22 89 BRCA TCGA-E9-A1R2 STON2 DEL In_Frame_Del 14 81743745 GTG - 48 83 BRCA TCGA-E9-A1R2 ADAL SNP Missense_Mutation 15 43644127 G C 33 55 BRCA TCGA-E9-A1R2 FBN1 SNP Missense_Mutation 15 48766788 T C 57 70 BRCA TCGA-E9-A1R2 FLYWCH1 SNP Missense_Mutation 16 2983148 G A 37 72 BRCA TCGA-E9-A1R2 ADCY7 SNP Missense_Mutation 16 50328657 G A 38 100 BRCA TCGA-E9-A1R2 STAC2 DEL Frame_Shift_Del 17 37369367 CCCGGTC - 18 56 BRCA TCGA-E9-A1R2 PTRF SNP Nonsense_Mutation 17 40557214 T A 63 67 BRCA TCGA-E9-A1R2 LAMA1 SNP Silent 18 7011427 A G 3 58 BRCA TCGA-E9-A1R2 ZNF799 DEL Frame_Shift_Del 19 12501539 TTCTCTC - 64 49 BRCA TCGA-E9-A1R2 ZNF799 DEL Frame_Shift_Del 19 12501549 TG - 51 78 BRCA TCGA-E9-A1R2 WIZ SNP Silent 19 15536452 G C 45 51 BRCA TCGA-E9-A1R2 SLC5A5 SNP Silent 19 17988649 C T 26 54 BRCA TCGA-E9-A1R2 AKT2 SNP Nonsense_Mutation 19 40741973 C T 18 99 BRCA TCGA-E9-A1R2 PRX SNP Silent 19 40902282 G T 41 31 BRCA TCGA-E9-A1R2 MPND SNP Missense_Mutation 19 4354359 C A 26 88 BRCA TCGA-E9-A1R2 MED16 DEL Frame_Shift_Del 19 875294 TT - 56 82 BRCA TCGA-E9-A1R2 ZNF560 SNP Nonsense_Mutation 19 9577765 G A 40 51 BRCA TCGA-E9-A1R2 NEB SNP Nonsense_Mutation 2 152580858 C T 22 98 BRCA TCGA-E9-A1R2 SLC5A6 SNP Missense_Mutation 2 27425725 G C 33 65 BRCA TCGA-E9-A1R2 SPAST SNP Missense_Mutation 2 32361954 G T 45 97 BRCA TCGA-E9-A1R2 SSTR4 SNP Silent 20 23016840 C T 23 39 BRCA TCGA-E9-A1R2 TAF4 DEL Splice_Site 20 60578806 CTGGAT - 28 53 BRCA TCGA-E9-A1R2 P2RY8 DEL Frame_Shift_Del 23 1584682 AGCACGA - 11 82 BRCA TCGA-E9-A1R2 MXRA5 SNP Silent 23 3239601 T C 55 50 BRCA TCGA-E9-A1R2 FAM47B SNP Nonsense_Mutation 23 34961414 G T 37 54 BRCA TCGA-E9-A1R2 RBM3 SNP Missense_Mutation 23 48434030 T A 60 64 BRCA TCGA-E9-A1R2 TFG SNP Missense_Mutation 3 100467337 G T 47 58 BRCA TCGA-E9-A1R2 PSMD2 SNP Missense_Mutation 3 184018176 C G 30 99 BRCA TCGA-E9-A1R2 EPHA3 SNP Missense_Mutation 3 89521635 C G 18 84 BRCA TCGA-E9-A1R2 EXOSC9 SNP Missense_Mutation 4 122737590 C G 21 60 BRCA TCGA-E9-A1R2 C4orf47 SNP Missense_Mutation 4 186370764 A G 3 58 BRCA TCGA-E9-A1R2 USO1 DEL Frame_Shift_Del 4 76692017 ACTTCTCTTTTAAAACA - 14 94 BRCA TCGA-E9-A1R2 FBXL17 SNP Missense_Mutation 5 107216824 A G 6 91 BRCA TCGA-E9-A1R2 PCDHGA7 SNP Missense_Mutation 5 140764619 G A 38 71 BRCA TCGA-E9-A1R2 GFPT2 SNP Missense_Mutation 5 179745913 C T 31 86 BRCA TCGA-E9-A1R2 ITGA1 SNP Missense_Mutation 5 52240786 G C 34 81 BRCA TCGA-E9-A1R2 VWDE SNP Missense_Mutation 7 12391277 T C 56 64 BRCA TCGA-E9-A1R2 ASAP1 SNP Missense_Mutation 8 131226804 G C 33 82 BRCA TCGA-E9-A1R2 SBSPON SNP Nonsense_Mutation 8 73982160 C T 21 81 BRCA TCGA-E9-A1R2 TLR4 SNP Missense_Mutation 9 120475050 T C 51 83 BRCA TCGA-E9-A1R2 TLR4 SNP Missense_Mutation 9 120475844 G T 47 62 BRCA TCGA-E9-A1R2 LCN2 SNP Silent 9 130913971 C G 27 62 BRCA TCGA-E9-A1R2 SH3GLB2 SNP Silent 9 131772130 G T 41 49 BRCA TCGA-E9-A1R2 FAM75A6 SNP Missense_Mutation 9 43625257 C T 19 37 BRCA TCGA-E9-A1R2 GLDC SNP Missense_Mutation 9 6605176 C G 24 63 BRCA TCGA-E9-A1R3 GBP3 SNP Missense_Mutation 1 89477458 A T 6 50 BRCA TCGA-E9-A1R3 MUC2 SNP Missense_Mutation 11 1090928 A C 6 37 BRCA TCGA-E9-A1R3 OPCML SNP Silent 11 132527109 C A 21 62 BRCA TCGA-E9-A1R3 RAB21 SNP Missense_Mutation 12 72149064 T C 55 87 BRCA TCGA-E9-A1R3 TRPM1 SNP Missense_Mutation 15 31338429 G T 34 96 BRCA TCGA-E9-A1R3 RHBDF1 SNP Missense_Mutation 16 109808 C T 28 71 BRCA TCGA-E9-A1R3 RBBP6 SNP Silent 16 24560353 A G 16 54 BRCA TCGA-E9-A1R3 DHX40 SNP Missense_Mutation 17 57652830 C T 17 96 BRCA TCGA-E9-A1R3 TSPAN16 SNP Splice_Site 19 11409546 A C 15 54 BRCA TCGA-E9-A1R3 NLRP7 SNP Missense_Mutation 19 55451000 C A 19 50 BRCA TCGA-E9-A1R3 MUC16 SNP Missense_Mutation 19 9068688 G A 45 53 BRCA TCGA-E9-A1R3 RGPD3 SNP Silent 2 107029550 C T 23 48 BRCA TCGA-E9-A1R3 MYO7B SNP Missense_Mutation 2 128364902 G A 38 98 BRCA TCGA-E9-A1R3 SF3B1 SNP Missense_Mutation 2 198267481 T C 61 92 BRCA TCGA-E9-A1R3 ADAM23 SNP Splice_Site 2 207406859 G A 36 84 BRCA TCGA-E9-A1R3 RBM44 SNP Missense_Mutation 2 238728887 A C 11 52 BRCA TCGA-E9-A1R3 ZNF217 SNP Silent 20 52192684 G A 37 30 BRCA TCGA-E9-A1R3 TPTE SNP Missense_Mutation 21 10914388 G A 41 52 BRCA TCGA-E9-A1R3 PJA1 SNP Silent 23 68382137 G C 34 55 BRCA TCGA-E9-A1R3 HDAC8 SNP Nonsense_Mutation 23 71681922 G A 37 90 BRCA TCGA-E9-A1R3 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E9-A1R3 DNASE1L3 SNP Missense_Mutation 3 58178422 G A 40 52 BRCA TCGA-E9-A1R3 ELOVL6 SNP Missense_Mutation 4 111026713 C G 31 98 BRCA TCGA-E9-A1R3 TARS SNP Missense_Mutation 5 33457372 C T 19 100 BRCA TCGA-E9-A1R3 EYA4 SNP Missense_Mutation 6 133783605 G T 46 63 BRCA TCGA-E9-A1R3 C6orf62 DEL Frame_Shift_Del 6 24709014 CTGT - 28 81 BRCA TCGA-E9-A1R3 DAXX DEL In_Frame_Del 6 33288577 CTGTAA - 24 72 BRCA TCGA-E9-A1R3 FERD3L INS Frame_Shift_Ins 7 19184779 - A 21 48 BRCA TCGA-E9-A1R3 IKBKAP SNP Missense_Mutation 9 111655314 C G 17 51 BRCA TCGA-E9-A1R3 ABCA2 SNP Silent 9 139905720 G A 45 53 BRCA TCGA-E9-A1R4 PTPRC SNP Missense_Mutation 1 198668702 C T 29 54 BRCA TCGA-E9-A1R4 NBL1 SNP Missense_Mutation 1 19983527 C T 29 81 BRCA TCGA-E9-A1R4 KDM5B SNP Missense_Mutation 1 202736181 T C 55 70 BRCA TCGA-E9-A1R4 CDC42BPA SNP Nonsense_Mutation 1 227259959 G C 45 69 BRCA TCGA-E9-A1R4 HNRNPR SNP Splice_Site 1 23648158 T C 55 87 BRCA TCGA-E9-A1R4 AKT3 SNP Missense_Mutation 1 243828108 C T 32 100 BRCA TCGA-E9-A1R4 RHD SNP Missense_Mutation 1 25627521 C G 32 52 BRCA TCGA-E9-A1R4 TMEM125 SNP Silent 1 43738486 G A 38 34 BRCA TCGA-E9-A1R4 PIP4K2A SNP Silent 10 22896829 G A 41 57 BRCA TCGA-E9-A1R4 PRTFDC1 SNP Missense_Mutation 10 25226277 C A 30 71 BRCA TCGA-E9-A1R4 OGDHL SNP Missense_Mutation 10 50944413 C T 27 99 BRCA TCGA-E9-A1R4 TET1 SNP Missense_Mutation 10 70360776 G T 34 79 BRCA TCGA-E9-A1R4 TMPRSS5 SNP Missense_Mutation 11 113569711 C T 23 54 BRCA TCGA-E9-A1R4 PKNOX2 SNP Missense_Mutation 11 125301095 C G 30 94 BRCA TCGA-E9-A1R4 C11orf74 SNP Missense_Mutation 11 36654963 C A 20 62 BRCA TCGA-E9-A1R4 ANO9 SNP Missense_Mutation 11 418925 C T 29 49 BRCA TCGA-E9-A1R4 OR52I2 SNP Missense_Mutation 11 4608668 G A 48 93 BRCA TCGA-E9-A1R4 OR4S1 SNP Missense_Mutation 11 48328481 C G 30 63 BRCA TCGA-E9-A1R4 TCHP SNP Silent 12 110341868 G C 45 54 BRCA TCGA-E9-A1R4 WDR66 SNP Missense_Mutation 12 122361793 C T 30 57 BRCA TCGA-E9-A1R4 WDR66 INS Frame_Shift_Ins 12 122361879 - C 6 40 BRCA TCGA-E9-A1R4 KNTC1 SNP Silent 12 123068876 G C 45 53 BRCA TCGA-E9-A1R4 XPOT SNP Missense_Mutation 12 64815079 T A 49 91 BRCA TCGA-E9-A1R4 XPOT SNP Silent 12 64815164 G A 45 47 BRCA TCGA-E9-A1R4 GNS SNP Silent 12 65122796 G A 48 63 BRCA TCGA-E9-A1R4 MYCBP2 SNP Missense_Mutation 13 77663147 C G 29 54 BRCA TCGA-E9-A1R4 SCFD1 SNP Splice_site 14 31188583 G C 35 82 BRCA TCGA-E9-A1R4 LTK SNP Missense_Mutation 15 41804458 G A 45 94 BRCA TCGA-E9-A1R4 SNUPN SNP Missense_Mutation 15 75897511 C T 32 94 BRCA TCGA-E9-A1R4 VPS33B SNP Missense_Mutation 15 91550259 C G 30 95 BRCA TCGA-E9-A1R4 BAIAP3 SNP Silent 16 1392617 C G 29 57 BRCA TCGA-E9-A1R4 CRAMP1L SNP Nonsense_Mutation 16 1719082 C T 21 81 BRCA TCGA-E9-A1R4 OTOA SNP Missense_Mutation 16 21726421 C G 30 66 BRCA TCGA-E9-A1R4 COG7 SNP Missense_Mutation 16 23415115 C T 31 74 BRCA TCGA-E9-A1R4 MYO18A SNP Silent 17 27493080 C T 21 75 BRCA TCGA-E9-A1R4 TRPV3 SNP Missense_Mutation 17 3430193 G A 37 82 BRCA TCGA-E9-A1R4 MLX SNP Missense_Mutation 17 40722064 G C 45 100 BRCA TCGA-E9-A1R4 MYOM1 SNP Missense_Mutation 18 3187502 C T 26 97 BRCA TCGA-E9-A1R4 ST8SIA3 SNP Silent 18 55027376 T C 52 59 BRCA TCGA-E9-A1R4 UBA52 SNP Missense_Mutation 19 18685883 C T 29 93 BRCA TCGA-E9-A1R4 TM6SF2 SNP Silent 19 19379481 G T 33 56 BRCA TCGA-E9-A1R4 TSHZ3 SNP Silent 19 31767666 G A 39 41 BRCA TCGA-E9-A1R4 TGFB1 SNP Missense_Mutation 19 41858865 C T 22 66 BRCA TCGA-E9-A1R4 MYO1F SNP Missense_Mutation 19 8587599 C G 30 80 BRCA TCGA-E9-A1R4 DPP10 SNP Missense_Mutation 2 116520181 C G 29 70 BRCA TCGA-E9-A1R4 TTN SNP Missense_Mutation 2 179458942 C T 32 100 BRCA TCGA-E9-A1R4 TTN SNP Missense_Mutation 2 179462304 C T 28 100 BRCA TCGA-E9-A1R4 TTN SNP Missense_Mutation 2 179466175 C G 29 100 BRCA TCGA-E9-A1R4 C2orf47 SNP Silent 2 200826646 C T 28 47 BRCA TCGA-E9-A1R4 NBEAL1 SNP Nonsense_Mutation 2 204058611 G T 45 66 BRCA TCGA-E9-A1R4 NRP2 SNP Missense_Mutation 2 206656994 G A 45 80 BRCA TCGA-E9-A1R4 ADAM23 SNP Silent 2 207482334 C A 29 73 BRCA TCGA-E9-A1R4 PTPRN SNP Missense_Mutation 2 220164932 C T 27 56 BRCA TCGA-E9-A1R4 ECEL1 SNP Missense_Mutation 2 233349542 G A 40 83 BRCA TCGA-E9-A1R4 NRXN1 SNP Missense_Mutation 2 50149372 C T 24 77 BRCA TCGA-E9-A1R4 LBX2 SNP Silent 2 74725249 C T 32 68 BRCA TCGA-E9-A1R4 TFAP2C SNP Missense_Mutation 20 55209300 A C 10 91 BRCA TCGA-E9-A1R4 DSCAM SNP Missense_Mutation 21 41719621 C G 32 99 BRCA TCGA-E9-A1R4 DIP2A SNP Missense_Mutation 21 47931393 A G 11 90 BRCA TCGA-E9-A1R4 GNB1L SNP Silent 22 19794230 C G 31 48 BRCA TCGA-E9-A1R4 FOXRED2 SNP Missense_Mutation 22 36897374 C T 23 84 BRCA TCGA-E9-A1R4 GUCY2F SNP Missense_Mutation 23 108652304 C T 24 59 BRCA TCGA-E9-A1R4 RGAG1 SNP Missense_Mutation 23 109694516 C T 22 58 BRCA TCGA-E9-A1R4 DOCK11 SNP Missense_Mutation 23 117819732 G A 45 59 BRCA TCGA-E9-A1R4 ATP11C SNP Nonsense_Mutation 23 138880454 G A 45 97 BRCA TCGA-E9-A1R4 EIF2S3 SNP Missense_Mutation 23 24082437 G A 33 95 BRCA TCGA-E9-A1R4 SMC1A SNP Nonsense_Mutation 23 53436124 C A 29 96 BRCA TCGA-E9-A1R4 AR SNP Missense_Mutation 23 66863184 C T 32 93 BRCA TCGA-E9-A1R4 LPAR4 SNP Missense_Mutation 23 78010427 A T 7 53 BRCA TCGA-E9-A1R4 ITM2A SNP Missense_Mutation 23 78619023 T A 54 59 BRCA TCGA-E9-A1R4 SLC6A1 SNP Silent 3 11059539 G A 45 53 BRCA TCGA-E9-A1R4 UROC1 SNP Missense_Mutation 3 126228489 G T 40 64 BRCA TCGA-E9-A1R4 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-E9-A1R4 SCN10A SNP Missense_Mutation 3 38739417 G C 37 87 BRCA TCGA-E9-A1R4 SCN10A SNP Missense_Mutation 3 38755528 T A 62 65 BRCA TCGA-E9-A1R4 LAMB2 SNP Missense_Mutation 3 49163484 G T 33 61 BRCA TCGA-E9-A1R4 DOCK3 SNP Silent 3 51101917 G T 45 72 BRCA TCGA-E9-A1R4 AGXT2L1 SNP Silent 4 109670466 C T 23 38 BRCA TCGA-E9-A1R4 DCHS2 SNP Silent 4 155254228 G A 38 11 BRCA TCGA-E9-A1R4 VEGFC SNP Silent 4 177650829 G T 33 51 BRCA TCGA-E9-A1R4 MYL5 SNP Missense_Mutation 4 672772 G C 37 59 BRCA TCGA-E9-A1R4 PKD2 SNP Missense_Mutation 4 88987028 G C 33 79 BRCA TCGA-E9-A1R4 SLC22A4 SNP Silent 5 131676322 C A 29 48 BRCA TCGA-E9-A1R4 OR2V1 SNP Missense_Mutation 5 180551426 C G 29 50 BRCA TCGA-E9-A1R4 GNB2L1 SNP Silent 5 180666577 C T 32 54 BRCA TCGA-E9-A1R4 LIFR SNP Nonsense_Mutation 5 38504178 G C 45 83 BRCA TCGA-E9-A1R4 MAP1B SNP Silent 5 71499538 G A 45 83 BRCA TCGA-E9-A1R4 FUCA2 SNP Missense_Mutation 6 143828431 C T 32 74 BRCA TCGA-E9-A1R4 ZNF391 SNP Silent 6 27369106 C A 22 47 BRCA TCGA-E9-A1R4 ETV7 SNP Nonsense_Mutation 6 36343650 G C 45 91 BRCA TCGA-E9-A1R4 KIAA0240 SNP Missense_Mutation 6 42797254 C A 29 71 BRCA TCGA-E9-A1R4 RPP40 SNP Missense_Mutation 6 5002461 C G 29 84 BRCA TCGA-E9-A1R4 IQUB SNP Nonsense_Mutation 7 123097473 C A 29 96 BRCA TCGA-E9-A1R4 EFR3A SNP Missense_Mutation 8 133023110 G C 45 97 BRCA TCGA-E9-A1R4 GPT SNP Missense_Mutation 8 145729709 C T 23 60 BRCA TCGA-E9-A1R4 ENTPD4 SNP Missense_Mutation 8 23299120 C T 31 95 BRCA TCGA-E9-A1R4 SULF1 SNP Missense_Mutation 8 70498615 G A 45 100 BRCA TCGA-E9-A1R4 NR4A3 SNP Missense_Mutation 9 102595783 A G 16 37 BRCA TCGA-E9-A1R4 SVEP1 SNP Missense_Mutation 9 113173528 C A 21 100 BRCA TCGA-E9-A1R4 FKBP15 SNP Nonsense_Mutation 9 115932000 G A 45 59 BRCA TCGA-E9-A1R5 FAM63A SNP Missense_Mutation 1 150969810 C T 30 78 BRCA TCGA-E9-A1R5 GLUL SNP Nonsense_Mutation 1 182355487 G A 47 74 BRCA TCGA-E9-A1R5 LHX9 SNP Silent 1 197890707 C T 19 46 BRCA TCGA-E9-A1R5 ENAH SNP Missense_Mutation 1 225702347 G A 36 87 BRCA TCGA-E9-A1R5 KDELC2 SNP Missense_Mutation 11 108361856 G T 44 55 BRCA TCGA-E9-A1R5 OR4C13 SNP Missense_Mutation 11 49974275 G A 47 53 BRCA TCGA-E9-A1R5 RNF41 SNP Nonsense_Mutation 12 56607765 C A 21 100 BRCA TCGA-E9-A1R5 SLC2A3 SNP Silent 12 8086481 T G 49 61 BRCA TCGA-E9-A1R5 ABCD4 SNP Splice_Site 14 74758989 C T 19 91 BRCA TCGA-E9-A1R5 MKRN3 SNP Missense_Mutation 15 23812334 C T 31 50 BRCA TCGA-E9-A1R5 MPI SNP Missense_Mutation 15 75190052 G A 40 99 BRCA TCGA-E9-A1R5 CLCN7 SNP Silent 16 1497552 G T 47 50 BRCA TCGA-E9-A1R5 MYH2 SNP Silent 17 10432037 A G 15 42 BRCA TCGA-E9-A1R5 CCDC144A SNP Missense_Mutation 17 16638041 A T 8 50 BRCA TCGA-E9-A1R5 ERBB2 SNP Missense_Mutation 17 37880261 G T 33 98 BRCA TCGA-E9-A1R5 MED13 SNP Nonsense_Mutation 17 60088032 T A 62 75 BRCA TCGA-E9-A1R5 ZNF439 SNP Missense_Mutation 19 11979122 A T 3 51 BRCA TCGA-E9-A1R5 ATCAY SNP Missense_Mutation 19 3907867 G A 40 94 BRCA TCGA-E9-A1R5 PEG3 SNP Missense_Mutation 19 57325512 A G 4 45 BRCA TCGA-E9-A1R5 NDUFA7 SNP Silent 19 8381508 G A 41 52 BRCA TCGA-E9-A1R5 RBL1 SNP Missense_Mutation 20 35627233 C A 19 57 BRCA TCGA-E9-A1R5 CSTF1 SNP Silent 20 54974292 C T 19 39 BRCA TCGA-E9-A1R5 RUNX1 DEL Frame_Shift_Del 21 36171700 CCAGGTATTGGTAGGA - 22 74 BRCA TCGA-E9-A1R5 DMD SNP Nonsense_Mutation 23 31792301 G A 45 63 BRCA TCGA-E9-A1R5 PLXNA1 SNP Silent 3 126736504 C T 29 73 BRCA TCGA-E9-A1R5 DNAJC13 INS In_Frame_Ins 3 132213003 - CTT 33 100 BRCA TCGA-E9-A1R5 PIK3CA SNP Missense_Mutation 3 178927980 T C 55 89 BRCA TCGA-E9-A1R5 BSN SNP Missense_Mutation 3 49689363 C T 27 53 BRCA TCGA-E9-A1R5 TRIM36 SNP Missense_Mutation 5 114482989 C T 31 98 BRCA TCGA-E9-A1R5 ZFPM2 SNP Missense_Mutation 8 106815386 G A 46 69 BRCA TCGA-E9-A1R5 KIAA0146 SNP Missense_Mutation 8 48647918 G C 48 78 BRCA TCGA-E9-A1R5 PI15 SNP Missense_Mutation 8 75761435 G C 45 66 BRCA TCGA-E9-A1R5 SPTAN1 SNP Missense_Mutation 9 131371190 A C 7 91 BRCA TCGA-E9-A1R5 PIGO DEL Frame_Shift_Del 9 35095358 GCGAAAA - 38 56 BRCA TCGA-E9-A1R5 MELK SNP Missense_Mutation 9 36594707 A G 7 94 BRCA TCGA-E9-A1R5 HSD17B3 SNP Silent 9 99064321 C T 31 49 BRCA TCGA-E9-A1R6 CDC14A SNP Nonsense_Mutation 1 100960455 C T 17 74 BRCA TCGA-E9-A1R6 OR2T35 INS Frame_Shift_Ins 1 248801953 - T 7 54 BRCA TCGA-E9-A1R6 TTLL7 SNP Missense_Mutation 1 84385515 C T 31 97 BRCA TCGA-E9-A1R6 LRRC8C SNP Missense_Mutation 1 90179621 G A 40 86 BRCA TCGA-E9-A1R6 KCNA4 SNP Silent 11 30033317 G T 47 52 BRCA TCGA-E9-A1R6 NAALADL1 SNP Missense_Mutation 11 64822123 C T 31 55 BRCA TCGA-E9-A1R6 KIAA1731 SNP Missense_Mutation 11 93463081 C T 32 42 BRCA TCGA-E9-A1R6 CD4 SNP Missense_Mutation 12 6926405 G T 33 50 BRCA TCGA-E9-A1R6 INTS6 SNP Missense_Mutation 13 51961567 C A 26 97 BRCA TCGA-E9-A1R6 AP1G2 SNP Missense_Mutation 14 24028968 G A 37 89 BRCA TCGA-E9-A1R6 RYR3 SNP Silent 15 33944994 C T 19 50 BRCA TCGA-E9-A1R6 DHRS7C SNP Missense_Mutation 17 9674897 C A 27 94 BRCA TCGA-E9-A1R6 ZNF440 SNP Silent 19 11942981 C T 19 52 BRCA TCGA-E9-A1R6 FMNL2 SNP Missense_Mutation 2 153417524 C T 23 95 BRCA TCGA-E9-A1R6 PTMA DEL In_Frame_Del 2 232576068 AGA - 11 82 BRCA TCGA-E9-A1R6 KIF1A SNP Missense_Mutation 2 241708612 C T 26 96 BRCA TCGA-E9-A1R6 ATP1B4 SNP Missense_Mutation 23 119496076 G A 38 51 BRCA TCGA-E9-A1R6 PLXNA3 SNP Missense_Mutation 23 153694159 G A 42 64 BRCA TCGA-E9-A1R6 TFE3 SNP Silent 23 48895568 G A 39 23 BRCA TCGA-E9-A1R6 CACNA1F SNP Silent 23 49083475 G A 39 38 BRCA TCGA-E9-A1R6 TRIML1 SNP Missense_Mutation 4 189068024 C T 31 91 BRCA TCGA-E9-A1R6 GK2 SNP Missense_Mutation 4 80327715 C G 32 67 BRCA TCGA-E9-A1R6 MAP3K1 INS Frame_Shift_Ins 5 56171058 - A 41 94 BRCA TCGA-E9-A1R6 MAP3K1 DEL Frame_Shift_Del 5 56177011 ATAG - 16 62 BRCA TCGA-E9-A1R6 KIAA0408 SNP Missense_Mutation 6 127767979 C A 30 72 BRCA TCGA-E9-A1R6 MED23 SNP Missense_Mutation 6 131925359 A T 10 79 BRCA TCGA-E9-A1R6 ZNF800 SNP Silent 7 127014790 T C 55 50 BRCA TCGA-E9-A1R6 CNBD1 SNP Silent 8 88365983 G A 33 51 BRCA TCGA-E9-A1R7 TAF13 SNP Missense_Mutation 1 109617632 C A 32 79 BRCA TCGA-E9-A1R7 PVRL4 SNP Missense_Mutation 1 161059016 G A 45 71 BRCA TCGA-E9-A1R7 UBR4 SNP Silent 1 19439335 C T 17 53 BRCA TCGA-E9-A1R7 ATP2B4 SNP Missense_Mutation 1 203680228 C T 27 74 BRCA TCGA-E9-A1R7 KCTD3 SNP Nonsense_Mutation 1 215768802 C T 29 100 BRCA TCGA-E9-A1R7 MARC2 SNP Silent 1 220953546 C T 29 55 BRCA TCGA-E9-A1R7 CNIH4 SNP Missense_Mutation 1 224566784 C T 22 50 BRCA TCGA-E9-A1R7 AHCTF1 SNP Missense_Mutation 1 247007193 T G 53 50 BRCA TCGA-E9-A1R7 JAK1 SNP Missense_Mutation 1 65335075 C T 17 97 BRCA TCGA-E9-A1R7 NRP1 SNP Missense_Mutation 10 33469188 G A 42 85 BRCA TCGA-E9-A1R7 GATA3 INS Frame_Shift_Ins 10 8115941 - T 24 54 BRCA TCGA-E9-A1R7 MUC5B SNP Missense_Mutation 11 1266479 G T 43 50 BRCA TCGA-E9-A1R7 EXT2 SNP Missense_Mutation 11 44219400 C T 30 100 BRCA TCGA-E9-A1R7 PHRF1 SNP Silent 11 605238 G A 39 47 BRCA TCGA-E9-A1R7 OR2AG1 SNP Missense_Mutation 11 6806874 G A 47 58 BRCA TCGA-E9-A1R7 ANO4 SNP Silent 12 101490420 C T 31 40 BRCA TCGA-E9-A1R7 TEP1 SNP Missense_Mutation 14 20876196 G C 45 54 BRCA TCGA-E9-A1R7 NFATC4 SNP Silent 14 24836347 A C 6 39 BRCA TCGA-E9-A1R7 MKRN3 SNP Missense_Mutation 15 23811660 G A 46 93 BRCA TCGA-E9-A1R7 CASC4 SNP Missense_Mutation 15 44615184 T A 50 80 BRCA TCGA-E9-A1R7 ACAN SNP Nonsense_Mutation 15 89388987 G T 45 42 BRCA TCGA-E9-A1R7 PRKCB SNP Silent 16 24135281 G A 47 54 BRCA TCGA-E9-A1R7 ITGAL SNP Silent 16 30515580 A C 3 44 BRCA TCGA-E9-A1R7 SALL1 SNP Silent 16 51175500 G T 43 60 BRCA TCGA-E9-A1R7 MYH8 SNP Splice_site 17 10298758 C G 26 96 BRCA TCGA-E9-A1R7 STAT3 SNP Missense_Mutation 17 40497585 C T 25 83 BRCA TCGA-E9-A1R7 CEP112 SNP Silent 17 63898300 T C 64 58 BRCA TCGA-E9-A1R7 RPTOR SNP Silent 17 78704422 G T 37 49 BRCA TCGA-E9-A1R7 PHLPP1 SNP Missense_Mutation 18 60563042 T G 56 55 BRCA TCGA-E9-A1R7 FCGBP SNP Missense_Mutation 19 40373992 C G 22 54 BRCA TCGA-E9-A1R7 GSK3A SNP Missense_Mutation 19 42738739 T C 58 86 BRCA TCGA-E9-A1R7 INO80D SNP Missense_Mutation 2 206869432 G T 41 99 BRCA TCGA-E9-A1R7 UNC80 SNP Missense_Mutation 2 210841715 A G 8 92 BRCA TCGA-E9-A1R7 IQCA1 SNP Splice_site 2 237240002 C T 24 73 BRCA TCGA-E9-A1R7 TPRKB SNP Missense_Mutation 2 73957812 G C 33 58 BRCA TCGA-E9-A1R7 TMEM131 SNP Missense_Mutation 2 98422132 T C 52 67 BRCA TCGA-E9-A1R7 SIGLEC1 SNP Missense_Mutation 20 3682202 G T 42 81 BRCA TCGA-E9-A1R7 STXBP5L SNP Missense_Mutation 3 121137241 C T 21 79 BRCA TCGA-E9-A1R7 MASP1 SNP Missense_Mutation 3 186953750 G A 39 86 BRCA TCGA-E9-A1R7 MUC4 SNP Silent 3 195507762 T G 55 50 BRCA TCGA-E9-A1R7 ZNF330 SNP Missense_Mutation 4 142150807 C A 18 100 BRCA TCGA-E9-A1R7 PJA2 SNP Missense_Mutation 5 108714080 C T 32 60 BRCA TCGA-E9-A1R7 WWC1 SNP Missense_Mutation 5 167798457 T A 55 92 BRCA TCGA-E9-A1R7 IL7R SNP Missense_Mutation 5 35874629 T C 59 58 BRCA TCGA-E9-A1R7 HIST1H2AH SNP Missense_Mutation 6 27115041 G A 41 91 BRCA TCGA-E9-A1R7 SLC35B3 SNP Silent 6 8417217 C T 30 60 BRCA TCGA-E9-A1R7 PEX1 SNP Missense_Mutation 7 92119083 T C 50 79 BRCA TCGA-E9-A1R7 AGPAT6 SNP Missense_Mutation 8 41467297 G A 39 97 BRCA TCGA-E9-A1R7 RP1 SNP Nonsense_Mutation 8 55540310 C T 29 54 BRCA TCGA-E9-A1R7 SDC2 SNP Missense_Mutation 8 97605791 C A 19 37 BRCA TCGA-E9-A1R7 RGS3 SNP Missense_Mutation 9 116224016 A G 4 46 BRCA TCGA-E9-A1R7 ORM2 SNP Silent 9 117092487 G A 34 52 BRCA TCGA-E9-A1R7 PRSS3 SNP Missense_Mutation 9 33797959 C G 29 62 BRCA TCGA-E9-A1R7 TRPM3 SNP Silent 9 73152123 C T 23 11 BRCA TCGA-E9-A1RA NTPCR SNP Silent 1 233092096 A G 15 48 BRCA TCGA-E9-A1RA LRRC7 SNP Missense_Mutation 1 70397248 G A 45 79 BRCA TCGA-E9-A1RA GATA3 INS Frame_Shift_Ins 10 8111543 - TACTGAA 32 43 BRCA TCGA-E9-A1RA LRRC10 SNP Silent 12 70004328 C T 29 57 BRCA TCGA-E9-A1RA NEK3 SNP Missense_Mutation 13 52725510 C A 32 54 BRCA TCGA-E9-A1RA TMC7 SNP Missense_Mutation 16 19070770 G A 41 86 BRCA TCGA-E9-A1RA PPL SNP Missense_Mutation 16 4933762 C T 31 100 BRCA TCGA-E9-A1RA CLEC18C SNP Missense_Mutation 16 70211379 C T 19 80 BRCA TCGA-E9-A1RA PRKAR1A DEL Frame_Shift_Del 17 66511555 TACCGCC - 57 51 BRCA TCGA-E9-A1RA NEURL4 SNP Missense_Mutation 17 7227242 G A 38 84 BRCA TCGA-E9-A1RA OR7C2 SNP Silent 19 15053236 G A 35 36 BRCA TCGA-E9-A1RA NLRP5 SNP Silent 19 56565031 G A 40 29 BRCA TCGA-E9-A1RA CCDC74A SNP Silent 2 132288159 C T 24 52 BRCA TCGA-E9-A1RA KIF16B SNP Missense_Mutation 20 16488613 T C 56 93 BRCA TCGA-E9-A1RA GRAMD4 SNP Silent 22 47070636 C T 19 50 BRCA TCGA-E9-A1RA DMD SNP Missense_Mutation 23 32613970 T G 56 49 BRCA TCGA-E9-A1RA CCDC14 SNP Missense_Mutation 3 123663791 T C 49 67 BRCA TCGA-E9-A1RA LEKR1 SNP Missense_Mutation 3 156710975 A G 11 58 BRCA TCGA-E9-A1RA PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-E9-A1RA GLT8D1 SNP Silent 3 52729291 A C 7 50 BRCA TCGA-E9-A1RA GRM6 SNP Silent 5 178408703 C T 23 36 BRCA TCGA-E9-A1RA WBSCR17 SNP Silent 7 71175847 G T 42 48 BRCA TCGA-E9-A1RA PTK2 SNP Missense_Mutation 8 141749152 C A 31 99 BRCA TCGA-E9-A1RB NBPF11 SNP Missense_Mutation 1 146055394 A G 2 56 BRCA TCGA-E9-A1RB CFH SNP Missense_Mutation 1 196711113 A G 14 63 BRCA TCGA-E9-A1RB ZNF281 SNP Missense_Mutation 1 200378052 T C 51 90 BRCA TCGA-E9-A1RB LCK SNP Missense_Mutation 1 32745462 C A 29 78 BRCA TCGA-E9-A1RB ANK3 SNP Missense_Mutation 10 61959967 G A 46 100 BRCA TCGA-E9-A1RB NAT10 SNP Silent 11 34160963 C T 24 54 BRCA TCGA-E9-A1RB ADRBK1 SNP Missense_Mutation 11 67050279 C T 19 94 BRCA TCGA-E9-A1RB RNF113B SNP Missense_Mutation 13 98828595 C A 26 78 BRCA TCGA-E9-A1RB OR4E2 SNP Silent 14 22133650 G T 47 97 BRCA TCGA-E9-A1RB VWA3A SNP Silent 16 22142969 G A 47 49 BRCA TCGA-E9-A1RB PRSS8 SNP Silent 16 31144597 G T 34 42 BRCA TCGA-E9-A1RB PIGQ SNP Missense_Mutation 16 624165 G A 40 82 BRCA TCGA-E9-A1RB STAT5A SNP Silent 17 40456393 C T 27 50 BRCA TCGA-E9-A1RB LPO SNP Silent 17 56344804 G A 36 53 BRCA TCGA-E9-A1RB TP53 SNP Missense_Mutation 17 7577082 C G 30 80 BRCA TCGA-E9-A1RB TMEM200C SNP Missense_Mutation 18 5891633 A G 11 57 BRCA TCGA-E9-A1RB CNDP2 SNP Missense_Mutation 18 72173106 C T 23 99 BRCA TCGA-E9-A1RB KIR3DL1 SNP Splice_Site 19 55341436 G A 44 55 BRCA TCGA-E9-A1RB C3 SNP Missense_Mutation 19 6694484 C G 23 68 BRCA TCGA-E9-A1RB BAZ2B SNP Missense_Mutation 2 160304785 G A 37 90 BRCA TCGA-E9-A1RB WIPF1 SNP Silent 2 175436606 C T 27 31 BRCA TCGA-E9-A1RB LOXL3 SNP Missense_Mutation 2 74761688 C T 27 95 BRCA TCGA-E9-A1RB PTPRT SNP Missense_Mutation 20 41420080 C T 21 100 BRCA TCGA-E9-A1RB KRTAP19-7 DEL Frame_Shift_Del 21 31933504 CA - 21 60 BRCA TCGA-E9-A1RB SMARCA1 SNP Missense_Mutation 23 128649967 G A 39 98 BRCA TCGA-E9-A1RB SEMA6A SNP Missense_Mutation 5 115783352 C G 18 63 BRCA TCGA-E9-A1RB HIP1 SNP Missense_Mutation 7 75182834 G T 41 60 BRCA TCGA-E9-A1RC FLG SNP Missense_Mutation 1 152280087 C G 20 27 BRCA TCGA-E9-A1RC FMO3 SNP Silent 1 171086558 C T 31 60 BRCA TCGA-E9-A1RC TLR5 SNP Missense_Mutation 1 223285350 T G 63 78 BRCA TCGA-E9-A1RC MACF1 SNP Missense_Mutation 1 39797089 A G 7 71 BRCA TCGA-E9-A1RC FOXJ3 SNP Missense_Mutation 1 42657000 G C 43 88 BRCA TCGA-E9-A1RC GATA3 DEL Frame_Shift_Del 10 8115719 TA - 53 50 BRCA TCGA-E9-A1RC OR51E1 SNP Missense_Mutation 11 4674561 C T 27 52 BRCA TCGA-E9-A1RC OR5L2 SNP Missense_Mutation 11 55595368 T A 50 62 BRCA TCGA-E9-A1RC CIT SNP Missense_Mutation 12 120128239 G A 47 100 BRCA TCGA-E9-A1RC SLCO1B3 SNP Missense_Mutation 12 21028243 T C 52 30 BRCA TCGA-E9-A1RC CALCOCO1 SNP Silent 12 54110179 T C 60 51 BRCA TCGA-E9-A1RC RB1 SNP Nonsense_Mutation 13 48953760 C T 23 71 BRCA TCGA-E9-A1RC SLC22A17 SNP Missense_Mutation 14 23818534 C A 31 72 BRCA TCGA-E9-A1RC LRFN5 SNP Missense_Mutation 14 42360748 C T 17 81 BRCA TCGA-E9-A1RC PTGR2 SNP Silent 14 74340785 A G 3 54 BRCA TCGA-E9-A1RC ZNF710 SNP Missense_Mutation 15 90611283 C T 19 97 BRCA TCGA-E9-A1RC KAT8 SNP Missense_Mutation 16 31138663 C G 23 72 BRCA TCGA-E9-A1RC NUTF2 SNP Silent 16 67902251 G A 40 48 BRCA TCGA-E9-A1RC GIP SNP Missense_Mutation 17 47038347 G A 41 57 BRCA TCGA-E9-A1RC NOL11 SNP Splice_site 17 65714064 A C 4 79 BRCA TCGA-E9-A1RC TBCD SNP Missense_Mutation 17 80730364 G T 34 87 BRCA TCGA-E9-A1RC OR10H5 SNP Silent 19 15904918 C T 30 59 BRCA TCGA-E9-A1RC ZNF555 SNP Missense_Mutation 19 2852514 G T 36 55 BRCA TCGA-E9-A1RC TTN SNP Missense_Mutation 2 179458370 G A 39 62 BRCA TCGA-E9-A1RC TTN SNP Missense_Mutation 2 179536934 T C 62 58 BRCA TCGA-E9-A1RC SLC40A1 SNP Nonsense_Mutation 2 190437615 A C 13 77 BRCA TCGA-E9-A1RC ZAP70 SNP Missense_Mutation 2 98354503 C T 27 72 BRCA TCGA-E9-A1RC COMMD7 SNP Missense_Mutation 20 31315732 C T 28 62 BRCA TCGA-E9-A1RC DOK5 SNP Missense_Mutation 20 53208301 C T 27 65 BRCA TCGA-E9-A1RC CELSR1 SNP Silent 22 46763749 G T 43 57 BRCA TCGA-E9-A1RC ELF4 SNP Silent 23 129203349 G A 40 38 BRCA TCGA-E9-A1RC BGN SNP Silent 23 152770766 C T 23 12 BRCA TCGA-E9-A1RC CNKSR2 SNP Missense_Mutation 23 21450902 C A 25 81 BRCA TCGA-E9-A1RC PHC3 SNP Silent 3 169889120 T C 61 48 BRCA TCGA-E9-A1RC PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E9-A1RC MUC20 SNP Missense_Mutation 3 195460039 G A 38 35 BRCA TCGA-E9-A1RC MUC4 SNP Silent 3 195505944 C T 17 33 BRCA TCGA-E9-A1RC MUC4 SNP Missense_Mutation 3 195515052 G C 40 44 BRCA TCGA-E9-A1RC PRKCD SNP Splice_Site 3 53223073 G C 33 99 BRCA TCGA-E9-A1RC TLR3 SNP Missense_Mutation 4 187004668 G C 44 50 BRCA TCGA-E9-A1RC BMPR1B SNP Missense_Mutation 4 96052464 T C 58 81 BRCA TCGA-E9-A1RC TRPC7 SNP Missense_Mutation 5 135651308 C T 27 100 BRCA TCGA-E9-A1RC MDC1 SNP Missense_Mutation 6 30671982 G A 33 54 BRCA TCGA-E9-A1RC FAM135B SNP Nonsense_Mutation 8 139164077 T A 64 50 BRCA TCGA-E9-A1RC XPO7 SNP Missense_Mutation 8 21837630 A T 9 57 BRCA TCGA-E9-A1RC MED22 SNP Missense_Mutation 9 136211091 C T 27 77 BRCA TCGA-E9-A1RD IQCC SNP Missense_Mutation 1 32673075 C G 17 54 BRCA TCGA-E9-A1RD MBD6 SNP Splice_Site 12 57921444 G C 44 77 BRCA TCGA-E9-A1RD ZFP106 SNP Missense_Mutation 15 42713309 C A 21 100 BRCA TCGA-E9-A1RD GOLGA6A SNP Missense_Mutation 15 74364639 G C 48 31 BRCA TCGA-E9-A1RD TBC1D3 SNP Silent 17 36340138 A G 2 57 BRCA TCGA-E9-A1RD TOP2A SNP Missense_Mutation 17 38556618 T C 54 92 BRCA TCGA-E9-A1RD ABCA6 SNP Silent 17 67081186 C T 31 46 BRCA TCGA-E9-A1RD KCNJ14 SNP Silent 19 48967593 C T 23 17 BRCA TCGA-E9-A1RD ZNF814 SNP Missense_Mutation 19 58386210 G A 45 59 BRCA TCGA-E9-A1RD INSR SNP Missense_Mutation 19 7141753 C G 30 97 BRCA TCGA-E9-A1RD TIMM44 SNP Missense_Mutation 19 7992179 G A 38 71 BRCA TCGA-E9-A1RD SCN2A SNP Missense_Mutation 2 166152440 G A 33 74 BRCA TCGA-E9-A1RD PCNT SNP Missense_Mutation 21 47808670 G T 41 62 BRCA TCGA-E9-A1RD F8 SNP Missense_Mutation 23 154133122 G C 36 63 BRCA TCGA-E9-A1RD PIK3CA SNP Missense_Mutation 3 178936082 G A 45 98 BRCA TCGA-E9-A1RD FAT4 SNP Silent 4 126336088 G A 42 27 BRCA TCGA-E9-A1RD FBXL5 SNP Missense_Mutation 4 15629638 G A 45 81 BRCA TCGA-E9-A1RD BEND4 SNP Nonsense_Mutation 4 42145871 C A 31 86 BRCA TCGA-E9-A1RD PCDHGA5 SNP Missense_Mutation 5 140745887 G A 40 53 BRCA TCGA-E9-A1RD C5orf45 SNP Missense_Mutation 5 179280390 C T 20 79 BRCA TCGA-E9-A1RD MAP3K1 INS Frame_Shift_Ins 5 56177410 - T 28 77 BRCA TCGA-E9-A1RD MAP3K1 INS Frame_Shift_Ins 5 56178459 - A 49 56 BRCA TCGA-E9-A1RD VCAN SNP Silent 5 82850848 C T 25 53 BRCA TCGA-E9-A1RD TMEM242 SNP Silent 6 157739784 G A 33 62 BRCA TCGA-E9-A1RD PRSS35 SNP Missense_Mutation 6 84233305 G A 38 47 BRCA TCGA-E9-A1RD DTX2 SNP Missense_Mutation 7 76126735 C T 30 72 BRCA TCGA-E9-A1RD SLC25A32 SNP Missense_Mutation 8 104419920 G C 45 99 BRCA TCGA-E9-A1RE SPTA1 SNP Missense_Mutation 1 158627369 G T 41 60 BRCA TCGA-E9-A1RE PRRX1 SNP Missense_Mutation 1 170695530 C T 27 93 BRCA TCGA-E9-A1RE DNM3 SNP Splice_site 1 171956945 G A 39 97 BRCA TCGA-E9-A1RE QSOX1 SNP Missense_Mutation 1 180135688 T A 55 71 BRCA TCGA-E9-A1RE NCF2 SNP Nonsense_Mutation 1 183556058 G A 40 60 BRCA TCGA-E9-A1RE USP1 SNP Nonsense_Mutation 1 62910497 C T 21 82 BRCA TCGA-E9-A1RE UNC5B SNP Missense_Mutation 10 73044530 C A 28 76 BRCA TCGA-E9-A1RE MUC2 SNP Silent 11 1093245 A T 5 39 BRCA TCGA-E9-A1RE OR52K1 SNP Nonsense_Mutation 11 4510284 C T 21 49 BRCA TCGA-E9-A1RE GRASP SNP Missense_Mutation 12 52407973 C T 27 75 BRCA TCGA-E9-A1RE RDH16 SNP Silent 12 57351117 G A 36 61 BRCA TCGA-E9-A1RE TUBGCP3 SNP Missense_Mutation 13 113140381 C T 31 95 BRCA TCGA-E9-A1RE TRPC4 SNP Splice_Site 13 38213437 C G 32 99 BRCA TCGA-E9-A1RE RYR3 SNP Missense_Mutation 15 33872233 C A 18 85 BRCA TCGA-E9-A1RE PLA2G4D SNP Missense_Mutation 15 42374005 C T 26 50 BRCA TCGA-E9-A1RE HS3ST4 SNP Missense_Mutation 16 26147331 A C 1 64 BRCA TCGA-E9-A1RE ITGA3 SNP Missense_Mutation 17 48166523 A G 6 73 BRCA TCGA-E9-A1RE GRIN2C SNP Silent 17 72846369 G A 38 45 BRCA TCGA-E9-A1RE MAST1 SNP Missense_Mutation 19 12962989 G A 43 97 BRCA TCGA-E9-A1RE STX10 SNP Missense_Mutation 19 13255448 G C 47 58 BRCA TCGA-E9-A1RE SLC7A9 SNP Silent 19 33355671 G A 45 53 BRCA TCGA-E9-A1RE H2BFM SNP Missense_Mutation 23 103294608 T C 50 48 BRCA TCGA-E9-A1RE COL4A6 SNP Silent 23 107422068 G A 40 51 BRCA TCGA-E9-A1RE FAM70A SNP Missense_Mutation 23 119421019 T C 62 73 BRCA TCGA-E9-A1RE DMD SNP Missense_Mutation 23 31514996 A C 6 68 BRCA TCGA-E9-A1RE DMD SNP Missense_Mutation 23 32366618 G T 46 88 BRCA TCGA-E9-A1RE GNL3L SNP Silent 23 54569444 G A 41 51 BRCA TCGA-E9-A1RE BOC SNP Missense_Mutation 3 112969456 G A 42 94 BRCA TCGA-E9-A1RE KY SNP Silent 3 134323234 C T 26 56 BRCA TCGA-E9-A1RE PIK3CA SNP Missense_Mutation 3 178916924 C T 21 97 BRCA TCGA-E9-A1RE IL17RE SNP Silent 3 9956194 T C 51 49 BRCA TCGA-E9-A1RE FBN2 SNP Missense_Mutation 5 127685051 G C 39 57 BRCA TCGA-E9-A1RE ADAMTS19 SNP Nonsense_Mutation 5 129030517 C T 31 82 BRCA TCGA-E9-A1RE PCDHB8 SNP Missense_Mutation 5 140558070 C A 27 51 BRCA TCGA-E9-A1RE ATP10B SNP Nonsense_Mutation 5 160033805 G A 38 73 BRCA TCGA-E9-A1RE FAM153C SNP Missense_Mutation 5 177468759 C T 29 46 BRCA TCGA-E9-A1RE MRPS27 SNP Missense_Mutation 5 71616019 C T 25 42 BRCA TCGA-E9-A1RE SLC22A1 SNP Missense_Mutation 6 160560827 C T 23 74 BRCA TCGA-E9-A1RE TRIP6 SNP Missense_Mutation 7 100470878 G A 38 88 BRCA TCGA-E9-A1RE CTTNBP2 SNP Missense_Mutation 7 117375356 G A 37 86 BRCA TCGA-E9-A1RE PTPRZ1 SNP Silent 7 121695126 C T 32 57 BRCA TCGA-E9-A1RE PKHD1L1 SNP Missense_Mutation 8 110527447 T C 53 81 BRCA TCGA-E9-A1RE ADRA1A SNP Silent 8 26722154 G A 39 42 BRCA TCGA-E9-A1RE FAM75D1 SNP Missense_Mutation 9 84607812 G T 45 41 BRCA TCGA-E9-A1RE PTPRD SNP Missense_Mutation 9 8504378 A G 12 68 BRCA TCGA-E9-A1RE SECISBP2 SNP Missense_Mutation 9 91934622 A G 4 48 BRCA TCGA-E9-A1RF TBX15 SNP Missense_Mutation 1 119467310 T C 63 79 BRCA TCGA-E9-A1RF POLR3GL SNP Missense_Mutation 1 145457582 C A 28 70 BRCA TCGA-E9-A1RF HIST2H2AC SNP Silent 1 149858554 G A 35 50 BRCA TCGA-E9-A1RF CGN SNP Silent 1 151492732 C T 24 69 BRCA TCGA-E9-A1RF RPTN SNP Missense_Mutation 1 152128108 C G 32 53 BRCA TCGA-E9-A1RF SCYL3 SNP Silent 1 169825046 C T 21 55 BRCA TCGA-E9-A1RF HMCN1 SNP Silent 1 185892721 C A 28 55 BRCA TCGA-E9-A1RF OPTC SNP Missense_Mutation 1 203468972 C T 26 69 BRCA TCGA-E9-A1RF NSL1 SNP Missense_Mutation 1 212912896 C G 30 56 BRCA TCGA-E9-A1RF OBSCN SNP Silent 1 228521396 C A 29 54 BRCA TCGA-E9-A1RF GNPAT SNP Missense_Mutation 1 231411054 C T 28 90 BRCA TCGA-E9-A1RF FMN2 SNP Missense_Mutation 1 240494024 C T 21 100 BRCA TCGA-E9-A1RF TNFRSF25 SNP Missense_Mutation 1 6522132 G T 43 50 BRCA TCGA-E9-A1RF GBP4 SNP Missense_Mutation 1 89658761 G C 34 50 BRCA TCGA-E9-A1RF VAX1 SNP Silent 10 118891744 C G 22 51 BRCA TCGA-E9-A1RF GATA3 INS Frame_Shift_Ins 10 8111471 - T 20 78 BRCA TCGA-E9-A1RF DNTT SNP Missense_Mutation 10 98092226 G A 40 49 BRCA TCGA-E9-A1RF MUC5B SNP Missense_Mutation 11 1268294 C A 20 58 BRCA TCGA-E9-A1RF MUC5B SNP Silent 11 1271076 C T 27 52 BRCA TCGA-E9-A1RF KIAA1549L SNP Missense_Mutation 11 33581421 T C 52 89 BRCA TCGA-E9-A1RF NUP160 SNP Silent 11 47869781 G C 33 50 BRCA TCGA-E9-A1RF PGA5 SNP Missense_Mutation 11 61017398 G C 34 53 BRCA TCGA-E9-A1RF UHRF1BP1L SNP Missense_Mutation 12 100444935 G C 44 48 BRCA TCGA-E9-A1RF ANAPC7 SNP Missense_Mutation 12 110815309 C T 19 98 BRCA TCGA-E9-A1RF HPD SNP Missense_Mutation 12 122277893 G A 39 87 BRCA TCGA-E9-A1RF TMEM132D SNP Missense_Mutation 12 129558828 C A 22 81 BRCA TCGA-E9-A1RF LRTM2 SNP Missense_Mutation 12 1940299 C A 26 69 BRCA TCGA-E9-A1RF SLC6A13 SNP Missense_Mutation 12 368960 G A 33 52 BRCA TCGA-E9-A1RF IRAK4 SNP Missense_Mutation 12 44176271 C A 32 98 BRCA TCGA-E9-A1RF IKZF4 SNP Missense_Mutation 12 56418866 G T 36 59 BRCA TCGA-E9-A1RF RBP5 SNP Silent 12 7280866 G A 44 58 BRCA TCGA-E9-A1RF BIVM SNP Missense_Mutation 13 103459852 G T 42 78 BRCA TCGA-E9-A1RF ABHD13 SNP Missense_Mutation 13 108882099 C G 20 100 BRCA TCGA-E9-A1RF CKB SNP Missense_Mutation 14 103986486 G A 38 64 BRCA TCGA-E9-A1RF KLC1 SNP Silent 14 104040485 C T 26 55 BRCA TCGA-E9-A1RF SPTSSA SNP Missense_Mutation 14 34904481 C T 26 84 BRCA TCGA-E9-A1RF C14orf39 SNP Missense_Mutation 14 60908795 T G 50 54 BRCA TCGA-E9-A1RF AHSA1 SNP Missense_Mutation 14 77929072 A G 4 51 BRCA TCGA-E9-A1RF PIGB SNP Silent 15 55633010 G C 46 51 BRCA TCGA-E9-A1RF C16orf45 SNP Missense_Mutation 16 15677024 A C 9 86 BRCA TCGA-E9-A1RF PRKCB SNP Missense_Mutation 16 24124299 A T 3 88 BRCA TCGA-E9-A1RF SRCAP SNP Nonsense_Mutation 16 30745237 G T 41 98 BRCA TCGA-E9-A1RF CDH8 SNP Missense_Mutation 16 61823301 C G 29 98 BRCA TCGA-E9-A1RF WDR24 INS Frame_Shift_Ins 16 735108 - A 21 71 BRCA TCGA-E9-A1RF BCAR1 SNP Missense_Mutation 16 75267782 T C 51 70 BRCA TCGA-E9-A1RF CTU2 SNP Silent 16 88781476 G A 38 24 BRCA TCGA-E9-A1RF TMEM186 SNP Silent 16 8890208 C T 29 55 BRCA TCGA-E9-A1RF MYH8 SNP Missense_Mutation 17 10318692 C G 30 97 BRCA TCGA-E9-A1RF NCOR1 SNP Nonsense_Mutation 17 15989636 G T 45 92 BRCA TCGA-E9-A1RF RAD51D SNP Missense_Mutation 17 33443953 C T 30 46 BRCA TCGA-E9-A1RF KLHL10 SNP Missense_Mutation 17 40004264 C G 22 98 BRCA TCGA-E9-A1RF FAM117A SNP Missense_Mutation 17 47793671 G A 33 87 BRCA TCGA-E9-A1RF LPIN2 SNP Missense_Mutation 18 2937960 C G 18 91 BRCA TCGA-E9-A1RF CDH7 SNP Silent 18 63491905 G A 36 48 BRCA TCGA-E9-A1RF COMP SNP Missense_Mutation 19 18899673 G A 43 71 BRCA TCGA-E9-A1RF SUGP2 SNP Missense_Mutation 19 19112432 G A 41 79 BRCA TCGA-E9-A1RF MLL4 SNP Missense_Mutation 19 36220105 G A 40 73 BRCA TCGA-E9-A1RF NUMBL SNP Missense_Mutation 19 41175875 G C 33 65 BRCA TCGA-E9-A1RF ZNF417 SNP Missense_Mutation 19 58420121 C G 17 25 BRCA TCGA-E9-A1RF ZNF606 SNP Missense_Mutation 19 58489955 T G 59 87 BRCA TCGA-E9-A1RF ELAVL1 SNP Silent 19 8032481 T G 54 62 BRCA TCGA-E9-A1RF DPP10 SNP Missense_Mutation 2 116066924 C G 18 95 BRCA TCGA-E9-A1RF GPR17 SNP Missense_Mutation 2 128407626 C A 22 49 BRCA TCGA-E9-A1RF NCKAP5 SNP Missense_Mutation 2 133483301 G T 42 61 BRCA TCGA-E9-A1RF YSK4 SNP Missense_Mutation 2 135756375 G T 48 40 BRCA TCGA-E9-A1RF STAM2 SNP Silent 2 152977211 C T 21 67 BRCA TCGA-E9-A1RF TTN SNP Missense_Mutation 2 179438827 G T 47 100 BRCA TCGA-E9-A1RF NCKAP1 SNP Missense_Mutation 2 183843584 C A 29 100 BRCA TCGA-E9-A1RF MDH1B SNP Missense_Mutation 2 207625725 C A 17 85 BRCA TCGA-E9-A1RF TNS1 SNP Silent 2 218745658 G A 40 32 BRCA TCGA-E9-A1RF DOCK10 SNP Silent 2 225652079 C T 20 53 BRCA TCGA-E9-A1RF SP140L SNP Silent 2 231266471 G T 44 50 BRCA TCGA-E9-A1RF CTNNA2 SNP Missense_Mutation 2 80773158 A C 6 93 BRCA TCGA-E9-A1RF RETSAT SNP Missense_Mutation 2 85570908 G C 36 55 BRCA TCGA-E9-A1RF KIDINS220 SNP Missense_Mutation 2 8919137 G A 38 76 BRCA TCGA-E9-A1RF KIF16B SNP Missense_Mutation 20 16354954 T C 55 47 BRCA TCGA-E9-A1RF AHCY SNP Splice_Site 20 32873245 C A 18 96 BRCA TCGA-E9-A1RF SEMG2 SNP Missense_Mutation 20 43851891 C G 29 44 BRCA TCGA-E9-A1RF PRPF6 SNP Missense_Mutation 20 62626765 G A 42 85 BRCA TCGA-E9-A1RF LIPI SNP Missense_Mutation 21 15554120 G T 40 77 BRCA TCGA-E9-A1RF DSCAM SNP Silent 21 41465724 G A 38 54 BRCA TCGA-E9-A1RF KRTAP10-5 SNP Missense_Mutation 21 45999699 G A 39 53 BRCA TCGA-E9-A1RF RFPL2 SNP Nonsense_Mutation 22 32589028 G T 34 51 BRCA TCGA-E9-A1RF XPNPEP3 SNP Missense_Mutation 22 41253216 G C 44 61 BRCA TCGA-E9-A1RF NDUFA6 SNP Missense_Mutation 22 42483141 G A 40 67 BRCA TCGA-E9-A1RF CXorf57 SNP Missense_Mutation 23 105879795 G T 36 55 BRCA TCGA-E9-A1RF ASB11 SNP Missense_Mutation 23 15306047 G A 38 73 BRCA TCGA-E9-A1RF F8 SNP Missense_Mutation 23 154133160 C A 20 64 BRCA TCGA-E9-A1RF RAI2 SNP Missense_Mutation 23 17819682 G T 44 82 BRCA TCGA-E9-A1RF USP9X SNP Missense_Mutation 23 41043849 C G 20 100 BRCA TCGA-E9-A1RF KDM6A SNP Missense_Mutation 23 44913106 G C 33 96 BRCA TCGA-E9-A1RF DLG3 SNP Missense_Mutation 23 69672527 C G 26 58 BRCA TCGA-E9-A1RF ATP6V1A SNP Missense_Mutation 3 113524322 C T 31 63 BRCA TCGA-E9-A1RF PLXND1 SNP Missense_Mutation 3 129286352 G A 39 86 BRCA TCGA-E9-A1RF ATP13A3 SNP Missense_Mutation 3 194151723 C T 19 100 BRCA TCGA-E9-A1RF MYD88 SNP Silent 3 38182756 C G 21 70 BRCA TCGA-E9-A1RF MOBP SNP Missense_Mutation 3 39543701 T G 57 49 BRCA TCGA-E9-A1RF PALLD SNP Missense_Mutation 4 169632939 C T 19 69 BRCA TCGA-E9-A1RF LETM1 SNP Silent 4 1834627 A G 1 60 BRCA TCGA-E9-A1RF TLR3 SNP Missense_Mutation 4 187004105 T C 49 71 BRCA TCGA-E9-A1RF GNPDA2 SNP Missense_Mutation 4 44709931 T C 49 87 BRCA TCGA-E9-A1RF GABRA2 SNP Missense_Mutation 4 46264108 G C 45 67 BRCA TCGA-E9-A1RF KIAA0232 SNP Silent 4 6863768 A T 15 65 BRCA TCGA-E9-A1RF ADAMTS3 SNP Missense_Mutation 4 73414439 A T 1 92 BRCA TCGA-E9-A1RF PRDM6 SNP Missense_Mutation 5 122491625 A T 2 50 BRCA TCGA-E9-A1RF ZNF354A SNP Missense_Mutation 5 178154017 C G 24 52 BRCA TCGA-E9-A1RF CDH9 SNP Silent 5 26890044 G A 48 34 BRCA TCGA-E9-A1RF ZSWIM6 SNP Missense_Mutation 5 60839621 A T 14 77 BRCA TCGA-E9-A1RF GRIK2 SNP Missense_Mutation 6 102483396 G C 47 100 BRCA TCGA-E9-A1RF PDE10A SNP Missense_Mutation 6 165792776 A G 4 80 BRCA TCGA-E9-A1RF HIST1H4L SNP Missense_Mutation 6 27841034 C T 21 82 BRCA TCGA-E9-A1RF ELOVL5 SNP Nonsense_Mutation 6 53140987 G C 45 82 BRCA TCGA-E9-A1RF PHIP SNP Missense_Mutation 6 79725444 G T 34 95 BRCA TCGA-E9-A1RF DGKI SNP Silent 7 137293718 G C 46 52 BRCA TCGA-E9-A1RF MMD2 SNP Silent 7 4947132 G A 40 48 BRCA TCGA-E9-A1RF SAMD9 SNP Missense_Mutation 7 92731415 G C 46 47 BRCA TCGA-E9-A1RF SMURF1 SNP Missense_Mutation 7 98638117 G T 36 100 BRCA TCGA-E9-A1RF ADCY8 SNP Missense_Mutation 8 131916201 G C 41 88 BRCA TCGA-E9-A1RF TMEM64 SNP Missense_Mutation 8 91638033 T A 62 80 BRCA TCGA-E9-A1RF CDK5RAP2 SNP Missense_Mutation 9 123201828 G C 43 60 BRCA TCGA-E9-A1RF GARNL3 SNP Splice_Site 9 130095401 G C 36 92 BRCA TCGA-E9-A1RF IFNA2 SNP Missense_Mutation 9 21385064 G T 33 53 BRCA TCGA-E9-A1RF FAM75A6 SNP Missense_Mutation 9 43630592 C A 22 53 BRCA TCGA-E9-A1RF TRPM3 SNP Missense_Mutation 9 73458041 C A 17 100 BRCA TCGA-E9-A1RG PTCHD2 SNP Missense_Mutation 1 11594443 G A 40 51 BRCA TCGA-E9-A1RG MAB21L3 SNP Splice_Site 1 116663694 G T 44 84 BRCA TCGA-E9-A1RG VPS13D SNP Missense_Mutation 1 12378344 C T 30 99 BRCA TCGA-E9-A1RG BTF3L4 INS Frame_Shift_Ins 1 52530570 - A 53 93 BRCA TCGA-E9-A1RG H2AFY2 SNP Missense_Mutation 10 71835425 G A 39 100 BRCA TCGA-E9-A1RG CCDC73 SNP Missense_Mutation 11 32675581 T G 52 52 BRCA TCGA-E9-A1RG GANAB SNP Silent 11 62394094 T G 55 47 BRCA TCGA-E9-A1RG SUV420H1 SNP Missense_Mutation 11 67925891 G A 38 28 BRCA TCGA-E9-A1RG ACACB SNP Silent 12 109654462 G T 48 52 BRCA TCGA-E9-A1RG KIAA1551 SNP Missense_Mutation 12 32137328 T C 59 46 BRCA TCGA-E9-A1RG PCID2 SNP Silent 13 113838712 T C 51 26 BRCA TCGA-E9-A1RG SUPT16H SNP Missense_Mutation 14 21834653 C A 30 96 BRCA TCGA-E9-A1RG CARM1 SNP Missense_Mutation 19 11027383 C T 32 98 BRCA TCGA-E9-A1RG ZNF671 SNP Missense_Mutation 19 58232276 C G 30 71 BRCA TCGA-E9-A1RG OSGEPL1 SNP Missense_Mutation 2 190620045 T C 49 62 BRCA TCGA-E9-A1RG MAT2A SNP Missense_Mutation 2 85769862 C G 32 73 BRCA TCGA-E9-A1RG MID1 SNP Missense_Mutation 23 10491176 C G 30 93 BRCA TCGA-E9-A1RG IGSF11 SNP Silent 3 118647513 G A 40 49 BRCA TCGA-E9-A1RG TSEN2 SNP Missense_Mutation 3 12531481 A G 16 75 BRCA TCGA-E9-A1RG ACAD11 SNP Missense_Mutation 3 132277850 G A 38 52 BRCA TCGA-E9-A1RG RNF168 SNP Missense_Mutation 3 196199594 A G 16 45 BRCA TCGA-E9-A1RG DHX30 SNP Nonsense_Mutation 3 47882665 C G 29 57 BRCA TCGA-E9-A1RG LAMB2 SNP Nonsense_Mutation 3 49163267 G A 45 100 BRCA TCGA-E9-A1RG ANK2 SNP Missense_Mutation 4 114203939 A C 2 71 BRCA TCGA-E9-A1RG MFSD8 SNP Missense_Mutation 4 128886286 C T 21 73 BRCA TCGA-E9-A1RG ZNF330 SNP Splice_Site 4 142150852 G T 44 100 BRCA TCGA-E9-A1RG FSTL5 SNP Missense_Mutation 4 162680584 C T 29 83 BRCA TCGA-E9-A1RG PCDHA2 SNP Silent 5 140174750 G A 40 49 BRCA TCGA-E9-A1RG PCDHGA1 SNP Silent 5 140711823 G A 36 57 BRCA TCGA-E9-A1RG ODZ2 SNP Missense_Mutation 5 167645851 C A 24 88 BRCA TCGA-E9-A1RG CKMT2 SNP Missense_Mutation 5 80553653 G A 37 100 BRCA TCGA-E9-A1RG ARRDC3 SNP Missense_Mutation 5 90670780 T C 49 93 BRCA TCGA-E9-A1RG LAMB4 SNP Missense_Mutation 7 107684275 C G 22 49 BRCA TCGA-E9-A1RG ABCA13 SNP Missense_Mutation 7 48314170 G C 35 54 BRCA TCGA-E9-A1RG C7orf26 SNP Nonsense_Mutation 7 6634119 C A 20 94 BRCA TCGA-E9-A1RH OTUD7B SNP Missense_Mutation 1 149943095 C A 20 59 BRCA TCGA-E9-A1RH RPTN SNP Missense_Mutation 1 152129314 A C 16 56 BRCA TCGA-E9-A1RH ASH1L DEL In_Frame_Del 1 155449169 AGG - 15 48 BRCA TCGA-E9-A1RH PRRC2C SNP Missense_Mutation 1 171526725 C T 20 72 BRCA TCGA-E9-A1RH VASH2 SNP Nonsense_Mutation 1 213145986 G T 35 100 BRCA TCGA-E9-A1RH TGFBR3 SNP Silent 1 92185007 C T 23 15 BRCA TCGA-E9-A1RH CALHM3 SNP Missense_Mutation 10 105233294 G T 36 74 BRCA TCGA-E9-A1RH FAM45A SNP Silent 10 120871384 G C 45 60 BRCA TCGA-E9-A1RH NOC3L SNP Silent 10 96101465 G A 33 55 BRCA TCGA-E9-A1RH RFX4 SNP Missense_Mutation 12 107002600 C G 19 49 BRCA TCGA-E9-A1RH GOLGA3 SNP Missense_Mutation 12 133349744 C T 31 57 BRCA TCGA-E9-A1RH TMTC1 SNP Splice_Site 12 29669421 T G 53 86 BRCA TCGA-E9-A1RH CD163L1 SNP Silent 12 7531857 G A 46 62 BRCA TCGA-E9-A1RH DPPA3 SNP Silent 12 7867843 T C 57 48 BRCA TCGA-E9-A1RH FRY SNP Silent 13 32698787 T C 56 75 BRCA TCGA-E9-A1RH PCDH20 DEL Frame_Shift_Del 13 61986915 AACC - 1 48 BRCA TCGA-E9-A1RH DZIP1 SNP Silent 13 96293774 C A 27 51 BRCA TCGA-E9-A1RH LRRC16B SNP Missense_Mutation 14 24534925 G T 33 76 BRCA TCGA-E9-A1RH GPHN SNP Missense_Mutation 14 67147848 C A 32 88 BRCA TCGA-E9-A1RH SLC10A1 SNP Missense_Mutation 14 70252848 G T 41 69 BRCA TCGA-E9-A1RH ADAM20 SNP Missense_Mutation 14 70989500 C A 26 58 BRCA TCGA-E9-A1RH HERC2 SNP Missense_Mutation 15 28479350 C G 30 97 BRCA TCGA-E9-A1RH HERC1 SNP Silent 15 64067208 T C 51 52 BRCA TCGA-E9-A1RH IGDCC4 SNP Splice_site 15 65689327 T A 58 87 BRCA TCGA-E9-A1RH CASKIN1 SNP Missense_Mutation 16 2236791 C G 26 96 BRCA TCGA-E9-A1RH CCDC144B INS Splice_Site 17 18498059 - A 29 54 BRCA TCGA-E9-A1RH ULK2 SNP Missense_Mutation 17 19699015 G A 45 96 BRCA TCGA-E9-A1RH MAPT SNP Silent 17 44087762 C T 27 54 BRCA TCGA-E9-A1RH VPS53 SNP Missense_Mutation 17 556562 C T 22 96 BRCA TCGA-E9-A1RH GABARAP SNP Missense_Mutation 17 7144763 G A 33 69 BRCA TCGA-E9-A1RH RECQL5 SNP Missense_Mutation 17 73657754 C G 32 100 BRCA TCGA-E9-A1RH FHOD3 SNP Missense_Mutation 18 34298167 C T 23 55 BRCA TCGA-E9-A1RH SLC1A6 SNP Missense_Mutation 19 15073025 G A 37 56 BRCA TCGA-E9-A1RH FXYD3 SNP Splice_site 19 35614360 G C 45 58 BRCA TCGA-E9-A1RH ZNF577 SNP Silent 19 52381691 G T 33 53 BRCA TCGA-E9-A1RH ZNF551 SNP Missense_Mutation 19 58199270 C T 27 38 BRCA TCGA-E9-A1RH NCKAP5 SNP Missense_Mutation 2 133541010 G A 42 43 BRCA TCGA-E9-A1RH UBR3 SNP Missense_Mutation 2 170780651 A C 4 91 BRCA TCGA-E9-A1RH TTN SNP Missense_Mutation 2 179469856 T C 61 50 BRCA TCGA-E9-A1RH TTN SNP Missense_Mutation 2 179499514 G T 44 60 BRCA TCGA-E9-A1RH ORC2 SNP Nonsense_Mutation 2 201790582 C T 21 56 BRCA TCGA-E9-A1RH ZNF142 SNP Missense_Mutation 2 219513520 C T 32 74 BRCA TCGA-E9-A1RH STK25 SNP Missense_Mutation 2 242437657 G A 45 79 BRCA TCGA-E9-A1RH CD93 SNP Missense_Mutation 20 23065078 G C 33 51 BRCA TCGA-E9-A1RH LSM14B SNP Missense_Mutation 20 60706418 A T 3 63 BRCA TCGA-E9-A1RH PFKL SNP Nonsense_Mutation 21 45725274 C T 23 7 BRCA TCGA-E9-A1RH DGCR14 SNP Silent 22 19121847 C T 23 25 BRCA TCGA-E9-A1RH APOL3 SNP Missense_Mutation 22 36541561 C T 29 51 BRCA TCGA-E9-A1RH MAP7D2 SNP Missense_Mutation 23 20069029 G C 33 57 BRCA TCGA-E9-A1RH RBM10 SNP Missense_Mutation 23 47045972 G A 44 64 BRCA TCGA-E9-A1RH KDM5C SNP Silent 23 53247464 G A 45 76 BRCA TCGA-E9-A1RH QTRTD1 SNP Missense_Mutation 3 113795785 C T 26 98 BRCA TCGA-E9-A1RH ADCY5 SNP Silent 3 123051483 C T 19 24 BRCA TCGA-E9-A1RH PLS1 SNP Missense_Mutation 3 142430425 G A 35 59 BRCA TCGA-E9-A1RH PIK3CA DEL In_Frame_Del 3 178916920 GAACCA - 45 97 BRCA TCGA-E9-A1RH MUC4 SNP Silent 3 195507132 G A 40 71 BRCA TCGA-E9-A1RH TMEM115 SNP Missense_Mutation 3 50392784 G A 39 68 BRCA TCGA-E9-A1RH FLNB SNP Missense_Mutation 3 58087962 C G 23 71 BRCA TCGA-E9-A1RH C3orf32 SNP Missense_Mutation 3 8671361 C G 23 73 BRCA TCGA-E9-A1RH GALNTL6 DEL In_Frame_Del 4 173961139 AGA - 11 90 BRCA TCGA-E9-A1RH AMBN SNP Silent 4 71471931 A G 11 54 BRCA TCGA-E9-A1RH MMRN1 SNP Nonsense_Mutation 4 90857362 T A 63 80 BRCA TCGA-E9-A1RH HPGDS SNP Missense_Mutation 4 95239059 C A 28 77 BRCA TCGA-E9-A1RH CTNND2 SNP Missense_Mutation 5 11082867 C A 25 100 BRCA TCGA-E9-A1RH DMXL1 SNP Nonsense_Mutation 5 118500331 G A 47 87 BRCA TCGA-E9-A1RH PCDHB7 SNP Missense_Mutation 5 140553150 C G 31 73 BRCA TCGA-E9-A1RH KIAA0947 SNP Missense_Mutation 5 5465079 G A 34 46 BRCA TCGA-E9-A1RH LYRM4 SNP Missense_Mutation 6 5109694 T C 56 72 BRCA TCGA-E9-A1RH NAMPT SNP Nonsense_Mutation 7 105893543 G A 39 73 BRCA TCGA-E9-A1RH ZNF862 SNP Missense_Mutation 7 149559197 G T 41 68 BRCA TCGA-E9-A1RH TRGC1 SNP Silent 7 38305276 T G 64 44 BRCA TCGA-E9-A1RH PTK2 SNP Missense_Mutation 8 141756921 G C 34 59 BRCA TCGA-E9-A1RH CHMP7 SNP Missense_Mutation 8 23114072 C T 19 65 BRCA TCGA-E9-A1RH VCPIP1 SNP Missense_Mutation 8 67546842 G A 42 77 BRCA TCGA-E9-A1RH ATP6V0D2 SNP Nonsense_Mutation 8 87153720 G T 45 83 BRCA TCGA-E9-A1RH RC3H2 SNP Silent 9 125652667 C T 28 64 BRCA TCGA-E9-A1RH BNC2 SNP Missense_Mutation 9 16727800 G C 47 100 BRCA TCGA-E9-A1RH GRHPR SNP Missense_Mutation 9 37422820 C T 23 51 BRCA TCGA-E9-A1RI FLG SNP Silent 1 152277093 C T 26 45 BRCA TCGA-E9-A1RI ZBTB40 SNP Silent 1 22835660 C A 30 54 BRCA TCGA-E9-A1RI ZMYM2 SNP Missense_Mutation 13 20625633 G A 47 84 BRCA TCGA-E9-A1RI ACSF3 SNP Missense_Mutation 16 89178629 C T 27 75 BRCA TCGA-E9-A1RI TMEM97 SNP Silent 17 26653645 G C 48 42 BRCA TCGA-E9-A1RI TIMM44 SNP Silent 19 7999109 G A 45 51 BRCA TCGA-E9-A1RI PRODH INS Frame_Shift_Ins 22 18909913 - T 20 68 BRCA TCGA-E9-A1RI KIAA2022 SNP Silent 23 73961191 G T 43 46 BRCA TCGA-E9-A1RI CSTA SNP Silent 3 122060396 C T 19 37 BRCA TCGA-E9-A1RI ACTRT3 SNP Silent 3 169487258 G T 45 60 BRCA TCGA-E9-A1RI PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA TCGA-E9-A1RI GPR15 SNP Silent 3 98251078 G A 45 56 BRCA TCGA-E9-A1RI CTAGE9 SNP Missense_Mutation 6 132030507 G A 44 NaN BRCA TCGA-E9-A1RI CNTLN SNP Missense_Mutation 9 17466011 G T 33 70 BRCA TCGA-E9-A226 GOLT1A SNP Splice_Site 1 204172023 C T 19 93 BRCA TCGA-E9-A226 SLC30A10 SNP Missense_Mutation 1 220088901 C T 27 34 BRCA TCGA-E9-A226 LRRTM3 SNP Missense_Mutation 10 68857462 G C 33 81 BRCA TCGA-E9-A226 UBE4A SNP Missense_Mutation 11 118255404 T G 50 93 BRCA TCGA-E9-A226 SLC37A2 SNP Missense_Mutation 11 124949049 C T 29 59 BRCA TCGA-E9-A226 CEP57 INS Frame_Shift_Ins 11 95561001 - T 32 61 BRCA TCGA-E9-A226 SLC17A8 SNP Silent 12 100795586 C A 22 45 BRCA TCGA-E9-A226 POLE2 SNP Silent 14 50118020 A T 2 51 BRCA TCGA-E9-A226 IQGAP1 DEL Frame_Shift_Del 15 90969467 AAAT - 1 89 BRCA TCGA-E9-A226 LLGL2 SNP Silent 17 73566549 G A 41 52 BRCA TCGA-E9-A226 TP53 DEL Frame_Shift_Del 17 7578464 GGGTGCCGGGCGG - 39 53 BRCA TCGA-E9-A226 EPHX3 SNP Missense_Mutation 19 15338906 A G 9 51 BRCA TCGA-E9-A226 KCNJ14 SNP Missense_Mutation 19 48967521 C G 32 83 BRCA TCGA-E9-A226 NOSIP SNP Silent 19 50059664 G A 37 29 BRCA TCGA-E9-A226 ZNF347 SNP Nonsense_Mutation 19 53643755 G A 45 50 BRCA TCGA-E9-A226 LAIR2 SNP Missense_Mutation 19 55019321 G A 46 47 BRCA TCGA-E9-A226 SPOPL SNP Missense_Mutation 2 139316712 G T 33 100 BRCA TCGA-E9-A226 WIPF1 SNP Missense_Mutation 2 175446104 C G 29 98 BRCA TCGA-E9-A226 TTN SNP Silent 2 179640219 G A 33 55 BRCA TCGA-E9-A226 DUSP19 SNP Missense_Mutation 2 183943684 T C 52 91 BRCA TCGA-E9-A226 COL6A3 SNP Silent 2 238253836 G A 38 38 BRCA TCGA-E9-A226 RRP1 SNP Silent 21 45222219 G A 33 51 BRCA TCGA-E9-A226 CNGA2 SNP Missense_Mutation 23 150912869 C T 27 58 BRCA TCGA-E9-A226 PIK3CA SNP Missense_Mutation 3 178921553 T A 51 69 BRCA TCGA-E9-A226 ZNF608 SNP Missense_Mutation 5 123982628 G A 37 78 BRCA TCGA-E9-A226 PCDHGA3 SNP Missense_Mutation 5 140725783 C T 31 81 BRCA TCGA-E9-A226 MXD3 DEL Frame_Shift_Del 5 176737446 CGGCG - 19 69 BRCA TCGA-E9-A226 PLEKHG1 SNP Missense_Mutation 6 151152648 C G 29 74 BRCA TCGA-E9-A226 HIST1H3B SNP Missense_Mutation 6 26032071 C G 31 98 BRCA TCGA-E9-A226 WDR60 SNP Missense_Mutation 7 158734770 A G 2 47 BRCA TCGA-E9-A226 AKAP9 SNP Silent 7 91718998 T C 53 46 BRCA TCGA-E9-A226 ZFAT SNP Silent 8 135614282 C A 25 52 BRCA TCGA-E9-A226 TACC1 SNP Silent 8 38693781 C T 23 37 BRCA TCGA-E9-A226 SGK3 SNP Missense_Mutation 8 67716646 C A 30 93 BRCA TCGA-E9-A226 FAM154A SNP Silent 9 19032889 G A 33 70 BRCA TCGA-E9-A226 RMI1 SNP Missense_Mutation 9 86616967 C A 30 49 BRCA TCGA-E9-A227 MED19 INS Frame_Shift_Ins 11 57472466 - C 34 53 BRCA TCGA-E9-A227 TBC1D4 SNP Missense_Mutation 13 75884201 C T 30 96 BRCA TCGA-E9-A227 ATP10A SNP Missense_Mutation 15 25966903 G C 48 83 BRCA TCGA-E9-A227 CTCF SNP Missense_Mutation 16 67645934 C G 21 99 BRCA TCGA-E9-A227 MARCH10 SNP Missense_Mutation 17 60865932 C T 32 51 BRCA TCGA-E9-A227 DNAH2 SNP Missense_Mutation 17 7708590 G C 33 62 BRCA TCGA-E9-A227 MAGEC3 SNP Silent 23 140983249 G A 39 42 BRCA TCGA-E9-A227 CHST2 SNP Silent 3 142840438 G A 40 25 BRCA TCGA-E9-A227 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E9-A227 FBXL7 SNP Missense_Mutation 5 15928343 C T 23 87 BRCA TCGA-E9-A227 GPR98 SNP Nonsense_Mutation 5 89948176 C T 23 63 BRCA TCGA-E9-A227 CLIC3 SNP Silent 9 139889217 C T 31 46 BRCA TCGA-E9-A228 CASZ1 SNP Missense_Mutation 1 10709343 C T 27 95 BRCA TCGA-E9-A228 AMPD2 SNP Missense_Mutation 1 110168296 C T 23 96 BRCA TCGA-E9-A228 MTOR SNP Missense_Mutation 1 11294317 C G 29 62 BRCA TCGA-E9-A228 NME7 SNP Missense_Mutation 1 169279296 C T 32 78 BRCA TCGA-E9-A228 SLC35F3 SNP Silent 1 234041449 G A 41 54 BRCA TCGA-E9-A228 NID1 SNP Missense_Mutation 1 236156947 G A 39 81 BRCA TCGA-E9-A228 VPS26A SNP Missense_Mutation 10 70917832 G A 33 100 BRCA TCGA-E9-A228 DHX37 SNP Missense_Mutation 12 125449009 C A 21 99 BRCA TCGA-E9-A228 PPP1R12A SNP Silent 12 80199488 C T 23 50 BRCA TCGA-E9-A228 MYF5 SNP Missense_Mutation 12 81111126 G A 38 100 BRCA TCGA-E9-A228 TOX4 SNP Nonsense_Mutation 14 21963403 C T 29 96 BRCA TCGA-E9-A228 STXBP6 SNP Silent 14 25288273 G A 38 50 BRCA TCGA-E9-A228 DNAL1 SNP Missense_Mutation 14 74156135 A G 4 93 BRCA TCGA-E9-A228 PIF1 SNP Silent 15 65114690 G A 45 66 BRCA TCGA-E9-A228 IREB2 SNP Missense_Mutation 15 78783006 T G 56 51 BRCA TCGA-E9-A228 VWA3A SNP Missense_Mutation 16 22152977 C T 32 54 BRCA TCGA-E9-A228 TRIM37 SNP Nonsense_Mutation 17 57126638 G T 34 43 BRCA TCGA-E9-A228 BRIP1 SNP Missense_Mutation 17 59871074 C T 27 52 BRCA TCGA-E9-A228 STRADA SNP Missense_Mutation 17 61788157 T C 49 77 BRCA TCGA-E9-A228 SALL3 SNP Missense_Mutation 18 76754213 G A 46 100 BRCA TCGA-E9-A228 AP1M2 SNP Missense_Mutation 19 10689625 G C 33 57 BRCA TCGA-E9-A228 ZNF461 SNP Missense_Mutation 19 37134740 T C 59 54 BRCA TCGA-E9-A228 MUC16 SNP Missense_Mutation 19 9070657 C T 19 42 BRCA TCGA-E9-A228 SFXN5 SNP Missense_Mutation 2 73249692 G C 39 77 BRCA TCGA-E9-A228 SOGA1 SNP Missense_Mutation 20 35443721 C A 28 54 BRCA TCGA-E9-A228 SYNJ1 SNP Missense_Mutation 21 34014274 G A 40 84 BRCA TCGA-E9-A228 MMGT1 SNP Missense_Mutation 23 135053263 G A 33 78 BRCA TCGA-E9-A228 FAM120C SNP Missense_Mutation 23 54112160 G A 39 53 BRCA TCGA-E9-A228 FBLN2 SNP Silent 3 13669372 G A 39 37 BRCA TCGA-E9-A228 ATP11B SNP Missense_Mutation 3 182566341 G C 33 97 BRCA TCGA-E9-A228 CACNA2D2 SNP Silent 3 50404847 G A 33 65 BRCA TCGA-E9-A228 ELF2 SNP Silent 4 139981717 G T 35 59 BRCA TCGA-E9-A228 PRDM6 SNP Silent 5 122506701 G A 39 51 BRCA TCGA-E9-A228 PCDHGA3 SNP Silent 5 140725490 A C 11 48 BRCA TCGA-E9-A228 ANXA6 SNP Missense_Mutation 5 150509044 C T 19 97 BRCA TCGA-E9-A228 DDX4 SNP Missense_Mutation 5 55094277 C T 29 55 BRCA TCGA-E9-A228 TTLL2 SNP Missense_Mutation 6 167754327 A T 3 51 BRCA TCGA-E9-A228 MDN1 SNP Missense_Mutation 6 90411765 G A 38 59 BRCA TCGA-E9-A228 NFE2L3 SNP Missense_Mutation 7 26224525 T A 56 56 BRCA TCGA-E9-A228 FAM135B SNP Missense_Mutation 8 139255303 C T 19 91 BRCA TCGA-E9-A228 HEY1 SNP Silent 8 80677525 G A 41 52 BRCA TCGA-E9-A228 ASTN2 SNP Missense_Mutation 9 119488187 C T 23 100 BRCA TCGA-E9-A228 MAMDC4 SNP Missense_Mutation 9 139752492 C A 19 25 BRCA TCGA-E9-A228 SPAG8 DEL In_Frame_Del 9 35811486 CCAGGACCAGAG - 18 53 BRCA TCGA-E9-A229 SPTA1 SNP Nonsense_Mutation 1 158583566 C A 30 93 BRCA TCGA-E9-A229 EPHA2 SNP Missense_Mutation 1 16475203 C T 19 61 BRCA TCGA-E9-A229 XCL1 DEL Frame_Shift_Del 1 168550428 GACCAATACAGCT - 37 50 BRCA TCGA-E9-A229 MMACHC SNP Silent 1 45974548 G A 35 54 BRCA TCGA-E9-A229 HEPACAM SNP Nonsense_Mutation 11 124794753 G A 39 62 BRCA TCGA-E9-A229 NUP98 SNP Missense_Mutation 11 3803284 T C 60 73 BRCA TCGA-E9-A229 CYBASC3 SNP Missense_Mutation 11 61120579 G C 35 55 BRCA TCGA-E9-A229 RTN3 SNP Missense_Mutation 11 63525654 C T 26 85 BRCA TCGA-E9-A229 DRD4 DEL Frame_Shift_Del 11 637537 CCGCCGACCTCCT - 26 71 BRCA TCGA-E9-A229 GLI1 SNP Missense_Mutation 12 57863448 C T 23 86 BRCA TCGA-E9-A229 GEMIN2 SNP Silent 14 39584053 C T 21 85 BRCA TCGA-E9-A229 TNP2 SNP Missense_Mutation 16 11362818 C T 27 59 BRCA TCGA-E9-A229 CCP110 SNP Silent 16 19556523 C G 29 56 BRCA TCGA-E9-A229 FXR2 SNP Silent 17 7496417 C T 22 48 BRCA TCGA-E9-A229 PSTPIP2 SNP Missense_Mutation 18 43579418 G A 39 46 BRCA TCGA-E9-A229 FOXA3 SNP Silent 19 46376175 C T 32 60 BRCA TCGA-E9-A229 C1QL2 SNP Silent 2 119915594 C T 23 41 BRCA TCGA-E9-A229 ARL6IP6 DEL In_Frame_Del 2 153575506 TCC - 62 56 BRCA TCGA-E9-A229 OSBPL6 SNP Missense_Mutation 2 179213982 G A 38 97 BRCA TCGA-E9-A229 HEATR5B SNP Silent 2 37306265 T C 52 80 BRCA TCGA-E9-A229 CASS4 SNP Missense_Mutation 20 55021046 G A 40 42 BRCA TCGA-E9-A229 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-E9-A229 PLK4 SNP Silent 4 128804491 G A 45 60 BRCA TCGA-E9-A229 DSPP SNP Silent 4 88537444 C T 25 50 BRCA TCGA-E9-A229 CHD1 SNP Missense_Mutation 5 98240749 G C 33 93 BRCA TCGA-E9-A229 CBX3 DEL Frame_Shift_Del 7 26248161 AAGAA - 9 92 BRCA TCGA-E9-A229 SARDH SNP Silent 9 136531950 G T 42 53 BRCA TCGA-E9-A22A PTGS2 SNP Silent 1 186648296 G A 47 46 BRCA TCGA-E9-A22A F13B SNP Missense_Mutation 1 197009842 C T 29 65 BRCA TCGA-E9-A22A C1orf116 SNP Missense_Mutation 1 207195445 C A 28 52 BRCA TCGA-E9-A22A OR2L13 SNP Missense_Mutation 1 248263455 C T 31 51 BRCA TCGA-E9-A22A OR2M7 SNP Nonsense_Mutation 1 248487711 G A 47 54 BRCA TCGA-E9-A22A STIL SNP Missense_Mutation 1 47748020 C G 32 52 BRCA TCGA-E9-A22A FAM151A SNP Missense_Mutation 1 55075124 T C 53 55 BRCA TCGA-E9-A22A RERE DEL In_Frame_Del 1 8716322 TCTTTG - 54 84 BRCA TCGA-E9-A22A CUBN SNP Missense_Mutation 10 16967642 C T 29 82 BRCA TCGA-E9-A22A GALNTL4 SNP Missense_Mutation 11 11470443 G T 45 81 BRCA TCGA-E9-A22A OR10G7 SNP Missense_Mutation 11 123909447 C T 23 55 BRCA TCGA-E9-A22A CTNND1 SNP Silent 11 57569469 C G 29 61 BRCA TCGA-E9-A22A CCDC82 DEL In_Frame_Del 11 96117385 TCT - 58 50 BRCA TCGA-E9-A22A KSR2 SNP Silent 12 117962830 G A 40 48 BRCA TCGA-E9-A22A KIAA1024 SNP Silent 15 79748798 G A 33 55 BRCA TCGA-E9-A22A GTF3C1 SNP Missense_Mutation 16 27517273 T A 55 53 BRCA TCGA-E9-A22A MYLK3 SNP Silent 16 46764603 A G 10 50 BRCA TCGA-E9-A22A ZNF431 SNP Missense_Mutation 19 21365903 G C 42 69 BRCA TCGA-E9-A22A LPIN1 SNP Missense_Mutation 2 11959665 A G 5 79 BRCA TCGA-E9-A22A DIP2A SNP Missense_Mutation 21 47931375 C G 19 52 BRCA TCGA-E9-A22A BHLHB9 SNP Silent 23 102004787 C T 25 50 BRCA TCGA-E9-A22A MUM1L1 SNP Missense_Mutation 23 105450851 T G 53 66 BRCA TCGA-E9-A22A SLC7A14 SNP Missense_Mutation 3 170184915 C G 32 56 BRCA TCGA-E9-A22A STAB1 SNP Nonsense_Mutation 3 52544484 C A 26 75 BRCA TCGA-E9-A22A ANK2 SNP Missense_Mutation 4 114153390 G C 41 78 BRCA TCGA-E9-A22A CTAGE4 SNP Missense_Mutation 7 143882673 C T 24 38 BRCA TCGA-E9-A22A AVL9 SNP Missense_Mutation 7 32590994 T G 49 92 BRCA TCGA-E9-A22A SLC39A4 SNP Missense_Mutation 8 145640174 T A 55 56 BRCA TCGA-E9-A22B PKLR SNP Missense_Mutation 1 155261573 C T 27 68 BRCA TCGA-E9-A22B KCNH1 SNP Missense_Mutation 1 210948878 C T 32 87 BRCA TCGA-E9-A22B GALNT2 SNP Missense_Mutation 1 230313974 A G 4 73 BRCA TCGA-E9-A22B LZTS2 SNP Missense_Mutation 10 102763412 C T 24 74 BRCA TCGA-E9-A22B ZFAND4 SNP Missense_Mutation 10 46121562 A G 3 85 BRCA TCGA-E9-A22B AGAP4 SNP Silent 10 46342649 T C 57 51 BRCA TCGA-E9-A22B PRKCQ SNP Missense_Mutation 10 6520982 G A 40 84 BRCA TCGA-E9-A22B TCN1 SNP Missense_Mutation 11 59626616 C G 32 54 BRCA TCGA-E9-A22B CD248 SNP Missense_Mutation 11 66083729 C T 27 61 BRCA TCGA-E9-A22B GUCY2C SNP Silent 12 14798208 G A 45 57 BRCA TCGA-E9-A22B CNTN1 SNP Missense_Mutation 12 41419093 T A 59 66 BRCA TCGA-E9-A22B LEPREL2 SNP Missense_Mutation 12 6948564 G A 38 37 BRCA TCGA-E9-A22B NR2C1 SNP Missense_Mutation 12 95445620 T G 52 54 BRCA TCGA-E9-A22B OR11G2 SNP Missense_Mutation 14 20666089 G A 40 50 BRCA TCGA-E9-A22B KCNH5 SNP Missense_Mutation 14 63174294 A G 8 60 BRCA TCGA-E9-A22B SLC10A1 SNP Silent 14 70245985 T G 59 48 BRCA TCGA-E9-A22B FLRT2 SNP Missense_Mutation 14 86089456 C T 19 89 BRCA TCGA-E9-A22B HDGFRP3 SNP Missense_Mutation 15 83826259 C T 29 83 BRCA TCGA-E9-A22B ZNF592 SNP Missense_Mutation 15 85334047 C T 23 82 BRCA TCGA-E9-A22B NOXO1 SNP Silent 16 2029885 G A 40 48 BRCA TCGA-E9-A22B AP1G1 SNP Silent 16 71798295 C T 23 33 BRCA TCGA-E9-A22B PRKAR1A SNP Nonsense_Mutation 17 66511664 C T 31 60 BRCA TCGA-E9-A22B DSC2 SNP Missense_Mutation 18 28667707 C T 32 86 BRCA TCGA-E9-A22B KIAA1468 SNP Silent 18 59895751 A T 8 49 BRCA TCGA-E9-A22B ELOF1 SNP Missense_Mutation 19 11664586 T A 58 84 BRCA TCGA-E9-A22B CYP2A13 SNP Silent 19 41596358 C A 29 62 BRCA TCGA-E9-A22B ZNF677 SNP Silent 19 53740447 T A 54 47 BRCA TCGA-E9-A22B ZNF71 SNP Missense_Mutation 19 57132793 G C 33 65 BRCA TCGA-E9-A22B ZNF773 SNP Missense_Mutation 19 58017951 T C 54 48 BRCA TCGA-E9-A22B A1BG SNP Missense_Mutation 19 58862784 C T 27 54 BRCA TCGA-E9-A22B THSD7B SNP Missense_Mutation 2 137928463 G C 47 88 BRCA TCGA-E9-A22B POLR1A DEL Frame_Shift_Del 2 86292474 GTCCTCG - 36 98 BRCA TCGA-E9-A22B RBPJL SNP Missense_Mutation 20 43940867 G A 39 58 BRCA TCGA-E9-A22B SLC12A5 SNP Missense_Mutation 20 44680441 C G 20 91 BRCA TCGA-E9-A22B C21orf91 SNP Missense_Mutation 21 19169225 G A 33 65 BRCA TCGA-E9-A22B HMOX1 SNP Silent 22 35789489 G A 41 46 BRCA TCGA-E9-A22B TMLHE SNP Silent 23 154743676 C T 32 49 BRCA TCGA-E9-A22B PRICKLE3 SNP Nonsense_Mutation 23 49034759 G T 34 54 BRCA TCGA-E9-A22B LAS1L SNP Missense_Mutation 23 64754390 G A 38 77 BRCA TCGA-E9-A22B NUP210 SNP Missense_Mutation 3 13364872 A C 3 64 BRCA TCGA-E9-A22B MED12L SNP Missense_Mutation 3 151134206 C T 22 79 BRCA TCGA-E9-A22B SLC22A14 SNP Silent 3 38357875 A T 5 34 BRCA TCGA-E9-A22B SPINK8 SNP Missense_Mutation 3 48351420 T C 51 48 BRCA TCGA-E9-A22B CEP44 SNP Silent 4 175224964 G C 45 50 BRCA TCGA-E9-A22B GLRA3 SNP Missense_Mutation 4 175598272 G A 40 99 BRCA TCGA-E9-A22B ADAMTS12 SNP Missense_Mutation 5 33614429 T G 64 79 BRCA TCGA-E9-A22B EPB41L2 SNP Missense_Mutation 6 131184781 G C 44 54 BRCA TCGA-E9-A22B RNF182 SNP Missense_Mutation 6 13977576 G A 45 83 BRCA TCGA-E9-A22B KCNK16 SNP Silent 6 39284658 T G 59 42 BRCA TCGA-E9-A22B TFEB SNP Silent 6 41658742 C T 29 48 BRCA TCGA-E9-A22B EYS SNP Missense_Mutation 6 64487930 C T 21 76 BRCA TCGA-E9-A22B RINT1 SNP Missense_Mutation 7 105205897 A G 14 68 BRCA TCGA-E9-A22B TMEM168 SNP Silent 7 112424725 T C 49 47 BRCA TCGA-E9-A22B GCC1 SNP Silent 7 127224901 A C 6 50 BRCA TCGA-E9-A22B MGAM SNP Splice_Site 7 141781840 A C 7 89 BRCA TCGA-E9-A22B KLHL7 SNP Silent 7 23213659 C T 19 44 BRCA TCGA-E9-A22B CSMD3 SNP Missense_Mutation 8 113988224 C T 31 67 BRCA TCGA-E9-A22B MCMDC2 SNP Missense_Mutation 8 67796162 C G 23 48 BRCA TCGA-E9-A22B ZFHX4 SNP Missense_Mutation 8 77765416 C A 25 80 BRCA TCGA-E9-A22D DUSP10 DEL In_Frame_Del 1 221912854 GCACTGCTGCAT - 42 98 BRCA TCGA-E9-A22D WDR11 SNP Missense_Mutation 10 122618231 A G 4 57 BRCA TCGA-E9-A22D GATA3 INS Frame_Shift_Ins 10 8115874 - T 31 85 BRCA TCGA-E9-A22D ANKS4B SNP Silent 16 21261658 C T 19 49 BRCA TCGA-E9-A22D ABCA3 SNP Missense_Mutation 16 2335501 C A 21 92 BRCA TCGA-E9-A22D MYH4 SNP Missense_Mutation 17 10358322 G A 38 72 BRCA TCGA-E9-A22D TCEB3B SNP Missense_Mutation 18 44560939 C G 30 62 BRCA TCGA-E9-A22D OR7C2 SNP Silent 19 15052846 C T 23 30 BRCA TCGA-E9-A22D FAM71E2 SNP Splice_Site 19 55874336 G A 38 52 BRCA TCGA-E9-A22D ZSCAN5B SNP Silent 19 56703240 G A 37 49 BRCA TCGA-E9-A22D PEG3 SNP Missense_Mutation 19 57328299 C T 19 53 BRCA TCGA-E9-A22D BRE SNP Missense_Mutation 2 28521330 G A 41 100 BRCA TCGA-E9-A22D PLCXD1 SNP Missense_Mutation 23 215818 C T 27 53 BRCA TCGA-E9-A22D STARD8 SNP Splice_Site 23 67935135 G C 33 86 BRCA TCGA-E9-A22D KCNMB2 SNP Missense_Mutation 3 178560711 C T 19 62 BRCA TCGA-E9-A22D XIRP1 SNP Missense_Mutation 3 39229655 C T 25 50 BRCA TCGA-E9-A22D CCR2 SNP Nonsense_Mutation 3 46400009 C T 17 65 BRCA TCGA-E9-A22D TLR3 DEL Frame_Shift_Del 4 187005157 CATTT - 17 50 BRCA TCGA-E9-A22D KIAA1239 SNP Silent 4 37448092 C T 31 30 BRCA TCGA-E9-A22D FIP1L1 SNP Missense_Mutation 4 54319278 C T 30 85 BRCA TCGA-E9-A22D LMTK2 SNP Silent 7 97822732 A C 6 18 BRCA TCGA-E9-A22D DOLPP1 SNP Missense_Mutation 9 131848528 T G 62 88 BRCA TCGA-E9-A22D CNTNAP3 SNP Silent 9 39103829 G A 40 50 BRCA TCGA-E9-A22D NTRK2 SNP Missense_Mutation 9 87285830 C T 23 83 BRCA TCGA-E9-A22E FCRL3 SNP Missense_Mutation 1 157648560 T A 56 52 BRCA TCGA-E9-A22E ADCY10 SNP Missense_Mutation 1 167787330 T A 55 51 BRCA TCGA-E9-A22E CROCC SNP Silent 1 17264148 G C 47 56 BRCA TCGA-E9-A22E ZNF642 SNP Missense_Mutation 1 40960790 T A 56 52 BRCA TCGA-E9-A22E NPHP4 SNP Missense_Mutation 1 5923388 G C 33 52 BRCA TCGA-E9-A22E C1orf173 SNP Missense_Mutation 1 75037611 T A 56 55 BRCA TCGA-E9-A22E GBP4 SNP Silent 1 89660995 C G 21 49 BRCA TCGA-E9-A22E RET SNP Silent 10 43607665 T C 51 50 BRCA TCGA-E9-A22E ANK3 SNP Silent 10 61822913 C A 32 97 BRCA TCGA-E9-A22E AASDHPPT SNP Missense_Mutation 11 105962133 G C 41 71 BRCA TCGA-E9-A22E ANKK1 SNP Missense_Mutation 11 113264435 C G 26 74 BRCA TCGA-E9-A22E SRPR SNP Missense_Mutation 11 126133861 G C 35 99 BRCA TCGA-E9-A22E UBE2L6 SNP Missense_Mutation 11 57322087 G C 41 100 BRCA TCGA-E9-A22E RTN3 DEL Splice_site 11 63523641 AAGT - 1 85 BRCA TCGA-E9-A22E C12orf75 SNP Missense_Mutation 12 105760448 C G 30 78 BRCA TCGA-E9-A22E BIN2 SNP Missense_Mutation 12 51693051 C A 28 97 BRCA TCGA-E9-A22E KLHL1 SNP Silent 13 70535549 A G 4 75 BRCA TCGA-E9-A22E PCK2 SNP Missense_Mutation 14 24572061 C A 22 80 BRCA TCGA-E9-A22E PTGER2 SNP Silent 14 52793971 A C 9 50 BRCA TCGA-E9-A22E RYR3 SNP Missense_Mutation 15 33928672 G T 45 64 BRCA TCGA-E9-A22E STARD9 SNP Missense_Mutation 15 42977487 C G 18 49 BRCA TCGA-E9-A22E CKMT1B SNP Missense_Mutation 15 43890514 C G 24 58 BRCA TCGA-E9-A22E IREB2 SNP Missense_Mutation 15 78790455 A C 16 52 BRCA TCGA-E9-A22E CRYM SNP Silent 16 21288827 G A 38 58 BRCA TCGA-E9-A22E HYDIN SNP Silent 16 71101180 T C 55 49 BRCA TCGA-E9-A22E DNAH9 SNP Splice_Site 17 11597316 G T 44 93 BRCA TCGA-E9-A22E IFT20 SNP Missense_Mutation 17 26658938 T A 54 88 BRCA TCGA-E9-A22E RAB11FIP4 SNP Silent 17 29758839 A G 2 58 BRCA TCGA-E9-A22E HOXB3 SNP Missense_Mutation 17 46629656 C T 25 58 BRCA TCGA-E9-A22E MBTD1 SNP Silent 17 49270117 G C 41 56 BRCA TCGA-E9-A22E AMZ2 SNP Silent 17 66253041 G T 37 36 BRCA TCGA-E9-A22E DSG4 SNP Missense_Mutation 18 28992878 G A 40 72 BRCA TCGA-E9-A22E TRAPPC8 SNP Nonsense_Mutation 18 29487548 G A 45 93 BRCA TCGA-E9-A22E PALM3 SNP Silent 19 14165323 T A 54 26 BRCA TCGA-E9-A22E ZNF99 SNP Silent 19 22939510 C T 19 19 BRCA TCGA-E9-A22E AXL SNP Missense_Mutation 19 41736883 A G 10 74 BRCA TCGA-E9-A22E NLRP9 SNP Missense_Mutation 19 56244393 T A 52 36 BRCA TCGA-E9-A22E TTN SNP Silent 2 179471857 G A 45 63 BRCA TCGA-E9-A22E KIF1A SNP Missense_Mutation 2 241700197 G A 42 94 BRCA TCGA-E9-A22E STON1-GTF2A1L SNP Missense_Mutation 2 48873664 C T 21 68 BRCA TCGA-E9-A22E TMEM18 SNP Missense_Mutation 2 669836 T C 57 67 BRCA TCGA-E9-A22E CCDC142 SNP Missense_Mutation 2 74708475 G C 34 62 BRCA TCGA-E9-A22E ESF1 SNP Missense_Mutation 20 13699616 G C 37 79 BRCA TCGA-E9-A22E BPI SNP Missense_Mutation 20 36935973 C A 26 61 BRCA TCGA-E9-A22E SLC12A5 SNP Missense_Mutation 20 44685909 G A 47 95 BRCA TCGA-E9-A22E FAM65C SNP Missense_Mutation 20 49232576 G A 33 57 BRCA TCGA-E9-A22E PPDPF SNP Missense_Mutation 20 62152940 C T 21 79 BRCA TCGA-E9-A22E GCFC1 SNP Missense_Mutation 21 34117167 C G 30 62 BRCA TCGA-E9-A22E AIFM1 SNP Silent 23 129263589 A T 6 50 BRCA TCGA-E9-A22E ASB9 SNP Missense_Mutation 23 15262744 A G 9 59 BRCA TCGA-E9-A22E FLNA SNP Silent 23 153591108 G A 40 47 BRCA TCGA-E9-A22E GAB3 SNP Silent 23 153908516 G T 39 48 BRCA TCGA-E9-A22E VCX3A SNP Silent 23 6451924 T C 56 61 BRCA TCGA-E9-A22E GPR149 SNP Missense_Mutation 3 154147332 G T 35 57 BRCA TCGA-E9-A22E MUC4 SNP Missense_Mutation 3 195505807 G T 41 50 BRCA TCGA-E9-A22E ZNF662 SNP Missense_Mutation 3 42955921 G A 41 49 BRCA TCGA-E9-A22E PTPRG SNP Missense_Mutation 3 62204610 G C 45 68 BRCA TCGA-E9-A22E INTS12 SNP Missense_Mutation 4 106614625 C T 29 81 BRCA TCGA-E9-A22E DCLK2 SNP Missense_Mutation 4 151153843 C G 32 79 BRCA TCGA-E9-A22E FBXW7 SNP Missense_Mutation 4 153250888 C T 18 100 BRCA TCGA-E9-A22E NUDT9 SNP Missense_Mutation 4 88363019 T G 56 81 BRCA TCGA-E9-A22E DSPP SNP Silent 4 88537096 T C 59 49 BRCA TCGA-E9-A22E FAM13B SNP Missense_Mutation 5 137292177 C G 32 89 BRCA TCGA-E9-A22E FAM105A SNP Missense_Mutation 5 14609028 C G 32 59 BRCA TCGA-E9-A22E MEF2C SNP Missense_Mutation 5 88100452 T A 54 92 BRCA TCGA-E9-A22E GPR98 SNP Silent 5 90049486 C A 29 48 BRCA TCGA-E9-A22E FAM184A SNP Missense_Mutation 6 119337997 G C 36 96 BRCA TCGA-E9-A22E SOD2 SNP Silent 6 160109177 G A 40 39 BRCA TCGA-E9-A22E LRRC16A SNP Missense_Mutation 6 25600824 G T 33 51 BRCA TCGA-E9-A22E ZBTB12 SNP Missense_Mutation 6 31868782 C A 19 93 BRCA TCGA-E9-A22E VIPR2 SNP Nonsense_Mutation 7 158829459 G T 44 48 BRCA TCGA-E9-A22E SEMA3A SNP Missense_Mutation 7 83689801 A T 7 64 BRCA TCGA-E9-A22E KRIT1 SNP Missense_Mutation 7 91864817 T C 49 88 BRCA TCGA-E9-A22E PALM2-AKAP2 SNP Missense_Mutation 9 112898669 G C 33 74 BRCA TCGA-E9-A22E SWI5 SNP Silent 9 131038582 G A 42 45 BRCA TCGA-E9-A22E NUP188 SNP Silent 9 131760894 G A 36 63 BRCA TCGA-E9-A22E CARD9 SNP Missense_Mutation 9 139261697 C T 30 78 BRCA TCGA-E9-A22E DNAI1 SNP Nonsense_Mutation 9 34514510 G A 47 81 BRCA TCGA-E9-A22E ERMP1 SNP Missense_Mutation 9 5805055 C A 26 49 BRCA TCGA-E9-A22E APBA1 SNP Missense_Mutation 9 72130950 C A 31 100 BRCA TCGA-E9-A22G PDE4DIP SNP Missense_Mutation 1 144931537 G C 34 95 BRCA TCGA-E9-A22G MRPL9 SNP Missense_Mutation 1 151734858 C A 32 72 BRCA TCGA-E9-A22G RPTN SNP Missense_Mutation 1 152129003 T C 50 50 BRCA TCGA-E9-A22G HRNR SNP Missense_Mutation 1 152191305 G T 45 58 BRCA TCGA-E9-A22G FLG SNP Missense_Mutation 1 152279627 C G 32 50 BRCA TCGA-E9-A22G ASH1L SNP Missense_Mutation 1 155313997 C T 31 99 BRCA TCGA-E9-A22G PRCC SNP Missense_Mutation 1 156737604 C T 23 80 BRCA TCGA-E9-A22G LRRC71 SNP Silent 1 156901797 C A 30 59 BRCA TCGA-E9-A22G SLAMF7 DEL Frame_Shift_Del 1 160718165 GAGAG - 33 50 BRCA TCGA-E9-A22G SLAMF7 INS In_Frame_Ins 1 160718170 - TCC 57 70 BRCA TCGA-E9-A22G C1orf129 SNP Missense_Mutation 1 170959084 C A 17 58 BRCA TCGA-E9-A22G SLC30A1 SNP Silent 1 211749099 A G 7 48 BRCA TCGA-E9-A22G DNAH14 SNP Missense_Mutation 1 225546213 C G 18 63 BRCA TCGA-E9-A22G C1QC DEL Frame_Shift_Del 1 22974188 TGTGGCTGGC - 59 87 BRCA TCGA-E9-A22G MYOM3 SNP Missense_Mutation 1 24400724 T C 50 81 BRCA TCGA-E9-A22G HDAC1 DEL Frame_Shift_Del 1 32797806 AG - 7 50 BRCA TCGA-E9-A22G LEPRE1 SNP Missense_Mutation 1 43220572 T C 54 73 BRCA TCGA-E9-A22G TCTEX1D1 SNP Missense_Mutation 1 67243066 T A 56 62 BRCA TCGA-E9-A22G FAM22D SNP Missense_Mutation 10 89124824 G C 43 47 BRCA TCGA-E9-A22G FAM180B SNP Missense_Mutation 11 47608354 G A 44 49 BRCA TCGA-E9-A22G OR4B1 SNP Missense_Mutation 11 48238902 C G 26 56 BRCA TCGA-E9-A22G LPXN SNP Missense_Mutation 11 58317469 A C 13 92 BRCA TCGA-E9-A22G DDB1 SNP Missense_Mutation 11 61071447 T G 63 93 BRCA TCGA-E9-A22G SLC22A9 SNP Missense_Mutation 11 63138646 G A 42 37 BRCA TCGA-E9-A22G STARD10 SNP Silent 11 72492197 G T 43 54 BRCA TCGA-E9-A22G TAS2R10 SNP Missense_Mutation 12 10978499 T C 55 50 BRCA TCGA-E9-A22G EPS8 SNP Missense_Mutation 12 15803878 T A 54 89 BRCA TCGA-E9-A22G PLCZ1 SNP Silent 12 18852863 G A 33 37 BRCA TCGA-E9-A22G FAM60A SNP Silent 12 31435670 C A 25 55 BRCA TCGA-E9-A22G ACVR1B SNP Nonsense_Mutation 12 52374849 G A 47 100 BRCA TCGA-E9-A22G KCNC2 SNP Missense_Mutation 12 75444928 T A 62 92 BRCA TCGA-E9-A22G WNK1 SNP Missense_Mutation 12 994697 T C 49 63 BRCA TCGA-E9-A22G GRK1 SNP Missense_Mutation 13 114324074 G C 45 77 BRCA TCGA-E9-A22G GRK1 SNP Missense_Mutation 13 114325949 G C 33 71 BRCA TCGA-E9-A22G GJB6 SNP Missense_Mutation 13 20797418 A T 3 79 BRCA TCGA-E9-A22G ZC2HC1C SNP Silent 14 75537318 C T 27 49 BRCA TCGA-E9-A22G MAP1A SNP Missense_Mutation 15 43821506 A C 3 54 BRCA TCGA-E9-A22G GOLGA6A SNP Missense_Mutation 15 74368107 G T 47 56 BRCA TCGA-E9-A22G BAIAP3 SNP Silent 16 1395871 C T 28 58 BRCA TCGA-E9-A22G ZNF785 SNP Missense_Mutation 16 30593995 C A 26 50 BRCA TCGA-E9-A22G PIEZO1 SNP Missense_Mutation 16 88805107 G C 46 39 BRCA TCGA-E9-A22G PRDM7 SNP Missense_Mutation 16 90142278 T C 58 51 BRCA TCGA-E9-A22G MYOCD SNP Missense_Mutation 17 12659782 A G 7 55 BRCA TCGA-E9-A22G NCOR1 SNP Missense_Mutation 17 15942922 A T 12 51 BRCA TCGA-E9-A22G PSMD12 SNP Missense_Mutation 17 65340892 G T 33 78 BRCA TCGA-E9-A22G QRICH2 SNP Silent 17 74303558 G T 45 56 BRCA TCGA-E9-A22G TP53 INS Frame_Shift_Ins 17 7577127 - A 29 95 BRCA TCGA-E9-A22G GUCY2D SNP Missense_Mutation 17 7909959 C A 20 53 BRCA TCGA-E9-A22G SIRT7 SNP Silent 17 79872224 C G 31 44 BRCA TCGA-E9-A22G SMCHD1 SNP Missense_Mutation 18 2750494 G C 44 51 BRCA TCGA-E9-A22G DNMT1 DEL Splice_site 19 10277360 TTCTGTCACAGAAGACAAC - 60 50 BRCA TCGA-E9-A22G F2RL3 DEL Frame_Shift_Del 19 17001200 ACCCGAGCCCCAGCGCCTGGGGC - 10 56 BRCA TCGA-E9-A22G ZNF99 SNP Silent 19 22939859 A G 16 56 BRCA TCGA-E9-A22G ZBTB32 SNP Silent 19 36207192 C T 30 50 BRCA TCGA-E9-A22G ZNF569 SNP Missense_Mutation 19 37904029 T C 57 56 BRCA TCGA-E9-A22G WDR87 SNP Missense_Mutation 19 38379529 T A 56 53 BRCA TCGA-E9-A22G WDR87 SNP Silent 19 38380336 G C 33 52 BRCA TCGA-E9-A22G WDR87 SNP Silent 19 38380480 A G 8 44 BRCA TCGA-E9-A22G PKP4 SNP Nonsense_Mutation 2 159522952 C T 23 85 BRCA TCGA-E9-A22G ECEL1 SNP Silent 2 233345461 T A 59 28 BRCA TCGA-E9-A22G HJURP SNP Missense_Mutation 2 234750032 T C 60 48 BRCA TCGA-E9-A22G HADHB SNP Missense_Mutation 2 26492837 C A 26 81 BRCA TCGA-E9-A22G APLF SNP Missense_Mutation 2 68717336 A C 11 63 BRCA TCGA-E9-A22G MYH7B SNP Missense_Mutation 20 33584219 C G 27 84 BRCA TCGA-E9-A22G OCSTAMP SNP Nonsense_Mutation 20 45174574 G A 46 61 BRCA TCGA-E9-A22G SPO11 SNP Splice_Site 20 55909042 G A 35 98 BRCA TCGA-E9-A22G TRPM2 SNP Silent 21 45784057 C G 22 48 BRCA TCGA-E9-A22G ATP6V1E1 SNP Missense_Mutation 22 18077351 G A 37 54 BRCA TCGA-E9-A22G TOM1 SNP Silent 22 35729468 C G 32 60 BRCA TCGA-E9-A22G HMOX1 SNP Silent 22 35779123 C T 22 66 BRCA TCGA-E9-A22G HEPH SNP Missense_Mutation 23 65409615 G A 45 94 BRCA TCGA-E9-A22G TMPRSS7 SNP Silent 3 111795822 C T 20 67 BRCA TCGA-E9-A22G CASR SNP Missense_Mutation 3 122002995 A G 6 92 BRCA TCGA-E9-A22G SLITRK3 SNP Missense_Mutation 3 164905992 C A 30 78 BRCA TCGA-E9-A22G YEATS2 SNP Missense_Mutation 3 183436340 C G 25 95 BRCA TCGA-E9-A22G ABCC5 SNP Missense_Mutation 3 183681187 T C 57 89 BRCA TCGA-E9-A22G MUC4 SNP Missense_Mutation 3 195515927 G C 47 54 BRCA TCGA-E9-A22G SCN10A SNP Nonsense_Mutation 3 38802770 G A 46 98 BRCA TCGA-E9-A22G FAT4 SNP Missense_Mutation 4 126369679 A G 16 60 BRCA TCGA-E9-A22G USO1 SNP Missense_Mutation 4 76708240 C T 18 57 BRCA TCGA-E9-A22G USO1 SNP Missense_Mutation 4 76734444 T C 50 51 BRCA TCGA-E9-A22G PKD2 SNP Splice_Site 4 88940608 A C 3 81 BRCA TCGA-E9-A22G AQPEP SNP Missense_Mutation 5 115346461 C G 17 85 BRCA TCGA-E9-A22G HSD17B4 SNP Missense_Mutation 5 118814681 C G 27 100 BRCA TCGA-E9-A22G TRIM7 SNP Splice_site 5 180626095 C T 24 57 BRCA TCGA-E9-A22G SLC45A2 SNP Silent 5 33984320 C A 22 55 BRCA TCGA-E9-A22G HLA-F SNP Silent 6 29693318 G T 45 45 BRCA TCGA-E9-A22G NOTCH4 SNP Missense_Mutation 6 32188059 G T 36 69 BRCA TCGA-E9-A22G NUDT3 SNP Missense_Mutation 6 34256620 C G 29 64 BRCA TCGA-E9-A22G C6orf165 SNP Missense_Mutation 6 88144769 C A 29 67 BRCA TCGA-E9-A22G KLRG2 SNP Missense_Mutation 7 139138880 G C 40 35 BRCA TCGA-E9-A22G ERV3-1 DEL In_Frame_Del 7 64453317 GGAGGCATCCCTCCC - 47 52 BRCA TCGA-E9-A22G DLX6 SNP Silent 7 96639203 G A 39 46 BRCA TCGA-E9-A22G FAM160B2 SNP Splice_Site 8 21951949 A G 7 83 BRCA TCGA-E9-A22G EPHX2 SNP Silent 8 27369412 G C 44 37 BRCA TCGA-E9-A22G HNF4G SNP Silent 8 76465339 T C 59 66 BRCA TCGA-E9-A22G FCN1 SNP Silent 9 137804958 C T 22 43 BRCA TCGA-E9-A22G WNK2 DEL Frame_Shift_Del 9 96002071 TCTTC - 62 89 BRCA TCGA-E9-A22G WNK2 DEL In_Frame_Del 9 96002077 CAGAGGACA - 25 98 BRCA TCGA-E9-A22H EYA3 SNP Missense_Mutation 1 28304975 G C 34 72 BRCA TCGA-E9-A22H DHCR24 SNP Missense_Mutation 1 55331049 C T 31 45 BRCA TCGA-E9-A22H WSCD2 SNP Missense_Mutation 12 108626636 G A 47 94 BRCA TCGA-E9-A22H ASIC1 SNP Missense_Mutation 12 50452677 G A 39 83 BRCA TCGA-E9-A22H AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-E9-A22H VPS13C SNP Missense_Mutation 15 62214879 G A 40 51 BRCA TCGA-E9-A22H CCDC135 SNP Missense_Mutation 16 57760065 G A 38 59 BRCA TCGA-E9-A22H TAT INS Frame_Shift_Ins 16 71603760 - AGGT 45 51 BRCA TCGA-E9-A22H CLEC10A SNP Missense_Mutation 17 6979420 C G 17 42 BRCA TCGA-E9-A22H SETBP1 INS Frame_Shift_Ins 18 42456670 - TCTT 29 24 BRCA TCGA-E9-A22H CASP8 SNP Missense_Mutation 2 202141586 C T 31 66 BRCA TCGA-E9-A22H MED12 INS Frame_Shift_Ins 23 70356283 - CA 18 55 BRCA TCGA-E9-A22H ADAM29 SNP Missense_Mutation 4 175897839 C G 17 35 BRCA TCGA-E9-A22H MAP3K1 SNP Missense_Mutation 5 56161678 A G 16 86 BRCA TCGA-E9-A22H HDDC2 SNP Missense_Mutation 6 125598270 T A 56 49 BRCA TCGA-E9-A22H F13A1 SNP Missense_Mutation 6 6182361 A T 11 77 BRCA TCGA-E9-A22H UFL1 SNP Missense_Mutation 6 96990799 G A 47 73 BRCA TCGA-E9-A22H SRRT SNP Missense_Mutation 7 100485396 G A 38 80 BRCA TCGA-E9-A22H MDFIC INS Frame_Shift_Ins 7 114619630 - A 49 64 BRCA TCGA-E9-A22H FAM120A SNP Silent 9 96294650 A G 14 53 BRCA TCGA-E9-A243 CA14 SNP Missense_Mutation 1 150230552 T A 59 60 BRCA TCGA-E9-A243 HRNR SNP Nonsense_Mutation 1 152192919 G A 45 49 BRCA TCGA-E9-A243 RD3 SNP Silent 1 211652657 C T 25 49 BRCA TCGA-E9-A243 PIK3CD SNP Missense_Mutation 1 9781585 T C 62 91 BRCA TCGA-E9-A243 OPTN SNP Silent 10 13174129 A G 1 57 BRCA TCGA-E9-A243 TRAF6 SNP Missense_Mutation 11 36518707 T C 55 69 BRCA TCGA-E9-A243 PICALM SNP Nonsense_Mutation 11 85722144 C A 32 100 BRCA TCGA-E9-A243 BTBD11 SNP Silent 12 108012010 C A 23 47 BRCA TCGA-E9-A243 NOS1 SNP Missense_Mutation 12 117696222 G T 36 64 BRCA TCGA-E9-A243 KSR2 SNP Missense_Mutation 12 117977596 T C 53 91 BRCA TCGA-E9-A243 SCAF11 SNP Missense_Mutation 12 46320764 G A 41 77 BRCA TCGA-E9-A243 EEA1 DEL In_Frame_Del 12 93221730 TTG - 56 56 BRCA TCGA-E9-A243 PRTG SNP Missense_Mutation 15 55912380 G T 43 81 BRCA TCGA-E9-A243 RNF111 SNP Missense_Mutation 15 59323149 T A 52 88 BRCA TCGA-E9-A243 PARP6 SNP Missense_Mutation 15 72546845 C G 23 96 BRCA TCGA-E9-A243 APOBR SNP Silent 16 28507082 G C 43 51 BRCA TCGA-E9-A243 C16orf53 SNP Missense_Mutation 16 29828128 G C 35 54 BRCA TCGA-E9-A243 TAT SNP Missense_Mutation 16 71610261 C T 19 53 BRCA TCGA-E9-A243 TRPV2 SNP Missense_Mutation 17 16326827 G A 48 55 BRCA TCGA-E9-A243 GH1 SNP Silent 17 61994783 G A 40 37 BRCA TCGA-E9-A243 TP53 SNP Missense_Mutation 17 7578190 T G 49 88 BRCA TCGA-E9-A243 TP53 SNP Nonsense_Mutation 17 7579414 C T 26 75 BRCA TCGA-E9-A243 WDR87 SNP Missense_Mutation 19 38380815 C T 27 50 BRCA TCGA-E9-A243 EIF5B SNP Missense_Mutation 2 100007074 G C 41 88 BRCA TCGA-E9-A243 FMNL2 SNP Missense_Mutation 2 153435429 C G 30 100 BRCA TCGA-E9-A243 WDSUB1 SNP Missense_Mutation 2 160139361 T C 60 92 BRCA TCGA-E9-A243 XIRP2 SNP Missense_Mutation 2 168101752 T A 64 60 BRCA TCGA-E9-A243 ANKRD44 SNP Missense_Mutation 2 197865158 C G 32 55 BRCA TCGA-E9-A243 FLRT3 SNP Missense_Mutation 20 14307453 G A 38 65 BRCA TCGA-E9-A243 CPNE1 SNP Missense_Mutation 20 34218833 C T 30 85 BRCA TCGA-E9-A243 ACTR5 SNP Silent 20 37380924 C A 31 29 BRCA TCGA-E9-A243 NDUFV3 SNP Missense_Mutation 21 44323603 G A 45 63 BRCA TCGA-E9-A243 GPRASP1 SNP Missense_Mutation 23 101910990 G A 33 55 BRCA TCGA-E9-A243 PLP1 SNP Missense_Mutation 23 103044308 C A 25 76 BRCA TCGA-E9-A243 DOCK11 SNP Missense_Mutation 23 117743298 G C 33 66 BRCA TCGA-E9-A243 CUL4B SNP Missense_Mutation 23 119673224 T A 56 89 BRCA TCGA-E9-A243 RPGR SNP Missense_Mutation 23 38145826 T C 54 52 BRCA TCGA-E9-A243 PQBP1 SNP Silent 23 48759291 G C 39 52 BRCA TCGA-E9-A243 WNK3 SNP Missense_Mutation 23 54259337 G C 47 52 BRCA TCGA-E9-A243 ATR SNP Missense_Mutation 3 142274964 T A 50 66 BRCA TCGA-E9-A243 OTOL1 SNP Missense_Mutation 3 161221388 G T 33 64 BRCA TCGA-E9-A243 MUC4 SNP Silent 3 195506517 G A 47 44 BRCA TCGA-E9-A243 DOCK3 DEL In_Frame_Del 3 51418700 GTCCACTACAGCCTCTCTGAGTCTGCC - 48 82 BRCA TCGA-E9-A243 DNAH12 SNP Missense_Mutation 3 57394164 C T 19 99 BRCA TCGA-E9-A243 PXK SNP Missense_Mutation 3 58368396 A C 15 53 BRCA TCGA-E9-A243 SMAD1 SNP Missense_Mutation 4 146467997 G C 33 68 BRCA TCGA-E9-A243 FSTL4 SNP Missense_Mutation 5 132652191 G C 46 51 BRCA TCGA-E9-A243 KIAA0947 SNP Missense_Mutation 5 5464537 C T 32 63 BRCA TCGA-E9-A243 PTPRK SNP Nonsense_Mutation 6 128404925 C A 29 89 BRCA TCGA-E9-A243 BACH2 SNP Missense_Mutation 6 90660867 G A 43 55 BRCA TCGA-E9-A243 EPHA1 SNP Missense_Mutation 7 143091403 C G 29 98 BRCA TCGA-E9-A243 TAF6 SNP Silent 7 99711749 G A 37 47 BRCA TCGA-E9-A243 BAG4 SNP Silent 8 38067546 C T 26 61 BRCA TCGA-E9-A243 ZFAND1 SNP Silent 8 82626198 C T 29 53 BRCA TCGA-E9-A243 TBC1D2 SNP Missense_Mutation 9 101006381 A T 7 59 BRCA TCGA-E9-A243 RNF20 SNP Missense_Mutation 9 104315014 A G 1 84 BRCA TCGA-E9-A243 CTNNAL1 SNP Missense_Mutation 9 111775599 G C 36 57 BRCA TCGA-E9-A243 TBC1D13 SNP Missense_Mutation 9 131568232 G C 47 98 BRCA TCGA-E9-A243 TPM2 SNP Silent 9 35689719 A G 7 45 BRCA TCGA-E9-A244 TCHH SNP Missense_Mutation 1 152080781 G A 39 58 BRCA TCGA-E9-A244 TCHH SNP Missense_Mutation 1 152081930 C T 32 49 BRCA TCGA-E9-A244 LCE3A SNP Silent 1 152595499 T G 55 50 BRCA TCGA-E9-A244 IQGAP3 SNP Missense_Mutation 1 156532441 T A 55 48 BRCA TCGA-E9-A244 FCER1A SNP Missense_Mutation 1 159273897 G A 45 46 BRCA TCGA-E9-A244 KCNJ10 SNP Silent 1 160011189 A G 8 38 BRCA TCGA-E9-A244 ATP1A4 SNP Silent 1 160145985 C A 22 51 BRCA TCGA-E9-A244 ADCY10 SNP Missense_Mutation 1 167778922 T G 51 59 BRCA TCGA-E9-A244 PAPPA2 SNP Missense_Mutation 1 176564589 C T 23 86 BRCA TCGA-E9-A244 FAM5C SNP Missense_Mutation 1 190067723 A C 3 86 BRCA TCGA-E9-A244 PPP1R15B SNP Missense_Mutation 1 204379798 C G 20 68 BRCA TCGA-E9-A244 CSMD2 SNP Missense_Mutation 1 34498201 A G 15 79 BRCA TCGA-E9-A244 COL9A2 SNP Missense_Mutation 1 40776400 T A 51 80 BRCA TCGA-E9-A244 ZNF511 SNP Silent 10 135165568 G T 48 45 BRCA TCGA-E9-A244 ZNF511 SNP Silent 10 135165631 C T 26 45 BRCA TCGA-E9-A244 CUBN DEL Frame_Shift_Del 10 16960761 TCCACTCCATCCC - 50 77 BRCA TCGA-E9-A244 USP28 SNP Missense_Mutation 11 113704197 G A 39 95 BRCA TCGA-E9-A244 CBL SNP Silent 11 119170209 C A 29 53 BRCA TCGA-E9-A244 OR8B2 SNP Silent 11 124252388 G A 45 46 BRCA TCGA-E9-A244 TMEM218 INS Frame_Shift_Ins 11 124971139 - A 41 49 BRCA TCGA-E9-A244 KCNA4 SNP Missense_Mutation 11 30033730 A T 15 89 BRCA TCGA-E9-A244 KIAA1549L SNP Missense_Mutation 11 33596315 A G 2 89 BRCA TCGA-E9-A244 RCOR2 SNP Missense_Mutation 11 63681469 G T 40 74 BRCA TCGA-E9-A244 EHD1 SNP Silent 11 64622246 G A 40 51 BRCA TCGA-E9-A244 HCFC2 SNP Missense_Mutation 12 104459971 G C 48 96 BRCA TCGA-E9-A244 NOS1 SNP Silent 12 117691526 G T 35 38 BRCA TCGA-E9-A244 NCKAP5L SNP Silent 12 50188850 C A 29 49 BRCA TCGA-E9-A244 KRT76 SNP Missense_Mutation 12 53169205 C T 28 50 BRCA TCGA-E9-A244 PTPRB SNP Missense_Mutation 12 70970306 C G 23 47 BRCA TCGA-E9-A244 C12orf74 SNP Silent 12 93100671 G A 46 47 BRCA TCGA-E9-A244 PCNXL4 SNP Missense_Mutation 14 60592455 A C 8 68 BRCA TCGA-E9-A244 SPTB SNP Splice_Site 14 65267588 T G 55 90 BRCA TCGA-E9-A244 ADAM20 SNP Missense_Mutation 14 70989944 G T 47 70 BRCA TCGA-E9-A244 DICER1 SNP Missense_Mutation 14 95582139 G C 41 99 BRCA TCGA-E9-A244 PCSK6 SNP Nonsense_Mutation 15 101910615 G T 45 76 BRCA TCGA-E9-A244 CHRFAM7A SNP Missense_Mutation 15 30664509 A C 6 80 BRCA TCGA-E9-A244 IGFALS SNP Silent 16 1840820 C T 21 26 BRCA TCGA-E9-A244 ZP2 SNP Silent 16 21221500 G A 38 56 BRCA TCGA-E9-A244 SLC38A7 SNP Missense_Mutation 16 58712260 C A 32 87 BRCA TCGA-E9-A244 P2RX5 SNP Missense_Mutation 17 3593780 C G 21 38 BRCA TCGA-E9-A244 RHBDF2 SNP Nonsense_Mutation 17 74469974 C A 30 100 BRCA TCGA-E9-A244 TP53 SNP Missense_Mutation 17 7578406 C T 27 97 BRCA TCGA-E9-A244 DCC SNP Missense_Mutation 18 50918111 G T 36 98 BRCA TCGA-E9-A244 CDH19 SNP Silent 18 64239349 G A 45 31 BRCA TCGA-E9-A244 CNDP1 SNP Missense_Mutation 18 72245522 G A 40 100 BRCA TCGA-E9-A244 ZNF44 SNP Missense_Mutation 19 12384316 G A 44 68 BRCA TCGA-E9-A244 RYR1 SNP Missense_Mutation 19 38979876 G T 35 57 BRCA TCGA-E9-A244 SHISA7 SNP Silent 19 55952018 C T 27 45 BRCA TCGA-E9-A244 ZNF552 SNP Missense_Mutation 19 58319711 G T 48 46 BRCA TCGA-E9-A244 ACTL9 SNP Missense_Mutation 19 8808585 G C 42 66 BRCA TCGA-E9-A244 STAM2 SNP Missense_Mutation 2 153000517 T A 49 54 BRCA TCGA-E9-A244 CASP8 SNP Missense_Mutation 2 202149905 C T 19 47 BRCA TCGA-E9-A244 C2orf71 SNP Missense_Mutation 2 29295725 T C 59 50 BRCA TCGA-E9-A244 RTN4 SNP Missense_Mutation 2 55252437 C G 20 41 BRCA TCGA-E9-A244 MRPS5 SNP Silent 2 95775737 T C 54 51 BRCA TCGA-E9-A244 FRG1B SNP Missense_Mutation 20 29624068 T C 51 63 BRCA TCGA-E9-A244 MMP9 SNP Silent 20 44639885 C T 19 53 BRCA TCGA-E9-A244 ETS2 SNP Nonsense_Mutation 21 40191520 T A 63 93 BRCA TCGA-E9-A244 COL18A1 SNP Silent 21 46925826 G C 47 48 BRCA TCGA-E9-A244 PEX26 SNP Missense_Mutation 22 18562666 G C 48 87 BRCA TCGA-E9-A244 ELFN2 SNP Missense_Mutation 22 37771398 G T 44 85 BRCA TCGA-E9-A244 PDGFB SNP Missense_Mutation 22 39621808 G A 39 79 BRCA TCGA-E9-A244 FATE1 SNP Splice_site 23 150889973 G C 39 51 BRCA TCGA-E9-A244 ATP13A4 SNP Splice_Site 3 193182727 A T 14 93 BRCA TCGA-E9-A244 LRRC15 SNP Missense_Mutation 3 194081730 C T 28 60 BRCA TCGA-E9-A244 ARPP21 SNP Silent 3 35725220 A G 7 58 BRCA TCGA-E9-A244 SETD2 SNP Missense_Mutation 3 47164556 T G 64 70 BRCA TCGA-E9-A244 DOCK3 SNP Missense_Mutation 3 51263131 G C 33 84 BRCA TCGA-E9-A244 FREM3 SNP Splice_site 4 144548913 C A 30 64 BRCA TCGA-E9-A244 LRRC66 SNP Silent 4 52861775 A T 7 43 BRCA TCGA-E9-A244 PCDHA1 SNP Missense_Mutation 5 140167566 C T 27 54 BRCA TCGA-E9-A244 SLC36A1 SNP Nonsense_Mutation 5 150846797 G T 43 99 BRCA TCGA-E9-A244 SLC9A3 SNP Missense_Mutation 5 485334 C T 17 92 BRCA TCGA-E9-A244 NOTCH4 SNP Missense_Mutation 6 32188550 C A 25 93 BRCA TCGA-E9-A244 SCUBE3 SNP Silent 6 35213839 C T 22 53 BRCA TCGA-E9-A244 DST SNP Missense_Mutation 6 56473334 G C 36 62 BRCA TCGA-E9-A244 TMEM120A DEL Splice_Site 7 75616520 GTGAAACTTGTGGTGCACAACCCTCAGG - 48 49 BRCA TCGA-E9-A244 GLCCI1 SNP Missense_Mutation 7 8126035 C T 19 75 BRCA TCGA-E9-A244 PEX1 SNP Missense_Mutation 7 92122328 G C 34 100 BRCA TCGA-E9-A244 DLC1 INS Frame_Shift_Ins 8 12956004 - T 33 99 BRCA TCGA-E9-A244 EEF1D SNP Silent 8 144662368 A G 8 49 BRCA TCGA-E9-A245 VPS13D SNP Splice_Site 1 12409220 G A 33 99 BRCA TCGA-E9-A245 ARNT SNP Missense_Mutation 1 150786681 G T 36 89 BRCA TCGA-E9-A245 CGN SNP Missense_Mutation 1 151502487 C T 23 49 BRCA TCGA-E9-A245 ZC3H12A SNP Missense_Mutation 1 37948869 C G 26 66 BRCA TCGA-E9-A245 CLCA4 SNP Silent 1 87031586 T G 55 51 BRCA TCGA-E9-A245 GATA3 INS Frame_Shift_Ins 10 8115928 - AT 21 98 BRCA TCGA-E9-A245 TMPRSS13 DEL In_Frame_Del 11 117789313 GGGCTGGAGATGCCT - 39 41 BRCA TCGA-E9-A245 MUC5B SNP Silent 11 1261520 C A 29 47 BRCA TCGA-E9-A245 NOP9 INS In_Frame_Ins 14 24769849 - GAGGAG 7 43 BRCA TCGA-E9-A245 DLGAP5 SNP Splice_Site 14 55647930 C A 18 75 BRCA TCGA-E9-A245 TMEM251 SNP Silent 14 93652791 C T 20 61 BRCA TCGA-E9-A245 N4BP1 SNP Silent 16 48596338 G T 33 67 BRCA TCGA-E9-A245 INCA1 SNP Silent 17 4892728 G T 45 51 BRCA TCGA-E9-A245 SP3 SNP Missense_Mutation 2 174777831 C A 29 100 BRCA TCGA-E9-A245 WFDC10A DEL Frame_Shift_Del 20 44258485 TCTCTGTG - 62 40 BRCA TCGA-E9-A245 DOCK11 SNP Nonsense_Mutation 23 117722171 G T 45 81 BRCA TCGA-E9-A245 ASTE1 INS Frame_Shift_Ins 3 130733046 - T 24 50 BRCA TCGA-E9-A245 GLB1 SNP Missense_Mutation 3 33110406 T C 58 88 BRCA TCGA-E9-A245 SLBP SNP Nonsense_Mutation 4 1698071 G A 37 65 BRCA TCGA-E9-A245 PCDHA10 SNP Missense_Mutation 5 140236550 C T 28 45 BRCA TCGA-E9-A245 PCDHB11 SNP Missense_Mutation 5 140580941 G A 43 40 BRCA TCGA-E9-A245 CARTPT DEL In_Frame_Del 5 71015730 GAA - 45 80 BRCA TCGA-E9-A245 FAM135B SNP Missense_Mutation 8 139190894 T C 63 64 BRCA TCGA-E9-A245 PIP5K1B SNP Missense_Mutation 9 71509406 C T 19 100 BRCA TCGA-E9-A247 BCL9 SNP Missense_Mutation 1 147091300 C T 30 65 BRCA TCGA-E9-A247 USH2A SNP Missense_Mutation 1 216591941 C T 27 66 BRCA TCGA-E9-A247 ZBTB48 SNP Missense_Mutation 1 6640763 G T 40 76 BRCA TCGA-E9-A247 CUBN SNP Missense_Mutation 10 17024557 G A 37 58 BRCA TCGA-E9-A247 RAB18 SNP Silent 10 27798830 C G 19 88 BRCA TCGA-E9-A247 SLC29A3 DEL Frame_Shift_Del 10 73111493 CTAC - 32 58 BRCA TCGA-E9-A247 C11orf70 SNP Missense_Mutation 11 101951992 G A 48 52 BRCA TCGA-E9-A247 OR5M8 SNP Missense_Mutation 11 56258125 C A 26 53 BRCA TCGA-E9-A247 POLE SNP Missense_Mutation 12 133250274 A G 13 92 BRCA TCGA-E9-A247 ABCC9 SNP Missense_Mutation 12 22086768 C T 27 57 BRCA TCGA-E9-A247 FREM2 SNP Silent 13 39261493 C G 23 49 BRCA TCGA-E9-A247 ERI2 SNP Missense_Mutation 16 20802184 T G 55 55 BRCA TCGA-E9-A247 ABCA3 SNP Silent 16 2336775 G A 38 30 BRCA TCGA-E9-A247 KRTAP4-6 SNP Missense_Mutation 17 39296499 G A 39 52 BRCA TCGA-E9-A247 ABCC3 SNP Missense_Mutation 17 48755286 C G 22 72 BRCA TCGA-E9-A247 RTTN SNP Missense_Mutation 18 67684825 T C 56 72 BRCA TCGA-E9-A247 ZNF69 SNP Missense_Mutation 19 12016108 C T 19 55 BRCA TCGA-E9-A247 CACTIN SNP Missense_Mutation 19 3619155 C T 19 95 BRCA TCGA-E9-A247 PPFIA3 SNP Missense_Mutation 19 49632226 C T 28 96 BRCA TCGA-E9-A247 TBC1D8 SNP Missense_Mutation 2 101656749 G A 40 88 BRCA TCGA-E9-A247 TTN SNP Missense_Mutation 2 179611371 C G 20 51 BRCA TCGA-E9-A247 FAM228A INS Frame_Shift_Ins 2 24402127 - AA 19 62 BRCA TCGA-E9-A247 KCNS1 SNP Missense_Mutation 20 43723698 C T 23 71 BRCA TCGA-E9-A247 CT47B1 DEL In_Frame_Del 23 120008797 TCCTCTGTGGCCTCCTCTGTGAGCTTC - 62 51 BRCA TCGA-E9-A247 POF1B SNP Silent 23 84634256 G T 35 58 BRCA TCGA-E9-A247 SYTL4 SNP Silent 23 99942108 G A 42 60 BRCA TCGA-E9-A247 MUC4 SNP Missense_Mutation 3 195505841 C T 24 51 BRCA TCGA-E9-A247 MUC4 SNP Missense_Mutation 3 195507851 C T 27 49 BRCA TCGA-E9-A247 MUC4 SNP Silent 3 195509655 G T 47 59 BRCA TCGA-E9-A247 MUC4 SNP Silent 3 195511788 G A 40 65 BRCA TCGA-E9-A247 FAT4 SNP Missense_Mutation 4 126372690 G A 39 100 BRCA TCGA-E9-A247 PPARGC1A SNP Nonsense_Mutation 4 23815386 G A 37 85 BRCA TCGA-E9-A247 PCDHGC4 SNP Missense_Mutation 5 140866811 C G 24 58 BRCA TCGA-E9-A247 CMYA5 SNP Missense_Mutation 5 79035212 A G 16 72 BRCA TCGA-E9-A247 HIST1H3F SNP Missense_Mutation 6 26250661 G A 37 98 BRCA TCGA-E9-A247 DEFB112 SNP Missense_Mutation 6 50011380 C T 19 21 BRCA TCGA-E9-A247 ELN SNP Missense_Mutation 7 73474894 T C 54 47 BRCA TCGA-E9-A247 CSMD1 SNP Missense_Mutation 8 3081256 G T 45 76 BRCA TCGA-E9-A247 WHSC1L1 SNP Nonsense_Mutation 8 38173482 G C 45 85 BRCA TCGA-E9-A248 SPTA1 SNP Silent 1 158651410 C T 29 93 BRCA TCGA-E9-A248 EPC1 SNP Missense_Mutation 10 32558007 G A 38 94 BRCA TCGA-E9-A248 IDE SNP Nonsense_Mutation 10 94234712 G A 38 69 BRCA TCGA-E9-A248 MPEG1 SNP Missense_Mutation 11 58979086 G A 39 80 BRCA TCGA-E9-A248 ATP11A SNP Missense_Mutation 13 113512220 C T 27 84 BRCA TCGA-E9-A248 NIN SNP Missense_Mutation 14 51243678 C A 17 52 BRCA TCGA-E9-A248 GOLGA8J SNP Missense_Mutation 15 32686365 A G 7 60 BRCA TCGA-E9-A248 B2M SNP Missense_Mutation 15 45007801 A T 16 82 BRCA TCGA-E9-A248 IFI35 SNP Silent 17 41165618 C T 27 25 BRCA TCGA-E9-A248 C3 SNP Missense_Mutation 19 6712375 G C 43 62 BRCA TCGA-E9-A248 CCL20 SNP Missense_Mutation 2 228680193 C T 32 74 BRCA TCGA-E9-A248 PLCB4 SNP Missense_Mutation 20 9417764 C T 19 87 BRCA TCGA-E9-A248 USP13 DEL Splice_site 3 179371013 CATGCAGCG - 21 53 BRCA TCGA-E9-A248 LRBA SNP Silent 4 151935687 T C 60 48 BRCA TCGA-E9-A248 ZBTB9 SNP Missense_Mutation 6 33423544 G A 45 71 BRCA TCGA-E9-A248 PLOD3 SNP Missense_Mutation 7 100856163 C G 26 70 BRCA TCGA-E9-A248 CNTNAP2 SNP Missense_Mutation 7 146825878 G A 40 57 BRCA TCGA-E9-A248 ODF2 SNP Missense_Mutation 9 131221854 C T 31 77 BRCA TCGA-E9-A249 CD34 INS Frame_Shift_Ins 1 208063100 - A 33 45 BRCA TCGA-E9-A249 EPHB2 SNP Silent 1 23111511 C T 31 49 BRCA TCGA-E9-A249 CSMD2 SNP Silent 1 34052731 G T 41 49 BRCA TCGA-E9-A249 USP54 SNP Missense_Mutation 10 75279643 G A 37 95 BRCA TCGA-E9-A249 GATA3 DEL Splice_Site 10 8111433 CA - 29 87 BRCA TCGA-E9-A249 HYOU1 SNP Missense_Mutation 11 118919513 C G 23 70 BRCA TCGA-E9-A249 KCNJ11 SNP Silent 11 17408781 G T 41 56 BRCA TCGA-E9-A249 TNKS1BP1 SNP Missense_Mutation 11 57076056 C T 23 54 BRCA TCGA-E9-A249 OR2D3 SNP Missense_Mutation 11 6942870 T A 51 60 BRCA TCGA-E9-A249 UBE3A DEL Frame_Shift_Del 15 25585293 GTGCTCTGTCT - 44 100 BRCA TCGA-E9-A249 IFT140 SNP Silent 16 1575899 C A 22 62 BRCA TCGA-E9-A249 CBFB SNP Missense_Mutation 16 67063371 C G 28 53 BRCA TCGA-E9-A249 ELSPBP1 SNP Splice_Site 19 48517566 G T 44 68 BRCA TCGA-E9-A249 NLRP2 SNP Silent 19 55495082 C T 19 43 BRCA TCGA-E9-A249 LDOC1 SNP Silent 23 140271018 C A 26 55 BRCA TCGA-E9-A249 MXRA5 SNP Missense_Mutation 23 3229027 T C 55 66 BRCA TCGA-E9-A249 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-E9-A249 WDR19 SNP Missense_Mutation 4 39236448 C A 18 55 BRCA TCGA-E9-A249 SLC26A1 SNP Missense_Mutation 4 982720 G C 48 54 BRCA TCGA-E9-A249 CYP11B2 SNP Missense_Mutation 8 143994109 C T 27 85 BRCA TCGA-E9-A249 MYOM2 SNP Missense_Mutation 8 2020571 G A 38 59 BRCA TCGA-E9-A24A C1orf65 SNP Missense_Mutation 1 223567541 G A 44 37 BRCA TCGA-E9-A24A MYO16 SNP Missense_Mutation 13 109704802 G T 33 70 BRCA TCGA-E9-A24A CCPG1 SNP Missense_Mutation 15 55677882 T A 58 56 BRCA TCGA-E9-A24A DNAH9 SNP Missense_Mutation 17 11603195 G A 39 100 BRCA TCGA-E9-A24A MUM1 SNP Splice_site 19 1362249 A G 11 49 BRCA TCGA-E9-A24A ELSPBP1 SNP Missense_Mutation 19 48522988 A T 4 57 BRCA TCGA-E9-A24A PLXNB3 SNP Missense_Mutation 23 153043072 C A 18 63 BRCA TCGA-E9-A24A CCDC50 SNP Missense_Mutation 3 191047486 A T 7 68 BRCA TCGA-E9-A24A KBTBD5 SNP Missense_Mutation 3 42730193 G A 39 96 BRCA TCGA-E9-A24A UBE2D3 SNP Missense_Mutation 4 103730974 A C 2 66 BRCA TCGA-E9-A24A SLIT2 SNP Missense_Mutation 4 20541090 G T 48 100 BRCA TCGA-E9-A24A DMP1 SNP Missense_Mutation 4 88584083 G A 37 56 BRCA TCGA-E9-A24A PCDHGA5 SNP Missense_Mutation 5 140744030 G A 40 86 BRCA TCGA-E9-A24A SLC2A12 INS Frame_Shift_Ins 6 134323224 - A 29 87 BRCA TCGA-E9-A24A OR5V1 SNP Nonsense_Mutation 6 29323445 G T 36 47 BRCA TCGA-E9-A24A LCA5 SNP Missense_Mutation 6 80222980 C A 32 72 BRCA TCGA-E9-A24A NDUFB9 SNP Missense_Mutation 8 125555378 A G 8 89 BRCA TCGA-E9-A24A CTNNAL1 SNP Missense_Mutation 9 111734985 T A 60 57 BRCA TCGA-E9-A24A TMEM8C SNP Silent 9 136384005 C T 23 0 BRCA TCGA-E9-A24A MAMDC4 SNP Missense_Mutation 9 139753216 G A 39 48 BRCA TCGA-E9-A295 PRAMEF12 SNP Missense_Mutation 1 12837483 G A 38 40 BRCA TCGA-E9-A295 SEC16B SNP Missense_Mutation 1 177929522 G T 41 55 BRCA TCGA-E9-A295 KIF21B SNP Splice_site 1 200944041 G T 46 98 BRCA TCGA-E9-A295 CR1 SNP Silent 1 207791576 G A 47 49 BRCA TCGA-E9-A295 OBSCN SNP Silent 1 228482539 G A 39 29 BRCA TCGA-E9-A295 OR2L13 SNP Missense_Mutation 1 248262934 C A 30 51 BRCA TCGA-E9-A295 L1TD1 SNP Missense_Mutation 1 62673207 G T 46 50 BRCA TCGA-E9-A295 RNF214 SNP Missense_Mutation 11 117109661 A C 9 62 BRCA TCGA-E9-A295 EXT2 SNP Missense_Mutation 11 44130752 G A 37 75 BRCA TCGA-E9-A295 PTPRJ SNP Missense_Mutation 11 48175418 G A 38 97 BRCA TCGA-E9-A295 OR4C46 SNP Nonsense_Mutation 11 51515861 G T 41 62 BRCA TCGA-E9-A295 INTS4 SNP Silent 11 77702202 C T 23 48 BRCA TCGA-E9-A295 DENND5A SNP Missense_Mutation 11 9202357 C T 23 96 BRCA TCGA-E9-A295 NUAK1 SNP Missense_Mutation 12 106480580 G T 40 58 BRCA TCGA-E9-A295 FBXW8 SNP Missense_Mutation 12 117426610 A C 10 81 BRCA TCGA-E9-A295 NOS1 SNP Missense_Mutation 12 117662851 G T 46 99 BRCA TCGA-E9-A295 PDZRN4 SNP Missense_Mutation 12 41966546 T A 50 48 BRCA TCGA-E9-A295 OR10AD1 SNP Silent 12 48596743 G A 39 40 BRCA TCGA-E9-A295 DIP2B SNP Missense_Mutation 12 51108327 G C 48 99 BRCA TCGA-E9-A295 KRT83 SNP Silent 12 52714811 G A 40 51 BRCA TCGA-E9-A295 MFAP5 SNP Missense_Mutation 12 8814696 G A 37 55 BRCA TCGA-E9-A295 NBEA SNP Missense_Mutation 13 35716469 G T 46 56 BRCA TCGA-E9-A295 ATP10A SNP Missense_Mutation 15 25953412 T C 54 59 BRCA TCGA-E9-A295 C15orf55 SNP Missense_Mutation 15 34646055 G C 45 77 BRCA TCGA-E9-A295 THAP10 SNP Missense_Mutation 15 71175114 C T 19 50 BRCA TCGA-E9-A295 XYLT1 SNP Missense_Mutation 16 17202698 C T 23 52 BRCA TCGA-E9-A295 ARL6IP1 SNP Splice_site 16 18810156 C G 26 97 BRCA TCGA-E9-A295 ZNF267 SNP Missense_Mutation 16 31926615 C G 18 66 BRCA TCGA-E9-A295 HELZ SNP Silent 17 65074605 G A 42 63 BRCA TCGA-E9-A295 GLP2R SNP Missense_Mutation 17 9774137 G C 33 59 BRCA TCGA-E9-A295 TMED1 SNP Missense_Mutation 19 10943683 C T 23 9 BRCA TCGA-E9-A295 ZNF546 SNP Nonsense_Mutation 19 40521668 G T 41 67 BRCA TCGA-E9-A295 ZNF528 SNP Nonsense_Mutation 19 52919654 G T 35 70 BRCA TCGA-E9-A295 TBC1D8 SNP Missense_Mutation 2 101650087 G C 41 85 BRCA TCGA-E9-A295 MGAT5 SNP Missense_Mutation 2 135107444 C T 31 85 BRCA TCGA-E9-A295 SCN9A SNP Missense_Mutation 2 167163024 C T 17 100 BRCA TCGA-E9-A295 XIRP2 SNP Nonsense_Mutation 2 168104572 G T 33 54 BRCA TCGA-E9-A295 TTN SNP Missense_Mutation 2 179604866 G T 46 44 BRCA TCGA-E9-A295 WDR35 SNP Missense_Mutation 2 20145695 G C 40 67 BRCA TCGA-E9-A295 ELMOD3 SNP Missense_Mutation 2 85617353 G A 39 51 BRCA TCGA-E9-A295 TGIF2-C20ORF24 SNP Silent 20 35236207 C T 32 60 BRCA TCGA-E9-A295 KRTAP10-7 SNP Missense_Mutation 21 46021138 T C 50 44 BRCA TCGA-E9-A295 XBP1 DEL Frame_Shift_Del 22 29195125 CT - 20 91 BRCA TCGA-E9-A295 NXF5 SNP Splice_Site 23 101096303 C A 28 65 BRCA TCGA-E9-A295 SAGE1 SNP Missense_Mutation 23 134988302 G T 34 40 BRCA TCGA-E9-A295 ARHGEF6 SNP Missense_Mutation 23 135750295 C T 32 92 BRCA TCGA-E9-A295 ABCD1 SNP Missense_Mutation 23 152991469 G A 40 93 BRCA TCGA-E9-A295 MBTPS2 SNP Missense_Mutation 23 21887782 G A 36 81 BRCA TCGA-E9-A295 DMD SNP Missense_Mutation 23 32716093 C A 30 81 BRCA TCGA-E9-A295 CXorf22 SNP Splice_Site 23 35989890 G C 42 76 BRCA TCGA-E9-A295 NLGN4X SNP Missense_Mutation 23 5811039 G T 39 89 BRCA TCGA-E9-A295 PIK3CA SNP Missense_Mutation 3 178952085 A T 8 91 BRCA TCGA-E9-A295 MUC4 SNP Splice_site 3 195486130 G T 45 51 BRCA TCGA-E9-A295 PAK2 SNP Missense_Mutation 3 196547338 G A 39 98 BRCA TCGA-E9-A295 IL17RD SNP Missense_Mutation 3 57132299 C T 19 97 BRCA TCGA-E9-A295 FOXP1 DEL Frame_Shift_Del 3 71027086 AG - 7 94 BRCA TCGA-E9-A295 FGG SNP Nonsense_Mutation 4 155533233 C A 32 70 BRCA TCGA-E9-A295 PCDHB12 SNP Silent 5 140589271 C T 32 51 BRCA TCGA-E9-A295 AFAP1L1 SNP Missense_Mutation 5 148702277 T C 54 85 BRCA TCGA-E9-A295 PHACTR2 SNP Missense_Mutation 6 144033228 G T 33 94 BRCA TCGA-E9-A295 MAP3K4 SNP Silent 6 161510422 G A 36 68 BRCA TCGA-E9-A295 AGPAT4 SNP Missense_Mutation 6 161575278 A G 9 88 BRCA TCGA-E9-A295 RNF8 SNP Silent 6 37349063 T C 49 64 BRCA TCGA-E9-A295 CUL7 SNP Silent 6 43019030 C G 29 56 BRCA TCGA-E9-A295 AUTS2 SNP Nonsense_Mutation 7 69364341 G T 33 74 BRCA TCGA-E9-A295 AUTS2 SNP Silent 7 70252256 C T 19 71 BRCA TCGA-E9-A295 TRPS1 SNP Silent 8 116426722 C A 27 57 BRCA TCGA-E9-A295 ADCY8 SNP Missense_Mutation 8 132051949 G T 34 53 BRCA TCGA-E9-A295 ZNF251 SNP Missense_Mutation 8 145948581 A G 5 56 BRCA TCGA-E9-A295 ANKRD20A4 SNP Missense_Mutation 9 69423641 T G 51 65 BRCA TCGA-E9-A295 TRPM3 SNP Missense_Mutation 9 73152199 G A 40 83 BRCA TCGA-EW-A1IW SPAG17 SNP Missense_Mutation 1 118598416 A T 12 39 BRCA TCGA-EW-A1IW SMG5 SNP Splice_site 1 156238081 C T 23 83 BRCA TCGA-EW-A1IW ASAP3 SNP Missense_Mutation 1 23765288 G T 47 98 BRCA TCGA-EW-A1IW RYR2 SNP Missense_Mutation 1 237802483 G T 34 59 BRCA TCGA-EW-A1IW FMN2 SNP Silent 1 240370290 C G 29 50 BRCA TCGA-EW-A1IW KIF26B SNP Nonsense_Mutation 1 245704136 G T 37 83 BRCA TCGA-EW-A1IW EPS15 SNP Nonsense_Mutation 1 51910583 G C 45 87 BRCA TCGA-EW-A1IW PTCHD3 SNP Missense_Mutation 10 27702459 C T 19 51 BRCA TCGA-EW-A1IW MARCH8 SNP Silent 10 45956754 C T 32 74 BRCA TCGA-EW-A1IW ZBED5 SNP Nonsense_Mutation 11 10874686 G A 45 71 BRCA TCGA-EW-A1IW MUC5B SNP Missense_Mutation 11 1272374 C G 30 48 BRCA TCGA-EW-A1IW ZBTB44 SNP Silent 11 130109788 G A 45 92 BRCA TCGA-EW-A1IW LDLRAD3 SNP Silent 11 36119974 A G 3 39 BRCA TCGA-EW-A1IW UBQLN3 SNP Silent 11 5529922 G A 47 56 BRCA TCGA-EW-A1IW ST5 SNP Silent 11 8737243 C T 29 58 BRCA TCGA-EW-A1IW ESPL1 SNP Missense_Mutation 12 53679978 G A 34 56 BRCA TCGA-EW-A1IW FLT3 SNP Silent 13 28644705 G A 33 57 BRCA TCGA-EW-A1IW OR4N5 SNP Missense_Mutation 14 20612762 C T 31 57 BRCA TCGA-EW-A1IW FOXA1 SNP Missense_Mutation 14 38061193 A T 3 85 BRCA TCGA-EW-A1IW SIPA1L1 SNP Silent 14 72139139 C T 29 56 BRCA TCGA-EW-A1IW TTLL5 SNP Nonsense_Mutation 14 76349121 C T 21 84 BRCA TCGA-EW-A1IW FBN1 SNP Missense_Mutation 15 48796053 C T 29 70 BRCA TCGA-EW-A1IW NUBP1 SNP Missense_Mutation 16 10837736 C T 29 61 BRCA TCGA-EW-A1IW IL4R SNP Silent 16 27375082 G A 33 53 BRCA TCGA-EW-A1IW CBFB SNP Missense_Mutation 16 67070624 G T 37 93 BRCA TCGA-EW-A1IW CDH15 SNP Silent 16 89254603 C T 21 65 BRCA TCGA-EW-A1IW ABR SNP Silent 17 1028605 C T 27 52 BRCA TCGA-EW-A1IW DNAH9 SNP Silent 17 11726132 G A 36 62 BRCA TCGA-EW-A1IW KRT24 SNP Missense_Mutation 17 38855709 C G 31 72 BRCA TCGA-EW-A1IW ATP6V0A1 SNP Silent 17 40653307 G A 45 67 BRCA TCGA-EW-A1IW ST6GALNAC1 SNP Silent 17 74623304 C T 29 54 BRCA TCGA-EW-A1IW EPOR SNP Missense_Mutation 19 11488689 G T 33 51 BRCA TCGA-EW-A1IW OR7C1 SNP Silent 19 14910316 G A 45 45 BRCA TCGA-EW-A1IW MAST3 SNP Missense_Mutation 19 18234421 G A 45 96 BRCA TCGA-EW-A1IW EEF2 SNP Missense_Mutation 19 3978146 G A 39 64 BRCA TCGA-EW-A1IW MUC16 SNP Missense_Mutation 19 8977652 C G 32 68 BRCA TCGA-EW-A1IW IL1RL2 SNP Missense_Mutation 2 102835485 A G 4 55 BRCA TCGA-EW-A1IW RGPD3 SNP Missense_Mutation 2 107050797 C T 29 76 BRCA TCGA-EW-A1IW GREB1 SNP Missense_Mutation 2 11727547 C T 23 62 BRCA TCGA-EW-A1IW ARHGAP15 SNP Missense_Mutation 2 143973974 C G 32 78 BRCA TCGA-EW-A1IW TTN SNP Missense_Mutation 2 179425385 C T 29 100 BRCA TCGA-EW-A1IW MDH1B SNP Missense_Mutation 2 207610374 G T 48 46 BRCA TCGA-EW-A1IW CPS1 SNP Missense_Mutation 2 211465381 C T 29 96 BRCA TCGA-EW-A1IW IQCA1 SNP Nonsense_Mutation 2 237405937 G A 40 82 BRCA TCGA-EW-A1IW RPRD1B SNP Missense_Mutation 20 36668886 C G 30 54 BRCA TCGA-EW-A1IW ADNP SNP Missense_Mutation 20 49508731 A T 5 56 BRCA TCGA-EW-A1IW COL9A3 SNP Nonsense_Mutation 20 61458599 C T 23 49 BRCA TCGA-EW-A1IW SIK1 SNP Silent 21 44838354 G A 35 56 BRCA TCGA-EW-A1IW MYH9 SNP Silent 22 36737526 G A 35 71 BRCA TCGA-EW-A1IW WWC3 SNP Silent 23 10058871 C T 29 53 BRCA TCGA-EW-A1IW RBMXL3 SNP Missense_Mutation 23 114425884 G A 41 56 BRCA TCGA-EW-A1IW GNL3L SNP Missense_Mutation 23 54577449 G T 38 81 BRCA TCGA-EW-A1IW TAF1 SNP Silent 23 70617194 C T 29 52 BRCA TCGA-EW-A1IW IRAK2 SNP Missense_Mutation 3 10254979 C T 25 77 BRCA TCGA-EW-A1IW KIAA2018 SNP Missense_Mutation 3 113374108 C T 32 97 BRCA TCGA-EW-A1IW CASR SNP Missense_Mutation 3 122003458 G A 39 80 BRCA TCGA-EW-A1IW GYG1 SNP Splice_Site 3 148714088 G C 33 97 BRCA TCGA-EW-A1IW PIK3CA SNP Missense_Mutation 3 178936095 A G 7 90 BRCA TCGA-EW-A1IW FXR1 SNP Silent 3 180685879 T G 55 47 BRCA TCGA-EW-A1IW C3orf26 SNP Splice_Site 3 99886581 G A 36 88 BRCA TCGA-EW-A1IW TBCK SNP Missense_Mutation 4 107170104 C G 32 97 BRCA TCGA-EW-A1IW PCDHB4 SNP Missense_Mutation 5 140502124 C G 31 49 BRCA TCGA-EW-A1IW ADAMTS2 SNP Missense_Mutation 5 178541264 G C 34 70 BRCA TCGA-EW-A1IW NLN SNP Missense_Mutation 5 65084087 G C 33 55 BRCA TCGA-EW-A1IW FAM169A SNP Silent 5 74096761 A G 2 64 BRCA TCGA-EW-A1IW SYNE1 SNP Splice_Site 6 152570399 T C 53 87 BRCA TCGA-EW-A1IW PRPF4B SNP Missense_Mutation 6 4031906 G A 36 69 BRCA TCGA-EW-A1IW DST SNP Missense_Mutation 6 56358848 T A 62 90 BRCA TCGA-EW-A1IW SNAP91 SNP Splice_Site 6 84372142 C G 32 98 BRCA TCGA-EW-A1IW TRA2A SNP Missense_Mutation 7 23545770 C T 29 95 BRCA TCGA-EW-A1IW NAPRT1 SNP Missense_Mutation 8 144657482 T C 62 60 BRCA TCGA-EW-A1IW XPO7 SNP Silent 8 21842187 G A 39 45 BRCA TCGA-EW-A1IW PPP1R3B SNP Nonsense_Mutation 8 8998783 G A 37 84 BRCA TCGA-EW-A1IW DOLK INS Splice_site 9 131709581 - T 8 60 BRCA TCGA-EW-A1IW ALDH1A1 SNP Silent 9 75533709 C T 30 55 BRCA TCGA-EW-A1IW HABP4 SNP Silent 9 99252296 G A 39 48 BRCA TCGA-EW-A1IX GPR158 SNP Missense_Mutation 10 25885597 G A 37 100 BRCA TCGA-EW-A1IX GNPTAB SNP Missense_Mutation 12 102151069 C T 32 100 BRCA TCGA-EW-A1IX FAM186A DNP Missense_Mutation 12 50747334 GC TT 34 46 BRCA TCGA-EW-A1IX KPNA3 SNP Nonsense_Mutation 13 50296658 G A 45 100 BRCA TCGA-EW-A1IX RAD51B SNP Missense_Mutation 14 68292285 G T 33 57 BRCA TCGA-EW-A1IX B3GNT9 SNP Silent 16 67184131 G C 34 53 BRCA TCGA-EW-A1IX ZZEF1 SNP Missense_Mutation 17 3975955 C G 32 66 BRCA TCGA-EW-A1IX TOB1 SNP Missense_Mutation 17 48940939 G A 45 98 BRCA TCGA-EW-A1IX ZNF701 SNP Splice_site 19 53079273 G A 47 59 BRCA TCGA-EW-A1IX MYO7B SNP Missense_Mutation 2 128394164 C G 29 83 BRCA TCGA-EW-A1IX MPP4 DEL Frame_Shift_Del 2 202529007 AC - 2 53 BRCA TCGA-EW-A1IX TTI1 SNP Silent 20 36641777 G A 33 81 BRCA TCGA-EW-A1IX DLG3 SNP Nonsense_Mutation 23 69722031 C G 29 93 BRCA TCGA-EW-A1IX SERPINI2 SNP Silent 3 167183403 C G 21 66 BRCA TCGA-EW-A1IX PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-EW-A1IX SLIT2 SNP Missense_Mutation 4 20555534 G C 47 100 BRCA TCGA-EW-A1IX TBX20 SNP Missense_Mutation 7 35244129 C T 30 79 BRCA TCGA-EW-A1IX PGAM2 SNP Missense_Mutation 7 44104972 C G 29 98 BRCA TCGA-EW-A1IX ZC3H3 SNP Silent 8 144621351 G A 36 54 BRCA TCGA-EW-A1IX PAPPA SNP Missense_Mutation 9 118997720 G A 40 62 BRCA TCGA-EW-A1IX FAM22G SNP Missense_Mutation 9 99699543 C T 29 44 BRCA TCGA-EW-A1IY RGSL1 SNP Missense_Mutation 1 182517845 C A 24 64 BRCA TCGA-EW-A1IY KIF21B SNP Missense_Mutation 1 200969064 C T 26 58 BRCA TCGA-EW-A1IY TARBP1 SNP Missense_Mutation 1 234566023 G C 45 71 BRCA TCGA-EW-A1IY RPS6KA1 SNP Missense_Mutation 1 26882081 G A 39 89 BRCA TCGA-EW-A1IY TACC2 SNP Silent 10 123845984 G A 47 54 BRCA TCGA-EW-A1IY HTRA1 SNP Missense_Mutation 10 124269648 G A 37 94 BRCA TCGA-EW-A1IY CDH23 SNP Missense_Mutation 10 73501658 G A 37 99 BRCA TCGA-EW-A1IY CRTAC1 SNP Silent 10 99655057 G T 37 48 BRCA TCGA-EW-A1IY PRR5L SNP Silent 11 36453429 C T 32 55 BRCA TCGA-EW-A1IY ZMYM2 DEL Frame_Shift_Del 13 20625607 CT - 20 72 BRCA TCGA-EW-A1IY AKT1 SNP Missense_Mutation 14 105246551 C T 30 95 BRCA TCGA-EW-A1IY TRIP11 SNP Silent 14 92470730 C T 30 100 BRCA TCGA-EW-A1IY MAGEL2 SNP Missense_Mutation 15 23889494 G C 33 56 BRCA TCGA-EW-A1IY SCAMP5 SNP Silent 15 75305052 C T 29 85 BRCA TCGA-EW-A1IY IFT140 SNP Silent 16 1570681 C T 32 60 BRCA TCGA-EW-A1IY SETD1A DEL In_Frame_Del 16 30982802 CTCCTCATCCTCCTC - 28 61 BRCA TCGA-EW-A1IY CTCF SNP Missense_Mutation 16 67645412 A G 14 92 BRCA TCGA-EW-A1IY ZNF358 SNP Missense_Mutation 19 7584348 G A 37 55 BRCA TCGA-EW-A1IY ABCA12 SNP Silent 2 215818580 G A 45 84 BRCA TCGA-EW-A1IY PEX13 SNP Missense_Mutation 2 61258802 C G 21 85 BRCA TCGA-EW-A1IY WDR44 SNP Missense_Mutation 23 117578415 G A 37 49 BRCA TCGA-EW-A1IY FLNB SNP Missense_Mutation 3 58154202 G T 34 95 BRCA TCGA-EW-A1IY LTV1 SNP Silent 6 144184640 G A 33 51 BRCA TCGA-EW-A1IY ULBP2 SNP Nonsense_Mutation 6 150267715 C G 29 52 BRCA TCGA-EW-A1IY HIST1H1T SNP Missense_Mutation 6 26108248 C T 31 53 BRCA TCGA-EW-A1IY ALAD SNP Silent 9 116155798 T C 59 26 BRCA TCGA-EW-A1IY PAPPA SNP Missense_Mutation 9 119106938 G A 39 50 BRCA TCGA-EW-A1IZ AMY2B SNP Silent 1 104117917 A G 2 71 BRCA TCGA-EW-A1IZ APITD1 SNP Missense_Mutation 1 10502382 C A 17 58 BRCA TCGA-EW-A1IZ PLOD1 SNP Missense_Mutation 1 12030842 C T 19 100 BRCA TCGA-EW-A1IZ SSR2 SNP Missense_Mutation 1 155984778 G T 35 73 BRCA TCGA-EW-A1IZ MEF2D SNP Missense_Mutation 1 156446980 T C 55 87 BRCA TCGA-EW-A1IZ CDK11B SNP Missense_Mutation 1 1573880 C T 28 89 BRCA TCGA-EW-A1IZ AGMAT SNP Missense_Mutation 1 15906613 G A 43 96 BRCA TCGA-EW-A1IZ DUSP27 SNP Missense_Mutation 1 167086745 C T 27 82 BRCA TCGA-EW-A1IZ TIPRL SNP Silent 1 168168159 T C 55 45 BRCA TCGA-EW-A1IZ CEP350 SNP Silent 1 179959671 A G 15 61 BRCA TCGA-EW-A1IZ CACNA1E SNP Missense_Mutation 1 181690990 G A 48 98 BRCA TCGA-EW-A1IZ ZBTB41 DEL Frame_Shift_Del 1 197169434 GAGG - 33 87 BRCA TCGA-EW-A1IZ EIF4G3 SNP Missense_Mutation 1 21180137 C T 32 91 BRCA TCGA-EW-A1IZ CENPF SNP Missense_Mutation 1 214814654 G A 45 50 BRCA TCGA-EW-A1IZ KCNK2 SNP Missense_Mutation 1 215342695 C T 19 80 BRCA TCGA-EW-A1IZ BROX SNP Missense_Mutation 1 222906001 C A 24 97 BRCA TCGA-EW-A1IZ CELA3B SNP Silent 1 22310304 C T 23 45 BRCA TCGA-EW-A1IZ CNIH3 SNP Missense_Mutation 1 224872505 G A 39 79 BRCA TCGA-EW-A1IZ OBSCN SNP Missense_Mutation 1 228481236 C T 23 53 BRCA TCGA-EW-A1IZ HIST3H3 SNP Missense_Mutation 1 228612752 G A 38 92 BRCA TCGA-EW-A1IZ OR2T11 SNP Missense_Mutation 1 248790131 A G 11 61 BRCA TCGA-EW-A1IZ DHDDS SNP Silent 1 26764736 G A 42 46 BRCA TCGA-EW-A1IZ SFN SNP Silent 1 27189737 C T 28 50 BRCA TCGA-EW-A1IZ DNALI1 SNP Missense_Mutation 1 38023344 C T 22 49 BRCA TCGA-EW-A1IZ MANEAL SNP Silent 1 38265584 C T 28 57 BRCA TCGA-EW-A1IZ LEPRE1 SNP Missense_Mutation 1 43215952 G A 40 79 BRCA TCGA-EW-A1IZ CCDC24 SNP Missense_Mutation 1 44461500 G A 43 46 BRCA TCGA-EW-A1IZ PDZK1IP1 SNP Missense_Mutation 1 47650716 A G 6 44 BRCA TCGA-EW-A1IZ ECHDC2 SNP Missense_Mutation 1 53362256 C T 23 49 BRCA TCGA-EW-A1IZ C1orf123 DEL In_Frame_Del 1 53681666 CTC - 32 49 BRCA TCGA-EW-A1IZ NPHP4 SNP Missense_Mutation 1 5925191 C T 28 74 BRCA TCGA-EW-A1IZ RBMXL1 SNP Nonsense_Mutation 1 89448795 G A 40 51 BRCA TCGA-EW-A1IZ DNTTIP2 SNP Silent 1 94342201 C T 27 47 BRCA TCGA-EW-A1IZ ALG14 SNP Missense_Mutation 1 95492695 T G 56 64 BRCA TCGA-EW-A1IZ SNX7 SNP Missense_Mutation 1 99157130 C T 19 77 BRCA TCGA-EW-A1IZ CWF19L1 SNP Missense_Mutation 10 102006652 T C 50 57 BRCA TCGA-EW-A1IZ SFXN3 SNP Missense_Mutation 10 102795363 C T 23 76 BRCA TCGA-EW-A1IZ WDR37 SNP Missense_Mutation 10 1151084 C T 19 87 BRCA TCGA-EW-A1IZ HSPA12A SNP Silent 10 118458152 C T 27 37 BRCA TCGA-EW-A1IZ WDR11 SNP Missense_Mutation 10 122643389 A G 4 54 BRCA TCGA-EW-A1IZ TACC2 SNP Missense_Mutation 10 123848088 G A 44 50 BRCA TCGA-EW-A1IZ CLRN3 SNP Silent 10 129676623 G A 39 0 BRCA TCGA-EW-A1IZ JAKMIP3 SNP Silent 10 133946851 C T 31 65 BRCA TCGA-EW-A1IZ ADAM8 SNP Missense_Mutation 10 135084508 C T 23 96 BRCA TCGA-EW-A1IZ CACNB2 SNP Silent 10 18827198 C A 22 46 BRCA TCGA-EW-A1IZ NEBL SNP Silent 10 21097452 C T 19 41 BRCA TCGA-EW-A1IZ SPAG6 SNP Silent 10 22680768 G T 43 49 BRCA TCGA-EW-A1IZ MASTL SNP Missense_Mutation 10 27447506 A G 1 89 BRCA TCGA-EW-A1IZ LYZL1 SNP Silent 10 29580826 T C 63 47 BRCA TCGA-EW-A1IZ FAM170B SNP Missense_Mutation 10 50340002 T C 63 51 BRCA TCGA-EW-A1IZ SEC24C SNP Missense_Mutation 10 75510956 A G 5 80 BRCA TCGA-EW-A1IZ NRG3 SNP Missense_Mutation 10 83637750 G A 40 50 BRCA TCGA-EW-A1IZ LGI1 SNP Missense_Mutation 10 95557468 G A 48 84 BRCA TCGA-EW-A1IZ SIK3 SNP Missense_Mutation 11 116734457 G A 34 94 BRCA TCGA-EW-A1IZ OR6X1 SNP Missense_Mutation 11 123624868 C T 27 71 BRCA TCGA-EW-A1IZ NFRKB SNP Missense_Mutation 11 129739508 C T 17 75 BRCA TCGA-EW-A1IZ SIRT3 SNP Missense_Mutation 11 233199 G T 35 70 BRCA TCGA-EW-A1IZ EXT2 SNP Missense_Mutation 11 44228469 T A 50 93 BRCA TCGA-EW-A1IZ OR4X1 SNP Missense_Mutation 11 48285598 C A 28 63 BRCA TCGA-EW-A1IZ RNH1 SNP Silent 11 502136 G A 48 52 BRCA TCGA-EW-A1IZ OR10AG1 SNP Missense_Mutation 11 55735641 C T 26 51 BRCA TCGA-EW-A1IZ PRKCDBP SNP Silent 11 6340459 G A 39 46 BRCA TCGA-EW-A1IZ DCHS1 SNP Missense_Mutation 11 6653279 C T 27 62 BRCA TCGA-EW-A1IZ SSH3 SNP Silent 11 67079319 G A 35 79 BRCA TCGA-EW-A1IZ TYR SNP Missense_Mutation 11 88911273 G A 42 79 BRCA TCGA-EW-A1IZ STAB2 SNP Splice_Site 12 104129268 G T 35 78 BRCA TCGA-EW-A1IZ CHST11 SNP Missense_Mutation 12 105151273 C T 27 63 BRCA TCGA-EW-A1IZ PWP1 SNP Missense_Mutation 12 108090359 C T 20 71 BRCA TCGA-EW-A1IZ PLBD2 SNP Silent 12 113826338 G A 40 38 BRCA TCGA-EW-A1IZ NOS1 SNP Splice_Site 12 117680511 C T 24 95 BRCA TCGA-EW-A1IZ RNF34 SNP Silent 12 121853973 G A 40 27 BRCA TCGA-EW-A1IZ PITPNM2 SNP Missense_Mutation 12 123519107 G A 42 82 BRCA TCGA-EW-A1IZ WBP11 SNP Missense_Mutation 12 14948019 A G 6 88 BRCA TCGA-EW-A1IZ STK38L SNP Missense_Mutation 12 27475300 G T 47 99 BRCA TCGA-EW-A1IZ CAPRIN2 SNP Splice_Site 12 30904069 T C 53 79 BRCA TCGA-EW-A1IZ YARS2 SNP Missense_Mutation 12 32903765 G A 45 77 BRCA TCGA-EW-A1IZ ALG10 SNP Silent 12 34179103 A G 10 53 BRCA TCGA-EW-A1IZ SCAF11 INS Frame_Shift_Ins 12 46320516 - T 32 73 BRCA TCGA-EW-A1IZ GALNT8 SNP Missense_Mutation 12 4870281 T C 58 80 BRCA TCGA-EW-A1IZ GALNT6 SNP Silent 12 51754571 C T 28 49 BRCA TCGA-EW-A1IZ SP1 SNP Missense_Mutation 12 53775933 T C 63 86 BRCA TCGA-EW-A1IZ GPR84 SNP Nonsense_Mutation 12 54757017 G A 40 53 BRCA TCGA-EW-A1IZ SMARCC2 SNP Missense_Mutation 12 56572801 C T 26 93 BRCA TCGA-EW-A1IZ TIMELESS SNP Missense_Mutation 12 56814908 G A 38 55 BRCA TCGA-EW-A1IZ USP15 DEL Frame_Shift_Del 12 62786055 TT - 56 92 BRCA TCGA-EW-A1IZ DYRK2 SNP Missense_Mutation 12 68050943 G A 39 67 BRCA TCGA-EW-A1IZ SPSB2 INS Frame_Shift_Ins 12 6981614 - G 55 49 BRCA TCGA-EW-A1IZ MYF6 SNP Missense_Mutation 12 81102372 C T 28 83 BRCA TCGA-EW-A1IZ CCDC168 SNP Silent 13 103382857 T C 60 47 BRCA TCGA-EW-A1IZ SPACA7 SNP Missense_Mutation 13 113088826 G T 35 49 BRCA TCGA-EW-A1IZ ATP4B SNP Missense_Mutation 13 114303781 C T 19 66 BRCA TCGA-EW-A1IZ XPO4 INS Frame_Shift_Ins 13 21362688 - T 16 91 BRCA TCGA-EW-A1IZ MIPEP SNP Silent 13 24460601 A G 16 42 BRCA TCGA-EW-A1IZ MTUS2 SNP Silent 13 29600608 C T 17 52 BRCA TCGA-EW-A1IZ DCLK1 SNP Missense_Mutation 13 36445388 T C 53 79 BRCA TCGA-EW-A1IZ PROSER1 SNP Missense_Mutation 13 39603474 T C 57 53 BRCA TCGA-EW-A1IZ SUCLA2 SNP Silent 13 48563103 G A 37 60 BRCA TCGA-EW-A1IZ SETDB2 SNP Missense_Mutation 13 50050946 A G 14 70 BRCA TCGA-EW-A1IZ MYCBP2 SNP Missense_Mutation 13 77669522 C T 25 99 BRCA TCGA-EW-A1IZ AP5M1 SNP Nonsense_Mutation 14 57749707 C T 31 64 BRCA TCGA-EW-A1IZ NEK9 SNP Nonsense_Mutation 14 75572697 G A 40 67 BRCA TCGA-EW-A1IZ FAM181A INS Frame_Shift_Ins 14 94391640 - T 32 49 BRCA TCGA-EW-A1IZ APBA2 SNP Missense_Mutation 15 29367161 G A 38 83 BRCA TCGA-EW-A1IZ RYR3 SNP Silent 15 34049768 C A 24 54 BRCA TCGA-EW-A1IZ RYR3 SNP Silent 15 34156378 G A 34 48 BRCA TCGA-EW-A1IZ RFX7 SNP Silent 15 56388765 G A 40 43 BRCA TCGA-EW-A1IZ MNS1 SNP Missense_Mutation 15 56723678 A G 6 53 BRCA TCGA-EW-A1IZ SMAD3 SNP Missense_Mutation 15 67358560 A G 7 66 BRCA TCGA-EW-A1IZ MYO9A SNP Missense_Mutation 15 72119094 T C 60 88 BRCA TCGA-EW-A1IZ CPEB1 SNP Nonsense_Mutation 15 83240148 G A 39 60 BRCA TCGA-EW-A1IZ ANPEP SNP Missense_Mutation 15 90348325 G A 46 57 BRCA TCGA-EW-A1IZ MAN2A2 SNP Missense_Mutation 15 91456857 G A 39 70 BRCA TCGA-EW-A1IZ CACNA1H SNP Missense_Mutation 16 1248638 C G 28 75 BRCA TCGA-EW-A1IZ ACSM5 SNP Nonsense_Mutation 16 20448431 C T 23 47 BRCA TCGA-EW-A1IZ SH2B1 SNP Missense_Mutation 16 28884971 G A 40 55 BRCA TCGA-EW-A1IZ ZNF213 SNP Missense_Mutation 16 3188811 G T 47 56 BRCA TCGA-EW-A1IZ SEC14L5 SNP Missense_Mutation 16 5046950 G A 38 98 BRCA TCGA-EW-A1IZ RPGRIP1L DEL In_Frame_Del 16 53706790 TTC - 52 61 BRCA TCGA-EW-A1IZ WWP2 SNP Missense_Mutation 16 69965781 G T 43 100 BRCA TCGA-EW-A1IZ MBTPS1 SNP Missense_Mutation 16 84088175 A G 10 80 BRCA TCGA-EW-A1IZ MYH3 SNP Silent 17 10549037 C T 23 4 BRCA TCGA-EW-A1IZ NCOR1 SNP Splice_Site 17 15995175 A G 14 84 BRCA TCGA-EW-A1IZ KIAA0664 SNP Missense_Mutation 17 2597292 T C 62 91 BRCA TCGA-EW-A1IZ PIGS SNP Missense_Mutation 17 26881988 G A 39 64 BRCA TCGA-EW-A1IZ PHF12 SNP Missense_Mutation 17 27239621 A T 4 48 BRCA TCGA-EW-A1IZ AP2B1 SNP Splice_site 17 33953640 C T 25 55 BRCA TCGA-EW-A1IZ CDC6 DEL Frame_Shift_Del 17 38449856 AT - 8 54 BRCA TCGA-EW-A1IZ KRT40 SNP Silent 17 39137136 C T 17 51 BRCA TCGA-EW-A1IZ ZZEF1 SNP Silent 17 3919737 G A 34 76 BRCA TCGA-EW-A1IZ KRT33B SNP Silent 17 39525757 C T 23 44 BRCA TCGA-EW-A1IZ DNAJC7 SNP Missense_Mutation 17 40141457 C T 26 98 BRCA TCGA-EW-A1IZ BCAS3 SNP Silent 17 58988000 G A 42 44 BRCA TCGA-EW-A1IZ TANC2 SNP Silent 17 61176555 C T 27 53 BRCA TCGA-EW-A1IZ TANC2 SNP Silent 17 61498332 A G 5 50 BRCA TCGA-EW-A1IZ SCN4A SNP Missense_Mutation 17 62019291 G A 39 63 BRCA TCGA-EW-A1IZ EIF4A3 SNP Missense_Mutation 17 78109862 C T 27 87 BRCA TCGA-EW-A1IZ ROCK1 SNP Missense_Mutation 18 18539823 G A 41 100 BRCA TCGA-EW-A1IZ CABYR SNP Missense_Mutation 18 21735866 C T 19 48 BRCA TCGA-EW-A1IZ LPIN2 SNP Missense_Mutation 18 2929124 C T 31 84 BRCA TCGA-EW-A1IZ KLHL14 SNP Splice_site 18 30267118 C A 24 97 BRCA TCGA-EW-A1IZ SETBP1 SNP Missense_Mutation 18 42532994 C T 18 72 BRCA TCGA-EW-A1IZ ZCCHC2 SNP Nonsense_Mutation 18 60207019 C T 27 82 BRCA TCGA-EW-A1IZ ZNF516 SNP Missense_Mutation 18 74092170 C T 27 38 BRCA TCGA-EW-A1IZ DOT1L SNP Missense_Mutation 19 2185914 C A 20 71 BRCA TCGA-EW-A1IZ WTIP SNP Missense_Mutation 19 34991089 G A 42 81 BRCA TCGA-EW-A1IZ C19orf71 SNP Nonsense_Mutation 19 3543380 C G 17 80 BRCA TCGA-EW-A1IZ DMKN SNP Splice_site 19 35994348 T C 58 56 BRCA TCGA-EW-A1IZ ARHGAP33 SNP Missense_Mutation 19 36278850 T C 54 59 BRCA TCGA-EW-A1IZ RYR1 SNP Missense_Mutation 19 38987176 G A 42 98 BRCA TCGA-EW-A1IZ ZNF780B SNP Silent 19 40542427 G A 37 49 BRCA TCGA-EW-A1IZ MEGF8 SNP Missense_Mutation 19 42853706 G A 38 86 BRCA TCGA-EW-A1IZ SAE1 SNP Nonsense_Mutation 19 47653513 C T 23 67 BRCA TCGA-EW-A1IZ DHX34 SNP Nonsense_Mutation 19 47884112 C T 21 78 BRCA TCGA-EW-A1IZ PPFIA3 SNP Missense_Mutation 19 49651945 A G 16 88 BRCA TCGA-EW-A1IZ ZNF415 SNP Missense_Mutation 19 53612925 G A 40 54 BRCA TCGA-EW-A1IZ FUT5 SNP Missense_Mutation 19 5867314 C A 24 29 BRCA TCGA-EW-A1IZ ZNF132 SNP Missense_Mutation 19 58946279 C T 27 47 BRCA TCGA-EW-A1IZ KLF11 SNP Missense_Mutation 2 10188309 C T 28 58 BRCA TCGA-EW-A1IZ SLC9A2 SNP Missense_Mutation 2 103321037 A G 10 79 BRCA TCGA-EW-A1IZ CCDC138 SNP Silent 2 109432417 T C 64 51 BRCA TCGA-EW-A1IZ C2orf76 SNP Missense_Mutation 2 120060116 T C 60 77 BRCA TCGA-EW-A1IZ SNTG2 SNP Silent 2 1312322 C T 31 50 BRCA TCGA-EW-A1IZ LRP1B SNP Silent 2 141607771 G A 37 44 BRCA TCGA-EW-A1IZ TPO SNP Missense_Mutation 2 1520723 G A 38 59 BRCA TCGA-EW-A1IZ IFIH1 SNP Missense_Mutation 2 163130328 T C 59 79 BRCA TCGA-EW-A1IZ METAP1D SNP Missense_Mutation 2 172930997 C A 24 86 BRCA TCGA-EW-A1IZ HOXD8 SNP Silent 2 176996277 C T 19 49 BRCA TCGA-EW-A1IZ CWC22 SNP Missense_Mutation 2 180809917 G A 41 66 BRCA TCGA-EW-A1IZ FRZB SNP Missense_Mutation 2 183703303 G A 47 84 BRCA TCGA-EW-A1IZ ORMDL1 SNP Missense_Mutation 2 190647159 T C 49 76 BRCA TCGA-EW-A1IZ APOB SNP Missense_Mutation 2 21233643 G A 42 53 BRCA TCGA-EW-A1IZ ASPRV1 SNP Missense_Mutation 2 70188297 G A 35 64 BRCA TCGA-EW-A1IZ ADD2 SNP Missense_Mutation 2 70905920 C A 26 95 BRCA TCGA-EW-A1IZ ADD2 SNP Missense_Mutation 2 70906014 G A 42 95 BRCA TCGA-EW-A1IZ GNLY SNP Missense_Mutation 2 85922455 C T 32 52 BRCA TCGA-EW-A1IZ KIAA1211L SNP Splice_site 2 99449325 C A 24 82 BRCA TCGA-EW-A1IZ VPS16 SNP Silent 20 2840965 G T 47 50 BRCA TCGA-EW-A1IZ REM1 SNP Missense_Mutation 20 30064292 G A 39 88 BRCA TCGA-EW-A1IZ BPIFB4 SNP Missense_Mutation 20 31671634 G A 40 57 BRCA TCGA-EW-A1IZ ZMYND8 SNP Missense_Mutation 20 45855964 C T 31 88 BRCA TCGA-EW-A1IZ RAE1 SNP Missense_Mutation 20 55940493 G A 38 98 BRCA TCGA-EW-A1IZ BRWD1 SNP Missense_Mutation 21 40570950 A T 12 57 BRCA TCGA-EW-A1IZ IL17RA SNP Missense_Mutation 22 17583062 C T 18 46 BRCA TCGA-EW-A1IZ SLC25A18 SNP Missense_Mutation 22 18070764 G A 39 72 BRCA TCGA-EW-A1IZ SUSD2 SNP Missense_Mutation 22 24584283 G T 35 55 BRCA TCGA-EW-A1IZ TNRC6B SNP Splice_Site 22 40717093 G T 33 100 BRCA TCGA-EW-A1IZ ADSL SNP Silent 22 40755272 G A 34 53 BRCA TCGA-EW-A1IZ SAMM50 SNP Missense_Mutation 22 44385035 C A 24 81 BRCA TCGA-EW-A1IZ CDPF1 SNP Missense_Mutation 22 46640993 G A 40 50 BRCA TCGA-EW-A1IZ TTLL8 SNP Missense_Mutation 22 50471764 G A 34 79 BRCA TCGA-EW-A1IZ MOV10L1 SNP Silent 22 50584153 C T 19 32 BRCA TCGA-EW-A1IZ NXT2 SNP Missense_Mutation 23 108780219 C T 20 41 BRCA TCGA-EW-A1IZ RBMXL3 SNP Silent 23 114425534 T C 51 35 BRCA TCGA-EW-A1IZ GPR112 SNP Silent 23 135441601 A G 7 55 BRCA TCGA-EW-A1IZ GPM6B SNP Missense_Mutation 23 13835019 T C 56 77 BRCA TCGA-EW-A1IZ TMEM185A SNP Missense_Mutation 23 148690503 A G 6 62 BRCA TCGA-EW-A1IZ MPP1 SNP Missense_Mutation 23 154007615 T C 55 86 BRCA TCGA-EW-A1IZ RPS6KA3 SNP Nonsense_Mutation 23 20213261 G A 37 65 BRCA TCGA-EW-A1IZ ZNF157 SNP Silent 23 47272048 C T 27 54 BRCA TCGA-EW-A1IZ HUWE1 SNP Silent 23 53589093 C T 24 79 BRCA TCGA-EW-A1IZ FAM120C SNP Missense_Mutation 23 54112279 G A 39 60 BRCA TCGA-EW-A1IZ APEX2 SNP Missense_Mutation 23 55029489 C T 27 74 BRCA TCGA-EW-A1IZ OPHN1 SNP Missense_Mutation 23 67273542 G T 42 51 BRCA TCGA-EW-A1IZ MED12 SNP Silent 23 70357623 C T 26 62 BRCA TCGA-EW-A1IZ RGAG4 SNP Missense_Mutation 23 71350651 C T 26 69 BRCA TCGA-EW-A1IZ CITED1 SNP Missense_Mutation 23 71521829 G A 34 51 BRCA TCGA-EW-A1IZ PPARG SNP Missense_Mutation 3 12421355 G A 37 87 BRCA TCGA-EW-A1IZ KBTBD12 INS Frame_Shift_Ins 3 127642256 - GT 7 40 BRCA TCGA-EW-A1IZ MBD4 SNP Missense_Mutation 3 129158619 C T 19 42 BRCA TCGA-EW-A1IZ ASTE1 DEL Frame_Shift_Del 3 130743497 AA - 5 51 BRCA TCGA-EW-A1IZ DBR1 INS In_Frame_Ins 3 137880738 - CAT 46 45 BRCA TCGA-EW-A1IZ FGD5 SNP Silent 3 14964007 C T 27 45 BRCA TCGA-EW-A1IZ MED12L SNP Silent 3 151095876 C T 28 47 BRCA TCGA-EW-A1IZ MED12L SNP Missense_Mutation 3 151100490 C T 27 100 BRCA TCGA-EW-A1IZ PIK3CA SNP Splice_site 3 178938775 T A 50 89 BRCA TCGA-EW-A1IZ CLCN2 SNP Missense_Mutation 3 184069902 G T 33 63 BRCA TCGA-EW-A1IZ CLCN2 SNP Splice_Site 3 184072690 A G 6 91 BRCA TCGA-EW-A1IZ TGFBR2 SNP Silent 3 30713659 C T 19 38 BRCA TCGA-EW-A1IZ TRANK1 SNP Missense_Mutation 3 36896783 C T 27 91 BRCA TCGA-EW-A1IZ LRRN1 SNP Missense_Mutation 3 3886447 G A 40 100 BRCA TCGA-EW-A1IZ DALRD3 SNP Silent 3 49055971 C T 22 71 BRCA TCGA-EW-A1IZ VPRBP SNP Missense_Mutation 3 51452257 C T 25 100 BRCA TCGA-EW-A1IZ PPP3CA SNP Missense_Mutation 4 102004357 T G 56 76 BRCA TCGA-EW-A1IZ IL15 SNP Missense_Mutation 4 142651103 T A 50 62 BRCA TCGA-EW-A1IZ FAM200B SNP Nonsense_Mutation 4 15689207 C T 31 57 BRCA TCGA-EW-A1IZ LDB2 SNP Missense_Mutation 4 16899985 G A 37 92 BRCA TCGA-EW-A1IZ ODZ3 SNP Silent 4 183676017 A G 5 23 BRCA TCGA-EW-A1IZ GBA3 SNP Silent 4 22749085 T C 57 45 BRCA TCGA-EW-A1IZ HGFAC SNP Silent 4 3445881 C T 27 32 BRCA TCGA-EW-A1IZ N4BP2 SNP Silent 4 40123163 G A 40 49 BRCA TCGA-EW-A1IZ SHISA3 SNP Silent 4 42403144 G A 34 70 BRCA TCGA-EW-A1IZ PIGG SNP Missense_Mutation 4 515734 C T 19 45 BRCA TCGA-EW-A1IZ EVC SNP Silent 4 5721019 G A 38 30 BRCA TCGA-EW-A1IZ PPAT SNP Silent 4 57268337 T C 51 43 BRCA TCGA-EW-A1IZ EVC SNP Missense_Mutation 4 5795342 T C 51 59 BRCA TCGA-EW-A1IZ UBA6 SNP Missense_Mutation 4 68528872 C T 27 81 BRCA TCGA-EW-A1IZ LIN54 SNP Missense_Mutation 4 83891570 T C 49 50 BRCA TCGA-EW-A1IZ WDFY3 SNP Silent 4 85654705 G A 34 68 BRCA TCGA-EW-A1IZ BRD8 SNP Missense_Mutation 5 137476347 G A 40 47 BRCA TCGA-EW-A1IZ PCDHB2 SNP Missense_Mutation 5 140475245 C T 31 63 BRCA TCGA-EW-A1IZ PCDHGB2 SNP Nonsense_Mutation 5 140741848 C T 27 49 BRCA TCGA-EW-A1IZ PCDHGA9 SNP Missense_Mutation 5 140783157 C T 19 56 BRCA TCGA-EW-A1IZ PCDHGC5 SNP Missense_Mutation 5 140869817 A G 5 60 BRCA TCGA-EW-A1IZ RNF14 SNP Silent 5 141359789 G A 40 40 BRCA TCGA-EW-A1IZ LARP1 SNP Silent 5 154170243 T C 55 57 BRCA TCGA-EW-A1IZ CYFIP2 SNP Missense_Mutation 5 156766240 A G 14 91 BRCA TCGA-EW-A1IZ KCNMB1 SNP Missense_Mutation 5 169805721 G A 38 68 BRCA TCGA-EW-A1IZ RUFY1 SNP Missense_Mutation 5 179028899 C T 27 73 BRCA TCGA-EW-A1IZ MTMR12 SNP Silent 5 32230235 G A 37 38 BRCA TCGA-EW-A1IZ NIPBL SNP Nonsense_Mutation 5 36985782 C T 31 60 BRCA TCGA-EW-A1IZ OSMR SNP Silent 5 38886285 T C 54 46 BRCA TCGA-EW-A1IZ MOCS2 SNP Missense_Mutation 5 52402960 C T 31 78 BRCA TCGA-EW-A1IZ SKIV2L2 SNP Missense_Mutation 5 54624574 T C 59 60 BRCA TCGA-EW-A1IZ HTR1A SNP Silent 5 63257403 G A 33 64 BRCA TCGA-EW-A1IZ ARHGEF28 SNP Missense_Mutation 5 73200210 C A 23 94 BRCA TCGA-EW-A1IZ F2R SNP Silent 5 76028893 G A 46 63 BRCA TCGA-EW-A1IZ GPR98 SNP Missense_Mutation 5 90151694 A G 6 69 BRCA TCGA-EW-A1IZ KIAA0825 DEL In_Frame_Del 5 93727356 CTC - 32 69 BRCA TCGA-EW-A1IZ RFESD SNP Silent 5 94991896 T A 62 53 BRCA TCGA-EW-A1IZ SYCP2L SNP Silent 6 10911066 A G 8 50 BRCA TCGA-EW-A1IZ ARMC2 SNP Missense_Mutation 6 109190033 A G 9 75 BRCA TCGA-EW-A1IZ ARMC2 SNP Missense_Mutation 6 109215690 C T 27 47 BRCA TCGA-EW-A1IZ FAM162B SNP Missense_Mutation 6 117083229 C T 27 59 BRCA TCGA-EW-A1IZ ARHGAP18 SNP Missense_Mutation 6 130031253 A G 6 74 BRCA TCGA-EW-A1IZ RMND1 SNP Missense_Mutation 6 151766618 T G 64 46 BRCA TCGA-EW-A1IZ OPRM1 SNP Missense_Mutation 6 154412166 C T 31 49 BRCA TCGA-EW-A1IZ LPA SNP Splice_Site 6 161071369 C T 19 64 BRCA TCGA-EW-A1IZ MBOAT1 SNP Missense_Mutation 6 20152948 C T 27 99 BRCA TCGA-EW-A1IZ HIST1H2BB SNP Silent 6 26043595 C A 23 51 BRCA TCGA-EW-A1IZ NKAPL SNP Missense_Mutation 6 28227370 G A 39 39 BRCA TCGA-EW-A1IZ ZSCAN12 SNP Missense_Mutation 6 28359098 T C 57 43 BRCA TCGA-EW-A1IZ TRERF1 SNP Silent 6 42204015 C T 23 25 BRCA TCGA-EW-A1IZ RUNX2 SNP Missense_Mutation 6 45399682 G A 39 100 BRCA TCGA-EW-A1IZ CDYL SNP Silent 6 4943948 C T 28 66 BRCA TCGA-EW-A1IZ DSP SNP Missense_Mutation 6 7575559 C T 31 69 BRCA TCGA-EW-A1IZ ELOVL4 SNP Missense_Mutation 6 80656915 A G 7 58 BRCA TCGA-EW-A1IZ ZNF292 SNP Nonsense_Mutation 6 87966306 C T 21 64 BRCA TCGA-EW-A1IZ MDN1 SNP Missense_Mutation 6 90461233 C A 24 50 BRCA TCGA-EW-A1IZ UFL1 SNP Missense_Mutation 6 97001369 C T 19 79 BRCA TCGA-EW-A1IZ MUC12 INS Frame_Shift_Ins 7 100647332 - A 26 61 BRCA TCGA-EW-A1IZ SYPL1 SNP Silent 7 105733467 C T 27 46 BRCA TCGA-EW-A1IZ THSD7A SNP Silent 7 11464340 C T 25 50 BRCA TCGA-EW-A1IZ CTTNBP2 SNP Missense_Mutation 7 117513445 C T 31 64 BRCA TCGA-EW-A1IZ FLNC SNP Missense_Mutation 7 128478072 G A 38 76 BRCA TCGA-EW-A1IZ DGKB SNP Splice_Site 7 14758165 A G 14 79 BRCA TCGA-EW-A1IZ EZH2 SNP Silent 7 148525902 G A 40 39 BRCA TCGA-EW-A1IZ KCNH2 SNP Missense_Mutation 7 150654410 C T 31 81 BRCA TCGA-EW-A1IZ ABCF2 SNP Missense_Mutation 7 150915925 T C 56 87 BRCA TCGA-EW-A1IZ RBM33 SNP Missense_Mutation 7 155567691 A G 16 78 BRCA TCGA-EW-A1IZ NFE2L3 SNP Silent 7 26225088 T C 63 48 BRCA TCGA-EW-A1IZ CREB5 SNP Missense_Mutation 7 28610052 C T 31 56 BRCA TCGA-EW-A1IZ PION SNP Missense_Mutation 7 76984734 C T 29 50 BRCA TCGA-EW-A1IZ HGF SNP Silent 7 81339534 C T 31 56 BRCA TCGA-EW-A1IZ HEATR2 SNP Missense_Mutation 7 819661 C G 28 67 BRCA TCGA-EW-A1IZ PCLO SNP Missense_Mutation 7 82763887 A C 14 46 BRCA TCGA-EW-A1IZ OCM2 SNP Missense_Mutation 7 97616394 G A 38 62 BRCA TCGA-EW-A1IZ BAIAP2L1 SNP Silent 7 97939890 G A 40 51 BRCA TCGA-EW-A1IZ TRRAP SNP Silent 7 98574180 G A 38 20 BRCA TCGA-EW-A1IZ ODF1 SNP Missense_Mutation 8 103572819 C T 27 58 BRCA TCGA-EW-A1IZ DCSTAMP SNP Missense_Mutation 8 105367367 A G 7 50 BRCA TCGA-EW-A1IZ PKHD1L1 SNP Missense_Mutation 8 110424608 C T 18 64 BRCA TCGA-EW-A1IZ DEFB136 SNP Missense_Mutation 8 11831477 G A 43 56 BRCA TCGA-EW-A1IZ ZHX1 SNP Missense_Mutation 8 124267675 A G 2 53 BRCA TCGA-EW-A1IZ ST3GAL1 SNP Missense_Mutation 8 134477024 G A 41 67 BRCA TCGA-EW-A1IZ TOP1MT SNP Silent 8 144406751 C T 25 31 BRCA TCGA-EW-A1IZ ARHGAP39 SNP Silent 8 145830970 C T 30 57 BRCA TCGA-EW-A1IZ LOXL2 SNP Silent 8 23198633 G A 40 55 BRCA TCGA-EW-A1IZ HOOK3 INS Frame_Shift_Ins 8 42868496 - AG 29 98 BRCA TCGA-EW-A1IZ NCOA2 SNP Missense_Mutation 8 71126143 T A 62 79 BRCA TCGA-EW-A1IZ CNGB3 SNP Missense_Mutation 8 87683247 G A 38 60 BRCA TCGA-EW-A1IZ CDK5RAP2 SNP Missense_Mutation 9 123220813 C T 27 48 BRCA TCGA-EW-A1IZ TTC16 SNP Missense_Mutation 9 130485513 C T 27 74 BRCA TCGA-EW-A1IZ C8G SNP Silent 9 139840387 G T 41 53 BRCA TCGA-EW-A1IZ PNPLA7 SNP Missense_Mutation 9 140361796 C T 25 51 BRCA TCGA-EW-A1IZ NFX1 SNP Missense_Mutation 9 33294960 T C 51 44 BRCA TCGA-EW-A1IZ FAM219A SNP Missense_Mutation 9 34402458 C T 19 95 BRCA TCGA-EW-A1IZ PGM5 SNP Missense_Mutation 9 71144508 T C 50 84 BRCA TCGA-EW-A1IZ TMC1 SNP Missense_Mutation 9 75445589 G A 46 69 BRCA TCGA-EW-A1IZ IARS SNP Missense_Mutation 9 94991394 G A 35 54 BRCA TCGA-EW-A1IZ FANCC SNP Silent 9 97873907 A G 10 34 BRCA TCGA-EW-A1IZ ERCC6L2 SNP Missense_Mutation 9 98703810 A G 4 65 BRCA TCGA-EW-A1IZ CTSL2 SNP Missense_Mutation 9 99797876 C T 27 91 BRCA TCGA-EW-A1J1 DPT SNP Missense_Mutation 1 168683522 A T 6 91 BRCA TCGA-EW-A1J1 NAV1 SNP Missense_Mutation 1 201757631 C T 23 100 BRCA TCGA-EW-A1J1 SF1 SNP Silent 11 64535092 C T 31 57 BRCA TCGA-EW-A1J1 EHD1 SNP Missense_Mutation 11 64645813 A C 3 72 BRCA TCGA-EW-A1J1 UHRF1BP1L SNP Silent 12 100452034 T A 63 54 BRCA TCGA-EW-A1J1 ATP2A2 SNP Silent 12 110780236 C T 19 49 BRCA TCGA-EW-A1J1 RYR3 SNP Silent 15 33954810 G A 37 40 BRCA TCGA-EW-A1J1 CLEC16A SNP Silent 16 11071088 G T 41 53 BRCA TCGA-EW-A1J1 TPSB2 SNP Missense_Mutation 16 1279438 C T 27 46 BRCA TCGA-EW-A1J1 NCOR1 DEL Frame_Shift_Del 17 16029431 TTTCT - 56 62 BRCA TCGA-EW-A1J1 MYCBPAP SNP Missense_Mutation 17 48594830 C A 26 53 BRCA TCGA-EW-A1J1 EPG5 SNP Missense_Mutation 18 43484051 C T 27 82 BRCA TCGA-EW-A1J1 UNC80 SNP Silent 2 210681761 G A 38 39 BRCA TCGA-EW-A1J1 PLB1 SNP Silent 2 28796125 C A 21 51 BRCA TCGA-EW-A1J1 SOS1 SNP Silent 2 39239446 G A 41 61 BRCA TCGA-EW-A1J1 SNRNP200 SNP Missense_Mutation 2 96959238 G T 45 100 BRCA TCGA-EW-A1J1 ELFN2 SNP Missense_Mutation 22 37770887 G A 39 53 BRCA TCGA-EW-A1J1 POLA1 SNP Splice_site 23 24722586 G T 35 68 BRCA TCGA-EW-A1J1 HDX SNP Missense_Mutation 23 83723776 G T 48 93 BRCA TCGA-EW-A1J1 PIK3CA SNP Missense_Mutation 3 178952075 A T 9 91 BRCA TCGA-EW-A1J1 NIPAL4 SNP Missense_Mutation 5 156899736 C T 18 100 BRCA TCGA-EW-A1J1 MAP3K1 INS Frame_Shift_Ins 5 56177010 - ATAG 61 47 BRCA TCGA-EW-A1J1 NSA2 DNP Missense_Mutation 5 74066543 AA GC 9 90 BRCA TCGA-EW-A1J1 ALDH5A1 SNP Silent 6 24528350 G C 48 40 BRCA TCGA-EW-A1J1 TREM1 SNP Missense_Mutation 6 41250151 G T 39 52 BRCA TCGA-EW-A1J2 ATP8B2 SNP Missense_Mutation 1 154303923 C T 23 84 BRCA TCGA-EW-A1J2 SCMH1 SNP Silent 1 41582666 C T 19 40 BRCA TCGA-EW-A1J2 C10orf120 SNP Missense_Mutation 10 124459255 T C 53 50 BRCA TCGA-EW-A1J2 ZMIZ1 SNP Missense_Mutation 10 81063837 G T 44 100 BRCA TCGA-EW-A1J2 TLE3 SNP Missense_Mutation 15 70345629 G T 48 76 BRCA TCGA-EW-A1J2 POLG INS Frame_Shift_Ins 15 89866675 - T 6 91 BRCA TCGA-EW-A1J2 POLG INS In_Frame_Ins 15 89866678 - CCTTAC 58 91 BRCA TCGA-EW-A1J2 CBFB SNP Missense_Mutation 16 67100607 T A 52 89 BRCA TCGA-EW-A1J2 CDH1 SNP Nonsense_Mutation 16 68857367 A T 5 77 BRCA TCGA-EW-A1J2 G6PC SNP Silent 17 41063380 C T 23 42 BRCA TCGA-EW-A1J2 KIF2B SNP Silent 17 51901204 C T 31 49 BRCA TCGA-EW-A1J2 KIF19 SNP Silent 17 72341085 C T 27 33 BRCA TCGA-EW-A1J2 PIGN SNP Missense_Mutation 18 59749915 G A 37 92 BRCA TCGA-EW-A1J2 LCT SNP Nonsense_Mutation 2 136548358 C T 18 78 BRCA TCGA-EW-A1J2 EIF2S2 SNP Missense_Mutation 20 32678367 C T 32 99 BRCA TCGA-EW-A1J2 TP53TG5 SNP Missense_Mutation 20 44003687 G C 41 51 BRCA TCGA-EW-A1J2 BRS3 SNP Missense_Mutation 23 135570652 C T 23 100 BRCA TCGA-EW-A1J2 PIK3CA SNP Missense_Mutation 3 178952085 A G 8 91 BRCA TCGA-EW-A1J2 KCNMB3 SNP Silent 3 178984451 C T 30 55 BRCA TCGA-EW-A1J2 MUC4 SNP Missense_Mutation 3 195510937 G C 46 49 BRCA TCGA-EW-A1J2 OR5K2 SNP Silent 3 98217148 C T 32 64 BRCA TCGA-EW-A1J2 TNXB SNP Splice_Site 6 32010230 A C 6 72 BRCA TCGA-EW-A1J2 CLDN12 SNP Missense_Mutation 7 90042451 T A 58 69 BRCA TCGA-EW-A1J2 PEG10 SNP Missense_Mutation 7 94293359 G A 37 56 BRCA TCGA-EW-A1J2 CRISPLD1 SNP Missense_Mutation 8 75927084 C T 27 70 BRCA TCGA-EW-A1J2 TESK1 SNP Missense_Mutation 9 35608979 A G 4 38 BRCA TCGA-EW-A1J3 NBPF9 SNP Missense_Mutation 1 144823868 T G 57 47 BRCA TCGA-EW-A1J3 NES SNP Missense_Mutation 1 156639358 T C 60 46 BRCA TCGA-EW-A1J3 CCDC6 SNP Missense_Mutation 10 61552827 G A 40 98 BRCA TCGA-EW-A1J3 BIVM SNP Splice_site 13 103490993 A G 12 51 BRCA TCGA-EW-A1J3 SHISA9 SNP Missense_Mutation 16 13010598 A G 11 76 BRCA TCGA-EW-A1J3 CDH1 SNP Nonsense_Mutation 16 68772218 C T 21 53 BRCA TCGA-EW-A1J3 HPR DEL Frame_Shift_Del 16 72107680 TG - 51 55 BRCA TCGA-EW-A1J3 EFCAB5 SNP Missense_Mutation 17 28378166 G C 42 53 BRCA TCGA-EW-A1J3 ZPBP2 SNP Splice_Site 17 38031506 G A 35 81 BRCA TCGA-EW-A1J3 MED24 SNP Missense_Mutation 17 38189359 C T 24 100 BRCA TCGA-EW-A1J3 MED24 SNP Missense_Mutation 17 38189431 C G 30 100 BRCA TCGA-EW-A1J3 MED24 SNP Missense_Mutation 17 38189690 C G 28 52 BRCA TCGA-EW-A1J3 TIMM50 SNP Missense_Mutation 19 39980425 A C 6 56 BRCA TCGA-EW-A1J3 VAV1 SNP Missense_Mutation 19 6850694 G A 44 64 BRCA TCGA-EW-A1J3 MUC16 SNP Silent 19 9038120 T A 51 46 BRCA TCGA-EW-A1J3 MARCO SNP Missense_Mutation 2 119750834 C A 28 64 BRCA TCGA-EW-A1J3 TANK SNP Missense_Mutation 2 162087536 C T 27 50 BRCA TCGA-EW-A1J3 SPHKAP SNP Missense_Mutation 2 228884249 A C 9 51 BRCA TCGA-EW-A1J3 OTOF SNP Missense_Mutation 2 26697524 C T 22 100 BRCA TCGA-EW-A1J3 MAVS SNP Silent 20 3835301 G A 36 50 BRCA TCGA-EW-A1J3 PIWIL3 SNP Silent 22 25158416 C T 32 38 BRCA TCGA-EW-A1J3 MUC4 SNP Missense_Mutation 3 195505801 G A 46 34 BRCA TCGA-EW-A1J3 ABCE1 SNP Missense_Mutation 4 146038513 A G 16 93 BRCA TCGA-EW-A1J3 RAP1GDS1 SNP Missense_Mutation 4 99355161 A G 13 61 BRCA TCGA-EW-A1J3 SLC6A19 SNP Nonsense_Mutation 5 1216682 C T 27 48 BRCA TCGA-EW-A1J3 FLT4 SNP Missense_Mutation 5 180056385 T C 58 75 BRCA TCGA-EW-A1J3 ZFR SNP Silent 5 32364331 C T 32 56 BRCA TCGA-EW-A1J3 PRDM1 SNP Missense_Mutation 6 106536124 G A 33 59 BRCA TCGA-EW-A1J3 NQO2 SNP Missense_Mutation 6 3019762 G C 34 52 BRCA TCGA-EW-A1J3 RADIL SNP Splice_Site 7 4917234 A C 6 88 BRCA TCGA-EW-A1J3 VPS13B SNP Missense_Mutation 8 100789055 A G 2 79 BRCA TCGA-EW-A1J5 CELSR2 SNP Silent 1 109812082 G T 45 64 BRCA TCGA-EW-A1J5 CELSR2 SNP Nonsense_Mutation 1 109813147 G T 45 83 BRCA TCGA-EW-A1J5 CELSR2 SNP Missense_Mutation 1 109813557 G A 40 97 BRCA TCGA-EW-A1J5 CELSR2 SNP Missense_Mutation 1 109813628 G C 41 97 BRCA TCGA-EW-A1J5 CELSR2 SNP Missense_Mutation 1 109813902 G C 45 83 BRCA TCGA-EW-A1J5 SPAG17 SNP Missense_Mutation 1 118558619 G C 41 55 BRCA TCGA-EW-A1J5 PLOD1 SNP Missense_Mutation 1 12030796 G C 45 100 BRCA TCGA-EW-A1J5 CCNL2 SNP Missense_Mutation 1 1328173 C T 29 89 BRCA TCGA-EW-A1J5 NBPF10 SNP Nonsense_Mutation 1 145368577 G T 45 56 BRCA TCGA-EW-A1J5 RNF115 SNP Missense_Mutation 1 145663210 C G 32 61 BRCA TCGA-EW-A1J5 ANP32E SNP Missense_Mutation 1 150199026 C G 30 76 BRCA TCGA-EW-A1J5 ECM1 SNP Missense_Mutation 1 150482631 C G 32 56 BRCA TCGA-EW-A1J5 ANXA9 SNP Silent 1 150967079 G A 45 59 BRCA TCGA-EW-A1J5 FLG2 SNP Missense_Mutation 1 152325364 G C 33 73 BRCA TCGA-EW-A1J5 CHTOP SNP Missense_Mutation 1 153617600 G A 37 76 BRCA TCGA-EW-A1J5 KAZN SNP Silent 1 15439019 C T 29 54 BRCA TCGA-EW-A1J5 SYT11 SNP Missense_Mutation 1 155838164 C T 32 98 BRCA TCGA-EW-A1J5 CCT3 SNP Nonsense_Mutation 1 156303431 G A 45 80 BRCA TCGA-EW-A1J5 OR10K2 SNP Silent 1 158390018 C T 29 52 BRCA TCGA-EW-A1J5 NIT1 SNP Missense_Mutation 1 161088976 G A 48 77 BRCA TCGA-EW-A1J5 ADAMTS4 SNP Silent 1 161166344 C A 29 59 BRCA TCGA-EW-A1J5 FCGR3B SNP Missense_Mutation 1 161596055 G A 45 39 BRCA TCGA-EW-A1J5 F5 SNP Missense_Mutation 1 169510871 G C 34 50 BRCA TCGA-EW-A1J5 MYOC SNP Missense_Mutation 1 171621262 C T 29 49 BRCA TCGA-EW-A1J5 SUCO SNP Missense_Mutation 1 172571319 C T 29 71 BRCA TCGA-EW-A1J5 RASAL2 SNP Missense_Mutation 1 178410736 G C 33 88 BRCA TCGA-EW-A1J5 ARHGEF10L SNP Silent 1 17950986 C T 31 55 BRCA TCGA-EW-A1J5 TOR1AIP1 SNP Missense_Mutation 1 179887000 G C 33 76 BRCA TCGA-EW-A1J5 CEP350 SNP Missense_Mutation 1 179989616 C T 29 99 BRCA TCGA-EW-A1J5 TRMT1L SNP Missense_Mutation 1 185120963 C G 29 56 BRCA TCGA-EW-A1J5 IVNS1ABP SNP Silent 1 185276197 C T 25 52 BRCA TCGA-EW-A1J5 HMCN1 SNP Missense_Mutation 1 186057115 G A 41 100 BRCA TCGA-EW-A1J5 TPR SNP Missense_Mutation 1 186303607 G C 41 78 BRCA TCGA-EW-A1J5 PTGS2 SNP Missense_Mutation 1 186648206 C T 29 100 BRCA TCGA-EW-A1J5 NR5A2 SNP Missense_Mutation 1 200017590 C T 29 96 BRCA TCGA-EW-A1J5 PIK3C2B SNP Silent 1 204412635 C A 29 57 BRCA TCGA-EW-A1J5 HP1BP3 SNP Missense_Mutation 1 21072124 C G 32 68 BRCA TCGA-EW-A1J5 PTPN14 SNP Missense_Mutation 1 214557650 C G 32 45 BRCA TCGA-EW-A1J5 DISP1 SNP Missense_Mutation 1 223177316 G C 41 86 BRCA TCGA-EW-A1J5 SUSD4 SNP Missense_Mutation 1 223396894 C T 31 91 BRCA TCGA-EW-A1J5 CAPN8 SNP Silent 1 223718144 G A 45 52 BRCA TCGA-EW-A1J5 HIST3H3 SNP Missense_Mutation 1 228612849 C T 29 92 BRCA TCGA-EW-A1J5 ABCB10 SNP Missense_Mutation 1 229683381 G C 33 75 BRCA TCGA-EW-A1J5 RBM34 SNP Silent 1 235316075 C A 29 65 BRCA TCGA-EW-A1J5 RYR2 SNP Missense_Mutation 1 237664064 G A 45 100 BRCA TCGA-EW-A1J5 ZP4 SNP Missense_Mutation 1 238053239 C T 29 53 BRCA TCGA-EW-A1J5 OR2L8 SNP Silent 1 248113011 C G 29 53 BRCA TCGA-EW-A1J5 OR2AK2 SNP Missense_Mutation 1 248129439 C A 18 68 BRCA TCGA-EW-A1J5 OR2T2 SNP Silent 1 248616623 C T 29 51 BRCA TCGA-EW-A1J5 EPB41 SNP Missense_Mutation 1 29314172 G C 33 88 BRCA TCGA-EW-A1J5 NPHP4 SNP Missense_Mutation 1 5925232 G C 41 95 BRCA TCGA-EW-A1J5 CHD5 SNP Missense_Mutation 1 6202253 G A 37 70 BRCA TCGA-EW-A1J5 PDE4B SNP Silent 1 66834514 C T 21 65 BRCA TCGA-EW-A1J5 SGIP1 SNP Missense_Mutation 1 67155912 C A 30 99 BRCA TCGA-EW-A1J5 SORCS1 SNP Silent 10 108536409 C T 29 61 BRCA TCGA-EW-A1J5 PNLIPRP3 SNP Nonsense_Mutation 10 118196375 C T 29 60 BRCA TCGA-EW-A1J5 PTPRE SNP Missense_Mutation 10 129866396 G A 37 89 BRCA TCGA-EW-A1J5 MKI67 SNP Silent 10 129901071 C T 26 51 BRCA TCGA-EW-A1J5 TUBGCP2 SNP Missense_Mutation 10 135106636 C G 30 96 BRCA TCGA-EW-A1J5 ARMC3 SNP Missense_Mutation 10 23250863 C G 32 44 BRCA TCGA-EW-A1J5 DIP2C SNP Missense_Mutation 10 323392 C G 30 100 BRCA TCGA-EW-A1J5 GJD4 SNP Missense_Mutation 10 35896648 C G 32 61 BRCA TCGA-EW-A1J5 ERCC6 SNP Missense_Mutation 10 50678569 C G 28 56 BRCA TCGA-EW-A1J5 TSPAN15 SNP Missense_Mutation 10 71255361 C A 30 54 BRCA TCGA-EW-A1J5 KIAA0913 SNP Silent 10 75559813 G A 45 68 BRCA TCGA-EW-A1J5 SORBS1 SNP Missense_Mutation 10 97110968 C T 32 100 BRCA TCGA-EW-A1J5 OPALIN SNP Missense_Mutation 10 98108050 G A 33 63 BRCA TCGA-EW-A1J5 CD3E SNP Missense_Mutation 11 118179150 G A 33 50 BRCA TCGA-EW-A1J5 MICALCL SNP Missense_Mutation 11 12315771 C T 30 53 BRCA TCGA-EW-A1J5 SCN3B SNP Missense_Mutation 11 123508916 C G 31 98 BRCA TCGA-EW-A1J5 NCAPD3 SNP Missense_Mutation 11 134029897 C G 29 100 BRCA TCGA-EW-A1J5 USH1C SNP Splice_site 11 17522697 C G 30 79 BRCA TCGA-EW-A1J5 PKP3 SNP Missense_Mutation 11 403681 C T 23 73 BRCA TCGA-EW-A1J5 OR52K2 SNP Missense_Mutation 11 4471264 C T 32 81 BRCA TCGA-EW-A1J5 NR1H3 SNP Silent 11 47289528 C T 29 53 BRCA TCGA-EW-A1J5 OR4C16 SNP Missense_Mutation 11 55340509 G C 33 50 BRCA TCGA-EW-A1J5 OR5I1 SNP Silent 11 55703532 G A 45 48 BRCA TCGA-EW-A1J5 OR5F1 SNP Missense_Mutation 11 55761969 T C 50 49 BRCA TCGA-EW-A1J5 OR5T2 SNP Silent 11 56000014 G A 33 53 BRCA TCGA-EW-A1J5 TRIM22 SNP Silent 11 5718549 C T 29 48 BRCA TCGA-EW-A1J5 ZP1 SNP Missense_Mutation 11 60637194 C G 32 53 BRCA TCGA-EW-A1J5 COX8A SNP Silent 11 63742177 C T 28 63 BRCA TCGA-EW-A1J5 CNIH2 SNP Silent 11 66050245 G A 45 53 BRCA TCGA-EW-A1J5 NPAS4 SNP Silent 11 66188755 C T 30 56 BRCA TCGA-EW-A1J5 NPAS4 SNP Silent 11 66192503 C T 29 88 BRCA TCGA-EW-A1J5 MRPL11 SNP Silent 11 66203553 C T 32 76 BRCA TCGA-EW-A1J5 SPTBN2 SNP Missense_Mutation 11 66460511 C T 31 68 BRCA TCGA-EW-A1J5 LRP5 SNP Missense_Mutation 11 68181258 G A 45 99 BRCA TCGA-EW-A1J5 SYTL2 SNP Missense_Mutation 11 85445351 C T 29 71 BRCA TCGA-EW-A1J5 CLEC2A SNP Missense_Mutation 12 10066206 C G 29 64 BRCA TCGA-EW-A1J5 STAB2 SNP Splice_Site 12 104146997 G C 33 95 BRCA TCGA-EW-A1J5 ACACB SNP Splice_Site 12 109673117 G C 33 96 BRCA TCGA-EW-A1J5 FOXN4 SNP Missense_Mutation 12 109725248 G C 45 73 BRCA TCGA-EW-A1J5 UBE3B SNP Silent 12 109958979 C G 32 47 BRCA TCGA-EW-A1J5 RPH3A SNP Missense_Mutation 12 113285625 G A 33 94 BRCA TCGA-EW-A1J5 CCDC60 SNP Missense_Mutation 12 119960749 G A 33 51 BRCA TCGA-EW-A1J5 CAMKK2 SNP Missense_Mutation 12 121693401 C T 32 94 BRCA TCGA-EW-A1J5 RILPL1 SNP Missense_Mutation 12 123983136 C G 32 68 BRCA TCGA-EW-A1J5 DNAH10 SNP Silent 12 124397850 C T 29 100 BRCA TCGA-EW-A1J5 DNAH10 SNP Missense_Mutation 12 124408387 C G 29 100 BRCA TCGA-EW-A1J5 SFSWAP SNP Missense_Mutation 12 132237743 G A 41 100 BRCA TCGA-EW-A1J5 FKBP4 SNP Silent 12 2910381 G A 33 70 BRCA TCGA-EW-A1J5 DNM1L SNP Nonsense_Mutation 12 32895575 C T 29 98 BRCA TCGA-EW-A1J5 LRRK2 SNP Missense_Mutation 12 40681261 C G 32 56 BRCA TCGA-EW-A1J5 ZNF385A SNP Silent 12 54778269 G A 41 57 BRCA TCGA-EW-A1J5 OS9 SNP Splice_Site 12 58088532 G A 33 89 BRCA TCGA-EW-A1J5 VWF SNP Silent 12 6092323 G A 45 54 BRCA TCGA-EW-A1J5 NUP107 SNP Silent 12 69094517 G A 45 45 BRCA TCGA-EW-A1J5 ATN1 SNP Missense_Mutation 12 7046168 C G 29 68 BRCA TCGA-EW-A1J5 PLEKHG7 SNP Missense_Mutation 12 93149662 G C 33 55 BRCA TCGA-EW-A1J5 TPP2 SNP Silent 13 103299562 G A 33 57 BRCA TCGA-EW-A1J5 MCF2L SNP Missense_Mutation 13 113748898 G C 33 32 BRCA TCGA-EW-A1J5 TMCO3 SNP Missense_Mutation 13 114188406 C G 32 92 BRCA TCGA-EW-A1J5 ATP4B SNP Missense_Mutation 13 114309253 C G 30 67 BRCA TCGA-EW-A1J5 ATP4B SNP Missense_Mutation 13 114312444 C G 30 83 BRCA TCGA-EW-A1J5 NUPL1 SNP Missense_Mutation 13 25901082 G C 45 100 BRCA TCGA-EW-A1J5 RNF6 SNP Silent 13 26788189 C T 32 74 BRCA TCGA-EW-A1J5 PDS5B SNP Missense_Mutation 13 33281154 G A 33 100 BRCA TCGA-EW-A1J5 MAB21L1 SNP Missense_Mutation 13 36050059 C T 31 100 BRCA TCGA-EW-A1J5 CCDC169 SNP Splice_site 13 36805331 C G 29 54 BRCA TCGA-EW-A1J5 FAM48A SNP Missense_Mutation 13 37584769 C T 31 69 BRCA TCGA-EW-A1J5 RCBTB1 SNP Missense_Mutation 13 50108389 C G 32 99 BRCA TCGA-EW-A1J5 CDC42BPB SNP Silent 14 103466003 G A 45 60 BRCA TCGA-EW-A1J5 AHNAK2 SNP Silent 14 105406830 G C 45 44 BRCA TCGA-EW-A1J5 AHNAK2 SNP Missense_Mutation 14 105413693 G C 45 50 BRCA TCGA-EW-A1J5 MYH6 SNP Missense_Mutation 14 23858138 C T 30 98 BRCA TCGA-EW-A1J5 MYH6 SNP Silent 14 23867983 G C 45 53 BRCA TCGA-EW-A1J5 FOXA1 SNP Missense_Mutation 14 38061312 T C 58 85 BRCA TCGA-EW-A1J5 ATG14 SNP Missense_Mutation 14 55848870 C T 29 87 BRCA TCGA-EW-A1J5 KIAA0586 SNP Missense_Mutation 14 58895061 C G 29 64 BRCA TCGA-EW-A1J5 PPM1A SNP Missense_Mutation 14 60750229 G A 45 86 BRCA TCGA-EW-A1J5 SYNE2 SNP Missense_Mutation 14 64691728 G A 45 52 BRCA TCGA-EW-A1J5 SYNE2 SNP Splice_site 14 64692244 G C 33 57 BRCA TCGA-EW-A1J5 PCNX SNP Silent 14 71540426 C T 32 63 BRCA TCGA-EW-A1J5 SIPA1L1 SNP Silent 14 72139289 C A 29 56 BRCA TCGA-EW-A1J5 CCDC88C SNP Missense_Mutation 14 91757388 C T 30 100 BRCA TCGA-EW-A1J5 LRRK1 SNP Silent 15 101595248 C T 32 62 BRCA TCGA-EW-A1J5 GABRA5 SNP Missense_Mutation 15 27185157 G A 45 98 BRCA TCGA-EW-A1J5 HERC2 SNP Missense_Mutation 15 28369301 G C 41 100 BRCA TCGA-EW-A1J5 HERC2 SNP Missense_Mutation 15 28391398 C T 19 100 BRCA TCGA-EW-A1J5 APBA2 SNP Missense_Mutation 15 29346361 G A 45 93 BRCA TCGA-EW-A1J5 RYR3 SNP Silent 15 34014980 C T 31 46 BRCA TCGA-EW-A1J5 ZFYVE19 SNP Missense_Mutation 15 41105568 G A 45 83 BRCA TCGA-EW-A1J5 MGA SNP Missense_Mutation 15 42041852 C T 18 49 BRCA TCGA-EW-A1J5 UBR1 SNP Missense_Mutation 15 43281144 G C 45 52 BRCA TCGA-EW-A1J5 CATSPER2 SNP Missense_Mutation 15 43939258 C T 21 68 BRCA TCGA-EW-A1J5 DUOX2 SNP Silent 15 45389584 G A 45 55 BRCA TCGA-EW-A1J5 MYEF2 SNP Nonsense_Mutation 15 48443700 G A 45 96 BRCA TCGA-EW-A1J5 VPS13C SNP Missense_Mutation 15 62238536 C T 29 42 BRCA TCGA-EW-A1J5 HERC1 SNP Missense_Mutation 15 63947976 C G 32 85 BRCA TCGA-EW-A1J5 SCAPER SNP Missense_Mutation 15 77067266 G A 33 67 BRCA TCGA-EW-A1J5 C15orf26 SNP Missense_Mutation 15 81436030 C G 24 54 BRCA TCGA-EW-A1J5 ZC3H7A SNP Missense_Mutation 16 11861345 C T 32 100 BRCA TCGA-EW-A1J5 SHISA9 SNP Silent 16 13002435 C G 32 49 BRCA TCGA-EW-A1J5 NOMO1 SNP Nonsense_Mutation 16 14966096 C A 29 74 BRCA TCGA-EW-A1J5 SMG1 SNP Missense_Mutation 16 18903670 G A 37 80 BRCA TCGA-EW-A1J5 XPO6 SNP Silent 16 28112956 G A 41 50 BRCA TCGA-EW-A1J5 ITFG3 SNP Missense_Mutation 16 309544 C G 32 66 BRCA TCGA-EW-A1J5 ABCC12 SNP Missense_Mutation 16 48162479 G A 45 49 BRCA TCGA-EW-A1J5 FAM65A SNP Missense_Mutation 16 67578631 G A 41 100 BRCA TCGA-EW-A1J5 FAM65A SNP Missense_Mutation 16 67578880 G A 39 62 BRCA TCGA-EW-A1J5 CDH1 INS Frame_Shift_Ins 16 68849593 - G 64 67 BRCA TCGA-EW-A1J5 ADAMTS18 SNP Silent 16 77327078 C T 32 54 BRCA TCGA-EW-A1J5 NCOR1 SNP Silent 17 16062146 C T 32 60 BRCA TCGA-EW-A1J5 EPN2 SNP Nonsense_Mutation 17 19215401 C T 17 96 BRCA TCGA-EW-A1J5 TADA2A SNP Missense_Mutation 17 35827573 G A 37 98 BRCA TCGA-EW-A1J5 PIP4K2B SNP Silent 17 36955585 C T 32 74 BRCA TCGA-EW-A1J5 STARD3 SNP Missense_Mutation 17 37809924 C T 32 97 BRCA TCGA-EW-A1J5 GRB7 SNP Missense_Mutation 17 37898674 G C 33 73 BRCA TCGA-EW-A1J5 KRTAP9-2 SNP Missense_Mutation 17 39383235 C G 30 54 BRCA TCGA-EW-A1J5 KRT19 SNP Nonsense_Mutation 17 39684181 C A 31 60 BRCA TCGA-EW-A1J5 STAT5A SNP Missense_Mutation 17 40447795 G C 33 77 BRCA TCGA-EW-A1J5 GFAP SNP Silent 17 42988702 G A 43 44 BRCA TCGA-EW-A1J5 CAMTA2 SNP Missense_Mutation 17 4872102 C T 29 54 BRCA TCGA-EW-A1J5 OR4D2 SNP Missense_Mutation 17 56247698 C T 17 72 BRCA TCGA-EW-A1J5 ABCA8 SNP Missense_Mutation 17 66924181 C G 29 64 BRCA TCGA-EW-A1J5 RECQL5 SNP Missense_Mutation 17 73647280 G T 33 78 BRCA TCGA-EW-A1J5 FBF1 SNP Missense_Mutation 17 73910890 C T 31 73 BRCA TCGA-EW-A1J5 EVPL SNP Missense_Mutation 17 74013937 C T 29 81 BRCA TCGA-EW-A1J5 QRICH2 SNP Nonsense_Mutation 17 74277977 G A 39 59 BRCA TCGA-EW-A1J5 ENPP7 SNP Missense_Mutation 17 77710899 G A 45 92 BRCA TCGA-EW-A1J5 EIF4A3 SNP Missense_Mutation 17 78110058 G A 33 65 BRCA TCGA-EW-A1J5 B3GNTL1 SNP Silent 17 80915078 G A 33 57 BRCA TCGA-EW-A1J5 GREB1L SNP Missense_Mutation 18 19029635 G C 33 97 BRCA TCGA-EW-A1J5 RBBP8 SNP Missense_Mutation 18 20573141 G A 45 75 BRCA TCGA-EW-A1J5 ZNF397 SNP Missense_Mutation 18 32825765 G A 45 92 BRCA TCGA-EW-A1J5 FHOD3 SNP Silent 18 34326920 C G 29 97 BRCA TCGA-EW-A1J5 KIAA1468 SNP Silent 18 59895760 G A 41 45 BRCA TCGA-EW-A1J5 SERPINB11 SNP Missense_Mutation 18 61387387 G A 45 55 BRCA TCGA-EW-A1J5 MBP SNP Missense_Mutation 18 74696844 C T 31 76 BRCA TCGA-EW-A1J5 PTPRM SNP Silent 18 8244068 G A 33 69 BRCA TCGA-EW-A1J5 ICAM1 SNP Missense_Mutation 19 10394426 G C 45 41 BRCA TCGA-EW-A1J5 KEAP1 SNP Nonsense_Mutation 19 10600510 C A 29 68 BRCA TCGA-EW-A1J5 DOCK6 SNP Silent 19 11361688 C G 29 63 BRCA TCGA-EW-A1J5 ZNF20 SNP Silent 19 12243957 G A 45 54 BRCA TCGA-EW-A1J5 ZNF20 SNP Missense_Mutation 19 12244352 G C 47 79 BRCA TCGA-EW-A1J5 CIRBP SNP Missense_Mutation 19 1271007 C G 32 51 BRCA TCGA-EW-A1J5 MUM1 SNP Missense_Mutation 19 1367172 C T 32 87 BRCA TCGA-EW-A1J5 GAMT SNP Missense_Mutation 19 1398963 C A 22 90 BRCA TCGA-EW-A1J5 MED26 SNP Missense_Mutation 19 16687047 C G 18 61 BRCA TCGA-EW-A1J5 TIMM13 SNP Missense_Mutation 19 2426965 C A 23 65 BRCA TCGA-EW-A1J5 ZNF565 SNP Missense_Mutation 19 36685937 G A 45 61 BRCA TCGA-EW-A1J5 TJP3 SNP Silent 19 3747917 C T 17 63 BRCA TCGA-EW-A1J5 FCGBP SNP Missense_Mutation 19 40367774 C T 19 70 BRCA TCGA-EW-A1J5 FCGBP SNP Silent 19 40433879 C T 29 54 BRCA TCGA-EW-A1J5 RELB SNP Missense_Mutation 19 45528975 C T 30 91 BRCA TCGA-EW-A1J5 AP2A1 SNP Missense_Mutation 19 50303369 G A 45 95 BRCA TCGA-EW-A1J5 KLK14 SNP Missense_Mutation 19 51581409 G C 33 90 BRCA TCGA-EW-A1J5 ZNF836 SNP Silent 19 52660057 C G 30 63 BRCA TCGA-EW-A1J5 MBOAT7 SNP Silent 19 54677852 G A 41 46 BRCA TCGA-EW-A1J5 NLRP2 SNP Missense_Mutation 19 55502000 G C 45 60 BRCA TCGA-EW-A1J5 EPN1 SNP Missense_Mutation 19 56189070 C G 32 50 BRCA TCGA-EW-A1J5 ZNF329 SNP Silent 19 58639869 G A 45 54 BRCA TCGA-EW-A1J5 VAV1 SNP Missense_Mutation 19 6826674 C G 18 60 BRCA TCGA-EW-A1J5 MUC16 SNP Missense_Mutation 19 9057612 G A 45 64 BRCA TCGA-EW-A1J5 MUC16 SNP Missense_Mutation 19 9087590 C G 29 47 BRCA TCGA-EW-A1J5 MAP4K4 SNP Silent 2 102456320 G A 45 79 BRCA TCGA-EW-A1J5 MAP4K4 SNP Silent 2 102456440 G A 33 89 BRCA TCGA-EW-A1J5 RANBP2 SNP Missense_Mutation 2 109389434 G A 45 94 BRCA TCGA-EW-A1J5 NBAS SNP Nonsense_Mutation 2 15467970 G A 45 74 BRCA TCGA-EW-A1J5 TANC1 SNP Missense_Mutation 2 160035418 G C 45 100 BRCA TCGA-EW-A1J5 BAZ2B SNP Missense_Mutation 2 160176856 C T 29 74 BRCA TCGA-EW-A1J5 SCN7A SNP Missense_Mutation 2 167273255 C T 29 94 BRCA TCGA-EW-A1J5 TTN SNP Missense_Mutation 2 179426201 C T 29 89 BRCA TCGA-EW-A1J5 TTN SNP Nonsense_Mutation 2 179427679 G C 45 100 BRCA TCGA-EW-A1J5 PMS1 SNP Missense_Mutation 2 190660667 G A 48 65 BRCA TCGA-EW-A1J5 MFSD6 SNP Silent 2 191354510 C T 30 77 BRCA TCGA-EW-A1J5 HECW2 SNP Missense_Mutation 2 197183447 C T 32 67 BRCA TCGA-EW-A1J5 RFTN2 SNP Nonsense_Mutation 2 198498526 C A 29 82 BRCA TCGA-EW-A1J5 APOB SNP Missense_Mutation 2 21231201 C G 21 59 BRCA TCGA-EW-A1J5 TUBA4A SNP Missense_Mutation 2 220115948 G C 33 100 BRCA TCGA-EW-A1J5 DNPEP SNP Missense_Mutation 2 220247855 C G 32 98 BRCA TCGA-EW-A1J5 SAG SNP Silent 2 234237145 C T 30 82 BRCA TCGA-EW-A1J5 THAP4 SNP Silent 2 242572453 C T 29 49 BRCA TCGA-EW-A1J5 GPR113 SNP Silent 2 26538505 C T 29 76 BRCA TCGA-EW-A1J5 SLC5A6 SNP Silent 2 27430197 G A 33 60 BRCA TCGA-EW-A1J5 SNX17 SNP Silent 2 27599541 C T 30 55 BRCA TCGA-EW-A1J5 OXER1 SNP Missense_Mutation 2 42990854 C G 29 53 BRCA TCGA-EW-A1J5 CCDC88A SNP Missense_Mutation 2 55573390 C G 32 96 BRCA TCGA-EW-A1J5 USP34 SNP Missense_Mutation 2 61622053 C G 29 100 BRCA TCGA-EW-A1J5 AFTPH SNP Missense_Mutation 2 64780084 G C 33 62 BRCA TCGA-EW-A1J5 ASPRV1 SNP Missense_Mutation 2 70187836 C T 32 76 BRCA TCGA-EW-A1J5 ASPRV1 SNP Missense_Mutation 2 70188183 G A 33 66 BRCA TCGA-EW-A1J5 TIA1 SNP Missense_Mutation 2 70439953 C G 30 84 BRCA TCGA-EW-A1J5 POLR1A SNP Missense_Mutation 2 86272802 C T 29 82 BRCA TCGA-EW-A1J5 EIF2AK3 SNP Silent 2 88857341 G A 45 56 BRCA TCGA-EW-A1J5 XKR7 SNP Silent 20 30556266 C T 31 51 BRCA TCGA-EW-A1J5 DSN1 SNP Nonsense_Mutation 20 35381196 G A 45 54 BRCA TCGA-EW-A1J5 ARFGEF2 SNP Missense_Mutation 20 47621682 G A 45 100 BRCA TCGA-EW-A1J5 PTGIS SNP Silent 20 48164524 G A 41 51 BRCA TCGA-EW-A1J5 B4GALT5 SNP Missense_Mutation 20 48256231 C G 29 100 BRCA TCGA-EW-A1J5 ADNP SNP Missense_Mutation 20 49510991 G C 33 98 BRCA TCGA-EW-A1J5 SALL4 SNP Missense_Mutation 20 50407290 G C 45 78 BRCA TCGA-EW-A1J5 CTSZ SNP Missense_Mutation 20 57571764 G A 33 78 BRCA TCGA-EW-A1J5 SYCP2 SNP Silent 20 58460989 G A 45 55 BRCA TCGA-EW-A1J5 SYCP2 SNP Nonsense_Mutation 20 58470578 G A 45 52 BRCA TCGA-EW-A1J5 HAO1 SNP Missense_Mutation 20 7866374 G C 37 63 BRCA TCGA-EW-A1J5 DONSON SNP Silent 21 34951791 G C 45 58 BRCA TCGA-EW-A1J5 ICOSLG SNP Missense_Mutation 21 45656866 G A 41 76 BRCA TCGA-EW-A1J5 TSPEAR SNP Missense_Mutation 21 45929232 C T 22 60 BRCA TCGA-EW-A1J5 KRTAP10-9 SNP Missense_Mutation 21 46047160 G C 33 67 BRCA TCGA-EW-A1J5 COL6A2 SNP Silent 21 47552403 G A 33 61 BRCA TCGA-EW-A1J5 TOP3B SNP Missense_Mutation 22 22319685 C G 32 64 BRCA TCGA-EW-A1J5 RTDR1 SNP Silent 22 23401817 C A 29 56 BRCA TCGA-EW-A1J5 RASD2 SNP Missense_Mutation 22 35943080 C T 32 85 BRCA TCGA-EW-A1J5 MYH9 SNP Missense_Mutation 22 36708234 C T 31 97 BRCA TCGA-EW-A1J5 EIF3D SNP Missense_Mutation 22 36907562 C G 32 98 BRCA TCGA-EW-A1J5 DDX17 SNP Missense_Mutation 22 38882173 G C 45 64 BRCA TCGA-EW-A1J5 TNRC6B SNP Missense_Mutation 22 40662525 C G 32 85 BRCA TCGA-EW-A1J5 LDOC1L SNP Silent 22 44892894 G A 41 38 BRCA TCGA-EW-A1J5 GLA SNP Missense_Mutation 23 100655659 G C 45 50 BRCA TCGA-EW-A1J5 GPRASP2 SNP Missense_Mutation 23 101972129 C G 29 54 BRCA TCGA-EW-A1J5 MID1 SNP Silent 23 10442697 C T 32 72 BRCA TCGA-EW-A1J5 AMOT SNP Missense_Mutation 23 112058819 G C 45 80 BRCA TCGA-EW-A1J5 PLS3 SNP Silent 23 114868384 C T 29 58 BRCA TCGA-EW-A1J5 LAMP2 SNP Missense_Mutation 23 119589289 G A 33 59 BRCA TCGA-EW-A1J5 MAGEC3 SNP Missense_Mutation 23 140953296 C T 29 53 BRCA TCGA-EW-A1J5 SLITRK4 SNP Missense_Mutation 23 142716423 C G 29 64 BRCA TCGA-EW-A1J5 ATP2B3 SNP Missense_Mutation 23 152845591 G C 33 73 BRCA TCGA-EW-A1J5 LAGE3 SNP Missense_Mutation 23 153706294 C T 19 40 BRCA TCGA-EW-A1J5 GAB3 SNP Missense_Mutation 23 153924289 C T 31 67 BRCA TCGA-EW-A1J5 REPS2 SNP Missense_Mutation 23 17047736 C T 30 56 BRCA TCGA-EW-A1J5 MAGEB1 SNP Missense_Mutation 23 30269445 G A 45 68 BRCA TCGA-EW-A1J5 USP9X SNP Nonsense_Mutation 23 41056704 C T 29 98 BRCA TCGA-EW-A1J5 CXorf36 SNP Missense_Mutation 23 45013388 C T 32 74 BRCA TCGA-EW-A1J5 ZNF630 SNP Missense_Mutation 23 47918311 C T 32 60 BRCA TCGA-EW-A1J5 CACNA1F SNP Silent 23 49071937 C T 32 51 BRCA TCGA-EW-A1J5 NONO SNP Missense_Mutation 23 70517738 G A 33 97 BRCA TCGA-EW-A1J5 TAMM41 SNP Silent 3 11831994 C T 29 59 BRCA TCGA-EW-A1J5 UROC1 SNP Silent 3 126220075 G A 40 50 BRCA TCGA-EW-A1J5 PLXNA1 SNP Missense_Mutation 3 126751260 C G 29 61 BRCA TCGA-EW-A1J5 TF SNP Missense_Mutation 3 133473506 C G 32 51 BRCA TCGA-EW-A1J5 SRPRB SNP Missense_Mutation 3 133530017 C A 32 69 BRCA TCGA-EW-A1J5 CEP63 SNP Silent 3 134266255 G A 45 70 BRCA TCGA-EW-A1J5 LEKR1 SNP Missense_Mutation 3 156660380 G C 41 79 BRCA TCGA-EW-A1J5 PIK3CA SNP Missense_Mutation 3 178936091 G A 45 98 BRCA TCGA-EW-A1J5 PIK3CA SNP Missense_Mutation 3 178938934 G A 45 98 BRCA TCGA-EW-A1J5 MAP3K13 SNP Missense_Mutation 3 185198077 C G 32 64 BRCA TCGA-EW-A1J5 IL1RAP SNP Missense_Mutation 3 190366258 C T 31 65 BRCA TCGA-EW-A1J5 ATP13A5 SNP Silent 3 193032846 G A 45 47 BRCA TCGA-EW-A1J5 EFHB SNP Missense_Mutation 3 19924193 C T 31 84 BRCA TCGA-EW-A1J5 STT3B SNP Missense_Mutation 3 31661244 G A 45 100 BRCA TCGA-EW-A1J5 CTDSPL SNP Missense_Mutation 3 37988634 G C 41 97 BRCA TCGA-EW-A1J5 ULK4 SNP Missense_Mutation 3 41938469 G C 45 60 BRCA TCGA-EW-A1J5 SETD2 SNP Missense_Mutation 3 47158173 C G 32 100 BRCA TCGA-EW-A1J5 MAP4 SNP Silent 3 47957724 G A 45 57 BRCA TCGA-EW-A1J5 CELSR3 SNP Silent 3 48694738 G A 45 69 BRCA TCGA-EW-A1J5 GRM2 SNP Missense_Mutation 3 51747097 C G 30 54 BRCA TCGA-EW-A1J5 FRMD4B SNP Missense_Mutation 3 69230351 C G 32 54 BRCA TCGA-EW-A1J5 GXYLT2 SNP Silent 3 73004303 C T 32 72 BRCA TCGA-EW-A1J5 ROBO2 SNP Missense_Mutation 3 77617518 G C 41 87 BRCA TCGA-EW-A1J5 ROBO1 SNP Missense_Mutation 3 79639053 C G 30 80 BRCA TCGA-EW-A1J5 COL25A1 SNP Missense_Mutation 4 110222887 G C 33 65 BRCA TCGA-EW-A1J5 NDST3 SNP Missense_Mutation 4 118975584 G C 33 60 BRCA TCGA-EW-A1J5 FAT4 SNP Missense_Mutation 4 126369700 C T 32 88 BRCA TCGA-EW-A1J5 FAT1 SNP Missense_Mutation 4 187628122 G A 41 83 BRCA TCGA-EW-A1J5 STIM2 SNP Silent 4 27009196 G T 45 49 BRCA TCGA-EW-A1J5 PGM2 SNP Missense_Mutation 4 37841763 G C 33 89 BRCA TCGA-EW-A1J5 GRXCR1 SNP Silent 4 42895457 C T 23 52 BRCA TCGA-EW-A1J5 TXK SNP Missense_Mutation 4 48076019 G C 45 64 BRCA TCGA-EW-A1J5 CRMP1 SNP Missense_Mutation 4 5830269 G A 41 81 BRCA TCGA-EW-A1J5 LPHN3 SNP Silent 4 62897274 C T 29 87 BRCA TCGA-EW-A1J5 RUFY3 SNP Missense_Mutation 4 71654529 G A 45 100 BRCA TCGA-EW-A1J5 LIN54 SNP Missense_Mutation 4 83905683 C G 32 77 BRCA TCGA-EW-A1J5 HERC6 SNP Nonsense_Mutation 4 89334350 G A 47 50 BRCA TCGA-EW-A1J5 WDR36 SNP Missense_Mutation 5 110454814 C G 32 53 BRCA TCGA-EW-A1J5 CAMK4 SNP Missense_Mutation 5 110712636 G C 45 89 BRCA TCGA-EW-A1J5 CAMK4 SNP Nonsense_Mutation 5 110814119 C T 29 99 BRCA TCGA-EW-A1J5 EPB41L4A SNP Missense_Mutation 5 111531377 C G 32 74 BRCA TCGA-EW-A1J5 FNIP1 SNP Missense_Mutation 5 130846097 C T 32 100 BRCA TCGA-EW-A1J5 DDX46 SNP Missense_Mutation 5 134164380 G A 33 98 BRCA TCGA-EW-A1J5 FAM13B SNP Missense_Mutation 5 137289107 C G 32 72 BRCA TCGA-EW-A1J5 TMCO6 SNP Silent 5 140022222 C T 32 56 BRCA TCGA-EW-A1J5 HARS SNP Missense_Mutation 5 140070834 C T 31 77 BRCA TCGA-EW-A1J5 PCDHGA2 SNP Missense_Mutation 5 140718650 G C 33 99 BRCA TCGA-EW-A1J5 PCDHGB7 SNP Missense_Mutation 5 140798462 G A 33 70 BRCA TCGA-EW-A1J5 FAM105A SNP Silent 5 14601228 G A 45 53 BRCA TCGA-EW-A1J5 EBF1 SNP Missense_Mutation 5 158139314 G A 45 98 BRCA TCGA-EW-A1J5 ODZ2 SNP Missense_Mutation 5 167671524 G A 45 98 BRCA TCGA-EW-A1J5 PANK3 SNP Silent 5 167984582 G A 45 69 BRCA TCGA-EW-A1J5 MGAT4B SNP Nonsense_Mutation 5 179225428 G A 45 75 BRCA TCGA-EW-A1J5 BTNL9 SNP Missense_Mutation 5 180477193 G C 33 45 BRCA TCGA-EW-A1J5 RAI14 SNP Missense_Mutation 5 34813753 C G 29 78 BRCA TCGA-EW-A1J5 PIK3R1 SNP Missense_Mutation 5 67590481 G A 45 100 BRCA TCGA-EW-A1J5 DMGDH SNP Nonsense_Mutation 5 78350099 G A 45 100 BRCA TCGA-EW-A1J5 XRCC4 SNP Silent 5 82491606 C T 29 53 BRCA TCGA-EW-A1J5 AIM1 SNP Missense_Mutation 6 106967799 G C 33 67 BRCA TCGA-EW-A1J5 WASF1 SNP Missense_Mutation 6 110424677 C G 32 96 BRCA TCGA-EW-A1J5 WASF1 SNP Missense_Mutation 6 110434547 C T 29 98 BRCA TCGA-EW-A1J5 CCDC90A SNP Silent 6 13801535 G A 45 53 BRCA TCGA-EW-A1J5 ZBTB2 SNP Missense_Mutation 6 151694745 G C 33 100 BRCA TCGA-EW-A1J5 RBM24 SNP Missense_Mutation 6 17292010 C T 23 100 BRCA TCGA-EW-A1J5 HIST1H2BB SNP Nonsense_Mutation 6 26043570 C A 30 98 BRCA TCGA-EW-A1J5 BTN3A2 SNP Silent 6 26368441 C T 32 52 BRCA TCGA-EW-A1J5 GABBR1 SNP Missense_Mutation 6 29589569 C T 30 93 BRCA TCGA-EW-A1J5 SLC44A4 SNP Missense_Mutation 6 31833105 G C 38 53 BRCA TCGA-EW-A1J5 TEAD3 SNP Silent 6 35446093 G A 46 66 BRCA TCGA-EW-A1J5 TEAD3 SNP Silent 6 35446243 G A 33 72 BRCA TCGA-EW-A1J5 FGD2 SNP Missense_Mutation 6 36995215 C T 29 54 BRCA TCGA-EW-A1J5 MEP1A SNP Silent 6 46766377 C G 32 48 BRCA TCGA-EW-A1J5 GPR116 SNP Missense_Mutation 6 46828604 C T 29 53 BRCA TCGA-EW-A1J5 MUT SNP Missense_Mutation 6 49399509 G A 41 92 BRCA TCGA-EW-A1J5 LY86 SNP Missense_Mutation 6 6654780 G A 33 53 BRCA TCGA-EW-A1J5 LMBRD1 SNP Missense_Mutation 6 70462186 C T 29 94 BRCA TCGA-EW-A1J5 LRRN3 SNP Missense_Mutation 7 110763804 C G 29 100 BRCA TCGA-EW-A1J5 MET SNP Missense_Mutation 7 116371761 G A 45 85 BRCA TCGA-EW-A1J5 CFTR SNP Missense_Mutation 7 117227866 G C 37 75 BRCA TCGA-EW-A1J5 CFTR SNP Silent 7 117251828 C G 29 72 BRCA TCGA-EW-A1J5 RNF133 SNP Silent 7 122338358 G A 45 66 BRCA TCGA-EW-A1J5 LRRC4 SNP Silent 7 127670274 G A 38 50 BRCA TCGA-EW-A1J5 CNTNAP2 SNP Missense_Mutation 7 148080896 G A 41 100 BRCA TCGA-EW-A1J5 GIMAP7 SNP Silent 7 150217320 C T 32 46 BRCA TCGA-EW-A1J5 MLL3 SNP Missense_Mutation 7 152027786 C G 32 73 BRCA TCGA-EW-A1J5 DNAH11 SNP Missense_Mutation 7 21784183 G A 33 57 BRCA TCGA-EW-A1J5 FTSJ2 SNP Silent 7 2274964 G T 45 58 BRCA TCGA-EW-A1J5 KLHL7 SNP Silent 7 23180527 C A 29 55 BRCA TCGA-EW-A1J5 POU6F2 SNP Missense_Mutation 7 39446249 G A 45 100 BRCA TCGA-EW-A1J5 YAE1D1 SNP Missense_Mutation 7 39612069 G C 45 53 BRCA TCGA-EW-A1J5 OGDH SNP Missense_Mutation 7 44734059 G A 45 100 BRCA TCGA-EW-A1J5 CLIP2 SNP Missense_Mutation 7 73771716 G A 37 96 BRCA TCGA-EW-A1J5 MAGI2 SNP Silent 7 79082424 C T 32 74 BRCA TCGA-EW-A1J5 PCLO SNP Missense_Mutation 7 82467571 C T 29 100 BRCA TCGA-EW-A1J5 SEMA3A SNP Missense_Mutation 7 83675694 G A 33 76 BRCA TCGA-EW-A1J5 ZNF804B SNP Missense_Mutation 7 88965217 G A 33 52 BRCA TCGA-EW-A1J5 SAMD9L SNP Missense_Mutation 7 92764738 G C 33 56 BRCA TCGA-EW-A1J5 CCDC132 SNP Nonsense_Mutation 7 92979256 G T 45 100 BRCA TCGA-EW-A1J5 SPDYE3 SNP Nonsense_Mutation 7 99905564 C G 29 53 BRCA TCGA-EW-A1J5 FBXO32 SNP Missense_Mutation 8 124544170 G C 33 58 BRCA TCGA-EW-A1J5 GRINA SNP Silent 8 145066883 G A 46 55 BRCA TCGA-EW-A1J5 CPSF1 SNP Splice_site 8 145621563 C T 24 91 BRCA TCGA-EW-A1J5 GPT SNP Missense_Mutation 8 145730399 C G 30 76 BRCA TCGA-EW-A1J5 ZNF34 SNP Missense_Mutation 8 145999258 C G 30 91 BRCA TCGA-EW-A1J5 CLU SNP Nonsense_Mutation 8 27457503 G A 47 78 BRCA TCGA-EW-A1J5 UNC5D SNP Missense_Mutation 8 35606082 G A 45 99 BRCA TCGA-EW-A1J5 CHRNA6 SNP Missense_Mutation 8 42620327 C T 29 100 BRCA TCGA-EW-A1J5 PRKDC SNP Silent 8 48811083 G A 45 59 BRCA TCGA-EW-A1J5 MOS SNP Missense_Mutation 8 57026109 C G 19 47 BRCA TCGA-EW-A1J5 PENK SNP Silent 8 57354326 G A 45 74 BRCA TCGA-EW-A1J5 CYP7B1 SNP Nonsense_Mutation 8 65527649 G A 45 74 BRCA TCGA-EW-A1J5 PREX2 SNP Missense_Mutation 8 69020348 C G 32 100 BRCA TCGA-EW-A1J5 ZFHX4 SNP Missense_Mutation 8 77768387 C T 19 75 BRCA TCGA-EW-A1J5 ABCA1 SNP Silent 9 107562237 G A 45 60 BRCA TCGA-EW-A1J5 ZNF462 SNP Missense_Mutation 9 109689443 G C 45 75 BRCA TCGA-EW-A1J5 PAPPA SNP Silent 9 118950076 G A 46 48 BRCA TCGA-EW-A1J5 ASTN2 SNP Missense_Mutation 9 119625984 C G 29 100 BRCA TCGA-EW-A1J5 TLR4 SNP Missense_Mutation 9 120476354 C A 32 48 BRCA TCGA-EW-A1J5 CNTRL SNP Silent 9 123904482 C G 30 52 BRCA TCGA-EW-A1J5 CNTRL SNP Missense_Mutation 9 123914776 C G 32 72 BRCA TCGA-EW-A1J5 CNTRL SNP Missense_Mutation 9 123919814 G A 45 71 BRCA TCGA-EW-A1J5 DNM1 SNP Missense_Mutation 9 130986618 G C 41 100 BRCA TCGA-EW-A1J5 SETX SNP Missense_Mutation 9 135205472 C G 29 81 BRCA TCGA-EW-A1J5 CNTNAP3B SNP Missense_Mutation 9 43876087 G A 33 52 BRCA TCGA-EW-A1J5 GDA SNP Missense_Mutation 9 74817626 G A 37 72 BRCA TCGA-EW-A1J5 NFIL3 SNP Missense_Mutation 9 94172741 C G 32 60 BRCA TCGA-EW-A1J5 FAM120A SNP Missense_Mutation 9 96238576 C T 29 100 BRCA TCGA-EW-A1J5 FAM120A SNP Missense_Mutation 9 96261150 C T 29 88 BRCA TCGA-EW-A1J5 FAM22F SNP Missense_Mutation 9 97080967 C G 32 48 BRCA TCGA-EW-A1J6 FLG SNP Missense_Mutation 1 152284604 C A 25 42 BRCA TCGA-EW-A1J6 TNR SNP Silent 1 175372511 G A 40 57 BRCA TCGA-EW-A1J6 CUBN SNP Missense_Mutation 10 16942845 G A 48 70 BRCA TCGA-EW-A1J6 SLC16A9 SNP Silent 10 61412689 G A 43 51 BRCA TCGA-EW-A1J6 ATM SNP Missense_Mutation 11 108218045 A G 4 88 BRCA TCGA-EW-A1J6 MUC5B SNP Silent 11 1265475 G A 40 8 BRCA TCGA-EW-A1J6 ADAMTS8 SNP Silent 11 130286095 G A 38 41 BRCA TCGA-EW-A1J6 QSER1 INS Frame_Shift_Ins 11 32955077 - A 29 73 BRCA TCGA-EW-A1J6 ODZ4 SNP Silent 11 78440581 C T 31 56 BRCA TCGA-EW-A1J6 PLBD2 SNP Missense_Mutation 12 113825554 A G 4 91 BRCA TCGA-EW-A1J6 UBAC2 SNP Missense_Mutation 13 100020110 G A 39 66 BRCA TCGA-EW-A1J6 NALCN SNP Missense_Mutation 13 101936304 G C 40 71 BRCA TCGA-EW-A1J6 ITGBL1 SNP Missense_Mutation 13 102344973 G A 35 92 BRCA TCGA-EW-A1J6 SSH2 SNP Silent 17 28022486 G A 48 82 BRCA TCGA-EW-A1J6 KRT34 SNP Missense_Mutation 17 39535625 G T 34 93 BRCA TCGA-EW-A1J6 CD79B SNP Silent 17 62007651 G A 39 42 BRCA TCGA-EW-A1J6 TTC39C SNP Splice_site 18 21698089 G A 44 98 BRCA TCGA-EW-A1J6 DCC SNP Missense_Mutation 18 50450083 G C 41 89 BRCA TCGA-EW-A1J6 COL5A3 SNP Splice_site 19 10087234 C T 23 48 BRCA TCGA-EW-A1J6 ILF3 SNP Missense_Mutation 19 10798193 C G 30 65 BRCA TCGA-EW-A1J6 SERPINE2 DEL In_Frame_Del 2 224863029 TTG - 56 67 BRCA TCGA-EW-A1J6 HEATR5B SNP Splice_site 2 37234446 A C 6 39 BRCA TCGA-EW-A1J6 LRRTM1 SNP Nonsense_Mutation 2 80530639 G T 34 75 BRCA TCGA-EW-A1J6 ENTPD6 SNP Missense_Mutation 20 25205861 C G 17 59 BRCA TCGA-EW-A1J6 RNF215 DEL Frame_Shift_Del 22 30775717 CA - 25 91 BRCA TCGA-EW-A1J6 TTC38 SNP Missense_Mutation 22 46685729 G A 40 53 BRCA TCGA-EW-A1J6 SLC9C1 SNP Missense_Mutation 3 111996653 G T 46 48 BRCA TCGA-EW-A1J6 COL6A5 SNP Missense_Mutation 3 130202881 G C 47 53 BRCA TCGA-EW-A1J6 MAML3 SNP Silent 4 140811075 C T 28 45 BRCA TCGA-EW-A1J6 DPYSL3 SNP Silent 5 146777319 G T 46 61 BRCA TCGA-EW-A1J6 KIAA0947 SNP Silent 5 5457497 G T 38 42 BRCA TCGA-EW-A1J6 SEMA5A SNP Silent 5 9108318 G A 38 32 BRCA TCGA-EW-A1J6 MYO6 SNP Missense_Mutation 6 76540247 C T 29 99 BRCA TCGA-EW-A1J6 PLXNA4 SNP Missense_Mutation 7 131848966 C T 22 85 BRCA TCGA-EW-A1J6 WBSCR28 SNP Missense_Mutation 7 73279928 G T 44 51 BRCA TCGA-EW-A1J6 PPP1R9A SNP Missense_Mutation 7 94540068 C A 30 74 BRCA TCGA-EW-A1J6 FAM86B2 SNP Silent 8 12283440 A G 8 39 BRCA TCGA-EW-A1J6 RB1CC1 SNP Missense_Mutation 8 53569852 T C 60 58 BRCA TCGA-EW-A1J6 HSDL2 SNP Nonsense_Mutation 9 115200812 A T 1 67 BRCA TCGA-EW-A1J6 SNX30 SNP Silent 9 115567232 T C 49 51 BRCA TCGA-EW-A1J6 PIGO SNP Silent 9 35095509 G A 40 48 BRCA TCGA-EW-A1J6 ZBTB5 SNP Missense_Mutation 9 37441075 G C 46 69 BRCA TCGA-EW-A1OV FLG SNP Missense_Mutation 1 152280830 C T 29 52 BRCA TCGA-EW-A1OV CCT3 SNP Missense_Mutation 1 156280435 C T 29 78 BRCA TCGA-EW-A1OV OR6Y1 SNP Missense_Mutation 1 158517323 G C 40 40 BRCA TCGA-EW-A1OV MST1P9 SNP Silent 1 17083838 C A 29 52 BRCA TCGA-EW-A1OV IL19 SNP Nonsense_Mutation 1 206972245 C A 25 29 BRCA TCGA-EW-A1OV INTS7 SNP Silent 1 212141942 C T 29 44 BRCA TCGA-EW-A1OV ZBTB40 SNP Nonsense_Mutation 1 22828833 G T 33 72 BRCA TCGA-EW-A1OV URB2 SNP Missense_Mutation 1 229773010 A C 16 57 BRCA TCGA-EW-A1OV FGR SNP Missense_Mutation 1 27939763 C T 29 95 BRCA TCGA-EW-A1OV EPS15 SNP Missense_Mutation 1 51874002 G C 33 47 BRCA TCGA-EW-A1OV SGIP1 SNP Missense_Mutation 1 67138977 G A 33 84 BRCA TCGA-EW-A1OV TYW3 SNP Missense_Mutation 1 75229688 C T 21 51 BRCA TCGA-EW-A1OV INPP5A SNP Missense_Mutation 10 134523866 C T 32 92 BRCA TCGA-EW-A1OV CUBN SNP Missense_Mutation 10 17142117 G C 41 58 BRCA TCGA-EW-A1OV ARMC4 SNP Missense_Mutation 10 28250550 C A 25 77 BRCA TCGA-EW-A1OV SUPV3L1 SNP Missense_Mutation 10 70960164 C T 29 71 BRCA TCGA-EW-A1OV GUCY1A2 SNP Missense_Mutation 11 106681104 C T 31 96 BRCA TCGA-EW-A1OV ZNF259 SNP Missense_Mutation 11 116657763 C T 32 83 BRCA TCGA-EW-A1OV GPR137 SNP Missense_Mutation 11 64054186 G C 42 63 BRCA TCGA-EW-A1OV FAT3 SNP Missense_Mutation 11 92592421 G A 40 96 BRCA TCGA-EW-A1OV AMOTL1 SNP Missense_Mutation 11 94603937 G C 33 90 BRCA TCGA-EW-A1OV WSCD2 SNP Missense_Mutation 12 108620851 G A 45 95 BRCA TCGA-EW-A1OV NOS1 SNP Missense_Mutation 12 117696209 C G 32 94 BRCA TCGA-EW-A1OV FAR2 SNP Silent 12 29474809 G A 40 21 BRCA TCGA-EW-A1OV IPO8 SNP Missense_Mutation 12 30816522 C T 19 76 BRCA TCGA-EW-A1OV PDZRN4 SNP Missense_Mutation 12 41966376 G A 45 85 BRCA TCGA-EW-A1OV FAM186A SNP Missense_Mutation 12 50749200 G C 33 51 BRCA TCGA-EW-A1OV OR6C6 SNP Silent 12 55688858 G C 45 47 BRCA TCGA-EW-A1OV HEATR4 SNP Silent 14 73945314 G C 33 49 BRCA TCGA-EW-A1OV EML5 SNP Silent 14 89153606 G T 45 72 BRCA TCGA-EW-A1OV IGDCC3 SNP Nonsense_Mutation 15 65627716 G A 37 70 BRCA TCGA-EW-A1OV AAGAB SNP Missense_Mutation 15 67496430 C G 32 79 BRCA TCGA-EW-A1OV SMG1 SNP Nonsense_Mutation 16 18865076 G A 47 74 BRCA TCGA-EW-A1OV CEMP1 SNP Silent 16 2580796 C T 29 49 BRCA TCGA-EW-A1OV SRL SNP Nonsense_Mutation 16 4247812 G A 45 86 BRCA TCGA-EW-A1OV ZNF500 SNP Missense_Mutation 16 4812753 G A 45 47 BRCA TCGA-EW-A1OV ELMO3 SNP Splice_Site 16 67235311 G A 33 78 BRCA TCGA-EW-A1OV TSNAXIP1 SNP Nonsense_Mutation 16 67861265 C G 29 50 BRCA TCGA-EW-A1OV NT5M SNP Silent 17 17248215 C T 17 59 BRCA TCGA-EW-A1OV MED1 SNP Missense_Mutation 17 37590562 A G 1 87 BRCA TCGA-EW-A1OV XAF1 SNP Missense_Mutation 17 6676441 C T 23 38 BRCA TCGA-EW-A1OV COL5A3 SNP Missense_Mutation 19 10106254 G C 39 54 BRCA TCGA-EW-A1OV CPT1C SNP Missense_Mutation 19 50216736 C G 30 55 BRCA TCGA-EW-A1OV ZNF534 SNP Missense_Mutation 19 52942307 C A 23 52 BRCA TCGA-EW-A1OV GPR108 SNP Silent 19 6731093 G A 33 73 BRCA TCGA-EW-A1OV RANBP2 SNP Missense_Mutation 2 109380048 C G 32 67 BRCA TCGA-EW-A1OV ZAK SNP Silent 2 174130809 G A 41 47 BRCA TCGA-EW-A1OV TTN SNP Missense_Mutation 2 179495587 C T 29 100 BRCA TCGA-EW-A1OV CXCR2 SNP Silent 2 219000457 C T 22 56 BRCA TCGA-EW-A1OV FAM59B SNP Nonsense_Mutation 2 26410420 C G 29 73 BRCA TCGA-EW-A1OV ANKRD36C SNP Missense_Mutation 2 96542220 C G 32 50 BRCA TCGA-EW-A1OV CECR2 SNP Missense_Mutation 22 17983944 G A 44 72 BRCA TCGA-EW-A1OV PIWIL3 SNP Nonsense_Mutation 22 25147426 C T 30 74 BRCA TCGA-EW-A1OV DNAJB7 SNP Missense_Mutation 22 41257383 C T 29 57 BRCA TCGA-EW-A1OV FANCB SNP Missense_Mutation 23 14861741 G A 34 59 BRCA TCGA-EW-A1OV CXorf40A SNP Silent 23 148628334 C G 23 26 BRCA TCGA-EW-A1OV MAGEA4 SNP Silent 23 151092751 C T 31 41 BRCA TCGA-EW-A1OV RAB39B SNP Missense_Mutation 23 154493495 G A 39 69 BRCA TCGA-EW-A1OV OGT SNP Missense_Mutation 23 70776923 G A 33 99 BRCA TCGA-EW-A1OV KIAA2022 SNP Missense_Mutation 23 73962009 C T 29 74 BRCA TCGA-EW-A1OV KIAA2022 SNP Silent 23 73964065 C T 29 61 BRCA TCGA-EW-A1OV MORC1 SNP Missense_Mutation 3 108724021 C G 32 56 BRCA TCGA-EW-A1OV C3orf52 SNP Missense_Mutation 3 111835691 C T 29 52 BRCA TCGA-EW-A1OV PDIA5 SNP Missense_Mutation 3 122835135 G A 37 65 BRCA TCGA-EW-A1OV TIPARP SNP Missense_Mutation 3 156395730 G A 45 68 BRCA TCGA-EW-A1OV FNDC3B SNP Silent 3 172070865 C A 21 52 BRCA TCGA-EW-A1OV PIK3CA SNP Missense_Mutation 3 178916854 G A 33 97 BRCA TCGA-EW-A1OV EPHB3 SNP Missense_Mutation 3 184298586 G A 45 95 BRCA TCGA-EW-A1OV ARPP21 SNP Nonsense_Mutation 3 35724361 C T 29 79 BRCA TCGA-EW-A1OV CYB561D2 SNP Missense_Mutation 3 50391063 C T 32 70 BRCA TCGA-EW-A1OV CCDC111 SNP Silent 4 185612860 C T 29 59 BRCA TCGA-EW-A1OV PHOX2B SNP Silent 4 41748265 C T 32 53 BRCA TCGA-EW-A1OV CENPC1 SNP Nonsense_Mutation 4 68355813 G A 45 52 BRCA TCGA-EW-A1OV CTNNA1 SNP Nonsense_Mutation 5 138145810 C T 31 64 BRCA TCGA-EW-A1OV PCDHB11 SNP Silent 5 140579848 A G 13 44 BRCA TCGA-EW-A1OV EPB41L2 SNP Silent 6 131247796 G C 33 52 BRCA TCGA-EW-A1OV REPS1 SNP Missense_Mutation 6 139241412 C T 29 93 BRCA TCGA-EW-A1OV FRMD1 SNP Missense_Mutation 6 168462627 G A 43 73 BRCA TCGA-EW-A1OV HIST1H2BC SNP Missense_Mutation 6 26124000 C G 18 100 BRCA TCGA-EW-A1OV CD109 SNP Missense_Mutation 6 74528116 C T 31 49 BRCA TCGA-EW-A1OV MUC12 SNP Nonsense_Mutation 7 100648336 C G 29 61 BRCA TCGA-EW-A1OV CYP2W1 SNP Missense_Mutation 7 1024666 C T 23 52 BRCA TCGA-EW-A1OV SDK1 SNP Missense_Mutation 7 4277291 C T 26 75 BRCA TCGA-EW-A1OV SLC29A4 SNP Silent 7 5338962 C T 30 54 BRCA TCGA-EW-A1OV WBSCR28 SNP Missense_Mutation 7 73280136 C T 29 42 BRCA TCGA-EW-A1OV PKHD1L1 SNP Splice_Site 8 110447418 G C 33 79 BRCA TCGA-EW-A1OV SYBU SNP Missense_Mutation 8 110598367 G A 37 90 BRCA TCGA-EW-A1OV TRAPPC9 SNP Missense_Mutation 8 141415792 G A 35 85 BRCA TCGA-EW-A1OV ZNF251 SNP Silent 8 145947971 G A 45 55 BRCA TCGA-EW-A1OV RC3H2 SNP Missense_Mutation 9 125621108 C T 31 93 BRCA TCGA-EW-A1OV VPS13A SNP Silent 9 79792653 G A 45 79 BRCA TCGA-EW-A1OV PTPDC1 SNP Missense_Mutation 9 96870160 A T 1 64 BRCA TCGA-EW-A1OX NBPF10 SNP Missense_Mutation 1 145311128 G T 35 47 BRCA TCGA-EW-A1OX ARID4B SNP Missense_Mutation 1 235336038 G C 33 84 BRCA TCGA-EW-A1OX ARID1A INS Frame_Shift_Ins 1 27107135 - A 29 84 BRCA TCGA-EW-A1OX DLG5 SNP Silent 10 79567580 G A 42 51 BRCA TCGA-EW-A1OX GATA3 INS Splice_site 10 8115985 - C 15 65 BRCA TCGA-EW-A1OX MUC5B SNP Missense_Mutation 11 1266710 T A 59 46 BRCA TCGA-EW-A1OX SENP1 SNP Silent 12 48468348 T A 59 53 BRCA TCGA-EW-A1OX LUM SNP Missense_Mutation 12 91502360 C G 22 73 BRCA TCGA-EW-A1OX MYH1 SNP Silent 17 10406521 T A 61 50 BRCA TCGA-EW-A1OX KCNH6 SNP Silent 17 61611456 T C 49 67 BRCA TCGA-EW-A1OX TPM4 SNP Missense_Mutation 19 16186899 A C 10 64 BRCA TCGA-EW-A1OX PTPRH SNP Missense_Mutation 19 55699505 C T 27 57 BRCA TCGA-EW-A1OX SCN1A SNP Missense_Mutation 2 166850700 C G 30 100 BRCA TCGA-EW-A1OX KIAA1211L SNP Silent 2 99448832 C T 21 42 BRCA TCGA-EW-A1OX SIM2 SNP Nonsense_Mutation 21 38095375 C T 31 67 BRCA TCGA-EW-A1OX PIH1D3 SNP Silent 23 106456141 G A 33 42 BRCA TCGA-EW-A1OX TIGIT SNP Silent 3 114012875 A T 6 53 BRCA TCGA-EW-A1OX SNX18 INS Frame_Shift_Ins 5 53815627 - A 37 50 BRCA TCGA-EW-A1OX NXPH1 SNP Missense_Mutation 7 8791227 C T 29 100 BRCA TCGA-EW-A1OX ANKRD18B SNP Missense_Mutation 9 33536929 G A 37 51 BRCA TCGA-EW-A1OY ATAD3A SNP Missense_Mutation 1 1460657 C T 31 61 BRCA TCGA-EW-A1OY URB2 SNP Missense_Mutation 1 229773865 G A 38 55 BRCA TCGA-EW-A1OY OR2C3 SNP Missense_Mutation 1 247695329 G A 40 60 BRCA TCGA-EW-A1OY CDCA8 SNP Missense_Mutation 1 38171237 G A 33 63 BRCA TCGA-EW-A1OY ATG4C SNP Missense_Mutation 1 63282323 C T 31 100 BRCA TCGA-EW-A1OY PCGF6 SNP Missense_Mutation 10 105073972 G C 39 66 BRCA TCGA-EW-A1OY DMBT1 SNP Silent 10 124345880 C T 19 50 BRCA TCGA-EW-A1OY PALD1 SNP Silent 10 72292478 C T 19 46 BRCA TCGA-EW-A1OY LARP4B SNP Missense_Mutation 10 871204 G C 44 58 BRCA TCGA-EW-A1OY OR5AR1 SNP Missense_Mutation 11 56431496 G A 46 52 BRCA TCGA-EW-A1OY OR9G1 SNP Missense_Mutation 11 56468576 C T 30 64 BRCA TCGA-EW-A1OY SRRM4 SNP Missense_Mutation 12 119419761 C A 18 73 BRCA TCGA-EW-A1OY RIMBP2 SNP Missense_Mutation 12 130927144 G T 48 64 BRCA TCGA-EW-A1OY TFCP2 SNP Missense_Mutation 12 51501053 T A 49 77 BRCA TCGA-EW-A1OY TRPC4 SNP Missense_Mutation 13 38248466 C T 23 100 BRCA TCGA-EW-A1OY CYP46A1 SNP Missense_Mutation 14 100173036 G A 41 61 BRCA TCGA-EW-A1OY RYR3 SNP Silent 15 33954438 C T 27 46 BRCA TCGA-EW-A1OY FAM82A2 SNP Silent 15 41028781 G A 41 60 BRCA TCGA-EW-A1OY PEAK1 SNP Missense_Mutation 15 77406832 C T 23 59 BRCA TCGA-EW-A1OY EFTUD1 SNP Missense_Mutation 15 82450087 T C 59 93 BRCA TCGA-EW-A1OY BCKDK SNP Missense_Mutation 16 31121737 C T 23 79 BRCA TCGA-EW-A1OY MYH1 SNP Silent 17 10416983 G A 37 53 BRCA TCGA-EW-A1OY RAB37 SNP Splice_Site 17 72736906 G T 35 96 BRCA TCGA-EW-A1OY TP53 SNP Nonsense_Mutation 17 7578275 G A 45 63 BRCA TCGA-EW-A1OY DNAH2 SNP Missense_Mutation 17 7640395 G A 40 47 BRCA TCGA-EW-A1OY DSG2 SNP Missense_Mutation 18 29100768 A G 14 51 BRCA TCGA-EW-A1OY FCGBP SNP Silent 19 40368619 G A 38 40 BRCA TCGA-EW-A1OY HAS1 SNP Missense_Mutation 19 52217080 G A 38 88 BRCA TCGA-EW-A1OY CHRNA1 SNP Silent 2 175618974 G A 40 46 BRCA TCGA-EW-A1OY DNAH7 SNP Nonsense_Mutation 2 196729475 C A 32 99 BRCA TCGA-EW-A1OY PASK SNP Missense_Mutation 2 242063401 G C 33 77 BRCA TCGA-EW-A1OY PYGB SNP Missense_Mutation 20 25252038 G A 47 95 BRCA TCGA-EW-A1OY DLGAP4 SNP Missense_Mutation 20 35060467 G A 40 73 BRCA TCGA-EW-A1OY PI4KA SNP Splice_site 22 21096642 A T 4 50 BRCA TCGA-EW-A1OY PI4KA DNP Missense_Mutation 22 21096935 CC AA 26 75 BRCA TCGA-EW-A1OY BIK DEL In_Frame_Del 22 43525235 TGCTGCTGGCGCTGCTGC - 59 48 BRCA TCGA-EW-A1OY WWC3 SNP Silent 23 10066593 T C 52 48 BRCA TCGA-EW-A1OY PRPS1 SNP Silent 23 106893241 A G 16 45 BRCA TCGA-EW-A1OY AVPR2 SNP Missense_Mutation 23 153171405 C T 23 65 BRCA TCGA-EW-A1OY SLC9A7 SNP Silent 23 46508206 C T 27 51 BRCA TCGA-EW-A1OY P2RY13 SNP Missense_Mutation 3 151045982 C T 29 51 BRCA TCGA-EW-A1OY SNRK DEL Frame_Shift_Del 3 43344860 AGCTA - 15 50 BRCA TCGA-EW-A1OY ADH7 SNP Missense_Mutation 4 100341943 G A 35 67 BRCA TCGA-EW-A1OY ZNF732 SNP Missense_Mutation 4 265013 G C 35 49 BRCA TCGA-EW-A1OY ZNF732 SNP Missense_Mutation 4 265525 G A 41 39 BRCA TCGA-EW-A1OY KIAA0232 SNP Missense_Mutation 4 6863905 G C 44 75 BRCA TCGA-EW-A1OY HNRNPA0 SNP Silent 5 137089510 C T 23 56 BRCA TCGA-EW-A1OY PCDHGA7 SNP Silent 5 140764593 C T 31 34 BRCA TCGA-EW-A1OY PRDM9 SNP Missense_Mutation 5 23527323 C G 20 0 BRCA TCGA-EW-A1OY C6orf118 SNP Missense_Mutation 6 165711541 G A 38 51 BRCA TCGA-EW-A1OY MRPS18B SNP Silent 6 30587568 T A 54 53 BRCA TCGA-EW-A1OY COL12A1 SNP Missense_Mutation 6 75904624 T A 62 91 BRCA TCGA-EW-A1OY ZNF292 SNP Missense_Mutation 6 87970171 G T 37 98 BRCA TCGA-EW-A1OY GIGYF1 SNP Missense_Mutation 7 100284283 G A 41 62 BRCA TCGA-EW-A1OY MLL3 SNP Nonsense_Mutation 7 151891154 G A 45 82 BRCA TCGA-EW-A1OY UPP1 SNP Missense_Mutation 7 48147844 C T 23 75 BRCA TCGA-EW-A1OY ZPBP SNP Missense_Mutation 7 50070741 C T 27 47 BRCA TCGA-EW-A1OY WDR67 SNP Nonsense_Mutation 8 124113134 G T 45 67 BRCA TCGA-EW-A1OY C9orf62 SNP Missense_Mutation 9 138235960 C T 23 51 BRCA TCGA-EW-A1OZ DENND1B SNP Missense_Mutation 1 197515103 G A 45 67 BRCA TCGA-EW-A1OZ COL16A1 SNP Missense_Mutation 1 32120447 T C 62 87 BRCA TCGA-EW-A1OZ ZCCHC11 SNP Silent 1 52911474 G A 45 54 BRCA TCGA-EW-A1OZ DHCR24 SNP Missense_Mutation 1 55349418 T G 56 69 BRCA TCGA-EW-A1OZ KIAA0913 SNP Silent 10 75557625 C T 27 88 BRCA TCGA-EW-A1OZ POLR3A SNP Silent 10 79784451 C T 32 62 BRCA TCGA-EW-A1OZ PIK3AP1 SNP Silent 10 98408467 G A 37 44 BRCA TCGA-EW-A1OZ DSCAML1 SNP Missense_Mutation 11 117302396 C T 23 98 BRCA TCGA-EW-A1OZ MLL DEL Frame_Shift_Del 11 118359392 CCTCTGG - 22 100 BRCA TCGA-EW-A1OZ MLL DEL In_Frame_Del 11 118359400 GGACCAGCTGGAAAATTG - 35 66 BRCA TCGA-EW-A1OZ ALX4 SNP Nonsense_Mutation 11 44289064 G A 39 69 BRCA TCGA-EW-A1OZ DGKZ SNP Silent 11 46398099 G A 41 61 BRCA TCGA-EW-A1OZ AGBL2 SNP Missense_Mutation 11 47735870 C T 17 60 BRCA TCGA-EW-A1OZ CACNA1C SNP Missense_Mutation 12 2675590 G A 38 100 BRCA TCGA-EW-A1OZ GXYLT1 SNP Missense_Mutation 12 42491739 A C 4 55 BRCA TCGA-EW-A1OZ OTX2 SNP Nonsense_Mutation 14 57268782 G A 45 100 BRCA TCGA-EW-A1OZ ARID3B SNP Missense_Mutation 15 74836663 G A 38 51 BRCA TCGA-EW-A1OZ ZNF434 SNP Missense_Mutation 16 3434862 G C 41 54 BRCA TCGA-EW-A1OZ MYO15A SNP Missense_Mutation 17 18046135 G A 34 51 BRCA TCGA-EW-A1OZ FBXW10 SNP Silent 17 18682066 T C 52 48 BRCA TCGA-EW-A1OZ WSB1 SNP Missense_Mutation 17 25637155 C A 32 76 BRCA TCGA-EW-A1OZ TRPV3 SNP Silent 17 3458079 G A 44 63 BRCA TCGA-EW-A1OZ NLGN2 SNP Missense_Mutation 17 7320448 C T 19 74 BRCA TCGA-EW-A1OZ TP53 SNP Nonsense_Mutation 17 7577509 C A 30 80 BRCA TCGA-EW-A1OZ SLC26A11 SNP Missense_Mutation 17 78210729 C T 31 97 BRCA TCGA-EW-A1OZ CCDC151 SNP Missense_Mutation 19 11537373 C G 30 71 BRCA TCGA-EW-A1OZ FCGBP SNP Missense_Mutation 19 40366247 C G 23 52 BRCA TCGA-EW-A1OZ C19orf10 SNP Missense_Mutation 19 4659991 T G 56 55 BRCA TCGA-EW-A1OZ NAPA SNP Missense_Mutation 19 48018149 C A 26 76 BRCA TCGA-EW-A1OZ NOSIP SNP Missense_Mutation 19 50060466 T G 56 54 BRCA TCGA-EW-A1OZ ZNF528 SNP Silent 19 52909856 C T 19 46 BRCA TCGA-EW-A1OZ ZNF611 SNP Missense_Mutation 19 53209818 G C 33 49 BRCA TCGA-EW-A1OZ FBN3 SNP Missense_Mutation 19 8152732 C T 23 76 BRCA TCGA-EW-A1OZ IL1R2 SNP Missense_Mutation 2 102632478 C T 23 53 BRCA TCGA-EW-A1OZ PRPF40A SNP Missense_Mutation 2 153515699 G A 45 100 BRCA TCGA-EW-A1OZ TMBIM1 SNP Missense_Mutation 2 219142384 T C 51 44 BRCA TCGA-EW-A1OZ NGEF SNP Missense_Mutation 2 233759478 G T 34 81 BRCA TCGA-EW-A1OZ TRAF3IP1 SNP Missense_Mutation 2 239233967 C A 29 52 BRCA TCGA-EW-A1OZ DTNB SNP Splice_site 2 25861883 G A 39 68 BRCA TCGA-EW-A1OZ SLC12A5 SNP Missense_Mutation 20 44673645 C G 32 77 BRCA TCGA-EW-A1OZ NCOA3 DEL In_Frame_Del 20 46279807 ATG - 16 54 BRCA TCGA-EW-A1OZ CTSZ SNP Missense_Mutation 20 57570749 G C 44 58 BRCA TCGA-EW-A1OZ PTK6 SNP Silent 20 62163955 G A 39 10 BRCA TCGA-EW-A1OZ PATZ1 SNP Silent 22 31731814 C T 25 56 BRCA TCGA-EW-A1OZ ATP11C SNP Missense_Mutation 23 138825729 C T 17 93 BRCA TCGA-EW-A1OZ NDUFB5 SNP Missense_Mutation 3 179322623 T G 63 76 BRCA TCGA-EW-A1OZ BDH2 SNP Silent 4 104013865 A T 1 59 BRCA TCGA-EW-A1OZ ODZ3 SNP Missense_Mutation 4 183721007 G A 41 98 BRCA TCGA-EW-A1OZ C5orf52 SNP Missense_Mutation 5 157106864 A G 9 61 BRCA TCGA-EW-A1OZ CUL9 SNP Missense_Mutation 6 43167709 A G 12 47 BRCA TCGA-EW-A1OZ ZAN SNP Missense_Mutation 7 100350499 C T 19 68 BRCA TCGA-EW-A1OZ GALNT11 SNP Missense_Mutation 7 151810418 G A 37 87 BRCA TCGA-EW-A1OZ PTPRN2 SNP Missense_Mutation 7 158109540 C T 27 52 BRCA TCGA-EW-A1OZ DERL1 SNP Silent 8 124042882 T C 49 51 BRCA TCGA-EW-A1OZ TRIM32 SNP Missense_Mutation 9 119460255 C G 17 63 BRCA TCGA-EW-A1P0 CABP2 INS Frame_Shift_Ins 11 67290059 - G 7 18 BRCA TCGA-EW-A1P0 FAT3 SNP Missense_Mutation 11 92507304 G C 45 82 BRCA TCGA-EW-A1P0 GOLGA3 SNP Missense_Mutation 12 133351864 G C 47 77 BRCA TCGA-EW-A1P0 PLCZ1 SNP Missense_Mutation 12 18837138 A G 2 54 BRCA TCGA-EW-A1P0 PPFIBP1 SNP Missense_Mutation 12 27832871 G C 35 66 BRCA TCGA-EW-A1P0 TNFRSF19 SNP Missense_Mutation 13 24242970 C A 30 54 BRCA TCGA-EW-A1P0 MSL1 SNP Silent 17 38282588 G A 34 57 BRCA TCGA-EW-A1P0 CBX1 SNP Silent 17 46148872 T A 49 62 BRCA TCGA-EW-A1P0 DHPS SNP Silent 19 12788175 G A 40 43 BRCA TCGA-EW-A1P0 TTN SNP Missense_Mutation 2 179550299 C A 17 64 BRCA TCGA-EW-A1P0 ECEL1 INS Frame_Shift_Ins 2 233350770 - A 27 46 BRCA TCGA-EW-A1P0 ALMS1 SNP Missense_Mutation 2 73653617 C A 20 54 BRCA TCGA-EW-A1P0 DCTN1 SNP Missense_Mutation 2 74595859 C T 25 98 BRCA TCGA-EW-A1P0 CELSR1 SNP Missense_Mutation 22 46932208 A G 7 74 BRCA TCGA-EW-A1P0 HTR2C SNP Missense_Mutation 23 114141530 C T 31 93 BRCA TCGA-EW-A1P0 RAP2C SNP Missense_Mutation 23 131348321 T C 51 88 BRCA TCGA-EW-A1P0 COL6A5 SNP Silent 3 130095411 G A 36 55 BRCA TCGA-EW-A1P0 PIK3CA SNP Missense_Mutation 3 178948044 A G 12 88 BRCA TCGA-EW-A1P0 MEPE SNP Missense_Mutation 4 88767390 C T 22 49 BRCA TCGA-EW-A1P0 PCDHB11 SNP Silent 5 140580709 C T 24 49 BRCA TCGA-EW-A1P0 CEP57L1 SNP Missense_Mutation 6 109483990 G T 45 65 BRCA TCGA-EW-A1P0 PKHD1L1 SNP Missense_Mutation 8 110412471 T A 59 69 BRCA TCGA-EW-A1P1 DCHS2 SNP Missense_Mutation 4 155411721 G A 39 50 BRCA TCGA-EW-A1P1 FAM47E SNP Missense_Mutation 4 77199305 C G 19 44 BRCA TCGA-EW-A1P3 NPHP4 SNP Missense_Mutation 1 5967185 G A 39 32 BRCA TCGA-EW-A1P3 GATA3 DEL Frame_Shift_Del 10 8115725 GAAG - 33 86 BRCA TCGA-EW-A1P3 SRPR SNP Missense_Mutation 11 126136761 G A 41 54 BRCA TCGA-EW-A1P3 FBLN5 SNP Missense_Mutation 14 92343923 T C 51 94 BRCA TCGA-EW-A1P3 CYFIP1 SNP Silent 15 22928474 T A 55 46 BRCA TCGA-EW-A1P3 CDYL2 SNP Silent 16 80646646 C A 25 68 BRCA TCGA-EW-A1P3 CACNA1A SNP Missense_Mutation 19 13427968 T C 49 64 BRCA TCGA-EW-A1P3 CYP4F2 SNP Missense_Mutation 19 16003198 C T 23 80 BRCA TCGA-EW-A1P3 VSTM2B SNP Missense_Mutation 19 30054758 G A 39 65 BRCA TCGA-EW-A1P3 CYTIP SNP Missense_Mutation 2 158272428 C T 32 79 BRCA TCGA-EW-A1P3 CASP8 SNP Nonsense_Mutation 2 202131411 C T 23 62 BRCA TCGA-EW-A1P3 FBXL2 SNP Missense_Mutation 3 33406169 T G 54 88 BRCA TCGA-EW-A1P3 TBC1D19 SNP Missense_Mutation 4 26622298 G A 45 80 BRCA TCGA-EW-A1P3 PKD2L2 SNP Splice_site 5 137226171 G A 43 51 BRCA TCGA-EW-A1P3 DNAH8 SNP Nonsense_Mutation 6 38867558 C T 19 70 BRCA TCGA-EW-A1P3 DST INS Frame_Shift_Ins 6 56458463 - A 61 77 BRCA TCGA-EW-A1P4 TNN SNP Missense_Mutation 1 175097249 G A 46 97 BRCA TCGA-EW-A1P4 RFWD2 SNP Silent 1 176012377 A T 5 54 BRCA TCGA-EW-A1P4 GALNT2 SNP Splice_site 1 230398319 A G 9 47 BRCA TCGA-EW-A1P4 KIAA1804 SNP Missense_Mutation 1 233518092 C T 26 75 BRCA TCGA-EW-A1P4 RYR2 SNP Missense_Mutation 1 237753140 A G 9 92 BRCA TCGA-EW-A1P4 CLCA1 SNP Missense_Mutation 1 86959277 G T 46 88 BRCA TCGA-EW-A1P4 GBF1 SNP Missense_Mutation 10 104130498 G C 33 97 BRCA TCGA-EW-A1P4 INPP5A SNP Nonsense_Mutation 10 134463965 C T 31 96 BRCA TCGA-EW-A1P4 NMT2 SNP Missense_Mutation 10 15161504 C G 32 65 BRCA TCGA-EW-A1P4 MPP7 SNP Missense_Mutation 10 28378743 C G 20 98 BRCA TCGA-EW-A1P4 ANKRD30A SNP Missense_Mutation 10 37419187 G A 37 58 BRCA TCGA-EW-A1P4 CDH23 SNP Missense_Mutation 10 73494028 G A 40 97 BRCA TCGA-EW-A1P4 POLR3A SNP Missense_Mutation 10 79778932 G T 40 49 BRCA TCGA-EW-A1P4 FAM22B SNP Silent 10 81471479 C A 24 51 BRCA TCGA-EW-A1P4 DYNC2H1 SNP Splice_site 11 103114423 G A 36 100 BRCA TCGA-EW-A1P4 TRPM5 SNP Missense_Mutation 11 2432879 C T 19 67 BRCA TCGA-EW-A1P4 NRXN2 DEL Frame_Shift_Del 11 64393940 TCGAGCAGCCACTC - 58 86 BRCA TCGA-EW-A1P4 DENND5B SNP Missense_Mutation 12 31576559 C G 32 74 BRCA TCGA-EW-A1P4 STAT6 SNP Missense_Mutation 12 57493104 C A 30 78 BRCA TCGA-EW-A1P4 TGM1 SNP Missense_Mutation 14 24724436 C G 20 83 BRCA TCGA-EW-A1P4 RALGAPA1 SNP Silent 14 36207803 G A 40 59 BRCA TCGA-EW-A1P4 DMXL2 SNP Silent 15 51773279 T C 60 50 BRCA TCGA-EW-A1P4 VPS13C SNP Missense_Mutation 15 62211583 C G 17 71 BRCA TCGA-EW-A1P4 PDILT SNP Missense_Mutation 16 20373852 C G 21 49 BRCA TCGA-EW-A1P4 UBN1 SNP Silent 16 4924574 T G 53 54 BRCA TCGA-EW-A1P4 CES5A SNP Missense_Mutation 16 55909072 G A 42 53 BRCA TCGA-EW-A1P4 CDH15 SNP Missense_Mutation 16 89256775 A C 10 86 BRCA TCGA-EW-A1P4 TOP3A DEL Frame_Shift_Del 17 18208428 GCCTTACACACGTGGATAATCTCAAACCCGATGTTTTC - 34 97 BRCA TCGA-EW-A1P4 KRTAP4-9 SNP Silent 17 39262243 C A 26 48 BRCA TCGA-EW-A1P4 KRT9 SNP Splice_Site 17 39724412 A G 14 64 BRCA TCGA-EW-A1P4 AOC3 SNP Silent 17 41004614 G A 36 52 BRCA TCGA-EW-A1P4 ABCA10 SNP Missense_Mutation 17 67190077 T C 52 64 BRCA TCGA-EW-A1P4 TP53 SNP Missense_Mutation 17 7578394 T C 51 89 BRCA TCGA-EW-A1P4 SIGLEC15 SNP Nonsense_Mutation 18 43422081 C T 21 74 BRCA TCGA-EW-A1P4 SWSAP1 SNP Missense_Mutation 19 11486428 G C 33 56 BRCA TCGA-EW-A1P4 JAK3 SNP Missense_Mutation 19 17948829 C T 26 90 BRCA TCGA-EW-A1P4 LSM14A SNP Silent 19 34712628 G A 39 54 BRCA TCGA-EW-A1P4 ZNF260 SNP Silent 19 37006039 T C 64 55 BRCA TCGA-EW-A1P4 SHANK1 SNP Missense_Mutation 19 51217448 C A 30 92 BRCA TCGA-EW-A1P4 IL37 SNP Missense_Mutation 2 113676172 A G 9 56 BRCA TCGA-EW-A1P4 DGKD SNP Missense_Mutation 2 234378033 A T 3 86 BRCA TCGA-EW-A1P4 UGT1A8 SNP Missense_Mutation 2 234526969 A G 11 52 BRCA TCGA-EW-A1P4 TRPM8 SNP Missense_Mutation 2 234871945 G A 39 73 BRCA TCGA-EW-A1P4 TCF7L1 SNP Missense_Mutation 2 85529633 C A 18 53 BRCA TCGA-EW-A1P4 YWHAH SNP Silent 22 32352686 T C 49 62 BRCA TCGA-EW-A1P4 HCFC1 SNP Missense_Mutation 23 153224852 G A 42 70 BRCA TCGA-EW-A1P4 PIK3R4 SNP Missense_Mutation 3 130447357 T C 52 90 BRCA TCGA-EW-A1P4 MSL2 SNP Silent 3 135870742 T A 51 56 BRCA TCGA-EW-A1P4 U2SURP SNP Missense_Mutation 3 142753807 A G 9 89 BRCA TCGA-EW-A1P4 CCR1 SNP Silent 3 46245442 G T 33 75 BRCA TCGA-EW-A1P4 ZFYVE28 SNP Silent 4 2341251 C G 29 53 BRCA TCGA-EW-A1P4 TXK SNP Silent 4 48115241 A G 4 49 BRCA TCGA-EW-A1P4 FYB SNP Missense_Mutation 5 39127855 T A 50 66 BRCA TCGA-EW-A1P4 LIX1 SNP Missense_Mutation 5 96430625 G C 40 72 BRCA TCGA-EW-A1P4 SPATS1 SNP Missense_Mutation 6 44328305 C T 19 64 BRCA TCGA-EW-A1P4 CCDC132 SNP Missense_Mutation 7 92926136 A G 12 88 BRCA TCGA-EW-A1P4 CSMD3 SNP Missense_Mutation 8 113933928 C T 27 56 BRCA TCGA-EW-A1P4 PLEC SNP Missense_Mutation 8 144991532 A G 10 68 BRCA TCGA-EW-A1P4 SEC16A SNP Missense_Mutation 9 139341757 G A 42 52 BRCA TCGA-EW-A1P4 CACNA1B SNP Splice_Site 9 140943768 G C 40 98 BRCA TCGA-EW-A1P4 FAM75A1 SNP Missense_Mutation 9 39361134 G T 42 43 BRCA TCGA-EW-A1P5 CELSR2 SNP Missense_Mutation 1 109814957 T C 54 84 BRCA TCGA-EW-A1P5 USH1C SNP Missense_Mutation 11 17518353 A C 12 75 BRCA TCGA-EW-A1P5 OR51E2 SNP Missense_Mutation 11 4703421 G A 37 61 BRCA TCGA-EW-A1P5 CREBL2 SNP Missense_Mutation 12 12788868 G T 37 73 BRCA TCGA-EW-A1P5 GALNT8 SNP Missense_Mutation 12 4874615 G A 38 50 BRCA TCGA-EW-A1P5 LATS2 SNP Missense_Mutation 13 21563350 G C 43 56 BRCA TCGA-EW-A1P5 UNC13C SNP Silent 15 54542602 C T 19 43 BRCA TCGA-EW-A1P5 NLRP12 SNP Missense_Mutation 19 54314050 C T 27 54 BRCA TCGA-EW-A1P5 MYT1L SNP Silent 2 1926290 C T 23 41 BRCA TCGA-EW-A1P5 SF3B1 SNP Missense_Mutation 2 198266834 T C 62 93 BRCA TCGA-EW-A1P5 GPR35 SNP Silent 2 241570107 C T 19 52 BRCA TCGA-EW-A1P5 LBH SNP Splice_site 2 30457271 C T 26 76 BRCA TCGA-EW-A1P5 MAGEA12 SNP Missense_Mutation 23 151900138 G C 33 56 BRCA TCGA-EW-A1P5 PIK3CA DEL In_Frame_Del 3 178928060 GCCAGTACCTCATGGATTAGAAGATTT - 42 98 BRCA TCGA-EW-A1P5 PIK3CA INS Frame_Shift_Ins 3 178928086 - G 63 90 BRCA TCGA-EW-A1P5 ARPP21 SNP Silent 3 35833914 C A 26 51 BRCA TCGA-EW-A1P5 DNAH1 SNP Missense_Mutation 3 52404645 C A 19 42 BRCA TCGA-EW-A1P5 GHRHR SNP Missense_Mutation 7 31013744 G A 38 65 BRCA TCGA-EW-A1P5 ADAM2 SNP Silent 8 39695678 G A 38 37 BRCA TCGA-EW-A1P6 FRRS1 SNP Missense_Mutation 1 100177672 C T 32 85 BRCA TCGA-EW-A1P6 IL10RA SNP Missense_Mutation 11 117860257 C T 23 48 BRCA TCGA-EW-A1P6 KIF26A SNP Missense_Mutation 14 104641403 C T 19 71 BRCA TCGA-EW-A1P6 WDR76 SNP Missense_Mutation 15 44158472 G T 44 42 BRCA TCGA-EW-A1P6 PRPF8 SNP Missense_Mutation 17 1576724 C T 27 100 BRCA TCGA-EW-A1P6 MBTD1 SNP Missense_Mutation 17 49270817 A G 4 72 BRCA TCGA-EW-A1P6 PLEKHG2 SNP Missense_Mutation 19 39905892 A T 8 60 BRCA TCGA-EW-A1P6 MEGF8 SNP Missense_Mutation 19 42848602 G A 38 61 BRCA TCGA-EW-A1P6 ZDBF2 SNP Missense_Mutation 2 207170549 G A 41 54 BRCA TCGA-EW-A1P6 CRIM1 SNP Missense_Mutation 2 36740755 G A 47 98 BRCA TCGA-EW-A1P6 NLGN3 SNP Missense_Mutation 23 70389880 A C 16 74 BRCA TCGA-EW-A1P6 DIAPH2 SNP Missense_Mutation 23 96684718 G A 40 89 BRCA TCGA-EW-A1P6 TIPARP SNP Silent 3 156396272 T A 55 38 BRCA TCGA-EW-A1P6 ATP13A4 SNP Silent 3 193174859 C T 21 51 BRCA TCGA-EW-A1P6 ITPR1 SNP Missense_Mutation 3 4774809 A G 16 90 BRCA TCGA-EW-A1P6 GZMA SNP Missense_Mutation 5 54405976 A G 2 49 BRCA TCGA-EW-A1P6 MAP3K1 INS Frame_Shift_Ins 5 56178143 - A 29 70 BRCA TCGA-EW-A1P6 FOXO3 DEL Frame_Shift_Del 6 108984960 CTTCC - 20 54 BRCA TCGA-EW-A1P6 PRPF4B SNP Missense_Mutation 6 4056666 A G 4 91 BRCA TCGA-EW-A1P6 PNPLA8 SNP Missense_Mutation 7 108155179 T C 51 46 BRCA TCGA-EW-A1P6 CYP11B2 SNP Silent 8 143998609 G A 46 48 BRCA TCGA-EW-A1P7 NBPF15 SNP Missense_Mutation 1 148579636 T C 64 48 BRCA TCGA-EW-A1P7 NTRK1 SNP Splice_site 1 156834219 C G 24 86 BRCA TCGA-EW-A1P7 DNAH3 SNP Silent 16 21170742 G C 37 25 BRCA TCGA-EW-A1P7 TTN SNP Missense_Mutation 2 179635029 T A 56 94 BRCA TCGA-EW-A1P7 TTC14 SNP Missense_Mutation 3 180324055 T C 60 79 BRCA TCGA-EW-A1P7 TXK SNP Missense_Mutation 4 48091792 T G 57 50 BRCA TCGA-EW-A1P7 IL11RA SNP Splice_site 9 34655661 G A 39 63 BRCA TCGA-EW-A1P8 NOTCH2 SNP Nonsense_Mutation 1 120458147 G A 38 60 BRCA TCGA-EW-A1P8 HRNR SNP Silent 1 152189263 A G 8 48 BRCA TCGA-EW-A1P8 KLHL12 SNP Missense_Mutation 1 202862535 A G 7 93 BRCA TCGA-EW-A1P8 PCNXL2 SNP Missense_Mutation 1 233394715 C G 23 51 BRCA TCGA-EW-A1P8 MTF1 SNP Missense_Mutation 1 38323086 T A 59 72 BRCA TCGA-EW-A1P8 CASP7 SNP Missense_Mutation 10 115486182 C T 30 99 BRCA TCGA-EW-A1P8 OR10G4 SNP Silent 11 123886542 C T 27 26 BRCA TCGA-EW-A1P8 ACCSL SNP Missense_Mutation 11 44081434 G C 45 43 BRCA TCGA-EW-A1P8 LRRC32 SNP Silent 11 76371884 C G 22 50 BRCA TCGA-EW-A1P8 ITPR2 SNP Missense_Mutation 12 26640139 A C 4 78 BRCA TCGA-EW-A1P8 CD9 SNP Missense_Mutation 12 6342590 C A 24 94 BRCA TCGA-EW-A1P8 COL4A2 INS Frame_Shift_Ins 13 111121578 - GAGGAAGCCTT 23 49 BRCA TCGA-EW-A1P8 COG3 SNP Silent 13 46070345 G A 34 55 BRCA TCGA-EW-A1P8 DHRS1 SNP Silent 14 24760122 C G 25 51 BRCA TCGA-EW-A1P8 HECTD1 SNP Silent 14 31582337 A C 13 55 BRCA TCGA-EW-A1P8 PDILT SNP Nonsense_Mutation 16 20387485 G A 40 53 BRCA TCGA-EW-A1P8 TMEM132E SNP Missense_Mutation 17 32961997 A G 11 90 BRCA TCGA-EW-A1P8 ATXN7L3 SNP Missense_Mutation 17 42274624 G A 37 70 BRCA TCGA-EW-A1P8 SOGA2 SNP Silent 18 8784556 G C 39 46 BRCA TCGA-EW-A1P8 SYDE1 SNP Missense_Mutation 19 15223187 C T 27 75 BRCA TCGA-EW-A1P8 SYDE1 SNP Missense_Mutation 19 15223341 A G 6 67 BRCA TCGA-EW-A1P8 SLC9A4 SNP Missense_Mutation 2 103141572 G C 43 49 BRCA TCGA-EW-A1P8 ANAPC1 SNP Missense_Mutation 2 112619981 G A 40 74 BRCA TCGA-EW-A1P8 TMEM150A SNP Silent 2 85827041 C G 23 19 BRCA TCGA-EW-A1P8 ANKRD36C INS Frame_Shift_Ins 2 96657310 - TTCA 20 56 BRCA TCGA-EW-A1P8 CHD6 SNP Missense_Mutation 20 40049505 G A 41 52 BRCA TCGA-EW-A1P8 ZNFX1 SNP Silent 20 47886966 G A 37 54 BRCA TCGA-EW-A1P8 BRWD1 DEL Frame_Shift_Del 21 40600483 CA - 29 96 BRCA TCGA-EW-A1P8 TOM1 SNP Missense_Mutation 22 35734720 C T 26 66 BRCA TCGA-EW-A1P8 ATG4A SNP Nonsense_Mutation 23 107396925 G T 45 86 BRCA TCGA-EW-A1P8 MAGEC2 SNP Missense_Mutation 23 141291033 C G 24 44 BRCA TCGA-EW-A1P8 CELSR3 SNP Nonsense_Mutation 3 48677877 G C 40 48 BRCA TCGA-EW-A1P8 APC SNP Missense_Mutation 5 112164629 G A 36 98 BRCA TCGA-EW-A1P8 SGCD SNP Missense_Mutation 5 156022038 G T 41 90 BRCA TCGA-EW-A1P8 HSP90AB1 SNP Silent 6 44218045 G A 33 54 BRCA TCGA-EW-A1P8 UFL1 SNP Splice_Site 6 96971168 G A 44 95 BRCA TCGA-EW-A1P8 LRCH4 SNP Silent 7 100180051 G C 39 21 BRCA TCGA-EW-A1P8 ZNF12 SNP Missense_Mutation 7 6731888 C T 30 50 BRCA TCGA-EW-A1P8 RNF19A SNP Silent 8 101271360 G C 38 44 BRCA TCGA-EW-A1PA PDIK1L SNP Missense_Mutation 1 26448989 C G 24 98 BRCA TCGA-EW-A1PA MUC5B SNP Silent 11 1267311 A C 6 44 BRCA TCGA-EW-A1PA MRGPRX4 SNP Missense_Mutation 11 18195501 G T 42 57 BRCA TCGA-EW-A1PA SLC6A5 SNP Silent 11 20676318 C G 27 44 BRCA TCGA-EW-A1PA OR4S2 SNP Silent 11 55419087 C G 21 51 BRCA TCGA-EW-A1PA OR5AS1 SNP Missense_Mutation 11 55798211 C A 32 50 BRCA TCGA-EW-A1PA NADSYN1 SNP Silent 11 71212359 C T 31 34 BRCA TCGA-EW-A1PA TAS2R13 SNP Missense_Mutation 12 11061465 G C 33 34 BRCA TCGA-EW-A1PA ESYT1 SNP Missense_Mutation 12 56532266 C T 27 65 BRCA TCGA-EW-A1PA MYO1A SNP Missense_Mutation 12 57437051 C A 24 50 BRCA TCGA-EW-A1PA MYCBP2 SNP Missense_Mutation 13 77656125 G C 34 71 BRCA TCGA-EW-A1PA EIF2B2 SNP Nonsense_Mutation 14 75470300 A T 5 93 BRCA TCGA-EW-A1PA RPUSD2 SNP Missense_Mutation 15 40861751 C T 23 46 BRCA TCGA-EW-A1PA DENND4A SNP Missense_Mutation 15 65994128 T C 52 93 BRCA TCGA-EW-A1PA SEPT1 SNP Missense_Mutation 16 30393112 C T 21 84 BRCA TCGA-EW-A1PA NME4 INS Frame_Shift_Ins 16 450140 - AG 19 47 BRCA TCGA-EW-A1PA PRCD SNP Silent 17 74538648 C T 32 53 BRCA TCGA-EW-A1PA TP53 SNP Nonsense_Mutation 17 7578212 G A 37 66 BRCA TCGA-EW-A1PA RPTOR SNP Missense_Mutation 17 78831617 G T 40 96 BRCA TCGA-EW-A1PA DNMT1 SNP Missense_Mutation 19 10259657 C T 31 67 BRCA TCGA-EW-A1PA LILRA6 SNP Missense_Mutation 19 54745659 G C 45 26 BRCA TCGA-EW-A1PA SLC5A7 SNP Missense_Mutation 2 108604643 T G 50 93 BRCA TCGA-EW-A1PA TTN SNP Missense_Mutation 2 179478997 C T 27 100 BRCA TCGA-EW-A1PA ZFP36L2 SNP Missense_Mutation 2 43452474 C T 31 92 BRCA TCGA-EW-A1PA CRNKL1 SNP Missense_Mutation 20 20023016 T A 51 72 BRCA TCGA-EW-A1PA PTPRT SNP Splice_site 20 41100907 G A 40 47 BRCA TCGA-EW-A1PA CXorf57 SNP Silent 23 105921404 C T 31 50 BRCA TCGA-EW-A1PA MTM1 SNP Missense_Mutation 23 149826404 G C 47 52 BRCA TCGA-EW-A1PA CCNB3 SNP Missense_Mutation 23 50051515 G A 41 48 BRCA TCGA-EW-A1PA DCHS2 SNP Missense_Mutation 4 155161799 C T 29 47 BRCA TCGA-EW-A1PA PDS5A SNP Missense_Mutation 4 39865035 A T 16 91 BRCA TCGA-EW-A1PA RBM47 SNP Silent 4 40440362 G C 33 41 BRCA TCGA-EW-A1PA PRDM9 SNP Missense_Mutation 5 23527272 A G 16 55 BRCA TCGA-EW-A1PA PLEKHG1 DEL Frame_Shift_Del 6 151151728 AGGA - 11 62 BRCA TCGA-EW-A1PA OSR2 SNP Missense_Mutation 8 99961319 C G 17 97 BRCA TCGA-EW-A1PA TSC1 SNP Missense_Mutation 9 135772703 T A 49 77 BRCA TCGA-EW-A1PA NOL8 SNP Silent 9 95077794 T C 62 50 BRCA TCGA-EW-A1PB KIAA1324 SNP Missense_Mutation 1 109743374 C G 30 100 BRCA TCGA-EW-A1PB KCND3 SNP Missense_Mutation 1 112329593 C G 32 76 BRCA TCGA-EW-A1PB SHE SNP Missense_Mutation 1 154473950 C T 31 74 BRCA TCGA-EW-A1PB ARHGEF11 SNP Silent 1 156915883 G A 45 51 BRCA TCGA-EW-A1PB OR10J5 SNP Silent 1 159505696 G C 33 55 BRCA TCGA-EW-A1PB PIGM SNP Missense_Mutation 1 160000705 G C 33 70 BRCA TCGA-EW-A1PB ZNF678 SNP Missense_Mutation 1 227842649 G C 41 69 BRCA TCGA-EW-A1PB ERMAP SNP Silent 1 43296767 C A 23 54 BRCA TCGA-EW-A1PB NEXN SNP Missense_Mutation 1 78395103 G C 33 72 BRCA TCGA-EW-A1PB CACNB2 DEL Frame_Shift_Del 10 18807853 GCAAAAA - 46 98 BRCA TCGA-EW-A1PB MLLT10 SNP Missense_Mutation 10 21962594 C G 32 89 BRCA TCGA-EW-A1PB FAM21C SNP Splice_site 10 46252586 A G 3 50 BRCA TCGA-EW-A1PB PLAC9 SNP Missense_Mutation 10 81901933 G C 41 70 BRCA TCGA-EW-A1PB BIRC3 DEL Frame_Shift_Del 11 102206908 CT - 20 54 BRCA TCGA-EW-A1PB MUC5B SNP Missense_Mutation 11 1272209 C T 21 55 BRCA TCGA-EW-A1PB LDHC SNP Missense_Mutation 11 18434280 G C 41 64 BRCA TCGA-EW-A1PB C11orf40 INS Frame_Shift_Ins 11 4592708 - AG 17 47 BRCA TCGA-EW-A1PB SSRP1 SNP Splice_Site 11 57099625 C A 18 96 BRCA TCGA-EW-A1PB TMEM223 SNP Silent 11 62558104 C G 30 51 BRCA TCGA-EW-A1PB STIP1 SNP Missense_Mutation 11 63970680 G C 33 99 BRCA TCGA-EW-A1PB SNX15 SNP Missense_Mutation 11 64803125 C A 32 63 BRCA TCGA-EW-A1PB KDM2A SNP Missense_Mutation 11 66999259 G A 41 71 BRCA TCGA-EW-A1PB TYR SNP Missense_Mutation 11 88961113 C T 24 64 BRCA TCGA-EW-A1PB UTP20 SNP Missense_Mutation 12 101699730 G A 45 93 BRCA TCGA-EW-A1PB SPIC SNP Silent 12 101871392 G C 45 54 BRCA TCGA-EW-A1PB NT5DC3 SNP Missense_Mutation 12 104200107 C G 17 97 BRCA TCGA-EW-A1PB TCP11L2 SNP Nonsense_Mutation 12 106729428 C T 29 57 BRCA TCGA-EW-A1PB DNAH10 SNP Missense_Mutation 12 124281372 G T 41 96 BRCA TCGA-EW-A1PB MANSC4 SNP Missense_Mutation 12 27916222 C T 32 54 BRCA TCGA-EW-A1PB HOXC6 DEL Splice_site 12 54422706 GTGA - 44 94 BRCA TCGA-EW-A1PB NALCN SNP Silent 13 101777015 G A 45 70 BRCA TCGA-EW-A1PB TPP2 SNP Missense_Mutation 13 103281891 G A 36 98 BRCA TCGA-EW-A1PB RIN3 SNP Silent 14 93118024 C G 29 58 BRCA TCGA-EW-A1PB MEIS2 DEL Frame_Shift_Del 15 37184576 TGGGGAGGAGTGTAACT - 55 65 BRCA TCGA-EW-A1PB OIP5 SNP Missense_Mutation 15 41624735 G C 37 39 BRCA TCGA-EW-A1PB WDR72 SNP Silent 15 53908000 G A 42 57 BRCA TCGA-EW-A1PB ULK3 SNP Missense_Mutation 15 75131064 G A 34 93 BRCA TCGA-EW-A1PB HOMER2 SNP Missense_Mutation 15 83523419 C T 29 83 BRCA TCGA-EW-A1PB VPS33B SNP Missense_Mutation 15 91561082 C G 32 86 BRCA TCGA-EW-A1PB SALL1 SNP Missense_Mutation 16 51175790 C G 32 77 BRCA TCGA-EW-A1PB KCTD19 SNP Missense_Mutation 16 67325347 G C 33 68 BRCA TCGA-EW-A1PB PRMT7 SNP Missense_Mutation 16 68382280 C G 17 47 BRCA TCGA-EW-A1PB CDRT1 SNP Missense_Mutation 17 15522583 C T 22 69 BRCA TCGA-EW-A1PB DNAI2 SNP Silent 17 72308231 G A 43 55 BRCA TCGA-EW-A1PB FAM100B DEL In_Frame_Del 17 74262032 CCA - 26 50 BRCA TCGA-EW-A1PB TP53 SNP Missense_Mutation 17 7578442 T C 57 69 BRCA TCGA-EW-A1PB TNRC6C SNP Missense_Mutation 17 76047128 G A 42 70 BRCA TCGA-EW-A1PB GLP2R SNP Silent 17 9764490 C T 31 16 BRCA TCGA-EW-A1PB RBBP8 SNP Missense_Mutation 18 20581659 G C 41 51 BRCA TCGA-EW-A1PB ASXL3 SNP Silent 18 31325407 C T 29 57 BRCA TCGA-EW-A1PB LOXHD1 SNP Missense_Mutation 18 44125353 C G 32 72 BRCA TCGA-EW-A1PB ACAA2 SNP Missense_Mutation 18 47311649 C T 17 78 BRCA TCGA-EW-A1PB ANKRD12 SNP Nonsense_Mutation 18 9257247 G T 33 77 BRCA TCGA-EW-A1PB ILF3 SNP Splice_site 19 10795141 G C 33 71 BRCA TCGA-EW-A1PB CCDC130 SNP Silent 19 13870017 C T 17 67 BRCA TCGA-EW-A1PB EPHX3 SNP Missense_Mutation 19 15342092 C G 31 59 BRCA TCGA-EW-A1PB BRD4 SNP Missense_Mutation 19 15350784 C G 17 53 BRCA TCGA-EW-A1PB ZNF676 SNP Missense_Mutation 19 22363099 C G 32 68 BRCA TCGA-EW-A1PB GPATCH1 SNP Nonsense_Mutation 19 33602732 C A 31 96 BRCA TCGA-EW-A1PB IL28B SNP Silent 19 39734335 G A 45 55 BRCA TCGA-EW-A1PB FCGBP SNP Missense_Mutation 19 40402300 G A 46 60 BRCA TCGA-EW-A1PB CREB3L3 SNP Missense_Mutation 19 4157065 C T 30 83 BRCA TCGA-EW-A1PB CCDC94 SNP Silent 19 4254420 C T 30 52 BRCA TCGA-EW-A1PB CLPTM1 SNP Silent 19 45494525 C G 32 56 BRCA TCGA-EW-A1PB NAPA SNP Missense_Mutation 19 47996232 C G 29 97 BRCA TCGA-EW-A1PB LIG1 SNP Missense_Mutation 19 48653045 G C 41 52 BRCA TCGA-EW-A1PB LILRA4 SNP Silent 19 54848304 G A 33 64 BRCA TCGA-EW-A1PB NLRP4 SNP Missense_Mutation 19 56370171 A T 12 52 BRCA TCGA-EW-A1PB ZNF587 SNP Missense_Mutation 19 58370285 C T 26 55 BRCA TCGA-EW-A1PB PEX11G SNP Missense_Mutation 19 7547069 G T 41 77 BRCA TCGA-EW-A1PB GRHL1 SNP Missense_Mutation 2 10126310 G A 43 100 BRCA TCGA-EW-A1PB RGPD4 SNP Missense_Mutation 2 108487221 G C 45 68 BRCA TCGA-EW-A1PB POTEE SNP Missense_Mutation 2 132021709 C T 18 76 BRCA TCGA-EW-A1PB NEB SNP Missense_Mutation 2 152435968 C G 32 70 BRCA TCGA-EW-A1PB NBAS SNP Missense_Mutation 2 15374818 C G 32 50 BRCA TCGA-EW-A1PB PLA2R1 SNP Missense_Mutation 2 160825803 G C 45 69 BRCA TCGA-EW-A1PB GALNT3 SNP Nonsense_Mutation 2 166611525 G A 45 86 BRCA TCGA-EW-A1PB SMC6 SNP Missense_Mutation 2 17896164 G A 33 65 BRCA TCGA-EW-A1PB BMPR2 SNP Missense_Mutation 2 203420345 C G 22 100 BRCA TCGA-EW-A1PB PLEKHM3 SNP Nonsense_Mutation 2 208811101 G C 45 69 BRCA TCGA-EW-A1PB DES SNP Silent 2 220283541 C T 31 64 BRCA TCGA-EW-A1PB OTOF SNP Missense_Mutation 2 26688938 C G 30 87 BRCA TCGA-EW-A1PB PPM1B SNP Nonsense_Mutation 2 44428733 C G 29 100 BRCA TCGA-EW-A1PB MTIF2 SNP Silent 2 55470655 C T 32 63 BRCA TCGA-EW-A1PB SMEK2 SNP Missense_Mutation 2 55806833 C T 32 78 BRCA TCGA-EW-A1PB MYH7B SNP Missense_Mutation 20 33568430 C A 21 97 BRCA TCGA-EW-A1PB DNTTIP1 SNP Missense_Mutation 20 44429777 T A 49 58 BRCA TCGA-EW-A1PB PREX1 SNP Nonsense_Mutation 20 47309237 C A 30 100 BRCA TCGA-EW-A1PB DIDO1 SNP Missense_Mutation 20 61522371 A C 7 79 BRCA TCGA-EW-A1PB CHRNA4 SNP Missense_Mutation 20 61982113 G C 44 55 BRCA TCGA-EW-A1PB PRPF6 SNP Missense_Mutation 20 62616368 A C 1 91 BRCA TCGA-EW-A1PB MYT1 SNP Missense_Mutation 20 62868702 A T 5 93 BRCA TCGA-EW-A1PB NF2 DEL In_Frame_Del 22 30032827 ATCAAGGACACAGTGGCC - 4 60 BRCA TCGA-EW-A1PB RNF128 SNP Missense_Mutation 23 105937522 G A 33 72 BRCA TCGA-EW-A1PB XPNPEP2 SNP Missense_Mutation 23 128889307 A C 8 82 BRCA TCGA-EW-A1PB BCORL1 SNP Missense_Mutation 23 129149215 C G 18 63 BRCA TCGA-EW-A1PB USP26 SNP Silent 23 132160197 G T 33 54 BRCA TCGA-EW-A1PB SLC35A2 SNP Missense_Mutation 23 48762118 G A 39 36 BRCA TCGA-EW-A1PB BBX SNP Missense_Mutation 3 107451818 G C 41 98 BRCA TCGA-EW-A1PB KIAA2018 SNP Missense_Mutation 3 113379916 C G 29 78 BRCA TCGA-EW-A1PB SLC15A2 SNP Missense_Mutation 3 121658238 C G 30 53 BRCA TCGA-EW-A1PB MYLK SNP Nonsense_Mutation 3 123376021 C A 29 86 BRCA TCGA-EW-A1PB XRN1 SNP Silent 3 142095323 T C 62 64 BRCA TCGA-EW-A1PB CNTN6 SNP Silent 3 1444013 G A 42 58 BRCA TCGA-EW-A1PB CYP8B1 SNP Missense_Mutation 3 42917067 A C 8 64 BRCA TCGA-EW-A1PB NBEAL2 SNP Nonsense_Mutation 3 47045824 C T 29 96 BRCA TCGA-EW-A1PB COL7A1 SNP Missense_Mutation 3 48613091 C A 30 73 BRCA TCGA-EW-A1PB ELF2 SNP Missense_Mutation 4 139980675 G A 46 95 BRCA TCGA-EW-A1PB GUCY1A3 SNP Missense_Mutation 4 156634276 C G 32 64 BRCA TCGA-EW-A1PB UGT2A1 SNP Nonsense_Mutation 4 70504739 G C 45 81 BRCA TCGA-EW-A1PB PCDHGB4 SNP Missense_Mutation 5 140767563 C A 30 77 BRCA TCGA-EW-A1PB G3BP1 SNP Missense_Mutation 5 151179507 C G 29 94 BRCA TCGA-EW-A1PB IQGAP2 SNP Silent 5 75969810 G A 33 99 BRCA TCGA-EW-A1PB CCNH SNP Missense_Mutation 5 86703897 C G 29 82 BRCA TCGA-EW-A1PB CDC40 SNP Missense_Mutation 6 110531945 G C 33 83 BRCA TCGA-EW-A1PB UTRN SNP Missense_Mutation 6 144869832 C A 29 79 BRCA TCGA-EW-A1PB PDE10A SNP Missense_Mutation 6 165827098 C G 18 100 BRCA TCGA-EW-A1PB PDE10A SNP Silent 6 165832134 G T 47 81 BRCA TCGA-EW-A1PB HIST1H2BK SNP Missense_Mutation 6 27114571 C T 30 92 BRCA TCGA-EW-A1PB PRPF4B SNP Missense_Mutation 6 4037783 G A 33 88 BRCA TCGA-EW-A1PB PRICKLE4 SNP Missense_Mutation 6 41753249 C G 28 49 BRCA TCGA-EW-A1PB TOMM6 SNP Missense_Mutation 6 41757047 C A 25 84 BRCA TCGA-EW-A1PB PPP2R5D SNP Missense_Mutation 6 42976473 C G 32 69 BRCA TCGA-EW-A1PB HSP90AB1 SNP Silent 6 44219554 G A 33 62 BRCA TCGA-EW-A1PB MUT SNP Missense_Mutation 6 49426879 T C 57 76 BRCA TCGA-EW-A1PB ICK SNP Silent 6 52876589 C T 29 61 BRCA TCGA-EW-A1PB SMAP1 SNP Missense_Mutation 6 71546704 G C 41 84 BRCA TCGA-EW-A1PB ZNF292 SNP Silent 6 87964520 G A 45 56 BRCA TCGA-EW-A1PB SERPINE1 SNP Silent 7 100773847 G T 48 49 BRCA TCGA-EW-A1PB DOCK4 SNP Splice_site 7 111395657 T A 54 91 BRCA TCGA-EW-A1PB ZNF277 SNP Missense_Mutation 7 111846820 C T 23 17 BRCA TCGA-EW-A1PB CHRM2 SNP Missense_Mutation 7 136699784 A T 5 91 BRCA TCGA-EW-A1PB ADCK2 SNP Missense_Mutation 7 140389402 G C 33 45 BRCA TCGA-EW-A1PB FAM131B SNP Missense_Mutation 7 143055977 C G 30 93 BRCA TCGA-EW-A1PB DNAH11 SNP Missense_Mutation 7 21603876 C T 19 55 BRCA TCGA-EW-A1PB PRKAR1B SNP Silent 7 720286 G C 43 17 BRCA TCGA-EW-A1PB CACNA2D1 SNP Missense_Mutation 7 81714138 G A 45 100 BRCA TCGA-EW-A1PB ABCB4 SNP Missense_Mutation 7 87069137 A C 2 92 BRCA TCGA-EW-A1PB BMP1 SNP Nonsense_Mutation 8 22052371 G A 42 97 BRCA TCGA-EW-A1PB POLR3D SNP Silent 8 22107968 C T 19 47 BRCA TCGA-EW-A1PB TMEM68 SNP Silent 8 56668876 G A 45 56 BRCA TCGA-EW-A1PB PTPN3 DEL Frame_Shift_Del 9 112199160 TACCC - 49 70 BRCA TCGA-EW-A1PD ITLN2 SNP Silent 1 160921037 C T 32 70 BRCA TCGA-EW-A1PD ZBTB8OS SNP Missense_Mutation 1 33099280 T C 49 68 BRCA TCGA-EW-A1PD ZMPSTE24 SNP Missense_Mutation 1 40734181 G C 33 97 BRCA TCGA-EW-A1PD ZMYND12 SNP Missense_Mutation 1 42905556 C T 29 71 BRCA TCGA-EW-A1PD RNF220 SNP Missense_Mutation 1 45110399 G C 33 96 BRCA TCGA-EW-A1PD GSTO2 SNP Missense_Mutation 10 106037866 T A 52 90 BRCA TCGA-EW-A1PD TIAL1 SNP Missense_Mutation 10 121347702 G C 45 100 BRCA TCGA-EW-A1PD TTC40 SNP Splice_Site 10 134754565 C A 24 78 BRCA TCGA-EW-A1PD CUBN SNP Missense_Mutation 10 17110195 G A 36 84 BRCA TCGA-EW-A1PD TSPAN32 SNP Missense_Mutation 11 2337855 G C 42 54 BRCA TCGA-EW-A1PD TRPM5 SNP Missense_Mutation 11 2439002 C T 22 58 BRCA TCGA-EW-A1PD FAM111A SNP Missense_Mutation 11 58920622 C G 25 45 BRCA TCGA-EW-A1PD MS4A10 SNP Missense_Mutation 11 60558546 C A 30 73 BRCA TCGA-EW-A1PD PPP1R32 SNP Missense_Mutation 11 61249870 G C 36 37 BRCA TCGA-EW-A1PD PPP1R32 SNP Splice_site 11 61253382 C A 24 76 BRCA TCGA-EW-A1PD FADS1 DEL Frame_Shift_Del 11 61578278 GGGTCTTTGC - 47 96 BRCA TCGA-EW-A1PD PC SNP Missense_Mutation 11 66619395 C T 25 93 BRCA TCGA-EW-A1PD UHRF1BP1L SNP Missense_Mutation 12 100496589 C G 32 99 BRCA TCGA-EW-A1PD FBXW8 SNP Missense_Mutation 12 117465283 C G 18 63 BRCA TCGA-EW-A1PD SLC26A10 SNP Missense_Mutation 12 58018918 C T 26 45 BRCA TCGA-EW-A1PD C12orf56 SNP Missense_Mutation 12 64746739 T G 64 49 BRCA TCGA-EW-A1PD PLXNC1 SNP Silent 12 94673274 C T 30 63 BRCA TCGA-EW-A1PD ATP8A2 SNP Splice_site 13 26129206 G A 35 85 BRCA TCGA-EW-A1PD RB1 DEL Frame_Shift_Del 13 49039423 ACATCTAT - 2 90 BRCA TCGA-EW-A1PD SLITRK6 SNP Missense_Mutation 13 86369992 T A 63 91 BRCA TCGA-EW-A1PD CCDC88C SNP Missense_Mutation 14 91779648 C T 30 75 BRCA TCGA-EW-A1PD PKM SNP Missense_Mutation 15 72499505 C T 25 100 BRCA TCGA-EW-A1PD MGRN1 SNP Silent 16 4715104 G T 47 52 BRCA TCGA-EW-A1PD KSR1 SNP Missense_Mutation 17 25937188 T G 55 91 BRCA TCGA-EW-A1PD CDK12 SNP Nonsense_Mutation 17 37627547 G T 37 72 BRCA TCGA-EW-A1PD ERBB2 SNP Missense_Mutation 17 37872089 T G 49 59 BRCA TCGA-EW-A1PD CNTNAP1 SNP Missense_Mutation 17 40835917 C T 27 62 BRCA TCGA-EW-A1PD MKS1 SNP Silent 17 56285904 T G 59 47 BRCA TCGA-EW-A1PD ACE INS Frame_Shift_Ins 17 61566485 - C 6 80 BRCA TCGA-EW-A1PD BPTF SNP Missense_Mutation 17 65925540 G T 41 51 BRCA TCGA-EW-A1PD GCGR SNP Missense_Mutation 17 79769817 C A 19 51 BRCA TCGA-EW-A1PD KRBA2 SNP Missense_Mutation 17 8273116 G A 41 66 BRCA TCGA-EW-A1PD METTL4 SNP Missense_Mutation 18 2567097 G C 36 55 BRCA TCGA-EW-A1PD TYMS SNP Missense_Mutation 18 670739 T C 53 92 BRCA TCGA-EW-A1PD EMR3 SNP Splice_Site 19 14743731 A T 14 60 BRCA TCGA-EW-A1PD TSHZ3 SNP Missense_Mutation 19 31769348 T G 59 65 BRCA TCGA-EW-A1PD NFKBID DEL In_Frame_Del 19 36387325 GCCACGTGCAAGACC - 42 77 BRCA TCGA-EW-A1PD ZNF582 SNP Missense_Mutation 19 56896271 C G 22 35 BRCA TCGA-EW-A1PD RANBP3 SNP Silent 19 5918623 G A 36 62 BRCA TCGA-EW-A1PD MBD5 SNP Nonsense_Mutation 2 149247498 G T 41 83 BRCA TCGA-EW-A1PD ARL6IP6 SNP Missense_Mutation 2 153591569 G C 41 93 BRCA TCGA-EW-A1PD ACVR1C SNP Missense_Mutation 2 158399221 T G 56 79 BRCA TCGA-EW-A1PD CCDC173 SNP Missense_Mutation 2 170537535 G C 36 38 BRCA TCGA-EW-A1PD GULP1 SNP Silent 2 189452661 A G 4 59 BRCA TCGA-EW-A1PD SPHKAP SNP Silent 2 228855884 C T 27 52 BRCA TCGA-EW-A1PD ATG16L1 SNP Missense_Mutation 2 234201045 C G 29 68 BRCA TCGA-EW-A1PD COL6A3 SNP Missense_Mutation 2 238262027 C A 26 89 BRCA TCGA-EW-A1PD LRRTM1 SNP Silent 2 80530609 C T 25 63 BRCA TCGA-EW-A1PD TRPM2 SNP Missense_Mutation 21 45843548 T G 55 59 BRCA TCGA-EW-A1PD ZC3H7B SNP Missense_Mutation 22 41752463 G A 41 86 BRCA TCGA-EW-A1PD MAGEB18 SNP Missense_Mutation 23 26157290 C T 27 23 BRCA TCGA-EW-A1PD FAM9B SNP Missense_Mutation 23 9000176 G T 36 44 BRCA TCGA-EW-A1PD SLC35A5 SNP Missense_Mutation 3 112299994 A G 6 77 BRCA TCGA-EW-A1PD WDR52 SNP Missense_Mutation 3 113098230 C T 29 50 BRCA TCGA-EW-A1PD WDR52 SNP Nonsense_Mutation 3 113122794 G A 37 71 BRCA TCGA-EW-A1PD ZBTB20 SNP Silent 3 114069881 C T 21 53 BRCA TCGA-EW-A1PD KLF15 SNP Missense_Mutation 3 126070957 G A 41 81 BRCA TCGA-EW-A1PD TMCC1 SNP Missense_Mutation 3 129389639 C G 24 98 BRCA TCGA-EW-A1PD EIF4G1 SNP Missense_Mutation 3 184039523 C A 21 55 BRCA TCGA-EW-A1PD CAMK2D SNP Missense_Mutation 4 114429417 T A 56 78 BRCA TCGA-EW-A1PD GRXCR2 SNP Silent 5 145252322 G A 41 54 BRCA TCGA-EW-A1PD GRM1 SNP Missense_Mutation 6 146480580 G T 43 97 BRCA TCGA-EW-A1PD SLC22A3 SNP Silent 6 160858218 C T 26 51 BRCA TCGA-EW-A1PD COL9A1 SNP Silent 6 70935663 G A 40 52 BRCA TCGA-EW-A1PD PTPRZ1 SNP Missense_Mutation 7 121698936 T A 56 93 BRCA TCGA-EW-A1PD ZMIZ2 DEL Splice_Site 7 44805751 CTCCTCTCACA - 32 47 BRCA TCGA-EW-A1PD RB1CC1 SNP Missense_Mutation 8 53570383 C A 32 66 BRCA TCGA-EW-A1PD CNGB3 SNP Missense_Mutation 8 87588343 C T 29 58 BRCA TCGA-EW-A1PE DENND4B INS Frame_Shift_Ins 1 153907305 - C 48 57 BRCA TCGA-EW-A1PE STX6 SNP Missense_Mutation 1 180971828 C T 29 93 BRCA TCGA-EW-A1PE PHB2 SNP Missense_Mutation 12 7074852 T G 64 71 BRCA TCGA-EW-A1PE BRCA2 SNP Missense_Mutation 13 32911964 G C 41 53 BRCA TCGA-EW-A1PE BRCA2 SNP Missense_Mutation 13 32912065 G C 36 44 BRCA TCGA-EW-A1PE INTS6 SNP Missense_Mutation 13 52026554 C T 29 66 BRCA TCGA-EW-A1PE GOLGA6L2 SNP Missense_Mutation 15 23689114 C T 26 NaN BRCA TCGA-EW-A1PE DNAH9 SNP Silent 17 11772531 C T 23 39 BRCA TCGA-EW-A1PE MAP2K4 DEL Frame_Shift_Del 17 12016647 AA - 5 48 BRCA TCGA-EW-A1PE SGSM2 SNP Missense_Mutation 17 2265513 T C 54 88 BRCA TCGA-EW-A1PE TAOK1 SNP Missense_Mutation 17 27804712 G T 41 85 BRCA TCGA-EW-A1PE RASIP1 SNP Nonsense_Mutation 19 49227977 G A 40 63 BRCA TCGA-EW-A1PE ARHGEF4 SNP Missense_Mutation 2 131785560 A T 9 82 BRCA TCGA-EW-A1PE SNED1 SNP Silent 2 241989250 C T 27 48 BRCA TCGA-EW-A1PE CDH26 SNP Silent 20 58559737 A G 1 54 BRCA TCGA-EW-A1PE TNRC6B SNP Missense_Mutation 22 40661715 A G 2 57 BRCA TCGA-EW-A1PE ATP6AP1 INS In_Frame_Ins 23 153657133 - GGCGGC 63 40 BRCA TCGA-EW-A1PE PIK3CA SNP Missense_Mutation 3 178936094 C A 25 98 BRCA TCGA-EW-A1PE PIK3CA SNP Missense_Mutation 3 178952018 A G 10 91 BRCA TCGA-EW-A1PE MUC4 SNP Missense_Mutation 3 195510372 G C 48 50 BRCA TCGA-EW-A1PE OR5H1 SNP Silent 3 97851916 C T 21 50 BRCA TCGA-EW-A1PE FBXW7 SNP Missense_Mutation 4 153251936 C T 32 100 BRCA TCGA-EW-A1PE ADAM29 SNP Missense_Mutation 4 175896768 C T 23 52 BRCA TCGA-EW-A1PE CEP120 DEL In_Frame_Del 5 122682280 TCC - 50 82 BRCA TCGA-EW-A1PE GABRG2 SNP Missense_Mutation 5 161576176 G T 44 88 BRCA TCGA-EW-A1PE PTGER4 SNP Silent 5 40692393 C T 27 45 BRCA TCGA-EW-A1PE THBS4 SNP Missense_Mutation 5 79355631 G A 37 70 BRCA TCGA-EW-A1PE RASGRF2 SNP Missense_Mutation 5 80338748 G A 38 93 BRCA TCGA-EW-A1PE CITED2 SNP Missense_Mutation 6 139694508 T C 55 49 BRCA TCGA-EW-A1PE C9orf174 SNP Missense_Mutation 9 100087310 G A 37 77 BRCA TCGA-EW-A1PE CRAT SNP Missense_Mutation 9 131859542 C T 26 54 BRCA TCGA-EW-A1PE CREB3 SNP Silent 9 35733103 C G 24 72 BRCA TCGA-EW-A1PE PRKACG SNP Silent 9 71628862 C A 27 42 BRCA TCGA-EW-A1PG CADM3 SNP Missense_Mutation 1 159163753 C T 27 56 BRCA TCGA-EW-A1PG GBP1 SNP Silent 1 89519074 C T 31 47 BRCA TCGA-EW-A1PG NEUROD1 SNP Missense_Mutation 2 182542799 A T 4 44 BRCA TCGA-EW-A1PG KLF7 SNP Nonsense_Mutation 2 207988824 A T 13 93 BRCA TCGA-EW-A1PG NAA20 SNP Silent 20 20003112 A G 6 43 BRCA TCGA-EW-A1PG CDH26 SNP Nonsense_Mutation 20 58559787 T A 61 48 BRCA TCGA-EW-A1PG IL10RB SNP Missense_Mutation 21 34668541 C T 31 60 BRCA TCGA-EW-A1PG FRAS1 SNP Silent 4 79462038 G A 33 51 BRCA TCGA-EW-A1PH AMPD1 SNP Missense_Mutation 1 115217393 G C 45 89 BRCA TCGA-EW-A1PH VPS13D SNP Silent 1 12368636 A T 7 50 BRCA TCGA-EW-A1PH GJA8 SNP Silent 1 147380700 C T 30 63 BRCA TCGA-EW-A1PH PRUNE SNP Missense_Mutation 1 150998051 A G 10 84 BRCA TCGA-EW-A1PH LAMC1 DEL In_Frame_Del 1 183093958 AAG - 1 63 BRCA TCGA-EW-A1PH TROVE2 INS Splice_site 1 193054120 - A 17 46 BRCA TCGA-EW-A1PH PROX1 SNP Missense_Mutation 1 214184963 G A 37 100 BRCA TCGA-EW-A1PH RYR2 SNP Missense_Mutation 1 237806646 G A 41 88 BRCA TCGA-EW-A1PH HOOK1 SNP Missense_Mutation 1 60306040 A G 3 54 BRCA TCGA-EW-A1PH PCDH15 SNP Missense_Mutation 10 55582871 T A 64 50 BRCA TCGA-EW-A1PH ARFIP2 SNP Nonstop_Mutation 11 6499366 T C 53 47 BRCA TCGA-EW-A1PH KRT7 SNP Missense_Mutation 12 52636898 G C 45 95 BRCA TCGA-EW-A1PH LGR5 SNP Silent 12 71833917 G A 37 58 BRCA TCGA-EW-A1PH AP1G2 SNP Missense_Mutation 14 24032994 G T 42 60 BRCA TCGA-EW-A1PH CEP128 SNP Missense_Mutation 14 81329196 G A 38 53 BRCA TCGA-EW-A1PH LPCAT4 SNP Nonsense_Mutation 15 34655637 C T 30 72 BRCA TCGA-EW-A1PH MYLPF SNP Missense_Mutation 16 30389183 T C 53 86 BRCA TCGA-EW-A1PH DNAH9 SNP Missense_Mutation 17 11597227 C G 28 65 BRCA TCGA-EW-A1PH TP53 DEL Frame_Shift_Del 17 7577061 CTTT - 24 59 BRCA TCGA-EW-A1PH TIMM22 SNP Silent 17 900427 A G 7 49 BRCA TCGA-EW-A1PH CEACAM4 SNP Missense_Mutation 19 42126986 C T 19 41 BRCA TCGA-EW-A1PH RPL18 SNP Splice_site 19 49119337 G A 39 47 BRCA TCGA-EW-A1PH DKKL1 SNP Nonsense_Mutation 19 49878066 G A 41 71 BRCA TCGA-EW-A1PH USP29 SNP Nonsense_Mutation 19 57641241 G T 33 45 BRCA TCGA-EW-A1PH LCT SNP Silent 2 136566347 A G 7 42 BRCA TCGA-EW-A1PH SCN7A SNP Missense_Mutation 2 167284443 C T 27 46 BRCA TCGA-EW-A1PH LRP2 SNP Missense_Mutation 2 170134405 G T 46 88 BRCA TCGA-EW-A1PH KIAA1715 SNP Splice_site 2 176802242 G C 34 97 BRCA TCGA-EW-A1PH RDH14 SNP Missense_Mutation 2 18736520 C G 21 73 BRCA TCGA-EW-A1PH MMP11 SNP Missense_Mutation 22 24124523 G A 37 72 BRCA TCGA-EW-A1PH BCOR SNP Silent 23 39931968 G A 39 62 BRCA TCGA-EW-A1PH SYNPO2 SNP Silent 4 119952720 G A 38 43 BRCA TCGA-EW-A1PH RFC1 SNP Missense_Mutation 4 39301747 T C 64 94 BRCA TCGA-EW-A1PH CD14 SNP Missense_Mutation 5 140012442 G T 42 67 BRCA TCGA-EW-A1PH PDZD2 SNP Missense_Mutation 5 32090922 G C 45 53 BRCA TCGA-EW-A1PH ZBTB9 SNP Missense_Mutation 6 33424124 G A 46 95 BRCA TCGA-EW-A1PH ABCB5 SNP Missense_Mutation 7 20687685 C T 29 82 BRCA TCGA-EW-A1PH SYBU SNP Missense_Mutation 8 110655166 A G 1 59 BRCA TCGA-EW-A1PH ZNF251 SNP Missense_Mutation 8 145947814 C T 23 75 BRCA TCGA-EW-A1PH PXDNL SNP Missense_Mutation 8 52321996 G T 47 68 BRCA TCGA-EW-A1PH KIAA1429 SNP Missense_Mutation 8 95500959 C T 19 93 BRCA TCGA-EW-A1PH COL5A1 SNP Splice_site 9 137623972 C T 23 95 BRCA TCGA-EW-A1PH NOTCH1 INS Frame_Shift_Ins 9 139390869 - CCTGGCTC 46 68 BRCA TCGA-EW-A1PH NOTCH1 INS In_Frame_Ins 9 139390877 - CCT 31 45 BRCA TCGA-EW-A1PH LINGO2 SNP Silent 9 27949218 G A 37 39 BRCA TCGA-EW-A1PH KIAA0020 SNP Missense_Mutation 9 2812275 G C 48 84 BRCA TCGA-GI-A2C8 SRM SNP Missense_Mutation 1 11119330 C G 24 70 BRCA TCGA-GI-A2C8 POGZ SNP Missense_Mutation 1 151377893 C G 28 58 BRCA TCGA-GI-A2C8 LCE4A SNP Missense_Mutation 1 152681654 C T 18 55 BRCA TCGA-GI-A2C8 FHAD1 SNP Silent 1 15702190 G C 39 46 BRCA TCGA-GI-A2C8 HMCN1 SNP Silent 1 186026400 T C 55 51 BRCA TCGA-GI-A2C8 MDM4 SNP Missense_Mutation 1 204506608 A T 3 64 BRCA TCGA-GI-A2C8 MARK1 SNP Missense_Mutation 1 220752703 C G 32 100 BRCA TCGA-GI-A2C8 USP48 SNP Missense_Mutation 1 22084163 C G 32 93 BRCA TCGA-GI-A2C8 OBSCN SNP Silent 1 228495195 A T 7 50 BRCA TCGA-GI-A2C8 SNX7 SNP Missense_Mutation 1 99157223 G C 33 75 BRCA TCGA-GI-A2C8 FAM160B1 SNP Nonsense_Mutation 10 116602860 C T 29 73 BRCA TCGA-GI-A2C8 FGFR2 SNP Missense_Mutation 10 123258049 G C 48 54 BRCA TCGA-GI-A2C8 FAM170B SNP Missense_Mutation 10 50340195 A T 6 49 BRCA TCGA-GI-A2C8 PRDM10 SNP Missense_Mutation 11 129817174 C A 32 72 BRCA TCGA-GI-A2C8 VPS26B SNP Silent 11 134104810 G T 41 52 BRCA TCGA-GI-A2C8 OR52K2 SNP Silent 11 4470851 A T 13 50 BRCA TCGA-GI-A2C8 NXF1 SNP Silent 11 62561771 T C 51 33 BRCA TCGA-GI-A2C8 NDUFV1 SNP Missense_Mutation 11 67375917 T G 64 49 BRCA TCGA-GI-A2C8 LRP6 SNP Missense_Mutation 12 12300444 G A 40 61 BRCA TCGA-GI-A2C8 GUCY2C SNP Missense_Mutation 12 14849213 G A 38 55 BRCA TCGA-GI-A2C8 ZC3H13 SNP Missense_Mutation 13 46619585 T G 59 89 BRCA TCGA-GI-A2C8 IPO5 SNP Missense_Mutation 13 98671984 T C 55 93 BRCA TCGA-GI-A2C8 RNASE9 SNP Missense_Mutation 14 21024763 C T 31 39 BRCA TCGA-GI-A2C8 ACIN1 SNP Missense_Mutation 14 23564377 C A 23 91 BRCA TCGA-GI-A2C8 HECTD1 SNP Missense_Mutation 14 31598424 T G 55 80 BRCA TCGA-GI-A2C8 PLEKHD1 SNP Silent 14 69969563 C G 23 12 BRCA TCGA-GI-A2C8 DPF3 SNP Missense_Mutation 14 73198577 G A 39 74 BRCA TCGA-GI-A2C8 SLC24A4 SNP Missense_Mutation 14 92792293 C A 17 80 BRCA TCGA-GI-A2C8 RYR3 SNP Missense_Mutation 15 33955918 C T 23 77 BRCA TCGA-GI-A2C8 USP3 SNP Silent 15 63866266 C T 29 57 BRCA TCGA-GI-A2C8 USP3 SNP Nonsense_Mutation 15 63866545 C T 29 99 BRCA TCGA-GI-A2C8 KLHL25 SNP Missense_Mutation 15 86311723 A C 6 91 BRCA TCGA-GI-A2C8 SSTR5 SNP Silent 16 1129135 C T 17 64 BRCA TCGA-GI-A2C8 CDH1 SNP Missense_Mutation 16 68847304 G T 47 74 BRCA TCGA-GI-A2C8 WDR59 SNP Silent 16 74946204 G C 45 51 BRCA TCGA-GI-A2C8 KRT38 SNP Silent 17 39596964 C T 27 46 BRCA TCGA-GI-A2C8 KRT32 SNP Missense_Mutation 17 39622349 G T 42 65 BRCA TCGA-GI-A2C8 ABCA6 SNP Silent 17 67081246 C T 29 59 BRCA TCGA-GI-A2C8 DNAH17 SNP Silent 17 76567383 G A 40 40 BRCA TCGA-GI-A2C8 ZNF333 SNP Missense_Mutation 19 14805918 G C 45 64 BRCA TCGA-GI-A2C8 ZNF333 SNP Nonsense_Mutation 19 14829928 C T 27 53 BRCA TCGA-GI-A2C8 ZNF431 SNP Missense_Mutation 19 21365513 A G 1 49 BRCA TCGA-GI-A2C8 C19orf76 SNP Missense_Mutation 19 50193508 C G 18 54 BRCA TCGA-GI-A2C8 ZNF841 SNP Missense_Mutation 19 52579393 T G 51 39 BRCA TCGA-GI-A2C8 TTN SNP Missense_Mutation 2 179442485 T C 62 93 BRCA TCGA-GI-A2C8 TTN SNP Missense_Mutation 2 179474059 G T 48 32 BRCA TCGA-GI-A2C8 PLEKHM3 SNP Missense_Mutation 2 208865794 C A 25 48 BRCA TCGA-GI-A2C8 CCDC108 SNP Missense_Mutation 2 219873785 G C 44 78 BRCA TCGA-GI-A2C8 DOCK10 SNP Silent 2 225738767 G T 45 76 BRCA TCGA-GI-A2C8 OTOF SNP Splice_site 2 26693990 A C 6 82 BRCA TCGA-GI-A2C8 SMEK2 SNP Splice_site 2 55795499 C T 18 87 BRCA TCGA-GI-A2C8 SEMA4F SNP Missense_Mutation 2 74883757 C T 26 74 BRCA TCGA-GI-A2C8 LRRTM4 SNP Missense_Mutation 2 77746784 T A 63 90 BRCA TCGA-GI-A2C8 USP39 SNP Missense_Mutation 2 85850804 G A 48 93 BRCA TCGA-GI-A2C8 CHD6 SNP Missense_Mutation 20 40118637 C G 32 58 BRCA TCGA-GI-A2C8 ITSN1 SNP Silent 21 35258721 C G 30 44 BRCA TCGA-GI-A2C8 DGCR2 SNP Missense_Mutation 22 19052401 C A 30 96 BRCA TCGA-GI-A2C8 MEI1 SNP Silent 22 42177711 C T 25 52 BRCA TCGA-GI-A2C8 COL4A6 SNP Missense_Mutation 23 107436869 G T 34 55 BRCA TCGA-GI-A2C8 GRIA3 SNP Missense_Mutation 23 122319694 C A 29 97 BRCA TCGA-GI-A2C8 ARHGEF6 SNP Missense_Mutation 23 135767916 C G 26 62 BRCA TCGA-GI-A2C8 BEND2 SNP Missense_Mutation 23 18221806 G C 34 48 BRCA TCGA-GI-A2C8 SCML2 SNP Missense_Mutation 23 18342120 T C 49 53 BRCA TCGA-GI-A2C8 PHKA2 SNP Missense_Mutation 23 18961899 C A 30 99 BRCA TCGA-GI-A2C8 CACNA1F SNP Missense_Mutation 23 49074448 A T 14 88 BRCA TCGA-GI-A2C8 PHF8 SNP Missense_Mutation 23 53966853 T A 58 45 BRCA TCGA-GI-A2C8 NLGN4X SNP Missense_Mutation 23 5821686 C T 31 91 BRCA TCGA-GI-A2C8 GPR128 SNP Missense_Mutation 3 100373936 T A 54 75 BRCA TCGA-GI-A2C8 CD96 SNP Missense_Mutation 3 111319651 G T 36 44 BRCA TCGA-GI-A2C8 RAP2B SNP Nonsense_Mutation 3 152880777 C T 21 95 BRCA TCGA-GI-A2C8 PLCH1 SNP Missense_Mutation 3 155210555 G A 43 100 BRCA TCGA-GI-A2C8 KNG1 SNP Missense_Mutation 3 186459878 G A 41 60 BRCA TCGA-GI-A2C8 MUC4 SNP Missense_Mutation 3 195480096 C A 22 75 BRCA TCGA-GI-A2C8 DNAH12 SNP Missense_Mutation 3 57419473 G A 48 65 BRCA TCGA-GI-A2C8 EPHA6 SNP Missense_Mutation 3 97167503 A C 6 69 BRCA TCGA-GI-A2C8 LRBA SNP Silent 4 151749586 C T 24 60 BRCA TCGA-GI-A2C8 DDX60L SNP Missense_Mutation 4 169317267 T A 64 54 BRCA TCGA-GI-A2C8 FAT1 SNP Missense_Mutation 4 187628565 C T 19 51 BRCA TCGA-GI-A2C8 ADAMTS19 SNP Nonsense_Mutation 5 129040064 C T 27 58 BRCA TCGA-GI-A2C8 PCDHGA1 SNP Missense_Mutation 5 140710475 T C 62 60 BRCA TCGA-GI-A2C8 ADAM19 SNP Missense_Mutation 5 156957818 A G 4 72 BRCA TCGA-GI-A2C8 ADAMTS2 SNP Missense_Mutation 5 178552030 G A 39 59 BRCA TCGA-GI-A2C8 BTNL3 SNP Silent 5 180429676 G A 40 22 BRCA TCGA-GI-A2C8 IL6ST SNP Missense_Mutation 5 55248110 G C 35 61 BRCA TCGA-GI-A2C8 HMGCR SNP Silent 5 74640149 A G 7 50 BRCA TCGA-GI-A2C8 BVES SNP Silent 6 105581324 C A 21 49 BRCA TCGA-GI-A2C8 ROS1 SNP Silent 6 117632212 G C 33 53 BRCA TCGA-GI-A2C8 MOXD1 SNP Missense_Mutation 6 132618423 C G 32 55 BRCA TCGA-GI-A2C8 ADGB SNP Silent 6 147122985 G A 46 50 BRCA TCGA-GI-A2C8 LRRC16A SNP Missense_Mutation 6 25600888 C T 27 66 BRCA TCGA-GI-A2C8 MUC12 SNP Nonsense_Mutation 7 100647835 C G 29 59 BRCA TCGA-GI-A2C8 LAMB1 SNP Missense_Mutation 7 107572731 C T 22 98 BRCA TCGA-GI-A2C8 NUB1 SNP Silent 7 151071305 C T 27 43 BRCA TCGA-GI-A2C8 BZW2 SNP Missense_Mutation 7 16744257 G T 45 100 BRCA TCGA-GI-A2C8 DNAH11 SNP Missense_Mutation 7 21775366 A G 2 68 BRCA TCGA-GI-A2C8 STK31 SNP Missense_Mutation 7 23793941 G T 37 59 BRCA TCGA-GI-A2C8 HECW1 SNP Missense_Mutation 7 43484164 G T 43 56 BRCA TCGA-GI-A2C8 ZNF853 SNP Missense_Mutation 7 6661429 G T 34 54 BRCA TCGA-GI-A2C8 FZD9 SNP Missense_Mutation 7 72849811 G A 39 69 BRCA TCGA-GI-A2C8 MAGI2 SNP Missense_Mutation 7 77756528 A T 15 89 BRCA TCGA-GI-A2C8 MSRA SNP Silent 8 10285774 C T 27 42 BRCA TCGA-GI-A2C8 FER1L6 SNP Missense_Mutation 8 125131850 G A 38 100 BRCA TCGA-GI-A2C8 BAI1 SNP Missense_Mutation 8 143561149 G A 38 92 BRCA TCGA-GI-A2C8 CSMD1 SNP Missense_Mutation 8 3200906 G T 34 50 BRCA TCGA-GI-A2C8 TTPA SNP Missense_Mutation 8 63978530 C A 18 75 BRCA TCGA-GI-A2C8 IL11RA SNP Missense_Mutation 9 34657465 G A 43 67